AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84812


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84812.t1 MTR_3g086660 39.832 595 322 11 1 565 1 589 2.41e-106 333
MS.gene84812.t1 MTR_7g017690 37.943 564 316 10 16 570 10 548 6.88e-92 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84812.t1 AT1G68910 45.763 590 285 11 28 613 24 582 6.98e-143 427
MS.gene84812.t1 AT1G68910 45.763 590 285 11 28 613 24 582 6.98e-143 427
MS.gene84812.t1 AT1G68910 47.445 548 263 8 28 573 24 548 2.40e-141 424
MS.gene84812.t1 AT5G11390 40.496 605 309 11 15 574 25 623 1.15e-105 335

Find 84 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGCTGAACTTTCTTAA+AGG 0.224825 6.3:-49777944 MS.gene84812:CDS
GCAGTTACAACAACAGTTAT+TGG 0.246407 6.3:-49778828 MS.gene84812:CDS
CAATGCTACCGAGGTGTTAA+TGG 0.262222 6.3:-49778380 MS.gene84812:CDS
AACAAAGTTTATCATGGATT+TGG 0.269879 6.3:-49777570 MS.gene84812:CDS
ATATGTTATACACAGCAATT+TGG 0.281088 6.3:-49777808 MS.gene84812:CDS
AAGTTTGGTAGGAAAGTTAA+AGG 0.285452 6.3:-49776894 MS.gene84812:CDS
AATTGAAGAGCTAAAATCTA+AGG 0.296015 6.3:-49777771 MS.gene84812:CDS
ATACACAGCAATTTGGGATA+TGG 0.307575 6.3:-49777801 MS.gene84812:CDS
TGTTCTGTATATTTATCTAT+TGG 0.307654 6.3:-49779101 MS.gene84812:CDS
GGGGATTTCGAAAAGTATAA+TGG 0.309555 6.3:-49778359 MS.gene84812:CDS
AAGAAGCAGCAGAAGTTGTT+TGG 0.325223 6.3:-49778423 MS.gene84812:CDS
ATCCATGATAAACTTTGTTC+TGG 0.336896 6.3:+49777574 None:intergenic
TACTGAGGTGTTGGATTTGA+GGG 0.336994 6.3:-49778176 MS.gene84812:CDS
ACACTTCAATAAAACCTTTC+AGG 0.340874 6.3:-49776756 MS.gene84812:CDS
ATTCATATACACAGGGGAAA+TGG 0.346219 6.3:-49778662 MS.gene84812:intron
GCCGATGATCTATTTCTGTT+AGG 0.352447 6.3:+49779158 None:intergenic
AGAAGCAGCAGAAGTTGTTT+GGG 0.356426 6.3:-49778422 MS.gene84812:CDS
AAAACAGGAGAATAAAAGTT+TGG 0.356600 6.3:-49776909 MS.gene84812:CDS
TTCATATACACAGGGGAAAT+GGG 0.379165 6.3:-49778661 MS.gene84812:intron
AATGCTACCGAGGTGTTAAT+GGG 0.379167 6.3:-49778379 MS.gene84812:CDS
CCGATGATCTATTTCTGTTA+GGG 0.380336 6.3:+49779159 None:intergenic
CCAGCTCTTTATGAAGTTCA+AGG 0.382440 6.3:+49777684 None:intergenic
AAGAGCTGAACTTTCTTAAA+GGG 0.392409 6.3:-49777943 MS.gene84812:CDS
TATGTTATACACAGCAATTT+GGG 0.393418 6.3:-49777807 MS.gene84812:CDS
GCTTTGCATGAAAACATCAT+TGG 0.410569 6.3:-49777642 MS.gene84812:CDS
ATGCCTTCGCATTCTGTAGT+TGG 0.418735 6.3:+49777858 None:intergenic
GGGATTTCGAAAAGTATAAT+GGG 0.426529 6.3:-49778358 MS.gene84812:CDS
TACCAGAACAAAGTTTATCA+TGG 0.428221 6.3:-49777576 MS.gene84812:CDS
ATGTAAGTTCACCAGCTTCT+CGG 0.429566 6.3:+49779123 None:intergenic
AAGTTAAAGGAGACTAAAAT+TGG 0.430349 6.3:-49776881 MS.gene84812:CDS
TGAGGTTGAACTCAGTTACT+TGG 0.431369 6.3:+49778329 None:intergenic
AAGGGAGCGCATTAATAAAC+AGG 0.433397 6.3:-49777528 MS.gene84812:intron
GCAAGGATATATCAATATCT+TGG 0.438936 6.3:+49779185 None:intergenic
TAACTGCTTCTTAGACTCTT+CGG 0.444785 6.3:+49778844 None:intergenic
ATGCTGCTTTAGAGAAGAAC+GGG 0.446606 6.3:-49778234 MS.gene84812:CDS
ATACTGAGGTGTTGGATTTG+AGG 0.449553 6.3:-49778177 MS.gene84812:CDS
CACCAGCTTCTCGGAAGAAT+AGG 0.454696 6.3:+49779132 None:intergenic
AACAGAGCTTGACAATTTCA+TGG 0.456939 6.3:-49778966 MS.gene84812:CDS
GCAGCTAGATGCTTTAAAAC+AGG 0.463620 6.3:-49776924 MS.gene84812:intron
ACAAAATCATTTGATGAAGA+AGG 0.480014 6.3:-49776785 MS.gene84812:CDS
TATTTCTGTTAGGGCTTGCA+AGG 0.481548 6.3:+49779168 None:intergenic
AATGATGTTTGATCTATTGT+CGG 0.485514 6.3:-49779008 MS.gene84812:CDS
AGCCTATTCTTCCGAGAAGC+TGG 0.487690 6.3:-49779134 MS.gene84812:CDS
TCAACTTACAATTCTCATGT+TGG 0.490472 6.3:+49778759 None:intergenic
TCAGGAAAATACTGAGGTGT+TGG 0.490567 6.3:-49778185 MS.gene84812:CDS
ATCATTGCTTGAGTCAATGT+TGG 0.490619 6.3:+49776814 None:intergenic
TTCTATAAGATGTTCATGAC+AGG 0.491221 6.3:+49778078 None:intergenic
TTCAATAAAACCTTTCAGGC+AGG 0.495569 6.3:-49776752 MS.gene84812:intron
AAAATTGGTGCATGCAACAA+TGG 0.496724 6.3:-49776866 MS.gene84812:CDS
CAGGAGAATAAAAGTTTGGT+AGG 0.501234 6.3:-49776905 MS.gene84812:CDS
ATCATTTGATGAAGAAGGAA+TGG 0.507901 6.3:-49776780 MS.gene84812:CDS
ATGATGTTTGATCTATTGTC+GGG 0.509245 6.3:-49779007 MS.gene84812:CDS
AAATTGGTGCATGCAACAAT+GGG 0.516712 6.3:-49776865 MS.gene84812:CDS
CTCGCTGCATATAACCGTTG+AGG 0.524764 6.3:+49778311 None:intergenic
TGCTTGAGAAGTCGCTCGCA+AGG 0.526338 6.3:-49778540 MS.gene84812:CDS
GGTGTTGGATTTGAGGGAAA+AGG 0.526687 6.3:-49778170 MS.gene84812:CDS
GCGAAGGCATCTTCTGAAGC+AGG 0.527456 6.3:-49777845 MS.gene84812:CDS
CCTTGAACTTCATAAAGAGC+TGG 0.546083 6.3:-49777684 MS.gene84812:CDS
CTTAGAAAACTCATTTGAGA+AGG 0.549658 6.3:-49779032 MS.gene84812:CDS
AGCTGAGAGTGCTGAAGCAA+AGG 0.555426 6.3:-49778002 MS.gene84812:CDS
TAATGCAACTAGCTACTGAA+AGG 0.557736 6.3:-49777547 MS.gene84812:CDS
TGTTAATGTTGACGATACTC+AGG 0.562953 6.3:-49778203 MS.gene84812:CDS
GAAAACGAAAGATCAGAGAA+TGG 0.579935 6.3:-49778590 MS.gene84812:CDS
CGAAATCCCCATTAACACCT+CGG 0.586371 6.3:+49778372 None:intergenic
CCCTAACAGAAATAGATCAT+CGG 0.587259 6.3:-49779159 MS.gene84812:CDS
ATACACAGGGGAAATGGGGA+AGG 0.589178 6.3:-49778656 MS.gene84812:intron
GCGACTTCATAAAAGTCTTG+TGG 0.597403 6.3:-49778786 MS.gene84812:CDS
ACTCCGCTACACTGAACAAG+TGG 0.600856 6.3:-49778458 MS.gene84812:CDS
GAAGCAGCAGAAGTTGTTTG+GGG 0.601416 6.3:-49778421 MS.gene84812:CDS
ACAGTTAACTGAAACGAACA+TGG 0.602578 6.3:-49777975 MS.gene84812:CDS
TCTAAGGTTTCAAAAGCTGA+AGG 0.603452 6.3:-49777755 MS.gene84812:CDS
AATGCAACTAGCTACTGAAA+GGG 0.605712 6.3:-49777546 MS.gene84812:CDS
TCATATACACAGGGGAAATG+GGG 0.609571 6.3:-49778660 MS.gene84812:intron
GATGCTGCTTTAGAGAAGAA+CGG 0.611153 6.3:-49778235 MS.gene84812:CDS
ATGCCACTTGTTCAGTGTAG+CGG 0.624346 6.3:+49778455 None:intergenic
GTAACTGAGTTCAACCTCAA+CGG 0.629441 6.3:-49778325 MS.gene84812:CDS
GTTCGCTTGAGAAGCAACTG+AGG 0.632474 6.3:-49777892 MS.gene84812:CDS
TTCGCTTGAGAAGCAACTGA+GGG 0.639113 6.3:-49777891 MS.gene84812:CDS
GCTTGAGAAGTCGCTCGCAA+GGG 0.645249 6.3:-49778539 MS.gene84812:CDS
TATCCAACTACAGAATGCGA+AGG 0.657458 6.3:-49777861 MS.gene84812:CDS
ATGCTACCGAGGTGTTAATG+GGG 0.669958 6.3:-49778378 MS.gene84812:CDS
TGAAGCAGACAATGCTACCG+AGG 0.684617 6.3:-49778389 MS.gene84812:CDS
GTCGTGCAGACATTTGACTG+AGG 0.708890 6.3:-49778900 MS.gene84812:CDS
CGATACTCAGGAAAATACTG+AGG 0.718119 6.3:-49778191 MS.gene84812:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTTTTCTTAAAAAATTT+AGG + chr6.3:49778863-49778882 None:intergenic 10.0%
!! TAATAATAGAAATCAAGAAA+GGG + chr6.3:49779241-49779260 None:intergenic 15.0%
!!! ATAAATCTTTTTCATATTGT+CGG + chr6.3:49779041-49779060 None:intergenic 15.0%
!!! TTCTATGTTTTTATCTTTTA+TGG - chr6.3:49777511-49777530 MS.gene84812:intron 15.0%
!!! TTTTCTTTTGAGAATAAAAA+TGG - chr6.3:49778521-49778540 MS.gene84812:CDS 15.0%
!! AAAAAGATTTATAGCATGTT+TGG - chr6.3:49779049-49779068 MS.gene84812:CDS 20.0%
!! AAAATTTAGGCATAATAACT+AGG + chr6.3:49778850-49778869 None:intergenic 20.0%
!! AAGAAAAGAACATAAAAACA+TGG + chr6.3:49778508-49778527 None:intergenic 20.0%
!! AATTGAACTGAAAATATTCA+AGG - chr6.3:49777605-49777624 MS.gene84812:CDS 20.0%
!! ATATCATGTCTAACTTAAAT+TGG + chr6.3:49779104-49779123 None:intergenic 20.0%
!! CATAATATCAACTAGTTAAA+AGG + chr6.3:49778284-49778303 None:intergenic 20.0%
!! CTAATAATAGAAATCAAGAA+AGG + chr6.3:49779242-49779261 None:intergenic 20.0%
!! CTTTCTTGATTTCTATTATT+AGG - chr6.3:49779240-49779259 MS.gene84812:CDS 20.0%
!! TATCATGTCTAACTTAAATT+GGG + chr6.3:49779103-49779122 None:intergenic 20.0%
!! TGTTCTGTATATTTATCTAT+TGG - chr6.3:49775888-49775907 MS.gene84812:intron 20.0%
!!! AAGATACTGTTATTGATTAA+TGG + chr6.3:49777995-49778014 None:intergenic 20.0%
!!! AATTTTAATCGAACAACTTA+AGG - chr6.3:49776726-49776745 MS.gene84812:intron 20.0%
!!! ATTTTCACAGTTTCTTAATA+TGG + chr6.3:49777747-49777766 None:intergenic 20.0%
!!! TGAATATTTTCAGTTCAATT+TGG + chr6.3:49777605-49777624 None:intergenic 20.0%
!!! TTAACTAGTTGATATTATGT+TGG - chr6.3:49778285-49778304 MS.gene84812:CDS 20.0%
! AAAACAGGAGAATAAAAGTT+TGG - chr6.3:49778080-49778099 MS.gene84812:CDS 25.0%
! AACAAAGTTTATCATGGATT+TGG - chr6.3:49777419-49777438 MS.gene84812:intron 25.0%
! AAGTTAAAGGAGACTAAAAT+TGG - chr6.3:49778108-49778127 MS.gene84812:CDS 25.0%
! AATGATGTTTGATCTATTGT+CGG - chr6.3:49775981-49776000 MS.gene84812:intron 25.0%
! AATTGAAGAGCTAAAATCTA+AGG - chr6.3:49777218-49777237 MS.gene84812:intron 25.0%
! ACAAAATCATTTGATGAAGA+AGG - chr6.3:49778204-49778223 MS.gene84812:CDS 25.0%
! ATATGTTATACACAGCAATT+TGG - chr6.3:49777181-49777200 MS.gene84812:intron 25.0%
! ATCAACTAGTTAAAAGGAAT+AGG + chr6.3:49778278-49778297 None:intergenic 25.0%
! ATCATGTCTAACTTAAATTG+GGG + chr6.3:49779102-49779121 None:intergenic 25.0%
! ATTGTTCAATCATGGAAAAT+TGG - chr6.3:49778801-49778820 MS.gene84812:CDS 25.0%
! CTTGATTTCTATTATTAGGT+GGG - chr6.3:49779244-49779263 MS.gene84812:CDS 25.0%
! TAAGAATTCTTGGAAAAGAT+GGG + chr6.3:49778894-49778913 None:intergenic 25.0%
! TATGTTATACACAGCAATTT+GGG - chr6.3:49777182-49777201 MS.gene84812:intron 25.0%
! TCTTGATTTCTATTATTAGG+TGG - chr6.3:49779243-49779262 MS.gene84812:CDS 25.0%
! TGTTTATGTGTAAGAATTCT+TGG + chr6.3:49778904-49778923 None:intergenic 25.0%
! TTGCATGAAATGATCATTAA+AGG + chr6.3:49777551-49777570 None:intergenic 25.0%
! TTTAGTCATTCATATACACA+GGG - chr6.3:49776320-49776339 MS.gene84812:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr6.3:49778413-49778432 MS.gene84812:CDS 25.0%
!! GACATGATATTTATAGCTTT+TGG - chr6.3:49779114-49779133 MS.gene84812:CDS 25.0%
!! TCTTTTATGGAATCTCAATT+TGG - chr6.3:49777524-49777543 MS.gene84812:intron 25.0%
!! TTTTAGTCATTCATATACAC+AGG - chr6.3:49776319-49776338 MS.gene84812:intron 25.0%
!!! AATGCTTTCTTTTAGAGATT+CGG + chr6.3:49776950-49776969 None:intergenic 25.0%
AACATAGAACTTATTTGACG+AGG + chr6.3:49777500-49777519 None:intergenic 30.0%
AAGAGCTGAACTTTCTTAAA+GGG - chr6.3:49777046-49777065 MS.gene84812:intron 30.0%
AAGTTTGGTAGGAAAGTTAA+AGG - chr6.3:49778095-49778114 MS.gene84812:CDS 30.0%
AATACACGTATTTATTCGAG+AGG + chr6.3:49777968-49777987 None:intergenic 30.0%
ACAACAAGGAAAAATAAGCA+TGG + chr6.3:49777918-49777937 None:intergenic 30.0%
ACACTTCAATAAAACCTTTC+AGG - chr6.3:49778233-49778252 MS.gene84812:CDS 30.0%
ATCATTTGATGAAGAAGGAA+TGG - chr6.3:49778209-49778228 MS.gene84812:CDS 30.0%
ATCCATGATAAACTTTGTTC+TGG + chr6.3:49777418-49777437 None:intergenic 30.0%
ATGATGTTTGATCTATTGTC+GGG - chr6.3:49775982-49776001 MS.gene84812:intron 30.0%
CAAAGCATATCCTAATCAAT+GGG + chr6.3:49778573-49778592 None:intergenic 30.0%
CTTAGAAAACTCATTTGAGA+AGG - chr6.3:49775957-49775976 MS.gene84812:intron 30.0%
GAAAAATAAGCATGGAGATA+AGG + chr6.3:49777910-49777929 None:intergenic 30.0%
GCAAGGATATATCAATATCT+TGG + chr6.3:49775807-49775826 None:intergenic 30.0%
GTAAGAATTCTTGGAAAAGA+TGG + chr6.3:49778895-49778914 None:intergenic 30.0%
TACCAGAACAAAGTTTATCA+TGG - chr6.3:49777413-49777432 MS.gene84812:intron 30.0%
TATGTTAGAATATGCAACCA+AGG + chr6.3:49778717-49778736 None:intergenic 30.0%
TCAACTTACAATTCTCATGT+TGG + chr6.3:49776233-49776252 None:intergenic 30.0%
TGTAGTACATTCTAGATTGA+TGG + chr6.3:49777835-49777854 None:intergenic 30.0%
TTAGTCATTCATATACACAG+GGG - chr6.3:49776321-49776340 MS.gene84812:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr6.3:49778382-49778401 None:intergenic 30.0%
TTCTATAAGATGTTCATGAC+AGG + chr6.3:49776914-49776933 None:intergenic 30.0%
TTGGTTGCATATTCTAACAT+AGG - chr6.3:49778716-49778735 MS.gene84812:intron 30.0%
TTTAGGCATAATAACTAGGT+TGG + chr6.3:49778846-49778865 None:intergenic 30.0%
! AGAAGAACGAAAGAATTTTG+AGG - chr6.3:49776855-49776874 MS.gene84812:CDS 30.0%
! AGATAACTATCCCATTGATT+AGG - chr6.3:49778560-49778579 MS.gene84812:CDS 30.0%
! CTAGTTGATATTATGTTGGT+AGG - chr6.3:49778289-49778308 MS.gene84812:CDS 30.0%
! GACTGAGGTTTTCTTTATTA+TGG - chr6.3:49776104-49776123 MS.gene84812:intron 30.0%
! GGGATTTCGAAAAGTATAAT+GGG - chr6.3:49776631-49776650 MS.gene84812:intron 30.0%
! TGAACAAGTGGCATTTTATA+TGG - chr6.3:49776543-49776562 MS.gene84812:intron 30.0%
! TTTTCAGTTCAATTTGGACT+TGG + chr6.3:49777599-49777618 None:intergenic 30.0%
!! ACTTGATAATTTTGTACTGC+TGG + chr6.3:49777379-49777398 None:intergenic 30.0%
!! TGTTTACAAAAGCACTGAAT+CGG + chr6.3:49778686-49778705 None:intergenic 30.0%
!!! TTGTCATTTTATCAGAGAGA+AGG + chr6.3:49778766-49778785 None:intergenic 30.0%
!!! TTTCCTTGTTGTTTTACTCT+TGG - chr6.3:49777926-49777945 MS.gene84812:CDS 30.0%
AAAAAAGATACCTGCCTGAA+AGG + chr6.3:49778250-49778269 None:intergenic 35.0%
AAAAGTGAAGTTAAGCGCTA+TGG + chr6.3:49778942-49778961 None:intergenic 35.0%
AAAATTGGTGCATGCAACAA+TGG - chr6.3:49778123-49778142 MS.gene84812:CDS 35.0%
AAAGACCATAATATCCCAGT+TGG - chr6.3:49778609-49778628 MS.gene84812:CDS 35.0%
AAATTGGTGCATGCAACAAT+GGG - chr6.3:49778124-49778143 MS.gene84812:CDS 35.0%
AACAGAGCTTGACAATTTCA+TGG - chr6.3:49776023-49776042 MS.gene84812:intron 35.0%
AACATTGATGTAACTCTCTC+AGG - chr6.3:49777702-49777721 MS.gene84812:CDS 35.0%
AACTGGGATATTATGGTCTT+TGG + chr6.3:49778610-49778629 None:intergenic 35.0%
AATGCAACTAGCTACTGAAA+GGG - chr6.3:49777443-49777462 MS.gene84812:intron 35.0%
ACAGTTAACTGAAACGAACA+TGG - chr6.3:49777014-49777033 MS.gene84812:intron 35.0%
ACTCCAAGAGTAAAACAACA+AGG + chr6.3:49777932-49777951 None:intergenic 35.0%
AGAAAAACTCTACTCACTCA+AGG - chr6.3:49775756-49775775 MS.gene84812:intron 35.0%
ATCATTGCTTGAGTCAATGT+TGG + chr6.3:49778178-49778197 None:intergenic 35.0%
ATTATTATGCATGCTCCAAC+TGG + chr6.3:49778627-49778646 None:intergenic 35.0%
ATTCATATACACAGGGGAAA+TGG - chr6.3:49776327-49776346 MS.gene84812:intron 35.0%
CAGGAGAATAAAAGTTTGGT+AGG - chr6.3:49778084-49778103 MS.gene84812:CDS 35.0%
CCCTAACAGAAATAGATCAT+CGG - chr6.3:49775830-49775849 MS.gene84812:intron 35.0%
GAAAAACTCTACTCACTCAA+GGG - chr6.3:49775757-49775776 MS.gene84812:intron 35.0%
GAAAACGAAAGATCAGAGAA+TGG - chr6.3:49776399-49776418 MS.gene84812:intron 35.0%
GAAGAGCTGAACTTTCTTAA+AGG - chr6.3:49777045-49777064 MS.gene84812:intron 35.0%
GAGAGAGTTACATCAATGTT+AGG + chr6.3:49777702-49777721 None:intergenic 35.0%
GCAAAGCATATCCTAATCAA+TGG + chr6.3:49778574-49778593 None:intergenic 35.0%
GCAGTTACAACAACAGTTAT+TGG - chr6.3:49776161-49776180 MS.gene84812:intron 35.0%
GCTTTGCATGAAAACATCAT+TGG - chr6.3:49777347-49777366 MS.gene84812:intron 35.0%
TAACTGCTTCTTAGACTCTT+CGG + chr6.3:49776148-49776167 None:intergenic 35.0%
TAATGCAACTAGCTACTGAA+AGG - chr6.3:49777442-49777461 MS.gene84812:intron 35.0%
TAGAATATGCAACCAAGGAA+TGG + chr6.3:49778712-49778731 None:intergenic 35.0%
TGTTAATGTTGACGATACTC+AGG - chr6.3:49776786-49776805 MS.gene84812:CDS 35.0%
TTATTATGCATGCTCCAACT+GGG + chr6.3:49778626-49778645 None:intergenic 35.0%
TTCAATAAAACCTTTCAGGC+AGG - chr6.3:49778237-49778256 MS.gene84812:CDS 35.0%
TTCATATACACAGGGGAAAT+GGG - chr6.3:49776328-49776347 MS.gene84812:intron 35.0%
TTCTTGGAAAAGATGGGATT+TGG + chr6.3:49778888-49778907 None:intergenic 35.0%
TTGTAAACAAGTCCATTCCT+TGG - chr6.3:49778697-49778716 MS.gene84812:intron 35.0%
! AAATGAGTTTTCTAAGTCGC+AGG + chr6.3:49775953-49775972 None:intergenic 35.0%
! AACTGGTTCAGAATAAGCAA+AGG + chr6.3:49778028-49778047 None:intergenic 35.0%
! ACTCATTAGAGCATCTTCAA+TGG - chr6.3:49777665-49777684 MS.gene84812:CDS 35.0%
! ATACACAGCAATTTGGGATA+TGG - chr6.3:49777188-49777207 MS.gene84812:intron 35.0%
! CTCATTAGAGCATCTTCAAT+GGG - chr6.3:49777666-49777685 MS.gene84812:CDS 35.0%
! GGACTTGGTATACAAAGTTA+AGG + chr6.3:49777584-49777603 None:intergenic 35.0%
! GGGGATTTCGAAAAGTATAA+TGG - chr6.3:49776630-49776649 MS.gene84812:intron 35.0%
! GTCGGGCATTTTAAATTTTG+AGG - chr6.3:49775999-49776018 MS.gene84812:intron 35.0%
! TCTAAGGTTTCAAAAGCTGA+AGG - chr6.3:49777234-49777253 MS.gene84812:intron 35.0%
! TTTTGCGATAGTCTAAGCTA+AGG + chr6.3:49779189-49779208 None:intergenic 35.0%
!! CCGATGATCTATTTCTGTTA+GGG + chr6.3:49775833-49775852 None:intergenic 35.0%
!! GTTTACAAAAGCACTGAATC+GGG + chr6.3:49778685-49778704 None:intergenic 35.0%
!! TTCACTTTTGCACTGGATTT+TGG - chr6.3:49778953-49778972 MS.gene84812:CDS 35.0%
!!! TGTTGTTTTACTCTTGGAGT+TGG - chr6.3:49777932-49777951 MS.gene84812:CDS 35.0%
AAAGTGTAGACCAAAACACG+TGG + chr6.3:49778981-49779000 None:intergenic 40.0%
AAGAAGCAGCAGAAGTTGTT+TGG - chr6.3:49776566-49776585 MS.gene84812:intron 40.0%
AATTGTGCAGTGAATTCTCG+TGG + chr6.3:49779144-49779163 None:intergenic 40.0%
AGAAGCAGCAGAAGTTGTTT+GGG - chr6.3:49776567-49776586 MS.gene84812:intron 40.0%
AGCATGTTTGGATCAGCTTT+GGG - chr6.3:49779061-49779080 MS.gene84812:CDS 40.0%
AGTACTGCCGAGAAAAAAGT+CGG - chr6.3:49777075-49777094 MS.gene84812:intron 40.0%
ATGCTCCAACTGGGATATTA+TGG + chr6.3:49778617-49778636 None:intergenic 40.0%
ATGTAAGTTCACCAGCTTCT+CGG + chr6.3:49775869-49775888 None:intergenic 40.0%
ATTGATGTAACTCTCTCAGG+AGG - chr6.3:49777705-49777724 MS.gene84812:CDS 40.0%
CAACGTGCATTGTTCAATCA+TGG - chr6.3:49778793-49778812 MS.gene84812:CDS 40.0%
CCAGCTCTTTATGAAGTTCA+AGG + chr6.3:49777308-49777327 None:intergenic 40.0%
CCTTGAACTTCATAAAGAGC+TGG - chr6.3:49777305-49777324 MS.gene84812:intron 40.0%
CGATACTCAGGAAAATACTG+AGG - chr6.3:49776798-49776817 MS.gene84812:CDS 40.0%
CGATAGTCTAAGCTAAGGTT+TGG + chr6.3:49779184-49779203 None:intergenic 40.0%
GCGACTTCATAAAAGTCTTG+TGG - chr6.3:49776203-49776222 MS.gene84812:intron 40.0%
GTAACTGAGTTCAACCTCAA+CGG - chr6.3:49776664-49776683 MS.gene84812:intron 40.0%
GTTGATTGTCCTGTATGAAG+AGG + chr6.3:49778480-49778499 None:intergenic 40.0%
TAGCATGTTTGGATCAGCTT+TGG - chr6.3:49779060-49779079 MS.gene84812:CDS 40.0%
TATCCAACTACAGAATGCGA+AGG - chr6.3:49777128-49777147 MS.gene84812:intron 40.0%
TCAGGAAAATACTGAGGTGT+TGG - chr6.3:49776804-49776823 MS.gene84812:CDS 40.0%
TCATATACACAGGGGAAATG+GGG - chr6.3:49776329-49776348 MS.gene84812:intron 40.0%
TGAGGTTGAACTCAGTTACT+TGG + chr6.3:49776663-49776682 None:intergenic 40.0%
TGTCCTGTATGAAGAGGATA+CGG + chr6.3:49778474-49778493 None:intergenic 40.0%
TTGATGTAACTCTCTCAGGA+GGG - chr6.3:49777706-49777725 MS.gene84812:CDS 40.0%
TTTACAGCTGCTATGAAGCA+CGG - chr6.3:49778317-49778336 MS.gene84812:CDS 40.0%
! AAGGGAGCGCATTAATAAAC+AGG - chr6.3:49777461-49777480 MS.gene84812:intron 40.0%
! AATGCTACCGAGGTGTTAAT+GGG - chr6.3:49776610-49776629 MS.gene84812:intron 40.0%
! TATTTCTGTTAGGGCTTGCA+AGG + chr6.3:49775824-49775843 None:intergenic 40.0%
!! ATACTGAGGTGTTGGATTTG+AGG - chr6.3:49776812-49776831 MS.gene84812:CDS 40.0%
!! ATGCTGCTTTAGAGAAGAAC+GGG - chr6.3:49776755-49776774 MS.gene84812:CDS 40.0%
!! GATGCTGCTTTAGAGAAGAA+CGG - chr6.3:49776754-49776773 MS.gene84812:CDS 40.0%
!! GCAGCTAGATGCTTTAAAAC+AGG - chr6.3:49778065-49778084 MS.gene84812:CDS 40.0%
!! GCCGATGATCTATTTCTGTT+AGG + chr6.3:49775834-49775853 None:intergenic 40.0%
!! GCTTAACTTCACTTTTGCAC+TGG - chr6.3:49778946-49778965 MS.gene84812:CDS 40.0%
!! TACTGAGGTGTTGGATTTGA+GGG - chr6.3:49776813-49776832 MS.gene84812:CDS 40.0%
!!! AAGCGAACCGACTTTTTTCT+CGG + chr6.3:49777085-49777104 None:intergenic 40.0%
!!! GTTTTAAAGCATCTAGCTGC+AGG + chr6.3:49778065-49778084 None:intergenic 40.0%
AGGAAGAACGTAGTGGTAAC+TGG + chr6.3:49778045-49778064 None:intergenic 45.0%
ATGCCTTCGCATTCTGTAGT+TGG + chr6.3:49777134-49777153 None:intergenic 45.0%
CGAAATCCCCATTAACACCT+CGG + chr6.3:49776620-49776639 None:intergenic 45.0%
GAAGCAGCAGAAGTTGTTTG+GGG - chr6.3:49776568-49776587 MS.gene84812:intron 45.0%
TATGAAGAGGATACGGACAC+CGG + chr6.3:49778467-49778486 None:intergenic 45.0%
TATGAAGCACGGACACTTCT+GGG - chr6.3:49778328-49778347 MS.gene84812:CDS 45.0%
TGATGTAACTCTCTCAGGAG+GGG - chr6.3:49777707-49777726 MS.gene84812:CDS 45.0%
TGTCCGTATCCTCTTCATAC+AGG - chr6.3:49778468-49778487 MS.gene84812:CDS 45.0%
TTCGCTTGAGAAGCAACTGA+GGG - chr6.3:49777098-49777117 MS.gene84812:intron 45.0%
! ATGCCACTTGTTCAGTGTAG+CGG + chr6.3:49776537-49776556 None:intergenic 45.0%
! ATGCTACCGAGGTGTTAATG+GGG - chr6.3:49776611-49776630 MS.gene84812:intron 45.0%
! CAATGCTACCGAGGTGTTAA+TGG - chr6.3:49776609-49776628 MS.gene84812:intron 45.0%
! GGTGTTGGATTTGAGGGAAA+AGG - chr6.3:49776819-49776838 MS.gene84812:CDS 45.0%
!! GATTTTGGCACCACGTGTTT+TGG - chr6.3:49778968-49778987 MS.gene84812:CDS 45.0%
!! TACAAAAGCACTGAATCGGG+TGG + chr6.3:49778682-49778701 None:intergenic 45.0%
ACTCCGCTACACTGAACAAG+TGG - chr6.3:49776531-49776550 MS.gene84812:intron 50.0%
AGCCTATTCTTCCGAGAAGC+TGG - chr6.3:49775855-49775874 MS.gene84812:intron 50.0%
ATACACAGGGGAAATGGGGA+AGG - chr6.3:49776333-49776352 MS.gene84812:intron 50.0%
CACCAGCTTCTCGGAAGAAT+AGG + chr6.3:49775860-49775879 None:intergenic 50.0%
CTATGAAGCACGGACACTTC+TGG - chr6.3:49778327-49778346 MS.gene84812:CDS 50.0%
CTCGCTGCATATAACCGTTG+AGG + chr6.3:49776681-49776700 None:intergenic 50.0%
GTCGTGCAGACATTTGACTG+AGG - chr6.3:49776089-49776108 MS.gene84812:intron 50.0%
GTTCGCTTGAGAAGCAACTG+AGG - chr6.3:49777097-49777116 MS.gene84812:intron 50.0%
TAGCTGCAGGAAGAACGTAG+TGG + chr6.3:49778052-49778071 None:intergenic 50.0%
TGAAGCAGACAATGCTACCG+AGG - chr6.3:49776600-49776619 MS.gene84812:intron 50.0%
!! AGCTGAGAGTGCTGAAGCAA+AGG - chr6.3:49776987-49777006 MS.gene84812:intron 50.0%
GCTTGAGAAGTCGCTCGCAA+GGG - chr6.3:49776450-49776469 MS.gene84812:intron 55.0%
TGCTTGAGAAGTCGCTCGCA+AGG - chr6.3:49776449-49776468 MS.gene84812:intron 55.0%
! CTTCTGGGTTAGACGTGTCG+CGG - chr6.3:49778343-49778362 MS.gene84812:CDS 55.0%
!! GCGAAGGCATCTTCTGAAGC+AGG - chr6.3:49777144-49777163 MS.gene84812:intron 55.0%
GTCCATGTCCGTGTCGTGTC+CGG - chr6.3:49778445-49778464 MS.gene84812:CDS 60.0%
TACGGACACCGGACACGACA+CGG + chr6.3:49778456-49778475 None:intergenic 60.0%
CACCGGACACGACACGGACA+TGG + chr6.3:49778450-49778469 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 49775742 49779269 49775742 ID=MS.gene84812
chr6.3 mRNA 49775742 49779269 49775742 ID=MS.gene84812.t1;Parent=MS.gene84812
chr6.3 exon 49778768 49779269 49778768 ID=MS.gene84812.t1.exon1;Parent=MS.gene84812.t1
chr6.3 CDS 49778768 49779269 49778768 ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3 exon 49777529 49778670 49777529 ID=MS.gene84812.t1.exon2;Parent=MS.gene84812.t1
chr6.3 CDS 49777529 49778670 49777529 ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3 exon 49776753 49776942 49776753 ID=MS.gene84812.t1.exon3;Parent=MS.gene84812.t1
chr6.3 CDS 49776753 49776942 49776753 ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3 exon 49775742 49775749 49775742 ID=MS.gene84812.t1.exon4;Parent=MS.gene84812.t1
chr6.3 CDS 49775742 49775749 49775742 ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
Gene Sequence

>MS.gene84812

ATGGATGCAGCTTTAGAAAAACTCTACTCACTCAAGGGTTTCTCAACAAAAGAAAACGACATCCAAGATATTGATATATCCTTGCAAGCCCTAACAGAAATAGATCATCGGCTAGCCTATTCTTCCGAGAAGCTGGTGAACTTACATGTTCTGTATATTTATCTATTGGCTCGAGAAAACGATCTTGAAGAAATAGATTCAAAGAATACCTGCGACTTAGAAAACTCATTTGAGAAGGCAATGATGTTTGATCTATTGTCGGGCATTTTAAATTTTGAGGCAACAGAGCTTGACAATTTCATGGACACTCTACACGAAGAAATTGTTGATGCTCGTCATAAAATAATGTCGTGCAGACATTTGACTGAGGTTTTCTTTATTATGGATGAAAAATTGCAAGATTCCGAAGAGTCTAAGAAGCAGTTACAACAACAGTTATTGGAGTTAAAGATTCAGTCATCGCGACTTCATAAAAGTCTTGTGGCTTTCCAACATGAGAATTGTAAGTTGAAATATTACACAGATTTTTCTTTTTGTTCGAAAAATTTCATTGAGTTATTTTTCATTTATTTATCGTTTTTAGTCATTCATATACACAGGGGAAATGGGGAAGGCTTTGAATTTATCAGAAAATAGTCATGTGTCAAATGTGAAAGTGAAAACGAAAGATCAGAGAATGGTAGATCAACAGAGATATATTCTTCGAATGCTTGAGAAGTCGCTCGCAAGGGAGCTAGATCTTGAAAAGAAGTTAGCAGAGTCAAGAAATAACGAAGAACTAAAGTTGAAACTCCGCTACACTGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTTGTTTGGGGAAGATTTCTTGAAGCAGACAATGCTACCGAGGTGTTAATGGGGATTTCGAAAAGTATAATGGGACGTCTCCAAGTAACTGAGTTCAACCTCAACGGTTATATGCAGCGAGAAAATGAGCTAAAATTGAATATTCAAATTTTAATCGAACAACTTAAGGCTAAAGATGCTGCTTTAGAGAAGAACGGGAGATGTAATGTTAATGTTGACGATACTCAGGAAAATACTGAGGTGTTGGATTTGAGGGAAAAGGTGAAAATTCTAGAAGAAGAACGAAAGAATTTTGAGGTTCAGATAAATTCTCTGAGTGAAGAGAATGAAGCCTGTCATGAACATCTTATAGAAATAGAAAATTTTGCCGAATCTCTAAAAGAAAGCATTGATATAGCAGAAAATCGAGCTGAGAGTGCTGAAGCAAAGGTTACACAGTTAACTGAAACGAACATGGAACTTACTGAAGAGCTGAACTTTCTTAAAGGGAGTGCTAGTACTGCCGAGAAAAAAGTCGGTTCGCTTGAGAAGCAACTGAGGGAGCTAGATATCCAACTACAGAATGCGAAGGCATCTTCTGAAGCAGGTCAAGAACAGCAGAATATGTTATACACAGCAATTTGGGATATGGAAATATTAATTGAAGAGCTAAAATCTAAGGTTTCAAAAGCTGAAGGTAATAAAGATAGCGCTGAAGAACAATGCATTATGCTATCTGAAAACAACCTTGAACTTCATAAAGAGCTGGATCTCTTCAAGTCGAGAATGCTTTGCATGAAAACATCATTGGATCACGCCAGCAGTACAAAATTATCAAGTGCAAAAGAAATTGATACCAGAACAAAGTTTATCATGGATTTGGTAATGCAACTAGCTACTGAAAGGGAGCGCATTAATAAACAGGTATTTACGTTTAACCTCGTCAAATAAGTTCTATGTTTTTATCTTTTATGGAATCTCAATTTGGTCCTTTAATGATCATTTCATGCAATTTTTGTTCACCTTAACTTTGTATACCAAGTCCAAATTGAACTGAAAATATTCAAGGTATCAATTAACGAAATTTAACATAGAAGTTTCTAATTACTCATTAGAGCATCTTCAATGGGAGCTGTTTTGCCTAACATTGATGTAACTCTCTCAGGAGGGGAGAGAAAATTGATACCATATTAAGAAACTGTGAAAATGTGAATGTGATTCATTAGATTGAACAAAGATTACATCAATGTATTTATACACTTTGCTTATTGTGCCATCAATCTAGAATGTACTACACTAACGAAGCTAAAAGTACTACTCTATGTTAATCACTTGTACTGCAAGCTTTCCTTATCTCCATGCTTATTTTTCCTTGTTGTTTTACTCTTGGAGTTGGAGAATCGTATCCTCTCGAATAAATACGTGTATTGTTTCCATTAATCAATAACAGTATCTTTTTTTTAATTCCTTTGCTTATTCTGAACCAGTTACCACTACGTTCTTCCTGCAGCTAGATGCTTTAAAACAGGAGAATAAAAGTTTGGTAGGAAAGTTAAAGGAGACTAAAATTGGTGCATGCAACAATGGGCTAATTAACAGAAATGAAGATCAAGCTTCCAACATTGACTCAAGCAATGATAGCTGTACAAAATCATTTGATGAAGAAGGAATGGCACACTTCAATAAAACCTTTCAGGCAGGTATCTTTTTTATCAGCCTATTCCTTTTAACTAGTTGATATTATGTTGGTAGGCTTTATTTACAGCTGCTATGAAGCACGGACACTTCTGGGTTAGACGTGTCGCGGTGTCAACACGACACCGACACTTGTAATTACACTGAATTATGTGATTTTTTCAAATTATTAGCTGTGTCGGCGTGTCAGTGTCCATGTCCGTGTCGTGTCCGGTGTCCGTATCCTCTTCATACAGGACAATCAACTATATCCATGTTTTTATGTTCTTTTCTTTTGAGAATAAAAATGGAAGTAAAACAAGTAACAGATAACTATCCCATTGATTAGGATATGCTTTGCATTTTTACAGCAACCAAAGACCATAATATCCCAGTTGGAGCATGCATAATAATCATATCTAGCTTGTTACAAATAAAATCACTATCCACCCGATTCAGTGCTTTTGTAAACAAGTCCATTCCTTGGTTGCATATTCTAACATAGGAAGTAGATACAAGTTTTCGTTAAACCTTCTCTCTGATAAAATGACAATCTATCTCAACGTGCATTGTTCAATCATGGAAAATTGGATTTGATGTAATATGAATGCCAACCTAGTTATTATGCCTAAATTTTTTAAGAAAAGTATTTCCAAATCCCATCTTTTCCAAGAATTCTTACACATAAACACACAAGTCGTTTGAGCCATAGCGCTTAACTTCACTTTTGCACTGGATTTTGGCACCACGTGTTTTGGTCTACACTTTATTCTTAATACTTCGTTTTAGAATTTATTTGTATATACCGACAATATGAAAAAGATTTATAGCATGTTTGGATCAGCTTTGGGATGCTAAATTTCACACCCCAATTTAAGTTAGACATGATATTTATAGCTTTTGGTCTTCCACGAGAATTCACTGCACAATTGTATTAACAAAGTGCATCCAAACCTTAGCTTAGACTATCGCAAAATCATATTGTCATGTACACTAAAAGCTTCTCCCTTTCTTGATTTCTATTATTAGGTGGGTGA

Protein sequence

>MS.gene84812.t1

MDAALEKLYSLKGFSTKENDIQDIDISLQALTEIDHRLAYSSEKLVNLHVLYIYLLARENDLEEIDSKNTCDLENSFEKAMMFDLLSGILNFEATELDNFMDTLHEEIVDARHKIMSCRHLTEVFFIMDEKLQDSEESKKQLQQQLLELKIQSSRLHKSLVAFQHENWEMGKALNLSENSHVSNVKVKTKDQRMVDQQRYILRMLEKSLARELDLEKKLAESRNNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCNVNVDDTQENTEVLDLREKVKILEEERKNFEVQINSLSEENEACHEHLIEIENFAESLKESIDIAENRAESAEAKVTQLTETNMELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEAGQEQQNMLYTAIWDMEILIEELKSKVSKAEGNKDSAEEQCIMLSENNLELHKELDLFKSRMLCMKTSLDHASSTKLSSAKEIDTRTKFIMDLVMQLATERERINKQLDALKQENKSLVGKLKETKIGACNNGLINRNEDQASNIDSSNDSCTKSFDEEGMAHFNKTFQAGG