Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27044.t1 | XP_013466170.1 | 97.7 | 426 | 9 | 1 | 1 | 425 | 1 | 426 | 2.80E-226 | 794.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27044.t1 | A0A072VF27 | 97.7 | 426 | 9 | 1 | 1 | 425 | 1 | 426 | 2.0e-226 | 794.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049887 | MS.gene27044 | 0.812424 | 4.27E-51 | -1.69E-46 |
MS.gene050657 | MS.gene27044 | 0.816534 | 5.26E-52 | -1.69E-46 |
MS.gene051388 | MS.gene27044 | 0.816166 | 6.36E-52 | -1.69E-46 |
MS.gene053144 | MS.gene27044 | 0.86205 | 6.67E-64 | -1.69E-46 |
MS.gene054584 | MS.gene27044 | 0.853549 | 2.22E-61 | -1.69E-46 |
MS.gene055465 | MS.gene27044 | 0.802035 | 6.79E-49 | -1.69E-46 |
MS.gene055468 | MS.gene27044 | 0.809291 | 2.03E-50 | -1.69E-46 |
MS.gene055469 | MS.gene27044 | 0.800578 | 1.35E-48 | -1.69E-46 |
MS.gene055580 | MS.gene27044 | -0.81121 | 7.85E-51 | -1.69E-46 |
MS.gene056043 | MS.gene27044 | -0.802653 | 5.07E-49 | -1.69E-46 |
MS.gene056538 | MS.gene27044 | 0.807825 | 4.18E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene27044 | MS.gene014442 | PPI |
MS.gene27044 | MS.gene64194 | PPI |
MS.gene27044 | MS.gene63991 | PPI |
MS.gene064739 | MS.gene27044 | PPI |
MS.gene27044 | MS.gene24186 | PPI |
MS.gene27044 | MS.gene069406 | PPI |
MS.gene023122 | MS.gene27044 | PPI |
MS.gene27044 | MS.gene064739 | PPI |
MS.gene27044 | MS.gene028330 | PPI |
MS.gene27044 | MS.gene36460 | PPI |
MS.gene27044 | MS.gene35128 | PPI |
MS.gene27044 | MS.gene69420 | PPI |
MS.gene42277 | MS.gene27044 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27044.t1 | MTR_1g024005 | 98.592 | 426 | 5 | 1 | 1 | 425 | 1 | 426 | 0.0 | 858 |
MS.gene27044.t1 | MTR_3g113270 | 76.168 | 428 | 90 | 5 | 1 | 424 | 1 | 420 | 0.0 | 659 |
MS.gene27044.t1 | MTR_3g071050 | 73.333 | 270 | 65 | 3 | 29 | 296 | 1 | 265 | 2.31e-140 | 402 |
MS.gene27044.t1 | MTR_2g028610 | 37.383 | 428 | 231 | 8 | 30 | 423 | 34 | 458 | 2.44e-92 | 286 |
MS.gene27044.t1 | MTR_2g028590 | 38.118 | 425 | 226 | 8 | 33 | 423 | 42 | 463 | 4.43e-92 | 286 |
MS.gene27044.t1 | MTR_5g077710 | 44.127 | 315 | 162 | 7 | 119 | 424 | 76 | 385 | 1.08e-89 | 277 |
MS.gene27044.t1 | MTR_8g028460 | 40.483 | 331 | 176 | 7 | 108 | 424 | 164 | 487 | 6.48e-80 | 255 |
MS.gene27044.t1 | MTR_0010s0400 | 39.198 | 324 | 180 | 7 | 108 | 425 | 147 | 459 | 8.27e-78 | 249 |
MS.gene27044.t1 | MTR_3g070620 | 76.471 | 136 | 29 | 2 | 227 | 360 | 54 | 188 | 2.63e-67 | 213 |
MS.gene27044.t1 | MTR_4g094572 | 33.333 | 414 | 225 | 8 | 19 | 423 | 4 | 375 | 7.21e-65 | 213 |
MS.gene27044.t1 | MTR_3g071100 | 68.293 | 41 | 12 | 1 | 207 | 247 | 24 | 63 | 1.03e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27044.t1 | AT3G27230 | 72.941 | 425 | 100 | 4 | 1 | 425 | 1 | 410 | 0.0 | 632 |
MS.gene27044.t1 | AT5G40830 | 69.718 | 426 | 114 | 5 | 1 | 424 | 1 | 413 | 0.0 | 612 |
MS.gene27044.t1 | AT5G40830 | 69.718 | 426 | 114 | 5 | 1 | 424 | 1 | 413 | 0.0 | 612 |
MS.gene27044.t1 | AT5G40830 | 63.380 | 426 | 101 | 5 | 1 | 424 | 1 | 373 | 0.0 | 541 |
MS.gene27044.t1 | AT3G05390 | 32.969 | 458 | 241 | 12 | 23 | 425 | 16 | 462 | 1.01e-79 | 254 |
MS.gene27044.t1 | AT4G01240 | 39.697 | 330 | 179 | 7 | 108 | 424 | 334 | 656 | 9.02e-75 | 246 |
MS.gene27044.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 7.66e-70 | 226 |
MS.gene27044.t1 | AT1G29790 | 41.554 | 296 | 153 | 6 | 131 | 423 | 98 | 376 | 7.66e-70 | 226 |
Find 64 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCAGAAACTGATCTTAAA+AGG | 0.211099 | 1.1:-966279 | MS.gene27044:CDS |
TCAAACACATTGTCATAAAA+TGG | 0.248817 | 1.1:+965805 | None:intergenic |
GGTTCAGTTTCACTGAAAAT+TGG | 0.255151 | 1.1:-966777 | MS.gene27044:CDS |
GGAGAGAAAGTTGATAGTTT+TGG | 0.265881 | 1.1:-965583 | MS.gene27044:CDS |
TTTGATATTGGTGGTGGTTC+AGG | 0.273729 | 1.1:-965961 | MS.gene27044:CDS |
CTAAAGGAAGTTGATGTCTT+TGG | 0.285958 | 1.1:+966433 | None:intergenic |
TGCGGGCCGGTGGTTTGTTT+TGG | 0.291218 | 1.1:-965699 | MS.gene27044:CDS |
CTGGTGCTTGTCCTGATGAT+TGG | 0.293180 | 1.1:-966308 | MS.gene27044:CDS |
CAAAGACATCAACTTCCTTT+AGG | 0.332526 | 1.1:-966432 | MS.gene27044:CDS |
TTTACTTGAGCTTAGATCAT+AGG | 0.343285 | 1.1:-965831 | MS.gene27044:CDS |
GCAGCAATGAATTCACTAAA+TGG | 0.344054 | 1.1:+965871 | None:intergenic |
GGAAATGGTGGAATTAGAAT+AGG | 0.346150 | 1.1:-965985 | MS.gene27044:CDS |
TTCAGCTCATTTGCAATGTT+GGG | 0.356522 | 1.1:+966465 | None:intergenic |
CCATTCTTCAGAAACCAGTT+AGG | 0.362161 | 1.1:-965531 | MS.gene27044:CDS |
TTCATGAGTTACAAGGCTTC+TGG | 0.364603 | 1.1:-966327 | MS.gene27044:CDS |
GTTACTGTTGTTGGTGGTTG+TGG | 0.369532 | 1.1:+966623 | None:intergenic |
ATTAGAATAGGGTTTGATAT+TGG | 0.369699 | 1.1:-965973 | MS.gene27044:CDS |
TCTAACCTTCAACCCCTAAC+TGG | 0.373706 | 1.1:+965517 | None:intergenic |
GAAATGGTGGAATTAGAATA+GGG | 0.380459 | 1.1:-965984 | MS.gene27044:CDS |
TTGGATATAAGAAATTGAAA+TGG | 0.387064 | 1.1:-965612 | MS.gene27044:CDS |
ACAAGGTTGATTGAAAGGTT+TGG | 0.388153 | 1.1:-965631 | MS.gene27044:CDS |
TTAGGCAAGGATTCAAGAAC+TGG | 0.392044 | 1.1:-966414 | MS.gene27044:CDS |
TTTCAGCTCATTTGCAATGT+TGG | 0.396349 | 1.1:+966464 | None:intergenic |
TGGATATAAGAAATTGAAAT+GGG | 0.396901 | 1.1:-965611 | MS.gene27044:CDS |
AAGATTAAGGTTACTGTTGT+TGG | 0.413130 | 1.1:+966614 | None:intergenic |
AGAGGCTTCCAAAGAGAAAC+AGG | 0.426242 | 1.1:+966189 | None:intergenic |
GTTTCTCTTTGGAAGCCTCT+TGG | 0.431268 | 1.1:-966186 | MS.gene27044:CDS |
CTCTAACAAGGTTGATTGAA+AGG | 0.444624 | 1.1:-965636 | MS.gene27044:CDS |
TAAGAAATTGAAATGGGTTG+TGG | 0.451047 | 1.1:-965605 | MS.gene27044:CDS |
CATTCTTCAGAAACCAGTTA+GGG | 0.456557 | 1.1:-965530 | MS.gene27044:CDS |
AGAAACCAGTTAGGGGTTGA+AGG | 0.456670 | 1.1:-965522 | None:intergenic |
AAGAAATTGAAATGGGTTGT+GGG | 0.464176 | 1.1:-965604 | MS.gene27044:CDS |
AGCATAGAGAGCAAAGAGAT+TGG | 0.472679 | 1.1:+966674 | None:intergenic |
AAGGAAGTTGATGTCTTTGG+AGG | 0.474654 | 1.1:+966436 | None:intergenic |
AAACACCTTCTTCTTGGTAA+AGG | 0.474985 | 1.1:+966249 | None:intergenic |
GTTCTTGAATCCTTGCCTAA+AGG | 0.475247 | 1.1:+966417 | None:intergenic |
TGCATCAACATTAAGAGTAT+TGG | 0.482891 | 1.1:+965894 | None:intergenic |
CTCAGAAACTGATCTTAAAA+GGG | 0.485828 | 1.1:-966278 | MS.gene27044:CDS |
TGGAGGAAAAGCTGAAAAGT+TGG | 0.486068 | 1.1:-965752 | MS.gene27044:CDS |
AGAATAGGGTTTGATATTGG+TGG | 0.487533 | 1.1:-965970 | MS.gene27044:CDS |
AAGAACTGGGATCACTGAAA+TGG | 0.496871 | 1.1:-966400 | MS.gene27044:CDS |
TGATCTAAGCTCAAGTAAAG+TGG | 0.497485 | 1.1:+965835 | None:intergenic |
CCTAACTGGTTTCTGAAGAA+TGG | 0.500091 | 1.1:+965531 | None:intergenic |
ATAGGGTTTGATATTGGTGG+TGG | 0.514507 | 1.1:-965967 | MS.gene27044:CDS |
TGAGCTACACTCCAATCATC+AGG | 0.519786 | 1.1:+966297 | None:intergenic |
GATTCATGCATCAAGTGCAT+TGG | 0.520145 | 1.1:-965779 | MS.gene27044:CDS |
TCAAAAGAAACTAGCCCAGA+TGG | 0.525921 | 1.1:-966529 | MS.gene27044:CDS |
GTTTCACTGAAAATTGGAGA+TGG | 0.532703 | 1.1:-966771 | MS.gene27044:CDS |
GTCACAGTTCATGAGTTACA+AGG | 0.534645 | 1.1:-966334 | MS.gene27044:CDS |
TTCCAAAGAGAAACAGGAAA+AGG | 0.536142 | 1.1:+966195 | None:intergenic |
ATTAAGGTTACTGTTGTTGG+TGG | 0.540761 | 1.1:+966617 | None:intergenic |
ACATCAACTTCCTTTAGGCA+AGG | 0.546386 | 1.1:-966427 | MS.gene27044:CDS |
TGTTGTTGGTGGTTGTGGTG+TGG | 0.552926 | 1.1:+966628 | None:intergenic |
AGTGAATTCATTGCTGCTAG+AGG | 0.555907 | 1.1:-965865 | MS.gene27044:CDS |
GCATCAAGTGCATTGGATGT+TGG | 0.560273 | 1.1:-965772 | MS.gene27044:CDS |
GTGAGCCTTTACCAAGAAGA+AGG | 0.569775 | 1.1:-966254 | MS.gene27044:CDS |
ACTGAAATGGTGTCATCAGT+TGG | 0.572185 | 1.1:-966387 | MS.gene27044:CDS |
TTAAAAGTGTTATTACCAAG+AGG | 0.586025 | 1.1:+966171 | None:intergenic |
TGAGAATCAGAGATTTGTGA+AGG | 0.606302 | 1.1:-966052 | MS.gene27044:CDS |
ATCAAGCCAAAACAAACCAC+CGG | 0.614460 | 1.1:+965693 | None:intergenic |
TCAAGTGCATTGGATGTTGG+AGG | 0.648963 | 1.1:-965769 | MS.gene27044:CDS |
TAGGCAAGGATTCAAGAACT+GGG | 0.665439 | 1.1:-966413 | MS.gene27044:CDS |
AGAAGAAACAAACTCTAACA+AGG | 0.679763 | 1.1:-965648 | MS.gene27044:CDS |
ATTCTTCAGAAACCAGTTAG+GGG | 0.694148 | 1.1:-965529 | MS.gene27044:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAGTAAAAATGATTTTT+TGG | - | chr1.1:966277-966296 | MS.gene27044:CDS | 10.0% |
!! | TGGATATAAGAAATTGAAAT+GGG | - | chr1.1:966694-966713 | MS.gene27044:CDS | 20.0% |
!! | TTGGATATAAGAAATTGAAA+TGG | - | chr1.1:966693-966712 | MS.gene27044:CDS | 20.0% |
!!! | TTGGTAATAACACTTTTAAT+TGG | - | chr1.1:966138-966157 | MS.gene27044:CDS | 20.0% |
!!! | TTGTGTTAATTGTTTTGATT+TGG | - | chr1.1:966217-966236 | MS.gene27044:CDS | 20.0% |
! | ATTAGAATAGGGTTTGATAT+TGG | - | chr1.1:966332-966351 | MS.gene27044:CDS | 25.0% |
! | TCAAAAACTGTTTCAAAATC+AGG | - | chr1.1:966080-966099 | MS.gene27044:CDS | 25.0% |
! | TCAAACACATTGTCATAAAA+TGG | + | chr1.1:966503-966522 | None:intergenic | 25.0% |
!!! | AAGAGTTTTGAATGTTTGAA+AGG | - | chr1.1:966176-966195 | MS.gene27044:CDS | 25.0% |
!!! | AATAACACTTTTAATTGGAG+TGG | - | chr1.1:966143-966162 | MS.gene27044:CDS | 25.0% |
!!! | AATTGTTTTGATTTGGTTAG+TGG | - | chr1.1:966224-966243 | MS.gene27044:CDS | 25.0% |
!!! | AGATGTTTTTGTGAAGATTA+AGG | + | chr1.1:965707-965726 | None:intergenic | 25.0% |
!!! | TTAAAAGTGTTATTACCAAG+AGG | + | chr1.1:966137-966156 | None:intergenic | 25.0% |
AAGATTAAGGTTACTGTTGT+TGG | + | chr1.1:965694-965713 | None:intergenic | 30.0% | |
AGAAGAAACAAACTCTAACA+AGG | - | chr1.1:966657-966676 | MS.gene27044:CDS | 30.0% | |
CTCAGAAACTGATCTTAAAA+GGG | - | chr1.1:966027-966046 | MS.gene27044:CDS | 30.0% | |
TTTACTTGAGCTTAGATCAT+AGG | - | chr1.1:966474-966493 | MS.gene27044:CDS | 30.0% | |
TTTGAAAAACACCTTCTTCT+TGG | + | chr1.1:966065-966084 | None:intergenic | 30.0% | |
! | GAAATGGTGGAATTAGAATA+GGG | - | chr1.1:966321-966340 | MS.gene27044:CDS | 30.0% |
! | TGCATCAACATTAAGAGTAT+TGG | + | chr1.1:966414-966433 | None:intergenic | 30.0% |
!! | AAGAAATTGAAATGGGTTGT+GGG | - | chr1.1:966701-966720 | MS.gene27044:CDS | 30.0% |
!! | TAAGAAATTGAAATGGGTTG+TGG | - | chr1.1:966700-966719 | MS.gene27044:CDS | 30.0% |
!!! | AAAGTTGATAGTTTTGGATC+AGG | - | chr1.1:966728-966747 | MS.gene27044:CDS | 30.0% |
!!! | GATGTTTTAGCATTAGGAAA+TGG | - | chr1.1:966305-966324 | MS.gene27044:CDS | 30.0% |
!!! | GTTGATGATGTTTTAGCATT+AGG | - | chr1.1:966299-966318 | MS.gene27044:CDS | 30.0% |
AAACACCTTCTTCTTGGTAA+AGG | + | chr1.1:966059-966078 | None:intergenic | 35.0% | |
AGAATAGGGTTTGATATTGG+TGG | - | chr1.1:966335-966354 | MS.gene27044:CDS | 35.0% | |
ATTAAGGTTACTGTTGTTGG+TGG | + | chr1.1:965691-965710 | None:intergenic | 35.0% | |
ATTCTTCAGAAACCAGTTAG+GGG | - | chr1.1:966776-966795 | MS.gene27044:CDS | 35.0% | |
CAAAGACATCAACTTCCTTT+AGG | - | chr1.1:965873-965892 | MS.gene27044:CDS | 35.0% | |
CATTCTTCAGAAACCAGTTA+GGG | - | chr1.1:966775-966794 | MS.gene27044:CDS | 35.0% | |
GCAGCAATGAATTCACTAAA+TGG | + | chr1.1:966437-966456 | None:intergenic | 35.0% | |
GCTCAGAAACTGATCTTAAA+AGG | - | chr1.1:966026-966045 | MS.gene27044:CDS | 35.0% | |
GGTTCAGTTTCACTGAAAAT+TGG | - | chr1.1:965528-965547 | MS.gene27044:CDS | 35.0% | |
GTTTCACTGAAAATTGGAGA+TGG | - | chr1.1:965534-965553 | MS.gene27044:CDS | 35.0% | |
TCTTCACAAAAACATCTCTC+TGG | - | chr1.1:965710-965729 | MS.gene27044:CDS | 35.0% | |
TGAGAATCAGAGATTTGTGA+AGG | - | chr1.1:966253-966272 | MS.gene27044:CDS | 35.0% | |
TGATCTAAGCTCAAGTAAAG+TGG | + | chr1.1:966473-966492 | None:intergenic | 35.0% | |
TTCAGCTCATTTGCAATGTT+GGG | + | chr1.1:965843-965862 | None:intergenic | 35.0% | |
TTCCAAAGAGAAACAGGAAA+AGG | + | chr1.1:966113-966132 | None:intergenic | 35.0% | |
TTTCAGCTCATTTGCAATGT+TGG | + | chr1.1:965844-965863 | None:intergenic | 35.0% | |
! | ACAAGGTTGATTGAAAGGTT+TGG | - | chr1.1:966674-966693 | MS.gene27044:CDS | 35.0% |
! | CTCTAACAAGGTTGATTGAA+AGG | - | chr1.1:966669-966688 | MS.gene27044:CDS | 35.0% |
! | GGAAATGGTGGAATTAGAAT+AGG | - | chr1.1:966320-966339 | MS.gene27044:CDS | 35.0% |
! | TTGATATCGATCGAGTTTTG+CGG | - | chr1.1:966588-966607 | MS.gene27044:CDS | 35.0% |
!! | CTAAAGGAAGTTGATGTCTT+TGG | + | chr1.1:965875-965894 | None:intergenic | 35.0% |
!! | GTTTTAGCATTAGGAAATGG+TGG | - | chr1.1:966308-966327 | MS.gene27044:CDS | 35.0% |
!! | TTCCTTTTCCTGTTTCTCTT+TGG | - | chr1.1:966108-966127 | MS.gene27044:CDS | 35.0% |
!!! | AAGAAGCTGTTTTTCCATCT+GGG | + | chr1.1:965793-965812 | None:intergenic | 35.0% |
!!! | GGAGAGAAAGTTGATAGTTT+TGG | - | chr1.1:966722-966741 | MS.gene27044:CDS | 35.0% |
!!! | TGTTTTGATTTGGTTAGTGG+TGG | - | chr1.1:966227-966246 | MS.gene27044:CDS | 35.0% |
AAGAACTGGGATCACTGAAA+TGG | - | chr1.1:965905-965924 | MS.gene27044:CDS | 40.0% | |
ACATCAACTTCCTTTAGGCA+AGG | - | chr1.1:965878-965897 | MS.gene27044:CDS | 40.0% | |
AGCATAGAGAGCAAAGAGAT+TGG | + | chr1.1:965634-965653 | None:intergenic | 40.0% | |
AGTGAATTCATTGCTGCTAG+AGG | - | chr1.1:966440-966459 | MS.gene27044:CDS | 40.0% | |
ATAGGGTTTGATATTGGTGG+TGG | - | chr1.1:966338-966357 | MS.gene27044:CDS | 40.0% | |
ATCAAGCCAAAACAAACCAC+CGG | + | chr1.1:966615-966634 | None:intergenic | 40.0% | |
CAGATGGAAAAACAGCTTCT+TGG | - | chr1.1:965792-965811 | MS.gene27044:CDS | 40.0% | |
CCATTCTTCAGAAACCAGTT+AGG | - | chr1.1:966774-966793 | MS.gene27044:CDS | 40.0% | |
GATTCATGCATCAAGTGCAT+TGG | - | chr1.1:966526-966545 | MS.gene27044:CDS | 40.0% | |
GTCACAGTTCATGAGTTACA+AGG | - | chr1.1:965971-965990 | MS.gene27044:CDS | 40.0% | |
GTTCTTGAATCCTTGCCTAA+AGG | + | chr1.1:965891-965910 | None:intergenic | 40.0% | |
TAGGCAAGGATTCAAGAACT+GGG | - | chr1.1:965892-965911 | MS.gene27044:CDS | 40.0% | |
TCAAAAGAAACTAGCCCAGA+TGG | - | chr1.1:965776-965795 | MS.gene27044:CDS | 40.0% | |
TGGAGGAAAAGCTGAAAAGT+TGG | - | chr1.1:966553-966572 | MS.gene27044:CDS | 40.0% | |
TTAGGCAAGGATTCAAGAAC+TGG | - | chr1.1:965891-965910 | MS.gene27044:CDS | 40.0% | |
TTCATGAGTTACAAGGCTTC+TGG | - | chr1.1:965978-965997 | MS.gene27044:CDS | 40.0% | |
! | CCTAACTGGTTTCTGAAGAA+TGG | + | chr1.1:966777-966796 | None:intergenic | 40.0% |
! | TGATATCGATCGAGTTTTGC+GGG | - | chr1.1:966589-966608 | MS.gene27044:CDS | 40.0% |
!! | AAGGAAGTTGATGTCTTTGG+AGG | + | chr1.1:965872-965891 | None:intergenic | 40.0% |
!! | ACTGAAATGGTGTCATCAGT+TGG | - | chr1.1:965918-965937 | MS.gene27044:CDS | 40.0% |
!! | TTTGATATTGGTGGTGGTTC+AGG | - | chr1.1:966344-966363 | MS.gene27044:CDS | 40.0% |
!!! | CAAGAAGCTGTTTTTCCATC+TGG | + | chr1.1:965794-965813 | None:intergenic | 40.0% |
AGAGGCTTCCAAAGAGAAAC+AGG | + | chr1.1:966119-966138 | None:intergenic | 45.0% | |
GCATCAAGTGCATTGGATGT+TGG | - | chr1.1:966533-966552 | MS.gene27044:CDS | 45.0% | |
GTGAGCCTTTACCAAGAAGA+AGG | - | chr1.1:966051-966070 | MS.gene27044:CDS | 45.0% | |
TCAAGTGCATTGGATGTTGG+AGG | - | chr1.1:966536-966555 | MS.gene27044:CDS | 45.0% | |
TGAGCTACACTCCAATCATC+AGG | + | chr1.1:966011-966030 | None:intergenic | 45.0% | |
! | GTTTCTCTTTGGAAGCCTCT+TGG | - | chr1.1:966119-966138 | MS.gene27044:CDS | 45.0% |
!! | GTTACTGTTGTTGGTGGTTG+TGG | + | chr1.1:965685-965704 | None:intergenic | 45.0% |
!!! | GGTTGTGGTGTGGTTTTTTG+AGG | + | chr1.1:965670-965689 | None:intergenic | 45.0% |
CTGGTGCTTGTCCTGATGAT+TGG | - | chr1.1:965997-966016 | MS.gene27044:CDS | 50.0% | |
!! | TGTTGTTGGTGGTTGTGGTG+TGG | + | chr1.1:965680-965699 | None:intergenic | 50.0% |
! | ATCGATCGAGTTTTGCGGGC+CGG | - | chr1.1:966593-966612 | MS.gene27044:CDS | 55.0% |
!!! | TGCGGGCCGGTGGTTTGTTT+TGG | - | chr1.1:966606-966625 | MS.gene27044:CDS | 60.0% |
! | GATCGAGTTTTGCGGGCCGG+TGG | - | chr1.1:966596-966615 | MS.gene27044:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 965525 | 966802 | 965525 | ID=MS.gene27044 |
chr1.1 | mRNA | 965525 | 966802 | 965525 | ID=MS.gene27044.t1;Parent=MS.gene27044 |
chr1.1 | exon | 965525 | 966802 | 965525 | ID=MS.gene27044.t1.exon1;Parent=MS.gene27044.t1 |
chr1.1 | CDS | 965525 | 966802 | 965525 | ID=cds.MS.gene27044.t1;Parent=MS.gene27044.t1 |
Gene Sequence |
Protein sequence |