Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053627.t1 | XP_003608337.1 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053627.t1 | Q40784 | 64.4 | 298 | 103 | 2 | 15 | 310 | 25 | 321 | 9.0e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053627.t1 | G7JU00 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 7.9e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053627 | MS.gene90270 | 0.895404 | 9.90E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053627 | MS.gene072750 | PPI |
| MS.gene053627 | MS.gene82807 | PPI |
| MS.gene053627 | MS.gene57695 | PPI |
| MS.gene032655 | MS.gene053627 | PPI |
| MS.gene21644 | MS.gene053627 | PPI |
| MS.gene73340 | MS.gene053627 | PPI |
| MS.gene053627 | MS.gene037013 | PPI |
| MS.gene060400 | MS.gene053627 | PPI |
| MS.gene053627 | MS.gene053078 | PPI |
| MS.gene053627 | MS.gene024663 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053627.t1 | MTR_4g092780 | 98.423 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 0.0 | 646 |
| MS.gene053627.t1 | MTR_7g116910 | 89.841 | 315 | 32 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MS.gene053627.t1 | MTR_5g009670 | 73.443 | 305 | 79 | 2 | 1 | 304 | 1 | 304 | 1.28e-169 | 473 |
| MS.gene053627.t1 | MTR_2g036810 | 66.113 | 301 | 99 | 2 | 16 | 314 | 14 | 313 | 5.09e-153 | 431 |
| MS.gene053627.t1 | MTR_4g005740 | 63.823 | 293 | 103 | 2 | 20 | 310 | 14 | 305 | 9.77e-143 | 405 |
| MS.gene053627.t1 | MTR_5g009670 | 71.200 | 250 | 70 | 2 | 1 | 249 | 1 | 249 | 2.48e-130 | 372 |
| MS.gene053627.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 7 | 295 | 8.32e-118 | 342 |
| MS.gene053627.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 65 | 353 | 2.41e-117 | 343 |
| MS.gene053627.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 54 | 342 | 2.51e-117 | 342 |
| MS.gene053627.t1 | MTR_5g020640 | 31.673 | 281 | 172 | 7 | 23 | 301 | 50 | 312 | 3.45e-34 | 127 |
| MS.gene053627.t1 | MTR_5g020640 | 35.260 | 173 | 103 | 4 | 23 | 195 | 50 | 213 | 5.35e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053627.t1 | AT3G61610 | 73.817 | 317 | 83 | 0 | 1 | 317 | 1 | 317 | 0.0 | 504 |
| MS.gene053627.t1 | AT3G61610 | 73.955 | 311 | 81 | 0 | 7 | 317 | 1 | 311 | 1.20e-178 | 496 |
| MS.gene053627.t1 | AT4G23730 | 65.763 | 295 | 100 | 1 | 11 | 304 | 12 | 306 | 1.87e-153 | 432 |
| MS.gene053627.t1 | AT4G23730 | 64.452 | 301 | 100 | 2 | 11 | 304 | 12 | 312 | 7.80e-151 | 426 |
| MS.gene053627.t1 | AT5G57330 | 63.576 | 302 | 107 | 2 | 11 | 310 | 5 | 305 | 7.05e-148 | 418 |
| MS.gene053627.t1 | AT4G23730 | 67.658 | 269 | 86 | 1 | 37 | 304 | 3 | 271 | 3.11e-143 | 405 |
| MS.gene053627.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene053627.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene053627.t1 | AT5G14500 | 59.932 | 292 | 114 | 2 | 19 | 310 | 8 | 296 | 4.29e-131 | 375 |
| MS.gene053627.t1 | AT5G14500 | 55.205 | 317 | 114 | 3 | 19 | 310 | 8 | 321 | 1.31e-124 | 360 |
| MS.gene053627.t1 | AT4G25900 | 50.000 | 290 | 139 | 2 | 15 | 304 | 32 | 315 | 6.85e-109 | 320 |
| MS.gene053627.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 19 | 278 | 1.51e-36 | 132 |
| MS.gene053627.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene053627.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene053627.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCTCGTATTGCTTT+TGG | 0.257552 | 4.4:+21698493 | None:intergenic |
| TATTCCTCACTCGTGATATC+AGG | 0.261723 | 4.4:+21697953 | None:intergenic |
| CGCATACCATACATACTTGT+TGG | 0.306903 | 4.4:-21697902 | MS.gene053627:CDS |
| CACTTCATGGCGCAATGAGC+AGG | 0.336387 | 4.4:-21699053 | MS.gene053627:CDS |
| TATGCGAATGAGAAACTAAA+TGG | 0.347249 | 4.4:+21697919 | None:intergenic |
| TATACCTGTGGAAAACATAT+TGG | 0.354365 | 4.4:+21698469 | None:intergenic |
| CCCGTGCCGAAGCGCCTTGT+GGG | 0.355163 | 4.4:+21699280 | None:intergenic |
| TGCAATTAGGTAAGCTTACA+TGG | 0.360588 | 4.4:-21699085 | MS.gene053627:intron |
| TCTAGAACTGCGATTATGTT+TGG | 0.370057 | 4.4:+21697318 | None:intergenic |
| TACCTCGGATTCAAATGTTA+TGG | 0.374354 | 4.4:+21697518 | None:intergenic |
| CTCCCTGTCCACTCCTCTCC+AGG | 0.395754 | 4.4:+21696880 | None:intergenic |
| AAAATTTGTATAGTGAGATA+AGG | 0.404611 | 4.4:-21697614 | MS.gene053627:intron |
| CTTCAGATAATTTGAGTAGC+AGG | 0.408420 | 4.4:+21698213 | None:intergenic |
| ACTTGTTGGTTTCTGACATA+AGG | 0.410514 | 4.4:-21697888 | MS.gene053627:intron |
| AAATTTGTATAGTGAGATAA+GGG | 0.410995 | 4.4:-21697613 | MS.gene053627:intron |
| AAACAAATGCTTTGTGTAGA+TGG | 0.429208 | 4.4:-21696934 | MS.gene053627:CDS |
| GCAAATAGCATACCAACATC+AGG | 0.441237 | 4.4:+21697252 | None:intergenic |
| ATGGAGCGCAGGTCACTTCA+TGG | 0.445349 | 4.4:-21699066 | MS.gene053627:CDS |
| GAATTTACAAAGGACTTGAA+TGG | 0.456569 | 4.4:-21699327 | MS.gene053627:CDS |
| TCTCCAGGCTTCAAGTTCAC+AGG | 0.459284 | 4.4:+21696895 | None:intergenic |
| ACCCGTGCCGAAGCGCCTTG+TGG | 0.465263 | 4.4:+21699279 | None:intergenic |
| GACTTCGATTTCTTCTCCCA+TGG | 0.466878 | 4.4:+21696985 | None:intergenic |
| CAGAAACCAACAAGTATGTA+TGG | 0.472937 | 4.4:+21697896 | None:intergenic |
| AAGCCTGGAGAGGAGTGGAC+AGG | 0.473546 | 4.4:-21696883 | MS.gene053627:CDS |
| TTCTAGATCATGAGAGGAAA+CGG | 0.476080 | 4.4:-21697302 | MS.gene053627:CDS |
| TCACTCGTGATATCAGGGTT+AGG | 0.481124 | 4.4:+21697959 | None:intergenic |
| CCCCACAAGGCGCTTCGGCA+CGG | 0.482644 | 4.4:-21699281 | MS.gene053627:CDS |
| GGGGCATTCGGCAGCTGTGT+GGG | 0.490352 | 4.4:-21699367 | MS.gene053627:CDS |
| GTTTGGAAACTGTGGATCGC+TGG | 0.500146 | 4.4:-21698330 | MS.gene053627:CDS |
| TCGAAGTCGATGGTGGACTT+TGG | 0.502611 | 4.4:-21696970 | MS.gene053627:CDS |
| TATAGTGAGATAAGGGTTGA+AGG | 0.506399 | 4.4:-21697606 | MS.gene053627:intron |
| TCGGACCCCACAAGGCGCTT+CGG | 0.506831 | 4.4:-21699286 | MS.gene053627:CDS |
| AAACCTGTGAACTTGAAGCC+TGG | 0.507242 | 4.4:-21696898 | MS.gene053627:CDS |
| GTGCAGCCGTGTGGAATCCA+TGG | 0.507273 | 4.4:-21697002 | MS.gene053627:intron |
| AGCCTGGAGAGGAGTGGACA+GGG | 0.507327 | 4.4:-21696882 | MS.gene053627:CDS |
| CCCACAAGGCGCTTCGGCAC+GGG | 0.509186 | 4.4:-21699280 | MS.gene053627:intron |
| TCATTTGGAGGCAAAGGAGG+AGG | 0.514508 | 4.4:+21698260 | None:intergenic |
| TTGGAATCATTTGGAGGCAA+AGG | 0.515039 | 4.4:+21698254 | None:intergenic |
| ACTTCATGGCGCAATGAGCA+GGG | 0.522848 | 4.4:-21699052 | MS.gene053627:CDS |
| CGAGTGTCTCTTACGACAGA+TGG | 0.533298 | 4.4:-21697985 | MS.gene053627:CDS |
| ACGGACATACATTATAAGAA+AGG | 0.533476 | 4.4:-21697283 | MS.gene053627:CDS |
| TCATAATAGTTTGGAAACTG+TGG | 0.533947 | 4.4:-21698338 | MS.gene053627:intron |
| TTGCCTCCAAATGATTCCAA+TGG | 0.540698 | 4.4:-21698251 | MS.gene053627:CDS |
| TTTCCATTGGAATCATTTGG+AGG | 0.543188 | 4.4:+21698248 | None:intergenic |
| TGGGGCATTCGGCAGCTGTG+TGG | 0.545391 | 4.4:-21699368 | MS.gene053627:CDS |
| GAATGAGAAACTAAATGGCT+TGG | 0.548213 | 4.4:+21697924 | None:intergenic |
| TCTTGAGACACTTGATTACC+TGG | 0.549791 | 4.4:-21697583 | MS.gene053627:CDS |
| CTTCTCCCATGGATTCCACA+CGG | 0.552012 | 4.4:+21696996 | None:intergenic |
| ATGTGAAGTGCTGGCCACAT+AGG | 0.567231 | 4.4:-21698187 | MS.gene053627:intron |
| GAATCATTTGGAGGCAAAGG+AGG | 0.570451 | 4.4:+21698257 | None:intergenic |
| TGTGGATCGCTGGAGCTGCA+TGG | 0.572350 | 4.4:-21698320 | MS.gene053627:CDS |
| TGCCATAACATTTGAATCCG+AGG | 0.572417 | 4.4:-21697520 | MS.gene053627:intron |
| TTGATTGTAGACACTTTCAA+AGG | 0.575710 | 4.4:-21698518 | MS.gene053627:intron |
| ATTCCTCACTCGTGATATCA+GGG | 0.579407 | 4.4:+21697954 | None:intergenic |
| CTGAAGAAGATGTGAAGTGC+TGG | 0.583076 | 4.4:-21698196 | MS.gene053627:CDS |
| GGTAAGCTTACATGGAGCGC+AGG | 0.592548 | 4.4:-21699077 | MS.gene053627:CDS |
| AAGGAAGGTCTCCCTGATGT+TGG | 0.594415 | 4.4:-21697264 | MS.gene053627:intron |
| GATTTGCAAGAAATAAAATG+TGG | 0.594654 | 4.4:-21698298 | MS.gene053627:CDS |
| TTTGAGTAGCAGGTCGACAA+AGG | 0.600438 | 4.4:+21698223 | None:intergenic |
| CCGTGCCGAAGCGCCTTGTG+GGG | 0.608350 | 4.4:+21699281 | None:intergenic |
| GAATCGATCAAGTTGTACTT+CGG | 0.613420 | 4.4:-21699305 | MS.gene053627:CDS |
| GAAGAAATCGAAGTCGATGG+TGG | 0.614525 | 4.4:-21696977 | MS.gene053627:CDS |
| TGTGAACTTGAAGCCTGGAG+AGG | 0.615658 | 4.4:-21696893 | MS.gene053627:CDS |
| CAATCAAGTTAATACCTATG+TGG | 0.617553 | 4.4:+21698173 | None:intergenic |
| ACTTGAAGCCTGGAGAGGAG+TGG | 0.621676 | 4.4:-21696888 | MS.gene053627:CDS |
| ACATACATTATAAGAAAGGA+AGG | 0.622005 | 4.4:-21697279 | MS.gene053627:CDS |
| ATTTGCAAGAAATAAAATGT+GGG | 0.626744 | 4.4:-21698297 | MS.gene053627:CDS |
| CGACTAGGTCTCGACAGAAG+TGG | 0.627675 | 4.4:-21696817 | MS.gene053627:CDS |
| CAAATAGCATACCAACATCA+GGG | 0.631758 | 4.4:+21697253 | None:intergenic |
| ACTGCTATTCACAAGCTGCA+AGG | 0.635776 | 4.4:-21699023 | MS.gene053627:intron |
| GGAGAAGAAATCGAAGTCGA+TGG | 0.636854 | 4.4:-21696980 | MS.gene053627:CDS |
| CTGGAGAGGAGTGGACAGGG+AGG | 0.637296 | 4.4:-21696879 | MS.gene053627:CDS |
| TTCATGGCGCAATGAGCAGG+GGG | 0.638687 | 4.4:-21699050 | MS.gene053627:CDS |
| TCGCAGTTCTAGATCATGAG+AGG | 0.640361 | 4.4:-21697308 | MS.gene053627:CDS |
| CTTCATGGCGCAATGAGCAG+GGG | 0.642270 | 4.4:-21699051 | MS.gene053627:CDS |
| GTTGTACTTCGGACCCCACA+AGG | 0.644189 | 4.4:-21699294 | MS.gene053627:CDS |
| TGCAGCCGTGTGGAATCCAT+GGG | 0.655533 | 4.4:-21697001 | MS.gene053627:intron |
| TGTTTCTTTGTGCAGCCGTG+TGG | 0.657679 | 4.4:-21697011 | MS.gene053627:intron |
| AAAGCACGAGTTACAGAACA+AGG | 0.658067 | 4.4:-21697546 | MS.gene053627:CDS |
| TCGTAAGAGACACTCGAAGG+CGG | 0.666141 | 4.4:+21697992 | None:intergenic |
| AGCAGCAACTGAATTTACAA+AGG | 0.671488 | 4.4:-21699337 | MS.gene053627:CDS |
| CACTTCTGTCGAGACCTAGT+CGG | 0.679916 | 4.4:+21696818 | None:intergenic |
| TAACCCTGATATCACGAGTG+AGG | 0.687144 | 4.4:-21697957 | MS.gene053627:CDS |
| GCGCCAAAAGCAATACGAGG+AGG | 0.709878 | 4.4:-21698496 | MS.gene053627:CDS |
| CTGTCGTAAGAGACACTCGA+AGG | 0.711416 | 4.4:+21697989 | None:intergenic |
| AAGGCGCCAAAAGCAATACG+AGG | 0.738080 | 4.4:-21698499 | MS.gene053627:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTATTTTTATTTTTAGA+TGG | - | chr4.4:21697202-21697221 | MS.gene053627:intron | 10.0% |
| !! | GTTTATTAATGATAAATACT+TGG | - | chr4.4:21698454-21698473 | MS.gene053627:intron | 15.0% |
| !!! | AAAAACTCATTTTTGATAAT+AGG | + | chr4.4:21697285-21697304 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTTAGATGGTA+TGG | - | chr4.4:21697207-21697226 | MS.gene053627:intron | 15.0% |
| !!! | GTAAATTAAGCTTTTATTTT+TGG | - | chr4.4:21698739-21698758 | MS.gene053627:intron | 15.0% |
| !!! | TTTTCTTCAAATATGATAAT+TGG | - | chr4.4:21698533-21698552 | MS.gene053627:intron | 15.0% |
| !! | AAAATTTGTATAGTGAGATA+AGG | - | chr4.4:21698565-21698584 | MS.gene053627:intron | 20.0% |
| !! | AAATTTGTATAGTGAGATAA+GGG | - | chr4.4:21698566-21698585 | MS.gene053627:intron | 20.0% |
| !! | ATTTGCAAGAAATAAAATGT+GGG | - | chr4.4:21697882-21697901 | MS.gene053627:intron | 20.0% |
| !! | CCAAACTATTATGAAAATTT+AGG | + | chr4.4:21697835-21697854 | None:intergenic | 20.0% |
| !! | TAAAAGCTTAATTTACATCT+TGG | + | chr4.4:21698735-21698754 | None:intergenic | 20.0% |
| !! | TACTTTAATCTAAATGAAAC+AGG | + | chr4.4:21697787-21697806 | None:intergenic | 20.0% |
| !! | TATATATTCCAAAACTATCA+GGG | + | chr4.4:21698512-21698531 | None:intergenic | 20.0% |
| !! | TTATATATTCCAAAACTATC+AGG | + | chr4.4:21698513-21698532 | None:intergenic | 20.0% |
| !! | TTCAATATCAATACATGATA+AGG | - | chr4.4:21696995-21697014 | MS.gene053627:CDS | 20.0% |
| !!! | ACAATCATTTCTTTTTTTGA+GGG | - | chr4.4:21698339-21698358 | MS.gene053627:intron | 20.0% |
| !!! | ACCAATATTTCTTTTTAAAG+AGG | - | chr4.4:21697601-21697620 | MS.gene053627:CDS | 20.0% |
| !!! | ATTTGTGTTTTTTGTTACTT+TGG | + | chr4.4:21699026-21699045 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTCATAATAGTT+TGG | - | chr4.4:21697832-21697851 | MS.gene053627:intron | 20.0% |
| !!! | TAAACATTTAAAACCTTGTT+CGG | + | chr4.4:21699070-21699089 | None:intergenic | 20.0% |
| !!! | TCTCAAATCTCAATAATTTT+GGG | - | chr4.4:21697761-21697780 | MS.gene053627:intron | 20.0% |
| !!! | TTTGTGTTTTTTGTTACTTT+GGG | + | chr4.4:21699025-21699044 | None:intergenic | 20.0% |
| ! | AAGCTATTCTGTTTAATCTA+TGG | - | chr4.4:21699095-21699114 | MS.gene053627:intron | 25.0% |
| ! | AATACATGATAAGGAAAACT+TGG | - | chr4.4:21697004-21697023 | MS.gene053627:intron | 25.0% |
| ! | AATCAATTGCAAATAAGAGA+AGG | + | chr4.4:21697647-21697666 | None:intergenic | 25.0% |
| ! | ACATACATTATAAGAAAGGA+AGG | - | chr4.4:21698900-21698919 | MS.gene053627:intron | 25.0% |
| ! | AGTTTGAGAATATATATTCG+AGG | - | chr4.4:21697045-21697064 | MS.gene053627:intron | 25.0% |
| ! | GATTTGCAAGAAATAAAATG+TGG | - | chr4.4:21697881-21697900 | MS.gene053627:intron | 25.0% |
| ! | TAAGATATATGTGTTATGCA+TGG | + | chr4.4:21697810-21697829 | None:intergenic | 25.0% |
| ! | TATGGTAATTTCCTTGATAT+TGG | - | chr4.4:21699128-21699147 | MS.gene053627:intron | 25.0% |
| ! | TATGTATGTATACTTCTTCA+GGG | - | chr4.4:21698432-21698451 | MS.gene053627:intron | 25.0% |
| ! | TTGAAAACCTCTTTATTCAT+AGG | + | chr4.4:21698794-21698813 | None:intergenic | 25.0% |
| ! | TTTCATTCCATGTTAATAGA+CGG | + | chr4.4:21698066-21698085 | None:intergenic | 25.0% |
| !! | ATCTTTCTTTTCTTGCAATT+AGG | - | chr4.4:21697081-21697100 | MS.gene053627:intron | 25.0% |
| !! | GCCTCTTTAAAAAGAAATAT+TGG | + | chr4.4:21697605-21697624 | None:intergenic | 25.0% |
| !! | GTCTCAAATCTCAATAATTT+TGG | - | chr4.4:21697760-21697779 | MS.gene053627:intron | 25.0% |
| !! | GTTGATTGATTTATTTGCAT+CGG | - | chr4.4:21696931-21696950 | MS.gene053627:CDS | 25.0% |
| !!! | ATCTATGGTATGTAGTTTTA+TGG | - | chr4.4:21699110-21699129 | MS.gene053627:intron | 25.0% |
| !!! | ATTCATGAGCAATTGTTTTA+TGG | + | chr4.4:21698032-21698051 | None:intergenic | 25.0% |
| !!! | GACAATCATTTCTTTTTTTG+AGG | - | chr4.4:21698338-21698357 | MS.gene053627:intron | 25.0% |
| !!! | TAAGCTTTTATTTTTGGTTG+TGG | - | chr4.4:21698745-21698764 | MS.gene053627:intron | 25.0% |
| !!! | TTGTGTTTTTTGTTACTTTG+GGG | + | chr4.4:21699024-21699043 | None:intergenic | 25.0% |
| AAACAAATGCTTTGTGTAGA+TGG | - | chr4.4:21699245-21699264 | MS.gene053627:intron | 30.0% | |
| ACGGACATACATTATAAGAA+AGG | - | chr4.4:21698896-21698915 | MS.gene053627:intron | 30.0% | |
| ATAAGTGCAAAAGAAAACGA+GGG | - | chr4.4:21697445-21697464 | MS.gene053627:intron | 30.0% | |
| CAATCAAGTTAATACCTATG+TGG | + | chr4.4:21698009-21698028 | None:intergenic | 30.0% | |
| CTATGTATGTATACTTCTTC+AGG | - | chr4.4:21698431-21698450 | MS.gene053627:intron | 30.0% | |
| GAATTTACAAAGGACTTGAA+TGG | - | chr4.4:21696852-21696871 | MS.gene053627:CDS | 30.0% | |
| GTAGTAATTAGTTATACCTG+TGG | + | chr4.4:21697725-21697744 | None:intergenic | 30.0% | |
| GTAGTGTACAAGAAAAAAGA+TGG | + | chr4.4:21698382-21698401 | None:intergenic | 30.0% | |
| TATAAGTGCAAAAGAAAACG+AGG | - | chr4.4:21697444-21697463 | MS.gene053627:intron | 30.0% | |
| TATACCTGTGGAAAACATAT+TGG | + | chr4.4:21697713-21697732 | None:intergenic | 30.0% | |
| TATGCGAATGAGAAACTAAA+TGG | + | chr4.4:21698263-21698282 | None:intergenic | 30.0% | |
| TCATAATAGTTTGGAAACTG+TGG | - | chr4.4:21697841-21697860 | MS.gene053627:intron | 30.0% | |
| TCTATATTTCCATATCCTGT+CGG | + | chr4.4:21697575-21697594 | None:intergenic | 30.0% | |
| TGAATTAATATCCAACTCTG+TGG | + | chr4.4:21697543-21697562 | None:intergenic | 30.0% | |
| TGTACAAGAAAAAAGATGGT+TGG | + | chr4.4:21698378-21698397 | None:intergenic | 30.0% | |
| TGTTATGAAATACATATCCG+CGG | + | chr4.4:21697308-21697327 | None:intergenic | 30.0% | |
| TTGATTGTAGACACTTTCAA+AGG | - | chr4.4:21697661-21697680 | MS.gene053627:intron | 30.0% | |
| ! | AATTCCAATATGTTTTCCAC+AGG | - | chr4.4:21697706-21697725 | MS.gene053627:intron | 30.0% |
| ! | ATCAAAAATGAGTTTTTCCG+CGG | - | chr4.4:21697288-21697307 | MS.gene053627:CDS | 30.0% |
| ! | GATTTTCCATTGGAATCATT+TGG | + | chr4.4:21697937-21697956 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTACTTTGG+GGG | + | chr4.4:21699023-21699042 | None:intergenic | 30.0% |
| AACCTCTTTATTCATAGGCT+AGG | + | chr4.4:21698789-21698808 | None:intergenic | 35.0% | |
| ACTACAAATTTCCGCAGAAA+TGG | - | chr4.4:21697370-21697389 | MS.gene053627:intron | 35.0% | |
| AGCAGCAACTGAATTTACAA+AGG | - | chr4.4:21696842-21696861 | MS.gene053627:CDS | 35.0% | |
| ATTAATATCCAACTCTGTGG+TGG | + | chr4.4:21697540-21697559 | None:intergenic | 35.0% | |
| ATTCACTCCGTCTATTAACA+TGG | - | chr4.4:21698056-21698075 | MS.gene053627:intron | 35.0% | |
| CAAATAGCATACCAACATCA+GGG | + | chr4.4:21698929-21698948 | None:intergenic | 35.0% | |
| CAGAAACCAACAAGTATGTA+TGG | + | chr4.4:21698286-21698305 | None:intergenic | 35.0% | |
| CTTCAGATAATTTGAGTAGC+AGG | + | chr4.4:21697969-21697988 | None:intergenic | 35.0% | |
| GAATGAGAAACTAAATGGCT+TGG | + | chr4.4:21698258-21698277 | None:intergenic | 35.0% | |
| GTACACTACAAATTGACTGT+TGG | - | chr4.4:21698393-21698412 | MS.gene053627:intron | 35.0% | |
| TACCTCGGATTCAAATGTTA+TGG | + | chr4.4:21698664-21698683 | None:intergenic | 35.0% | |
| TATAGTGAGATAAGGGTTGA+AGG | - | chr4.4:21698573-21698592 | MS.gene053627:intron | 35.0% | |
| TGCAATTAGGTAAGCTTACA+TGG | - | chr4.4:21697094-21697113 | MS.gene053627:intron | 35.0% | |
| TTCTAGATCATGAGAGGAAA+CGG | - | chr4.4:21698877-21698896 | MS.gene053627:intron | 35.0% | |
| TTGGTTTCTGACATAAGGTA+TGG | - | chr4.4:21698296-21698315 | MS.gene053627:CDS | 35.0% | |
| TTTCCATTGGAATCATTTGG+AGG | + | chr4.4:21697934-21697953 | None:intergenic | 35.0% | |
| ! | ATTTCCTTGATATTGGTGAC+AGG | - | chr4.4:21699135-21699154 | MS.gene053627:intron | 35.0% |
| ! | GAATCGATCAAGTTGTACTT+CGG | - | chr4.4:21696874-21696893 | MS.gene053627:CDS | 35.0% |
| ! | GGTATGGATTTGTTTACTGT+CGG | - | chr4.4:21697223-21697242 | MS.gene053627:intron | 35.0% |
| ! | TAGACATGTGAAAGTGTGAA+TGG | - | chr4.4:21697507-21697526 | MS.gene053627:intron | 35.0% |
| ! | TCTAGAACTGCGATTATGTT+TGG | + | chr4.4:21698864-21698883 | None:intergenic | 35.0% |
| !! | ACTTGTTGGTTTCTGACATA+AGG | - | chr4.4:21698291-21698310 | MS.gene053627:CDS | 35.0% |
| !! | TTCTGTAACTCGTGCTTTTT+GGG | + | chr4.4:21698631-21698650 | None:intergenic | 35.0% |
| AAAGAAAACGAGGGAAGAGA+AGG | - | chr4.4:21697454-21697473 | MS.gene053627:intron | 40.0% | |
| AAAGCACGAGTTACAGAACA+AGG | - | chr4.4:21698633-21698652 | MS.gene053627:intron | 40.0% | |
| AACTCAAAACTGGTGCAATG+GGG | + | chr4.4:21698167-21698186 | None:intergenic | 40.0% | |
| AGAACCCACAAGATTTACCT+CGG | + | chr4.4:21698679-21698698 | None:intergenic | 40.0% | |
| ATTCCTCACTCGTGATATCA+GGG | + | chr4.4:21698228-21698247 | None:intergenic | 40.0% | |
| CAGAAATGGAATGAGTTCAG+TGG | - | chr4.4:21697384-21697403 | MS.gene053627:intron | 40.0% | |
| CGCATACCATACATACTTGT+TGG | - | chr4.4:21698277-21698296 | MS.gene053627:CDS | 40.0% | |
| CGGTCACTACAAAAACTTGA+TGG | + | chr4.4:21699344-21699363 | None:intergenic | 40.0% | |
| CTGAACTCATTCCATTTCTG+CGG | + | chr4.4:21697384-21697403 | None:intergenic | 40.0% | |
| GAACTCAAAACTGGTGCAAT+GGG | + | chr4.4:21698168-21698187 | None:intergenic | 40.0% | |
| GAATCCGAGGTAAATCTTGT+GGG | - | chr4.4:21698672-21698691 | MS.gene053627:intron | 40.0% | |
| GCAAATAGCATACCAACATC+AGG | + | chr4.4:21698930-21698949 | None:intergenic | 40.0% | |
| GTCCTAGCCTATGAATAAAG+AGG | - | chr4.4:21698784-21698803 | MS.gene053627:intron | 40.0% | |
| TATTCCTCACTCGTGATATC+AGG | + | chr4.4:21698229-21698248 | None:intergenic | 40.0% | |
| TCAGCTTCAAACAACCAAAG+TGG | + | chr4.4:21698124-21698143 | None:intergenic | 40.0% | |
| TCTTGAGACACTTGATTACC+TGG | - | chr4.4:21698596-21698615 | MS.gene053627:intron | 40.0% | |
| TGAATCCGAGGTAAATCTTG+TGG | - | chr4.4:21698671-21698690 | MS.gene053627:intron | 40.0% | |
| TGCCATAACATTTGAATCCG+AGG | - | chr4.4:21698659-21698678 | MS.gene053627:intron | 40.0% | |
| TTGCCTCCAAATGATTCCAA+TGG | - | chr4.4:21697928-21697947 | MS.gene053627:CDS | 40.0% | |
| TTGGAATCATTTGGAGGCAA+AGG | + | chr4.4:21697928-21697947 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTAGTGACCGACT+AGG | - | chr4.4:21699347-21699366 | MS.gene053627:CDS | 40.0% |
| ! | ATTCCTCCTCGTATTGCTTT+TGG | + | chr4.4:21697689-21697708 | None:intergenic | 40.0% |
| ! | GTCGACAAAGGATTTTCCAT+TGG | + | chr4.4:21697947-21697966 | None:intergenic | 40.0% |
| ! | GTTCTGTAACTCGTGCTTTT+TGG | + | chr4.4:21698632-21698651 | None:intergenic | 40.0% |
| !! | GTTCTTCTTTTCTGCCACTT+TGG | - | chr4.4:21698107-21698126 | MS.gene053627:intron | 40.0% |
| !! | TAACTCGTGCTTTTTGGGAA+AGG | + | chr4.4:21698626-21698645 | None:intergenic | 40.0% |
| AAACCTGTGAACTTGAAGCC+TGG | - | chr4.4:21699281-21699300 | MS.gene053627:CDS | 45.0% | |
| AATTCAGCGAAAACTCCGAC+AGG | - | chr4.4:21697557-21697576 | MS.gene053627:CDS | 45.0% | |
| ACTGCTATTCACAAGCTGCA+AGG | - | chr4.4:21697156-21697175 | MS.gene053627:intron | 45.0% | |
| ATAAACACGATCCACCTGCT+CGG | + | chr4.4:21698832-21698851 | None:intergenic | 45.0% | |
| CCAAAACTATCAGGGTGAGA+AGG | + | chr4.4:21698504-21698523 | None:intergenic | 45.0% | |
| CTGAAGAAGATGTGAAGTGC+TGG | - | chr4.4:21697983-21698002 | MS.gene053627:CDS | 45.0% | |
| GAAGAAATCGAAGTCGATGG+TGG | - | chr4.4:21699202-21699221 | MS.gene053627:intron | 45.0% | |
| GAATCATTTGGAGGCAAAGG+AGG | + | chr4.4:21697925-21697944 | None:intergenic | 45.0% | |
| GACTTCGATTTCTTCTCCCA+TGG | + | chr4.4:21699197-21699216 | None:intergenic | 45.0% | |
| GGAACTCAAAACTGGTGCAA+TGG | + | chr4.4:21698169-21698188 | None:intergenic | 45.0% | |
| GGAGAAGAAATCGAAGTCGA+TGG | - | chr4.4:21699199-21699218 | MS.gene053627:intron | 45.0% | |
| TAACCCTGATATCACGAGTG+AGG | - | chr4.4:21698222-21698241 | MS.gene053627:CDS | 45.0% | |
| TCACTCGTGATATCAGGGTT+AGG | + | chr4.4:21698223-21698242 | None:intergenic | 45.0% | |
| TCAGCCTGTCACCAATATCA+AGG | + | chr4.4:21699142-21699161 | None:intergenic | 45.0% | |
| TTTGAGTAGCAGGTCGACAA+AGG | + | chr4.4:21697959-21697978 | None:intergenic | 45.0% | |
| ! | CCTTCTCACCCTGATAGTTT+TGG | - | chr4.4:21698501-21698520 | MS.gene053627:CDS | 45.0% |
| !! | CTTTTTGGGAAAGGTTGTCC+AGG | + | chr4.4:21698617-21698636 | None:intergenic | 45.0% |
| !! | GTTTACTGTCGGTGCTAATC+AGG | - | chr4.4:21697234-21697253 | MS.gene053627:intron | 45.0% |
| !! | TCGCAGTTCTAGATCATGAG+AGG | - | chr4.4:21698871-21698890 | MS.gene053627:intron | 45.0% |
| AAGGAAGGTCTCCCTGATGT+TGG | - | chr4.4:21698915-21698934 | MS.gene053627:intron | 50.0% | |
| ACTTCATGGCGCAATGAGCA+GGG | - | chr4.4:21697127-21697146 | MS.gene053627:intron | 50.0% | |
| CACTTCTGTCGAGACCTAGT+CGG | + | chr4.4:21699364-21699383 | None:intergenic | 50.0% | |
| CGAGTGTCTCTTACGACAGA+TGG | - | chr4.4:21698194-21698213 | MS.gene053627:CDS | 50.0% | |
| CGTGACATCAAAGCCGAACA+AGG | - | chr4.4:21699054-21699073 | MS.gene053627:CDS | 50.0% | |
| CTGTCGTAAGAGACACTCGA+AGG | + | chr4.4:21698193-21698212 | None:intergenic | 50.0% | |
| CTTCTCCCATGGATTCCACA+CGG | + | chr4.4:21699186-21699205 | None:intergenic | 50.0% | |
| GCATTCAACCACCACAGAGT+TGG | - | chr4.4:21697529-21697548 | MS.gene053627:CDS | 50.0% | |
| GCGAAAACTCCGACAGGATA+TGG | - | chr4.4:21697563-21697582 | MS.gene053627:CDS | 50.0% | |
| GTTTGGAAACTGTGGATCGC+TGG | - | chr4.4:21697849-21697868 | MS.gene053627:intron | 50.0% | |
| TCATTTGGAGGCAAAGGAGG+AGG | + | chr4.4:21697922-21697941 | None:intergenic | 50.0% | |
| TCGAAGGCGGAACTCAAAAC+TGG | + | chr4.4:21698177-21698196 | None:intergenic | 50.0% | |
| TCGTAAGAGACACTCGAAGG+CGG | + | chr4.4:21698190-21698209 | None:intergenic | 50.0% | |
| TGTGAACTTGAAGCCTGGAG+AGG | - | chr4.4:21699286-21699305 | MS.gene053627:CDS | 50.0% | |
| TGTTTCTTTGTGCAGCCGTG+TGG | - | chr4.4:21699168-21699187 | MS.gene053627:intron | 50.0% | |
| ! | AAGGCGCCAAAAGCAATACG+AGG | - | chr4.4:21697680-21697699 | MS.gene053627:intron | 50.0% |
| ! | TCTCCAGGCTTCAAGTTCAC+AGG | + | chr4.4:21699287-21699306 | None:intergenic | 50.0% |
| !! | ATGTGAAGTGCTGGCCACAT+AGG | - | chr4.4:21697992-21698011 | MS.gene053627:CDS | 50.0% |
| !! | TCGAAGTCGATGGTGGACTT+TGG | - | chr4.4:21699209-21699228 | MS.gene053627:intron | 50.0% |
| ACTTGAAGCCTGGAGAGGAG+TGG | - | chr4.4:21699291-21699310 | MS.gene053627:CDS | 55.0% | |
| ATGGAGCGCAGGTCACTTCA+TGG | - | chr4.4:21697113-21697132 | MS.gene053627:intron | 55.0% | |
| CACTTCATGGCGCAATGAGC+AGG | - | chr4.4:21697126-21697145 | MS.gene053627:intron | 55.0% | |
| CGACTAGGTCTCGACAGAAG+TGG | - | chr4.4:21699362-21699381 | MS.gene053627:CDS | 55.0% | |
| CTTCATGGCGCAATGAGCAG+GGG | - | chr4.4:21697128-21697147 | MS.gene053627:intron | 55.0% | |
| GATCCACCTGCTCGGAAGAA+AGG | + | chr4.4:21698824-21698843 | None:intergenic | 55.0% | |
| GATCCTTTCTTCCGAGCAGG+TGG | - | chr4.4:21698818-21698837 | MS.gene053627:intron | 55.0% | |
| GCGCCAAAAGCAATACGAGG+AGG | - | chr4.4:21697683-21697702 | MS.gene053627:intron | 55.0% | |
| GGTAAGCTTACATGGAGCGC+AGG | - | chr4.4:21697102-21697121 | MS.gene053627:intron | 55.0% | |
| GTCGATCCTTTCTTCCGAGC+AGG | - | chr4.4:21698815-21698834 | MS.gene053627:intron | 55.0% | |
| GTTGTACTTCGGACCCCACA+AGG | - | chr4.4:21696885-21696904 | MS.gene053627:CDS | 55.0% | |
| TGCAGCCGTGTGGAATCCAT+GGG | - | chr4.4:21699178-21699197 | MS.gene053627:intron | 55.0% | |
| TTCATGGCGCAATGAGCAGG+GGG | - | chr4.4:21697129-21697148 | MS.gene053627:intron | 55.0% | |
| AAGCCTGGAGAGGAGTGGAC+AGG | - | chr4.4:21699296-21699315 | MS.gene053627:CDS | 60.0% | |
| AGCCTGGAGAGGAGTGGACA+GGG | - | chr4.4:21699297-21699316 | MS.gene053627:CDS | 60.0% | |
| GTGCAGCCGTGTGGAATCCA+TGG | - | chr4.4:21699177-21699196 | MS.gene053627:intron | 60.0% | |
| TGTGGATCGCTGGAGCTGCA+TGG | - | chr4.4:21697859-21697878 | MS.gene053627:intron | 60.0% | |
| CTCCCTGTCCACTCCTCTCC+AGG | + | chr4.4:21699302-21699321 | None:intergenic | 65.0% | |
| CTGGAGAGGAGTGGACAGGG+AGG | - | chr4.4:21699300-21699319 | MS.gene053627:CDS | 65.0% | |
| ! | GGGGCATTCGGCAGCTGTGT+GGG | - | chr4.4:21696812-21696831 | MS.gene053627:CDS | 65.0% |
| ! | TCGGACCCCACAAGGCGCTT+CGG | - | chr4.4:21696893-21696912 | MS.gene053627:CDS | 65.0% |
| ! | TGGGGCATTCGGCAGCTGTG+TGG | - | chr4.4:21696811-21696830 | MS.gene053627:CDS | 65.0% |
| ! | ACCCGTGCCGAAGCGCCTTG+TGG | + | chr4.4:21696903-21696922 | None:intergenic | 70.0% |
| ! | CCCACAAGGCGCTTCGGCAC+GGG | - | chr4.4:21696899-21696918 | MS.gene053627:CDS | 70.0% |
| ! | CCCCACAAGGCGCTTCGGCA+CGG | - | chr4.4:21696898-21696917 | MS.gene053627:CDS | 70.0% |
| ! | CCCGTGCCGAAGCGCCTTGT+GGG | + | chr4.4:21696902-21696921 | None:intergenic | 70.0% |
| ! | CCGTGCCGAAGCGCCTTGTG+GGG | + | chr4.4:21696901-21696920 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21696810 | 21699391 | 21696810 | ID=MS.gene053627 |
| chr4.4 | mRNA | 21696810 | 21699391 | 21696810 | ID=MS.gene053627.t1;Parent=MS.gene053627 |
| chr4.4 | exon | 21699281 | 21699391 | 21699281 | ID=MS.gene053627.t1.exon1;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21699281 | 21699391 | 21699281 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21699024 | 21699098 | 21699024 | ID=MS.gene053627.t1.exon2;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21699024 | 21699098 | 21699024 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21698474 | 21698530 | 21698474 | ID=MS.gene053627.t1.exon3;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21698474 | 21698530 | 21698474 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21698188 | 21698351 | 21698188 | ID=MS.gene053627.t1.exon4;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21698188 | 21698351 | 21698188 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21697889 | 21698023 | 21697889 | ID=MS.gene053627.t1.exon5;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21697889 | 21698023 | 21697889 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21697521 | 21697623 | 21697521 | ID=MS.gene053627.t1.exon6;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21697521 | 21697623 | 21697521 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21697265 | 21697364 | 21697265 | ID=MS.gene053627.t1.exon7;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21697265 | 21697364 | 21697265 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| chr4.4 | exon | 21696810 | 21697018 | 21696810 | ID=MS.gene053627.t1.exon8;Parent=MS.gene053627.t1 |
| chr4.4 | CDS | 21696810 | 21697018 | 21696810 | ID=cds.MS.gene053627.t1;Parent=MS.gene053627.t1 |
| Gene Sequence |
| Protein sequence |
