AlfalfaGEDB | MS.gene84812

M. sativa cultivar XinJiangDaYe / MS.gene84812

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84812.t1	RHN51642.1	91.5	612	52	0	1	612	1	612	1.60E-238	835.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84812.t1	A8MQR0	48.2	564	264	9	12	573	11	548	1.3e-71	272.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84812.t1	A0A396HE81	91.5	612	52	0	1	612	1	612	1.2e-238	835.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene84812	0.812633	3.84E-51	-1.69E-46
MS.gene04933	MS.gene84812	0.81526	1.01E-51	-1.69E-46
MS.gene049378	MS.gene84812	0.852007	6.12E-61	-1.69E-46
MS.gene049435	MS.gene84812	0.810989	8.76E-51	-1.69E-46
MS.gene050226	MS.gene84812	0.869877	2.23E-66	-1.69E-46
MS.gene050227	MS.gene84812	0.864534	1.13E-64	-1.69E-46
MS.gene050228	MS.gene84812	0.868849	4.81E-66	-1.69E-46
MS.gene050442	MS.gene84812	0.851693	7.52E-61	-1.69E-46
MS.gene050623	MS.gene84812	-0.834925	2.26E-56	-1.69E-46
MS.gene050633	MS.gene84812	0.81597	7.04E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene024366	MS.gene84812	PPI
MS.gene84812	MS.gene050727	PPI
MS.gene84812	MS.gene025832	PPI
MS.gene84812	MS.gene22770	PPI
MS.gene84812	MS.gene29262	PPI
MS.gene84812	MS.gene88573	PPI
MS.gene84812	MS.gene45459	PPI
MS.gene84812	MS.gene003842	PPI
MS.gene84812	MS.gene91080	PPI
MS.gene84812	MS.gene029347	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84812.t1	MTR_3g086660	39.832	595	322	11	1	565	1	589	2.41e-106	333
MS.gene84812.t1	MTR_7g017690	37.943	564	316	10	16	570	10	548	6.88e-92	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84812.t1	AT1G68910	45.763	590	285	11	28	613	24	582	6.98e-143	427
MS.gene84812.t1	AT1G68910	45.763	590	285	11	28	613	24	582	6.98e-143	427
MS.gene84812.t1	AT1G68910	47.445	548	263	8	28	573	24	548	2.40e-141	424
MS.gene84812.t1	AT5G11390	40.496	605	309	11	15	574	25	623	1.15e-105	335

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Find 84 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAGAATAAAAGTT+TGG	0.356600	6.3:-49776909	MS.gene84812:CDS
AAAATTGGTGCATGCAACAA+TGG	0.496724	6.3:-49776866	MS.gene84812:CDS
AAATTGGTGCATGCAACAAT+GGG	0.516712	6.3:-49776865	MS.gene84812:CDS
AACAAAGTTTATCATGGATT+TGG	0.269879	6.3:-49777570	MS.gene84812:CDS
AACAGAGCTTGACAATTTCA+TGG	0.456939	6.3:-49778966	MS.gene84812:CDS
AAGAAGCAGCAGAAGTTGTT+TGG	0.325223	6.3:-49778423	MS.gene84812:CDS
AAGAGCTGAACTTTCTTAAA+GGG	0.392409	6.3:-49777943	MS.gene84812:CDS
AAGGGAGCGCATTAATAAAC+AGG	0.433397	6.3:-49777528	MS.gene84812:intron
AAGTTAAAGGAGACTAAAAT+TGG	0.430349	6.3:-49776881	MS.gene84812:CDS
AAGTTTGGTAGGAAAGTTAA+AGG	0.285452	6.3:-49776894	MS.gene84812:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATAGAACTTATTTGACG+AGG	+	chr6.3:49777500-49777519	None:intergenic	30.0%
AAGAGCTGAACTTTCTTAAA+GGG	-	chr6.3:49777046-49777065	MS.gene84812:intron	30.0%
AAGTTTGGTAGGAAAGTTAA+AGG	-	chr6.3:49778095-49778114	MS.gene84812:CDS	30.0%
AATACACGTATTTATTCGAG+AGG	+	chr6.3:49777968-49777987	None:intergenic	30.0%
ACAACAAGGAAAAATAAGCA+TGG	+	chr6.3:49777918-49777937	None:intergenic	30.0%
ACACTTCAATAAAACCTTTC+AGG	-	chr6.3:49778233-49778252	MS.gene84812:CDS	30.0%
ATCATTTGATGAAGAAGGAA+TGG	-	chr6.3:49778209-49778228	MS.gene84812:CDS	30.0%
ATCCATGATAAACTTTGTTC+TGG	+	chr6.3:49777418-49777437	None:intergenic	30.0%
ATGATGTTTGATCTATTGTC+GGG	-	chr6.3:49775982-49776001	MS.gene84812:intron	30.0%
CAAAGCATATCCTAATCAAT+GGG	+	chr6.3:49778573-49778592	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	49775742	49779269	49775742	ID=MS.gene84812
chr6.3	mRNA	49775742	49779269	49775742	ID=MS.gene84812.t1;Parent=MS.gene84812
chr6.3	exon	49778768	49779269	49778768	ID=MS.gene84812.t1.exon1;Parent=MS.gene84812.t1
chr6.3	CDS	49778768	49779269	49778768	ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3	exon	49777529	49778670	49777529	ID=MS.gene84812.t1.exon2;Parent=MS.gene84812.t1
chr6.3	CDS	49777529	49778670	49777529	ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3	exon	49776753	49776942	49776753	ID=MS.gene84812.t1.exon3;Parent=MS.gene84812.t1
chr6.3	CDS	49776753	49776942	49776753	ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1
chr6.3	exon	49775742	49775749	49775742	ID=MS.gene84812.t1.exon4;Parent=MS.gene84812.t1
chr6.3	CDS	49775742	49775749	49775742	ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1

Gene Sequence

>MS.gene84812

ATGGATGCAGCTTTAGAAAAACTCTACTCACTCAAGGGTTTCTCAACAAAAGAAAACGACATCCAAGATATTGATATATCCTTGCAAGCCCTAACAGAAATAGATCATCGGCTAGCCTATTCTTCCGAGAAGCTGGTGAACTTACATGTTCTGTATATTTATCTATTGGCTCGAGAAAACGATCTTGAAGAAATAGATTCAAAGAATACCTGCGACTTAGAAAACTCATTTGAGAAGGCAATGATGTTTGATCTATTGTCGGGCATTTTAAATTTTGAGGCAACAGAGCTTGACAATTTCATGGACACTCTACACGAAGAAATTGTTGATGCTCGTCATAAAATAATGTCGTGCAGACATTTGACTGAGGTTTTCTTTATTATGGATGAAAAATTGCAAGATTCCGAAGAGTCTAAGAAGCAGTTACAACAACAGTTATTGGAGTTAAAGATTCAGTCATCGCGACTTCATAAAAGTCTTGTGGCTTTCCAACATGAGAATTGTAAGTTGAAATATTACACAGATTTTTCTTTTTGTTCGAAAAATTTCATTGAGTTATTTTTCATTTATTTATCGTTTTTAGTCATTCATATACACAGGGGAAATGGGGAAGGCTTTGAATTTATCAGAAAATAGTCATGTGTCAAATGTGAAAGTGAAAACGAAAGATCAGAGAATGGTAGATCAACAGAGATATATTCTTCGAATGCTTGAGAAGTCGCTCGCAAGGGAGCTAGATCTTGAAAAGAAGTTAGCAGAGTCAAGAAATAACGAAGAACTAAAGTTGAAACTCCGCTACACTGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTTGTTTGGGGAAGATTTCTTGAAGCAGACAATGCTACCGAGGTGTTAATGGGGATTTCGAAAAGTATAATGGGACGTCTCCAAGTAACTGAGTTCAACCTCAACGGTTATATGCAGCGAGAAAATGAGCTAAAATTGAATATTCAAATTTTAATCGAACAACTTAAGGCTAAAGATGCTGCTTTAGAGAAGAACGGGAGATGTAATGTTAATGTTGACGATACTCAGGAAAATACTGAGGTGTTGGATTTGAGGGAAAAGGTGAAAATTCTAGAAGAAGAACGAAAGAATTTTGAGGTTCAGATAAATTCTCTGAGTGAAGAGAATGAAGCCTGTCATGAACATCTTATAGAAATAGAAAATTTTGCCGAATCTCTAAAAGAAAGCATTGATATAGCAGAAAATCGAGCTGAGAGTGCTGAAGCAAAGGTTACACAGTTAACTGAAACGAACATGGAACTTACTGAAGAGCTGAACTTTCTTAAAGGGAGTGCTAGTACTGCCGAGAAAAAAGTCGGTTCGCTTGAGAAGCAACTGAGGGAGCTAGATATCCAACTACAGAATGCGAAGGCATCTTCTGAAGCAGGTCAAGAACAGCAGAATATGTTATACACAGCAATTTGGGATATGGAAATATTAATTGAAGAGCTAAAATCTAAGGTTTCAAAAGCTGAAGGTAATAAAGATAGCGCTGAAGAACAATGCATTATGCTATCTGAAAACAACCTTGAACTTCATAAAGAGCTGGATCTCTTCAAGTCGAGAATGCTTTGCATGAAAACATCATTGGATCACGCCAGCAGTACAAAATTATCAAGTGCAAAAGAAATTGATACCAGAACAAAGTTTATCATGGATTTGGTAATGCAACTAGCTACTGAAAGGGAGCGCATTAATAAACAGGTATTTACGTTTAACCTCGTCAAATAAGTTCTATGTTTTTATCTTTTATGGAATCTCAATTTGGTCCTTTAATGATCATTTCATGCAATTTTTGTTCACCTTAACTTTGTATACCAAGTCCAAATTGAACTGAAAATATTCAAGGTATCAATTAACGAAATTTAACATAGAAGTTTCTAATTACTCATTAGAGCATCTTCAATGGGAGCTGTTTTGCCTAACATTGATGTAACTCTCTCAGGAGGGGAGAGAAAATTGATACCATATTAAGAAACTGTGAAAATGTGAATGTGATTCATTAGATTGAACAAAGATTACATCAATGTATTTATACACTTTGCTTATTGTGCCATCAATCTAGAATGTACTACACTAACGAAGCTAAAAGTACTACTCTATGTTAATCACTTGTACTGCAAGCTTTCCTTATCTCCATGCTTATTTTTCCTTGTTGTTTTACTCTTGGAGTTGGAGAATCGTATCCTCTCGAATAAATACGTGTATTGTTTCCATTAATCAATAACAGTATCTTTTTTTTAATTCCTTTGCTTATTCTGAACCAGTTACCACTACGTTCTTCCTGCAGCTAGATGCTTTAAAACAGGAGAATAAAAGTTTGGTAGGAAAGTTAAAGGAGACTAAAATTGGTGCATGCAACAATGGGCTAATTAACAGAAATGAAGATCAAGCTTCCAACATTGACTCAAGCAATGATAGCTGTACAAAATCATTTGATGAAGAAGGAATGGCACACTTCAATAAAACCTTTCAGGCAGGTATCTTTTTTATCAGCCTATTCCTTTTAACTAGTTGATATTATGTTGGTAGGCTTTATTTACAGCTGCTATGAAGCACGGACACTTCTGGGTTAGACGTGTCGCGGTGTCAACACGACACCGACACTTGTAATTACACTGAATTATGTGATTTTTTCAAATTATTAGCTGTGTCGGCGTGTCAGTGTCCATGTCCGTGTCGTGTCCGGTGTCCGTATCCTCTTCATACAGGACAATCAACTATATCCATGTTTTTATGTTCTTTTCTTTTGAGAATAAAAATGGAAGTAAAACAAGTAACAGATAACTATCCCATTGATTAGGATATGCTTTGCATTTTTACAGCAACCAAAGACCATAATATCCCAGTTGGAGCATGCATAATAATCATATCTAGCTTGTTACAAATAAAATCACTATCCACCCGATTCAGTGCTTTTGTAAACAAGTCCATTCCTTGGTTGCATATTCTAACATAGGAAGTAGATACAAGTTTTCGTTAAACCTTCTCTCTGATAAAATGACAATCTATCTCAACGTGCATTGTTCAATCATGGAAAATTGGATTTGATGTAATATGAATGCCAACCTAGTTATTATGCCTAAATTTTTTAAGAAAAGTATTTCCAAATCCCATCTTTTCCAAGAATTCTTACACATAAACACACAAGTCGTTTGAGCCATAGCGCTTAACTTCACTTTTGCACTGGATTTTGGCACCACGTGTTTTGGTCTACACTTTATTCTTAATACTTCGTTTTAGAATTTATTTGTATATACCGACAATATGAAAAAGATTTATAGCATGTTTGGATCAGCTTTGGGATGCTAAATTTCACACCCCAATTTAAGTTAGACATGATATTTATAGCTTTTGGTCTTCCACGAGAATTCACTGCACAATTGTATTAACAAAGTGCATCCAAACCTTAGCTTAGACTATCGCAAAATCATATTGTCATGTACACTAAAAGCTTCTCCCTTTCTTGATTTCTATTATTAGGTGGGTGA

Protein sequence

>MS.gene84812.t1

MDAALEKLYSLKGFSTKENDIQDIDISLQALTEIDHRLAYSSEKLVNLHVLYIYLLARENDLEEIDSKNTCDLENSFEKAMMFDLLSGILNFEATELDNFMDTLHEEIVDARHKIMSCRHLTEVFFIMDEKLQDSEESKKQLQQQLLELKIQSSRLHKSLVAFQHENWEMGKALNLSENSHVSNVKVKTKDQRMVDQQRYILRMLEKSLARELDLEKKLAESRNNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCNVNVDDTQENTEVLDLREKVKILEEERKNFEVQINSLSEENEACHEHLIEIENFAESLKESIDIAENRAESAEAKVTQLTETNMELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEAGQEQQNMLYTAIWDMEILIEELKSKVSKAEGNKDSAEEQCIMLSENNLELHKELDLFKSRMLCMKTSLDHASSTKLSSAKEIDTRTKFIMDLVMQLATERERINKQLDALKQENKSLVGKLKETKIGACNNGLINRNEDQASNIDSSNDSCTKSFDEEGMAHFNKTFQAGG