Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90270.t1 | XP_003608337.1 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90270.t1 | Q40784 | 64.4 | 298 | 103 | 2 | 15 | 310 | 25 | 321 | 9.0e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90270.t1 | G7JU00 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 7.9e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053627 | MS.gene90270 | 0.895404 | 9.90E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037013 | MS.gene90270 | PPI |
| MS.gene57695 | MS.gene90270 | PPI |
| MS.gene053078 | MS.gene90270 | PPI |
| MS.gene90270 | MS.gene053078 | PPI |
| MS.gene032655 | MS.gene90270 | PPI |
| MS.gene21644 | MS.gene90270 | PPI |
| MS.gene73340 | MS.gene90270 | PPI |
| MS.gene024663 | MS.gene90270 | PPI |
| MS.gene060400 | MS.gene90270 | PPI |
| MS.gene82807 | MS.gene90270 | PPI |
| MS.gene072750 | MS.gene90270 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90270.t1 | MTR_4g092780 | 98.423 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 0.0 | 646 |
| MS.gene90270.t1 | MTR_7g116910 | 89.841 | 315 | 32 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MS.gene90270.t1 | MTR_5g009670 | 73.443 | 305 | 79 | 2 | 1 | 304 | 1 | 304 | 1.28e-169 | 473 |
| MS.gene90270.t1 | MTR_2g036810 | 66.113 | 301 | 99 | 2 | 16 | 314 | 14 | 313 | 5.09e-153 | 431 |
| MS.gene90270.t1 | MTR_4g005740 | 63.823 | 293 | 103 | 2 | 20 | 310 | 14 | 305 | 9.77e-143 | 405 |
| MS.gene90270.t1 | MTR_5g009670 | 71.200 | 250 | 70 | 2 | 1 | 249 | 1 | 249 | 2.48e-130 | 372 |
| MS.gene90270.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 7 | 295 | 8.32e-118 | 342 |
| MS.gene90270.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 65 | 353 | 2.41e-117 | 343 |
| MS.gene90270.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 54 | 342 | 2.51e-117 | 342 |
| MS.gene90270.t1 | MTR_5g020640 | 31.673 | 281 | 172 | 7 | 23 | 301 | 50 | 312 | 3.45e-34 | 127 |
| MS.gene90270.t1 | MTR_5g020640 | 35.260 | 173 | 103 | 4 | 23 | 195 | 50 | 213 | 5.35e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90270.t1 | AT3G61610 | 73.817 | 317 | 83 | 0 | 1 | 317 | 1 | 317 | 0.0 | 504 |
| MS.gene90270.t1 | AT3G61610 | 73.955 | 311 | 81 | 0 | 7 | 317 | 1 | 311 | 1.20e-178 | 496 |
| MS.gene90270.t1 | AT4G23730 | 65.763 | 295 | 100 | 1 | 11 | 304 | 12 | 306 | 1.87e-153 | 432 |
| MS.gene90270.t1 | AT4G23730 | 64.452 | 301 | 100 | 2 | 11 | 304 | 12 | 312 | 7.80e-151 | 426 |
| MS.gene90270.t1 | AT5G57330 | 63.576 | 302 | 107 | 2 | 11 | 310 | 5 | 305 | 7.05e-148 | 418 |
| MS.gene90270.t1 | AT4G23730 | 67.658 | 269 | 86 | 1 | 37 | 304 | 3 | 271 | 3.11e-143 | 405 |
| MS.gene90270.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene90270.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene90270.t1 | AT5G14500 | 59.932 | 292 | 114 | 2 | 19 | 310 | 8 | 296 | 4.29e-131 | 375 |
| MS.gene90270.t1 | AT5G14500 | 55.205 | 317 | 114 | 3 | 19 | 310 | 8 | 321 | 1.31e-124 | 360 |
| MS.gene90270.t1 | AT4G25900 | 50.000 | 290 | 139 | 2 | 15 | 304 | 32 | 315 | 6.85e-109 | 320 |
| MS.gene90270.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 19 | 278 | 1.51e-36 | 132 |
| MS.gene90270.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene90270.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene90270.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCTCGTATTGCTTT+TGG | 0.257552 | 4.2:+20306908 | None:intergenic |
| TATTCCTCACTCGTGATATC+AGG | 0.261723 | 4.2:+20306368 | None:intergenic |
| CGCATACCATACATACTTGT+TGG | 0.306903 | 4.2:-20306317 | MS.gene90270:CDS |
| TATGCGAATGAGAAACTAAA+TGG | 0.347249 | 4.2:+20306334 | None:intergenic |
| TATACCTGTGGAAAACATAT+TGG | 0.354365 | 4.2:+20306884 | None:intergenic |
| CCCGTGCCGAAGCGCCTTGT+GGG | 0.355163 | 4.2:+20307694 | None:intergenic |
| TGCAATTAGGTAAGCTTACA+TGG | 0.360588 | 4.2:-20307499 | MS.gene90270:intron |
| TCTAGAACTGCGATTATGTT+TGG | 0.370057 | 4.2:+20305733 | None:intergenic |
| TACCTCGGATTCAAATGTTA+TGG | 0.374354 | 4.2:+20305933 | None:intergenic |
| CTCCCTGTCCACTCCTCTCC+AGG | 0.395754 | 4.2:+20305295 | None:intergenic |
| CACTTCATGGCGTAATGAGC+AGG | 0.401746 | 4.2:-20307467 | MS.gene90270:CDS |
| AAAATTTGTATAGTGAGATA+AGG | 0.404611 | 4.2:-20306029 | MS.gene90270:intron |
| CTTCAGATAATTTGAGTAGC+AGG | 0.408420 | 4.2:+20306628 | None:intergenic |
| ACTTGTTGGTTTCTGACATA+AGG | 0.410514 | 4.2:-20306303 | MS.gene90270:intron |
| AAATTTGTATAGTGAGATAA+GGG | 0.410995 | 4.2:-20306028 | MS.gene90270:intron |
| AAACAAATGCTTTGTGTAGA+TGG | 0.429208 | 4.2:-20305349 | MS.gene90270:CDS |
| GCAAATAGCATACCAACATC+AGG | 0.441237 | 4.2:+20305667 | None:intergenic |
| ATGGAGCGCAGGTCACTTCA+TGG | 0.445349 | 4.2:-20307480 | MS.gene90270:CDS |
| GAATTTACAAAGGACTTGAA+TGG | 0.456569 | 4.2:-20307741 | MS.gene90270:CDS |
| TCTCCAGGCTTCAAGTTCAC+AGG | 0.459284 | 4.2:+20305310 | None:intergenic |
| ACCCGTGCCGAAGCGCCTTG+TGG | 0.465263 | 4.2:+20307693 | None:intergenic |
| GACTTCGATTTCTTCTCCCA+TGG | 0.466878 | 4.2:+20305400 | None:intergenic |
| CAGAAACCAACAAGTATGTA+TGG | 0.472937 | 4.2:+20306311 | None:intergenic |
| AAGCCTGGAGAGGAGTGGAC+AGG | 0.473546 | 4.2:-20305298 | MS.gene90270:CDS |
| TTCTAGATCATGAGAGGAAA+CGG | 0.476080 | 4.2:-20305717 | MS.gene90270:CDS |
| TCACTCGTGATATCAGGGTT+AGG | 0.481124 | 4.2:+20306374 | None:intergenic |
| CCCCACAAGGCGCTTCGGCA+CGG | 0.482644 | 4.2:-20307695 | MS.gene90270:CDS |
| GGGGCATTCGGCAGCTGTGT+GGG | 0.490352 | 4.2:-20307781 | MS.gene90270:CDS |
| GTTTGGAAACTGTGGATCGC+TGG | 0.500146 | 4.2:-20306745 | MS.gene90270:CDS |
| TCGAAGTCGATGGTGGACTT+TGG | 0.502611 | 4.2:-20305385 | MS.gene90270:CDS |
| TATAGTGAGATAAGGGTTGA+AGG | 0.506399 | 4.2:-20306021 | MS.gene90270:intron |
| TCGGACCCCACAAGGCGCTT+CGG | 0.506831 | 4.2:-20307700 | MS.gene90270:CDS |
| AAACCTGTGAACTTGAAGCC+TGG | 0.507242 | 4.2:-20305313 | MS.gene90270:CDS |
| GTGCAGCCGTGTGGAATCCA+TGG | 0.507273 | 4.2:-20305417 | MS.gene90270:intron |
| AGCCTGGAGAGGAGTGGACA+GGG | 0.507327 | 4.2:-20305297 | MS.gene90270:CDS |
| CCCACAAGGCGCTTCGGCAC+GGG | 0.509186 | 4.2:-20307694 | MS.gene90270:intron |
| TCATTTGGAGGCAAAGGAGG+AGG | 0.514508 | 4.2:+20306675 | None:intergenic |
| TTGGAATCATTTGGAGGCAA+AGG | 0.515039 | 4.2:+20306669 | None:intergenic |
| CGAGTGTCTCTTACGACAGA+TGG | 0.533298 | 4.2:-20306400 | MS.gene90270:CDS |
| ACGGACATACATTATAAGAA+AGG | 0.533476 | 4.2:-20305698 | MS.gene90270:CDS |
| TCATAATAGTTTGGAAACTG+TGG | 0.533947 | 4.2:-20306753 | MS.gene90270:intron |
| TTGCCTCCAAATGATTCCAA+TGG | 0.540698 | 4.2:-20306666 | MS.gene90270:CDS |
| TTTCCATTGGAATCATTTGG+AGG | 0.543188 | 4.2:+20306663 | None:intergenic |
| TGGGGCATTCGGCAGCTGTG+TGG | 0.545391 | 4.2:-20307782 | MS.gene90270:CDS |
| GAATGAGAAACTAAATGGCT+TGG | 0.548213 | 4.2:+20306339 | None:intergenic |
| TCTTGAGACACTTGATTACC+TGG | 0.549791 | 4.2:-20305998 | MS.gene90270:CDS |
| CTTCTCCCATGGATTCCACA+CGG | 0.552012 | 4.2:+20305411 | None:intergenic |
| ATGTGAAGTGCTGGCCACAT+AGG | 0.567231 | 4.2:-20306602 | MS.gene90270:intron |
| GAATCATTTGGAGGCAAAGG+AGG | 0.570451 | 4.2:+20306672 | None:intergenic |
| TGTGGATCGCTGGAGCTGCA+TGG | 0.572350 | 4.2:-20306735 | MS.gene90270:CDS |
| TGCCATAACATTTGAATCCG+AGG | 0.572417 | 4.2:-20305935 | MS.gene90270:intron |
| TTGATTGTAGACACTTTCAA+AGG | 0.575710 | 4.2:-20306933 | MS.gene90270:intron |
| ATTCCTCACTCGTGATATCA+GGG | 0.579407 | 4.2:+20306369 | None:intergenic |
| CTGAAGAAGATGTGAAGTGC+TGG | 0.583076 | 4.2:-20306611 | MS.gene90270:CDS |
| ACTTCATGGCGTAATGAGCA+GGG | 0.587126 | 4.2:-20307466 | MS.gene90270:CDS |
| GGTAAGCTTACATGGAGCGC+AGG | 0.592548 | 4.2:-20307491 | MS.gene90270:CDS |
| AAGGAAGGTCTCCCTGATGT+TGG | 0.594415 | 4.2:-20305679 | MS.gene90270:intron |
| GATTTGCAAGAAATAAAATG+TGG | 0.594654 | 4.2:-20306713 | MS.gene90270:CDS |
| TTTGAGTAGCAGGTCGACAA+AGG | 0.600438 | 4.2:+20306638 | None:intergenic |
| CCGTGCCGAAGCGCCTTGTG+GGG | 0.608350 | 4.2:+20307695 | None:intergenic |
| GAATCGATCAAGTTGTACTT+CGG | 0.613420 | 4.2:-20307719 | MS.gene90270:CDS |
| GAAGAAATCGAAGTCGATGG+TGG | 0.614525 | 4.2:-20305392 | MS.gene90270:CDS |
| TGTGAACTTGAAGCCTGGAG+AGG | 0.615658 | 4.2:-20305308 | MS.gene90270:CDS |
| CAATCAAGTTAATACCTATG+TGG | 0.617553 | 4.2:+20306588 | None:intergenic |
| ACTTGAAGCCTGGAGAGGAG+TGG | 0.621676 | 4.2:-20305303 | MS.gene90270:CDS |
| ACATACATTATAAGAAAGGA+AGG | 0.622005 | 4.2:-20305694 | MS.gene90270:CDS |
| ATTTGCAAGAAATAAAATGT+GGG | 0.626744 | 4.2:-20306712 | MS.gene90270:CDS |
| CGACTAGGTCTCGACAGAAG+TGG | 0.627675 | 4.2:-20305232 | MS.gene90270:CDS |
| CAAATAGCATACCAACATCA+GGG | 0.631758 | 4.2:+20305668 | None:intergenic |
| ACTGCTATTCACAAGCTGCA+AGG | 0.635776 | 4.2:-20307437 | MS.gene90270:intron |
| GGAGAAGAAATCGAAGTCGA+TGG | 0.636854 | 4.2:-20305395 | MS.gene90270:CDS |
| CTGGAGAGGAGTGGACAGGG+AGG | 0.637296 | 4.2:-20305294 | MS.gene90270:CDS |
| TCGCAGTTCTAGATCATGAG+AGG | 0.640361 | 4.2:-20305723 | MS.gene90270:CDS |
| GTTGTACTTCGGACCCCACA+AGG | 0.644189 | 4.2:-20307708 | MS.gene90270:CDS |
| TGCAGCCGTGTGGAATCCAT+GGG | 0.655533 | 4.2:-20305416 | MS.gene90270:intron |
| TGTTTCTTTGTGCAGCCGTG+TGG | 0.657679 | 4.2:-20305426 | MS.gene90270:intron |
| AAAGCACGAGTTACAGAACA+AGG | 0.658067 | 4.2:-20305961 | MS.gene90270:CDS |
| TTCATGGCGTAATGAGCAGG+GGG | 0.663337 | 4.2:-20307464 | MS.gene90270:CDS |
| TCGTAAGAGACACTCGAAGG+CGG | 0.666141 | 4.2:+20306407 | None:intergenic |
| CTTCATGGCGTAATGAGCAG+GGG | 0.667301 | 4.2:-20307465 | MS.gene90270:CDS |
| AGCAGCAACTGAATTTACAA+AGG | 0.671488 | 4.2:-20307751 | MS.gene90270:CDS |
| CACTTCTGTCGAGACCTAGT+CGG | 0.679916 | 4.2:+20305233 | None:intergenic |
| TAACCCTGATATCACGAGTG+AGG | 0.687144 | 4.2:-20306372 | MS.gene90270:CDS |
| GCGCCAAAAGCAATACGAGG+AGG | 0.709878 | 4.2:-20306911 | MS.gene90270:CDS |
| CTGTCGTAAGAGACACTCGA+AGG | 0.711416 | 4.2:+20306404 | None:intergenic |
| AAGGCGCCAAAAGCAATACG+AGG | 0.738080 | 4.2:-20306914 | MS.gene90270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTATTTTTATTTTTAGA+TGG | - | chr4.2:20305616-20305635 | MS.gene90270:intron | 10.0% |
| !! | GTTTATTAATGATAAATACT+TGG | - | chr4.2:20306868-20306887 | MS.gene90270:intron | 15.0% |
| !!! | AAAAACTCATTTTTGATAAT+AGG | + | chr4.2:20305699-20305718 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTTAGATGGTA+TGG | - | chr4.2:20305621-20305640 | MS.gene90270:intron | 15.0% |
| !!! | GTAAATTAAGCTTTTATTTT+TGG | - | chr4.2:20307153-20307172 | MS.gene90270:intron | 15.0% |
| !!! | TTTTCTTCAAATATGATAAT+TGG | - | chr4.2:20306947-20306966 | MS.gene90270:intron | 15.0% |
| !! | AAAATTTGTATAGTGAGATA+AGG | - | chr4.2:20306979-20306998 | MS.gene90270:intron | 20.0% |
| !! | AAATTTGTATAGTGAGATAA+GGG | - | chr4.2:20306980-20306999 | MS.gene90270:intron | 20.0% |
| !! | ATTTGCAAGAAATAAAATGT+GGG | - | chr4.2:20306296-20306315 | MS.gene90270:intron | 20.0% |
| !! | CCAAACTATTATGAAAATTT+AGG | + | chr4.2:20306249-20306268 | None:intergenic | 20.0% |
| !! | TAAAAGCTTAATTTACATCT+TGG | + | chr4.2:20307149-20307168 | None:intergenic | 20.0% |
| !! | TACTTTAATCTAAATGAAAC+AGG | + | chr4.2:20306201-20306220 | None:intergenic | 20.0% |
| !! | TATATATTCCAAAACTATCA+GGG | + | chr4.2:20306926-20306945 | None:intergenic | 20.0% |
| !! | TTATATATTCCAAAACTATC+AGG | + | chr4.2:20306927-20306946 | None:intergenic | 20.0% |
| !! | TTCAATATCAATACATGATA+AGG | - | chr4.2:20305410-20305429 | MS.gene90270:CDS | 20.0% |
| !!! | ACAATCATTTCTTTTTTTGA+GGG | - | chr4.2:20306753-20306772 | MS.gene90270:intron | 20.0% |
| !!! | ATTTGTGTTTTTTGTTACTT+TGG | + | chr4.2:20307440-20307459 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTCATAATAGTT+TGG | - | chr4.2:20306246-20306265 | MS.gene90270:intron | 20.0% |
| !!! | TAAACATTTAAAACCTTGTT+CGG | + | chr4.2:20307484-20307503 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTTGTTACTTT+GGG | + | chr4.2:20307439-20307458 | None:intergenic | 20.0% |
| ! | AAGCTATTCTGTTTAATCTA+TGG | - | chr4.2:20307509-20307528 | MS.gene90270:intron | 25.0% |
| ! | AATACATGATAAGGAAAACT+TGG | - | chr4.2:20305419-20305438 | MS.gene90270:intron | 25.0% |
| ! | AATCAATTGCAAATAAGAGA+AGG | + | chr4.2:20306061-20306080 | None:intergenic | 25.0% |
| ! | ACATACATTATAAGAAAGGA+AGG | - | chr4.2:20307314-20307333 | MS.gene90270:intron | 25.0% |
| ! | ACCAATATTTCTTTGTAAAG+AGG | - | chr4.2:20306015-20306034 | MS.gene90270:CDS | 25.0% |
| ! | AGTTTGAGAATATATAATCG+AGG | - | chr4.2:20305460-20305479 | MS.gene90270:intron | 25.0% |
| ! | GATTTGCAAGAAATAAAATG+TGG | - | chr4.2:20306295-20306314 | MS.gene90270:intron | 25.0% |
| ! | TAAGATATATGTGTTATGCA+TGG | + | chr4.2:20306224-20306243 | None:intergenic | 25.0% |
| ! | TATGGTAATTTCCTTGATAT+TGG | - | chr4.2:20307542-20307561 | MS.gene90270:intron | 25.0% |
| ! | TATGTATGTATACTTCTTCA+GGG | - | chr4.2:20306846-20306865 | MS.gene90270:intron | 25.0% |
| ! | TTGAAAACCTCTTTATTCAT+AGG | + | chr4.2:20307208-20307227 | None:intergenic | 25.0% |
| ! | TTTCATTCCATGTTAATAGA+CGG | + | chr4.2:20306480-20306499 | None:intergenic | 25.0% |
| !! | ATCTTTCTTTTCTTGCAATT+AGG | - | chr4.2:20305496-20305515 | MS.gene90270:intron | 25.0% |
| !! | GTTGATTGATTTATTTGCAT+CGG | - | chr4.2:20305346-20305365 | MS.gene90270:CDS | 25.0% |
| !!! | ATCTATGGTATGTAGTTTTA+TGG | - | chr4.2:20307524-20307543 | MS.gene90270:intron | 25.0% |
| !!! | ATTCATGAGCAATTGTTTTA+TGG | + | chr4.2:20306446-20306465 | None:intergenic | 25.0% |
| !!! | GACAATCATTTCTTTTTTTG+AGG | - | chr4.2:20306752-20306771 | MS.gene90270:intron | 25.0% |
| !!! | TAAGCTTTTATTTTTGGTTG+TGG | - | chr4.2:20307159-20307178 | MS.gene90270:intron | 25.0% |
| !!! | TTGTGTTTTTTGTTACTTTG+GGG | + | chr4.2:20307438-20307457 | None:intergenic | 25.0% |
| AAACAAATGCTTTGTGTAGA+TGG | - | chr4.2:20307659-20307678 | MS.gene90270:intron | 30.0% | |
| ACGGACATACATTATAAGAA+AGG | - | chr4.2:20307310-20307329 | MS.gene90270:intron | 30.0% | |
| ATAAGTGCAAAAGAAAACGA+GGG | - | chr4.2:20305859-20305878 | MS.gene90270:intron | 30.0% | |
| CAATCAAGTTAATACCTATG+TGG | + | chr4.2:20306423-20306442 | None:intergenic | 30.0% | |
| CTATGTATGTATACTTCTTC+AGG | - | chr4.2:20306845-20306864 | MS.gene90270:intron | 30.0% | |
| GAATTTACAAAGGACTTGAA+TGG | - | chr4.2:20305267-20305286 | MS.gene90270:CDS | 30.0% | |
| GCCTCTTTACAAAGAAATAT+TGG | + | chr4.2:20306019-20306038 | None:intergenic | 30.0% | |
| GTAGTAATTAGTTATACCTG+TGG | + | chr4.2:20306139-20306158 | None:intergenic | 30.0% | |
| GTAGTGTACAAGAAAAAAGA+AGG | + | chr4.2:20306796-20306815 | None:intergenic | 30.0% | |
| TATAAGTGCAAAAGAAAACG+AGG | - | chr4.2:20305858-20305877 | MS.gene90270:intron | 30.0% | |
| TATACCTGTGGAAAACATAT+TGG | + | chr4.2:20306127-20306146 | None:intergenic | 30.0% | |
| TATGCGAATGAGAAACTAAA+TGG | + | chr4.2:20306677-20306696 | None:intergenic | 30.0% | |
| TCATAATAGTTTGGAAACTG+TGG | - | chr4.2:20306255-20306274 | MS.gene90270:intron | 30.0% | |
| TCTATATTTCCATATCCTGT+CGG | + | chr4.2:20305989-20306008 | None:intergenic | 30.0% | |
| TGAATTAATATCCAACTCTG+TGG | + | chr4.2:20305957-20305976 | None:intergenic | 30.0% | |
| TGTACAAGAAAAAAGAAGGT+TGG | + | chr4.2:20306792-20306811 | None:intergenic | 30.0% | |
| TGTTATGAAATACATATCCG+CGG | + | chr4.2:20305722-20305741 | None:intergenic | 30.0% | |
| TTGATTGTAGACACTTTCAA+AGG | - | chr4.2:20306075-20306094 | MS.gene90270:intron | 30.0% | |
| ! | AATTCCAATATGTTTTCCAC+AGG | - | chr4.2:20306120-20306139 | MS.gene90270:intron | 30.0% |
| ! | ATCAAAAATGAGTTTTTCCG+CGG | - | chr4.2:20305702-20305721 | MS.gene90270:CDS | 30.0% |
| ! | GATTTTCCATTGGAATCATT+TGG | + | chr4.2:20306351-20306370 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTACTTTGG+GGG | + | chr4.2:20307437-20307456 | None:intergenic | 30.0% |
| AACCTCTTTATTCATAGGCT+AGG | + | chr4.2:20307203-20307222 | None:intergenic | 35.0% | |
| ACTACAAATTTCCGCAGAAA+TGG | - | chr4.2:20305784-20305803 | MS.gene90270:intron | 35.0% | |
| AGCAGCAACTGAATTTACAA+AGG | - | chr4.2:20305257-20305276 | MS.gene90270:CDS | 35.0% | |
| ATTAATATCCAACTCTGTGG+TGG | + | chr4.2:20305954-20305973 | None:intergenic | 35.0% | |
| ATTCACTCCGTCTATTAACA+TGG | - | chr4.2:20306470-20306489 | MS.gene90270:intron | 35.0% | |
| CAAATAGCATACCAACATCA+GGG | + | chr4.2:20307343-20307362 | None:intergenic | 35.0% | |
| CAGAAACCAACAAGTATGTA+TGG | + | chr4.2:20306700-20306719 | None:intergenic | 35.0% | |
| CTTCAGATAATTTGAGTAGC+AGG | + | chr4.2:20306383-20306402 | None:intergenic | 35.0% | |
| GAATGAGAAACTAAATGGCT+TGG | + | chr4.2:20306672-20306691 | None:intergenic | 35.0% | |
| GTACACTACAAATTGACTGT+TGG | - | chr4.2:20306807-20306826 | MS.gene90270:intron | 35.0% | |
| TACCTCGGATTCAAATGTTA+TGG | + | chr4.2:20307078-20307097 | None:intergenic | 35.0% | |
| TATAGTGAGATAAGGGTTGA+AGG | - | chr4.2:20306987-20307006 | MS.gene90270:intron | 35.0% | |
| TGCAATTAGGTAAGCTTACA+TGG | - | chr4.2:20305509-20305528 | MS.gene90270:intron | 35.0% | |
| TTCTAGATCATGAGAGGAAA+CGG | - | chr4.2:20307291-20307310 | MS.gene90270:intron | 35.0% | |
| TTGGTTTCTGACATAAGGTA+TGG | - | chr4.2:20306710-20306729 | MS.gene90270:CDS | 35.0% | |
| TTTCCATTGGAATCATTTGG+AGG | + | chr4.2:20306348-20306367 | None:intergenic | 35.0% | |
| ! | ATTTCCTTGATATTGGTGAC+AGG | - | chr4.2:20307549-20307568 | MS.gene90270:intron | 35.0% |
| ! | GAATCGATCAAGTTGTACTT+CGG | - | chr4.2:20305289-20305308 | MS.gene90270:CDS | 35.0% |
| ! | GGTATGGATTTGTTTACTGT+CGG | - | chr4.2:20305637-20305656 | MS.gene90270:intron | 35.0% |
| ! | TAGACATGTGAAAGTGTGAA+TGG | - | chr4.2:20305921-20305940 | MS.gene90270:intron | 35.0% |
| ! | TCTAGAACTGCGATTATGTT+TGG | + | chr4.2:20307278-20307297 | None:intergenic | 35.0% |
| !! | ACTTGTTGGTTTCTGACATA+AGG | - | chr4.2:20306705-20306724 | MS.gene90270:CDS | 35.0% |
| !! | TTCTGTAACTCGTGCTTTTT+GGG | + | chr4.2:20307045-20307064 | None:intergenic | 35.0% |
| AAAGAAAACGAGGGAAGAGA+AGG | - | chr4.2:20305868-20305887 | MS.gene90270:intron | 40.0% | |
| AAAGCACGAGTTACAGAACA+AGG | - | chr4.2:20307047-20307066 | MS.gene90270:intron | 40.0% | |
| AACTCAAAACTGGTGCAATG+GGG | + | chr4.2:20306581-20306600 | None:intergenic | 40.0% | |
| AGAACCCACAAGATTTACCT+CGG | + | chr4.2:20307093-20307112 | None:intergenic | 40.0% | |
| ATTCCTCACTCGTGATATCA+GGG | + | chr4.2:20306642-20306661 | None:intergenic | 40.0% | |
| CAGAAATGGAATGAGTTCAG+TGG | - | chr4.2:20305798-20305817 | MS.gene90270:intron | 40.0% | |
| CGCATACCATACATACTTGT+TGG | - | chr4.2:20306691-20306710 | MS.gene90270:CDS | 40.0% | |
| CGGTCACTACAAAAACTTGA+TGG | + | chr4.2:20307758-20307777 | None:intergenic | 40.0% | |
| CTGAACTCATTCCATTTCTG+CGG | + | chr4.2:20305798-20305817 | None:intergenic | 40.0% | |
| GAACTCAAAACTGGTGCAAT+GGG | + | chr4.2:20306582-20306601 | None:intergenic | 40.0% | |
| GAATCCGAGGTAAATCTTGT+GGG | - | chr4.2:20307086-20307105 | MS.gene90270:intron | 40.0% | |
| GCAAATAGCATACCAACATC+AGG | + | chr4.2:20307344-20307363 | None:intergenic | 40.0% | |
| GTCCTAGCCTATGAATAAAG+AGG | - | chr4.2:20307198-20307217 | MS.gene90270:intron | 40.0% | |
| TATTCCTCACTCGTGATATC+AGG | + | chr4.2:20306643-20306662 | None:intergenic | 40.0% | |
| TCAGCTTCAAACAACCAAAG+TGG | + | chr4.2:20306538-20306557 | None:intergenic | 40.0% | |
| TCTTGAGACACTTGATTACC+TGG | - | chr4.2:20307010-20307029 | MS.gene90270:intron | 40.0% | |
| TGAATCCGAGGTAAATCTTG+TGG | - | chr4.2:20307085-20307104 | MS.gene90270:intron | 40.0% | |
| TGCCATAACATTTGAATCCG+AGG | - | chr4.2:20307073-20307092 | MS.gene90270:intron | 40.0% | |
| TTGCCTCCAAATGATTCCAA+TGG | - | chr4.2:20306342-20306361 | MS.gene90270:CDS | 40.0% | |
| TTGGAATCATTTGGAGGCAA+AGG | + | chr4.2:20306342-20306361 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTAGTGACCGACT+AGG | - | chr4.2:20307761-20307780 | MS.gene90270:CDS | 40.0% |
| ! | ATTCCTCCTCGTATTGCTTT+TGG | + | chr4.2:20306103-20306122 | None:intergenic | 40.0% |
| ! | GTCGACAAAGGATTTTCCAT+TGG | + | chr4.2:20306361-20306380 | None:intergenic | 40.0% |
| ! | GTTCTGTAACTCGTGCTTTT+TGG | + | chr4.2:20307046-20307065 | None:intergenic | 40.0% |
| !! | GTTCTTCTTTTCTGCCACTT+TGG | - | chr4.2:20306521-20306540 | MS.gene90270:intron | 40.0% |
| !! | TAACTCGTGCTTTTTGGGAA+AGG | + | chr4.2:20307040-20307059 | None:intergenic | 40.0% |
| AAACCTGTGAACTTGAAGCC+TGG | - | chr4.2:20307695-20307714 | MS.gene90270:CDS | 45.0% | |
| AATTCAGCGAAAACTCCGAC+AGG | - | chr4.2:20305971-20305990 | MS.gene90270:CDS | 45.0% | |
| ACTGCTATTCACAAGCTGCA+AGG | - | chr4.2:20305571-20305590 | MS.gene90270:intron | 45.0% | |
| ACTTCATGGCGTAATGAGCA+GGG | - | chr4.2:20305542-20305561 | MS.gene90270:intron | 45.0% | |
| ATAAACACGATCCACCTGCT+CGG | + | chr4.2:20307246-20307265 | None:intergenic | 45.0% | |
| CCAAAACTATCAGGGTGAGA+AGG | + | chr4.2:20306918-20306937 | None:intergenic | 45.0% | |
| CTGAAGAAGATGTGAAGTGC+TGG | - | chr4.2:20306397-20306416 | MS.gene90270:CDS | 45.0% | |
| GAAGAAATCGAAGTCGATGG+TGG | - | chr4.2:20307616-20307635 | MS.gene90270:intron | 45.0% | |
| GAATCATTTGGAGGCAAAGG+AGG | + | chr4.2:20306339-20306358 | None:intergenic | 45.0% | |
| GACTTCGATTTCTTCTCCCA+TGG | + | chr4.2:20307611-20307630 | None:intergenic | 45.0% | |
| GGAACTCAAAACTGGTGCAA+TGG | + | chr4.2:20306583-20306602 | None:intergenic | 45.0% | |
| GGAGAAGAAATCGAAGTCGA+TGG | - | chr4.2:20307613-20307632 | MS.gene90270:intron | 45.0% | |
| TAACCCTGATATCACGAGTG+AGG | - | chr4.2:20306636-20306655 | MS.gene90270:CDS | 45.0% | |
| TCACTCGTGATATCAGGGTT+AGG | + | chr4.2:20306637-20306656 | None:intergenic | 45.0% | |
| TCAGCCTGTCACCAATATCA+AGG | + | chr4.2:20307556-20307575 | None:intergenic | 45.0% | |
| TTTGAGTAGCAGGTCGACAA+AGG | + | chr4.2:20306373-20306392 | None:intergenic | 45.0% | |
| ! | CCTTCTCACCCTGATAGTTT+TGG | - | chr4.2:20306915-20306934 | MS.gene90270:CDS | 45.0% |
| !! | CTTTTTGGGAAAGGTTGTCC+AGG | + | chr4.2:20307031-20307050 | None:intergenic | 45.0% |
| !! | GTTTACTGTCGGTGCTAATC+AGG | - | chr4.2:20305648-20305667 | MS.gene90270:intron | 45.0% |
| !! | TCGCAGTTCTAGATCATGAG+AGG | - | chr4.2:20307285-20307304 | MS.gene90270:intron | 45.0% |
| AAGGAAGGTCTCCCTGATGT+TGG | - | chr4.2:20307329-20307348 | MS.gene90270:intron | 50.0% | |
| CACTTCATGGCGTAATGAGC+AGG | - | chr4.2:20305541-20305560 | MS.gene90270:intron | 50.0% | |
| CACTTCTGTCGAGACCTAGT+CGG | + | chr4.2:20307778-20307797 | None:intergenic | 50.0% | |
| CGAGTGTCTCTTACGACAGA+TGG | - | chr4.2:20306608-20306627 | MS.gene90270:CDS | 50.0% | |
| CGTGACATCAAAGCCGAACA+AGG | - | chr4.2:20307468-20307487 | MS.gene90270:CDS | 50.0% | |
| CTGTCGTAAGAGACACTCGA+AGG | + | chr4.2:20306607-20306626 | None:intergenic | 50.0% | |
| CTTCATGGCGTAATGAGCAG+GGG | - | chr4.2:20305543-20305562 | MS.gene90270:intron | 50.0% | |
| CTTCTCCCATGGATTCCACA+CGG | + | chr4.2:20307600-20307619 | None:intergenic | 50.0% | |
| GCATTCAACCACCACAGAGT+TGG | - | chr4.2:20305943-20305962 | MS.gene90270:CDS | 50.0% | |
| GCGAAAACTCCGACAGGATA+TGG | - | chr4.2:20305977-20305996 | MS.gene90270:CDS | 50.0% | |
| GTTTGGAAACTGTGGATCGC+TGG | - | chr4.2:20306263-20306282 | MS.gene90270:intron | 50.0% | |
| TCATTTGGAGGCAAAGGAGG+AGG | + | chr4.2:20306336-20306355 | None:intergenic | 50.0% | |
| TCGAAGGCGGAACTCAAAAC+TGG | + | chr4.2:20306591-20306610 | None:intergenic | 50.0% | |
| TCGTAAGAGACACTCGAAGG+CGG | + | chr4.2:20306604-20306623 | None:intergenic | 50.0% | |
| TGTGAACTTGAAGCCTGGAG+AGG | - | chr4.2:20307700-20307719 | MS.gene90270:CDS | 50.0% | |
| TGTTTCTTTGTGCAGCCGTG+TGG | - | chr4.2:20307582-20307601 | MS.gene90270:intron | 50.0% | |
| TTCATGGCGTAATGAGCAGG+GGG | - | chr4.2:20305544-20305563 | MS.gene90270:intron | 50.0% | |
| ! | AAGGCGCCAAAAGCAATACG+AGG | - | chr4.2:20306094-20306113 | MS.gene90270:intron | 50.0% |
| ! | TCTCCAGGCTTCAAGTTCAC+AGG | + | chr4.2:20307701-20307720 | None:intergenic | 50.0% |
| !! | ATGTGAAGTGCTGGCCACAT+AGG | - | chr4.2:20306406-20306425 | MS.gene90270:CDS | 50.0% |
| !! | TCGAAGTCGATGGTGGACTT+TGG | - | chr4.2:20307623-20307642 | MS.gene90270:intron | 50.0% |
| ACTTGAAGCCTGGAGAGGAG+TGG | - | chr4.2:20307705-20307724 | MS.gene90270:CDS | 55.0% | |
| ATGGAGCGCAGGTCACTTCA+TGG | - | chr4.2:20305528-20305547 | MS.gene90270:intron | 55.0% | |
| CGACTAGGTCTCGACAGAAG+TGG | - | chr4.2:20307776-20307795 | MS.gene90270:CDS | 55.0% | |
| GATCCACCTGCTCGGAAGAA+AGG | + | chr4.2:20307238-20307257 | None:intergenic | 55.0% | |
| GATCCTTTCTTCCGAGCAGG+TGG | - | chr4.2:20307232-20307251 | MS.gene90270:intron | 55.0% | |
| GCGCCAAAAGCAATACGAGG+AGG | - | chr4.2:20306097-20306116 | MS.gene90270:intron | 55.0% | |
| GGTAAGCTTACATGGAGCGC+AGG | - | chr4.2:20305517-20305536 | MS.gene90270:intron | 55.0% | |
| GTCGATCCTTTCTTCCGAGC+AGG | - | chr4.2:20307229-20307248 | MS.gene90270:intron | 55.0% | |
| GTTGTACTTCGGACCCCACA+AGG | - | chr4.2:20305300-20305319 | MS.gene90270:CDS | 55.0% | |
| TGCAGCCGTGTGGAATCCAT+GGG | - | chr4.2:20307592-20307611 | MS.gene90270:intron | 55.0% | |
| AAGCCTGGAGAGGAGTGGAC+AGG | - | chr4.2:20307710-20307729 | MS.gene90270:CDS | 60.0% | |
| AGCCTGGAGAGGAGTGGACA+GGG | - | chr4.2:20307711-20307730 | MS.gene90270:CDS | 60.0% | |
| GTGCAGCCGTGTGGAATCCA+TGG | - | chr4.2:20307591-20307610 | MS.gene90270:intron | 60.0% | |
| TGTGGATCGCTGGAGCTGCA+TGG | - | chr4.2:20306273-20306292 | MS.gene90270:intron | 60.0% | |
| CTCCCTGTCCACTCCTCTCC+AGG | + | chr4.2:20307716-20307735 | None:intergenic | 65.0% | |
| CTGGAGAGGAGTGGACAGGG+AGG | - | chr4.2:20307714-20307733 | MS.gene90270:CDS | 65.0% | |
| ! | GGGGCATTCGGCAGCTGTGT+GGG | - | chr4.2:20305227-20305246 | MS.gene90270:CDS | 65.0% |
| ! | TCGGACCCCACAAGGCGCTT+CGG | - | chr4.2:20305308-20305327 | MS.gene90270:CDS | 65.0% |
| ! | TGGGGCATTCGGCAGCTGTG+TGG | - | chr4.2:20305226-20305245 | MS.gene90270:CDS | 65.0% |
| ! | ACCCGTGCCGAAGCGCCTTG+TGG | + | chr4.2:20305318-20305337 | None:intergenic | 70.0% |
| ! | CCCACAAGGCGCTTCGGCAC+GGG | - | chr4.2:20305314-20305333 | MS.gene90270:CDS | 70.0% |
| ! | CCCCACAAGGCGCTTCGGCA+CGG | - | chr4.2:20305313-20305332 | MS.gene90270:CDS | 70.0% |
| ! | CCCGTGCCGAAGCGCCTTGT+GGG | + | chr4.2:20305317-20305336 | None:intergenic | 70.0% |
| ! | CCGTGCCGAAGCGCCTTGTG+GGG | + | chr4.2:20305316-20305335 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20305225 | 20307805 | 20305225 | ID=MS.gene90270 |
| chr4.2 | mRNA | 20305225 | 20307805 | 20305225 | ID=MS.gene90270.t1;Parent=MS.gene90270 |
| chr4.2 | exon | 20307695 | 20307805 | 20307695 | ID=MS.gene90270.t1.exon1;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20307695 | 20307805 | 20307695 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20307438 | 20307512 | 20307438 | ID=MS.gene90270.t1.exon2;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20307438 | 20307512 | 20307438 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20306889 | 20306945 | 20306889 | ID=MS.gene90270.t1.exon3;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20306889 | 20306945 | 20306889 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20306603 | 20306766 | 20306603 | ID=MS.gene90270.t1.exon4;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20306603 | 20306766 | 20306603 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20306304 | 20306438 | 20306304 | ID=MS.gene90270.t1.exon5;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20306304 | 20306438 | 20306304 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20305936 | 20306038 | 20305936 | ID=MS.gene90270.t1.exon6;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20305936 | 20306038 | 20305936 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20305680 | 20305779 | 20305680 | ID=MS.gene90270.t1.exon7;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20305680 | 20305779 | 20305680 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| chr4.2 | exon | 20305225 | 20305433 | 20305225 | ID=MS.gene90270.t1.exon8;Parent=MS.gene90270.t1 |
| chr4.2 | CDS | 20305225 | 20305433 | 20305225 | ID=cds.MS.gene90270.t1;Parent=MS.gene90270.t1 |
| Gene Sequence |
| Protein sequence |
