Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84812.t1 | RHN51642.1 | 91.5 | 612 | 52 | 0 | 1 | 612 | 1 | 612 | 1.60E-238 | 835.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84812.t1 | A8MQR0 | 48.2 | 564 | 264 | 9 | 12 | 573 | 11 | 548 | 1.3e-71 | 272.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84812.t1 | A0A396HE81 | 91.5 | 612 | 52 | 0 | 1 | 612 | 1 | 612 | 1.2e-238 | 835.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene84812 | 0.812633 | 3.84E-51 | -1.69E-46 |
MS.gene04933 | MS.gene84812 | 0.81526 | 1.01E-51 | -1.69E-46 |
MS.gene049378 | MS.gene84812 | 0.852007 | 6.12E-61 | -1.69E-46 |
MS.gene049435 | MS.gene84812 | 0.810989 | 8.76E-51 | -1.69E-46 |
MS.gene050226 | MS.gene84812 | 0.869877 | 2.23E-66 | -1.69E-46 |
MS.gene050227 | MS.gene84812 | 0.864534 | 1.13E-64 | -1.69E-46 |
MS.gene050228 | MS.gene84812 | 0.868849 | 4.81E-66 | -1.69E-46 |
MS.gene050442 | MS.gene84812 | 0.851693 | 7.52E-61 | -1.69E-46 |
MS.gene050623 | MS.gene84812 | -0.834925 | 2.26E-56 | -1.69E-46 |
MS.gene050633 | MS.gene84812 | 0.81597 | 7.04E-52 | -1.69E-46 |
MS.gene050719 | MS.gene84812 | 0.807636 | 4.59E-50 | -1.69E-46 |
MS.gene050721 | MS.gene84812 | 0.805599 | 1.23E-49 | -1.69E-46 |
MS.gene050724 | MS.gene84812 | 0.804145 | 2.49E-49 | -1.69E-46 |
MS.gene050762 | MS.gene84812 | 0.809658 | 1.70E-50 | -1.69E-46 |
MS.gene050763 | MS.gene84812 | 0.811975 | 5.35E-51 | -1.69E-46 |
MS.gene050787 | MS.gene84812 | 0.85321 | 2.78E-61 | -1.69E-46 |
MS.gene050820 | MS.gene84812 | 0.805913 | 1.06E-49 | -1.69E-46 |
MS.gene051210 | MS.gene84812 | 0.816396 | 5.65E-52 | -1.69E-46 |
MS.gene051568 | MS.gene84812 | 0.811277 | 7.59E-51 | -1.69E-46 |
MS.gene051860 | MS.gene84812 | 0.834977 | 2.19E-56 | -1.69E-46 |
MS.gene051983 | MS.gene84812 | 0.800075 | 1.71E-48 | -1.69E-46 |
MS.gene052042 | MS.gene84812 | 0.820545 | 6.48E-53 | -1.69E-46 |
MS.gene052333 | MS.gene84812 | 0.81057 | 1.08E-50 | -1.69E-46 |
MS.gene052384 | MS.gene84812 | 0.819384 | 1.19E-52 | -1.69E-46 |
MS.gene052389 | MS.gene84812 | 0.810947 | 8.95E-51 | -1.69E-46 |
MS.gene053147 | MS.gene84812 | 0.816464 | 5.46E-52 | -1.69E-46 |
MS.gene053221 | MS.gene84812 | 0.80972 | 1.65E-50 | -1.69E-46 |
MS.gene053836 | MS.gene84812 | 0.81469 | 1.35E-51 | -1.69E-46 |
MS.gene054291 | MS.gene84812 | -0.821306 | 4.33E-53 | -1.69E-46 |
MS.gene054379 | MS.gene84812 | 0.823861 | 1.10E-53 | -1.69E-46 |
MS.gene054467 | MS.gene84812 | 0.83624 | 1.05E-56 | -1.69E-46 |
MS.gene054468 | MS.gene84812 | 0.867401 | 1.41E-65 | -1.69E-46 |
MS.gene054473 | MS.gene84812 | 0.807588 | 4.70E-50 | -1.69E-46 |
MS.gene054581 | MS.gene84812 | 0.816267 | 6.04E-52 | -1.69E-46 |
MS.gene054826 | MS.gene84812 | 0.823684 | 1.21E-53 | -1.69E-46 |
MS.gene054930 | MS.gene84812 | 0.854195 | 1.45E-61 | -1.69E-46 |
MS.gene055356 | MS.gene84812 | 0.802378 | 5.77E-49 | -1.69E-46 |
MS.gene055358 | MS.gene84812 | 0.807104 | 5.95E-50 | -1.69E-46 |
MS.gene055701 | MS.gene84812 | 0.814713 | 1.34E-51 | -1.69E-46 |
MS.gene05595 | MS.gene84812 | 0.809141 | 2.19E-50 | -1.69E-46 |
MS.gene056506 | MS.gene84812 | 0.809726 | 1.64E-50 | -1.69E-46 |
MS.gene056979 | MS.gene84812 | 0.803172 | 3.96E-49 | -1.69E-46 |
MS.gene057194 | MS.gene84812 | 0.810512 | 1.11E-50 | -1.69E-46 |
MS.gene057469 | MS.gene84812 | 0.826275 | 2.97E-54 | -1.69E-46 |
MS.gene05761 | MS.gene84812 | 0.839431 | 1.59E-57 | -1.69E-46 |
MS.gene058710 | MS.gene84812 | 0.801544 | 8.56E-49 | -1.69E-46 |
MS.gene059128 | MS.gene84812 | 0.80012 | 1.67E-48 | -1.69E-46 |
MS.gene059609 | MS.gene84812 | 0.80167 | 8.07E-49 | -1.69E-46 |
MS.gene059664 | MS.gene84812 | 0.809418 | 1.91E-50 | -1.69E-46 |
MS.gene060137 | MS.gene84812 | -0.801929 | 7.14E-49 | -1.69E-46 |
MS.gene060404 | MS.gene84812 | 0.801809 | 7.56E-49 | -1.69E-46 |
MS.gene06052 | MS.gene84812 | 0.818788 | 1.63E-52 | -1.69E-46 |
MS.gene060683 | MS.gene84812 | 0.828399 | 9.19E-55 | -1.69E-46 |
MS.gene060685 | MS.gene84812 | 0.825132 | 5.54E-54 | -1.69E-46 |
MS.gene060802 | MS.gene84812 | 0.817037 | 4.06E-52 | -1.69E-46 |
MS.gene060803 | MS.gene84812 | 0.802609 | 5.17E-49 | -1.69E-46 |
MS.gene060998 | MS.gene84812 | 0.803969 | 2.70E-49 | -1.69E-46 |
MS.gene061040 | MS.gene84812 | -0.816423 | 5.57E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene84812 | MS.gene050727 | PPI |
MS.gene84812 | MS.gene025832 | PPI |
MS.gene84812 | MS.gene22770 | PPI |
MS.gene84812 | MS.gene29262 | PPI |
MS.gene84812 | MS.gene88573 | PPI |
MS.gene84812 | MS.gene45459 | PPI |
MS.gene024366 | MS.gene84812 | PPI |
MS.gene84812 | MS.gene003842 | PPI |
MS.gene84812 | MS.gene91080 | PPI |
MS.gene84812 | MS.gene029347 | PPI |
MS.gene84812 | MS.gene76253 | PPI |
MS.gene84812 | MS.gene026206 | PPI |
MS.gene84812 | MS.gene065077 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84812.t1 | MTR_3g086660 | 39.832 | 595 | 322 | 11 | 1 | 565 | 1 | 589 | 2.41e-106 | 333 |
MS.gene84812.t1 | MTR_7g017690 | 37.943 | 564 | 316 | 10 | 16 | 570 | 10 | 548 | 6.88e-92 | 296 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84812.t1 | AT1G68910 | 45.763 | 590 | 285 | 11 | 28 | 613 | 24 | 582 | 6.98e-143 | 427 |
MS.gene84812.t1 | AT1G68910 | 45.763 | 590 | 285 | 11 | 28 | 613 | 24 | 582 | 6.98e-143 | 427 |
MS.gene84812.t1 | AT1G68910 | 47.445 | 548 | 263 | 8 | 28 | 573 | 24 | 548 | 2.40e-141 | 424 |
MS.gene84812.t1 | AT5G11390 | 40.496 | 605 | 309 | 11 | 15 | 574 | 25 | 623 | 1.15e-105 | 335 |
Find 84 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGAGCTGAACTTTCTTAA+AGG | 0.224825 | 6.3:-49777944 | MS.gene84812:CDS |
GCAGTTACAACAACAGTTAT+TGG | 0.246407 | 6.3:-49778828 | MS.gene84812:CDS |
CAATGCTACCGAGGTGTTAA+TGG | 0.262222 | 6.3:-49778380 | MS.gene84812:CDS |
AACAAAGTTTATCATGGATT+TGG | 0.269879 | 6.3:-49777570 | MS.gene84812:CDS |
ATATGTTATACACAGCAATT+TGG | 0.281088 | 6.3:-49777808 | MS.gene84812:CDS |
AAGTTTGGTAGGAAAGTTAA+AGG | 0.285452 | 6.3:-49776894 | MS.gene84812:CDS |
AATTGAAGAGCTAAAATCTA+AGG | 0.296015 | 6.3:-49777771 | MS.gene84812:CDS |
ATACACAGCAATTTGGGATA+TGG | 0.307575 | 6.3:-49777801 | MS.gene84812:CDS |
TGTTCTGTATATTTATCTAT+TGG | 0.307654 | 6.3:-49779101 | MS.gene84812:CDS |
GGGGATTTCGAAAAGTATAA+TGG | 0.309555 | 6.3:-49778359 | MS.gene84812:CDS |
AAGAAGCAGCAGAAGTTGTT+TGG | 0.325223 | 6.3:-49778423 | MS.gene84812:CDS |
ATCCATGATAAACTTTGTTC+TGG | 0.336896 | 6.3:+49777574 | None:intergenic |
TACTGAGGTGTTGGATTTGA+GGG | 0.336994 | 6.3:-49778176 | MS.gene84812:CDS |
ACACTTCAATAAAACCTTTC+AGG | 0.340874 | 6.3:-49776756 | MS.gene84812:CDS |
ATTCATATACACAGGGGAAA+TGG | 0.346219 | 6.3:-49778662 | MS.gene84812:intron |
GCCGATGATCTATTTCTGTT+AGG | 0.352447 | 6.3:+49779158 | None:intergenic |
AGAAGCAGCAGAAGTTGTTT+GGG | 0.356426 | 6.3:-49778422 | MS.gene84812:CDS |
AAAACAGGAGAATAAAAGTT+TGG | 0.356600 | 6.3:-49776909 | MS.gene84812:CDS |
TTCATATACACAGGGGAAAT+GGG | 0.379165 | 6.3:-49778661 | MS.gene84812:intron |
AATGCTACCGAGGTGTTAAT+GGG | 0.379167 | 6.3:-49778379 | MS.gene84812:CDS |
CCGATGATCTATTTCTGTTA+GGG | 0.380336 | 6.3:+49779159 | None:intergenic |
CCAGCTCTTTATGAAGTTCA+AGG | 0.382440 | 6.3:+49777684 | None:intergenic |
AAGAGCTGAACTTTCTTAAA+GGG | 0.392409 | 6.3:-49777943 | MS.gene84812:CDS |
TATGTTATACACAGCAATTT+GGG | 0.393418 | 6.3:-49777807 | MS.gene84812:CDS |
GCTTTGCATGAAAACATCAT+TGG | 0.410569 | 6.3:-49777642 | MS.gene84812:CDS |
ATGCCTTCGCATTCTGTAGT+TGG | 0.418735 | 6.3:+49777858 | None:intergenic |
GGGATTTCGAAAAGTATAAT+GGG | 0.426529 | 6.3:-49778358 | MS.gene84812:CDS |
TACCAGAACAAAGTTTATCA+TGG | 0.428221 | 6.3:-49777576 | MS.gene84812:CDS |
ATGTAAGTTCACCAGCTTCT+CGG | 0.429566 | 6.3:+49779123 | None:intergenic |
AAGTTAAAGGAGACTAAAAT+TGG | 0.430349 | 6.3:-49776881 | MS.gene84812:CDS |
TGAGGTTGAACTCAGTTACT+TGG | 0.431369 | 6.3:+49778329 | None:intergenic |
AAGGGAGCGCATTAATAAAC+AGG | 0.433397 | 6.3:-49777528 | MS.gene84812:intron |
GCAAGGATATATCAATATCT+TGG | 0.438936 | 6.3:+49779185 | None:intergenic |
TAACTGCTTCTTAGACTCTT+CGG | 0.444785 | 6.3:+49778844 | None:intergenic |
ATGCTGCTTTAGAGAAGAAC+GGG | 0.446606 | 6.3:-49778234 | MS.gene84812:CDS |
ATACTGAGGTGTTGGATTTG+AGG | 0.449553 | 6.3:-49778177 | MS.gene84812:CDS |
CACCAGCTTCTCGGAAGAAT+AGG | 0.454696 | 6.3:+49779132 | None:intergenic |
AACAGAGCTTGACAATTTCA+TGG | 0.456939 | 6.3:-49778966 | MS.gene84812:CDS |
GCAGCTAGATGCTTTAAAAC+AGG | 0.463620 | 6.3:-49776924 | MS.gene84812:intron |
ACAAAATCATTTGATGAAGA+AGG | 0.480014 | 6.3:-49776785 | MS.gene84812:CDS |
TATTTCTGTTAGGGCTTGCA+AGG | 0.481548 | 6.3:+49779168 | None:intergenic |
AATGATGTTTGATCTATTGT+CGG | 0.485514 | 6.3:-49779008 | MS.gene84812:CDS |
AGCCTATTCTTCCGAGAAGC+TGG | 0.487690 | 6.3:-49779134 | MS.gene84812:CDS |
TCAACTTACAATTCTCATGT+TGG | 0.490472 | 6.3:+49778759 | None:intergenic |
TCAGGAAAATACTGAGGTGT+TGG | 0.490567 | 6.3:-49778185 | MS.gene84812:CDS |
ATCATTGCTTGAGTCAATGT+TGG | 0.490619 | 6.3:+49776814 | None:intergenic |
TTCTATAAGATGTTCATGAC+AGG | 0.491221 | 6.3:+49778078 | None:intergenic |
TTCAATAAAACCTTTCAGGC+AGG | 0.495569 | 6.3:-49776752 | MS.gene84812:intron |
AAAATTGGTGCATGCAACAA+TGG | 0.496724 | 6.3:-49776866 | MS.gene84812:CDS |
CAGGAGAATAAAAGTTTGGT+AGG | 0.501234 | 6.3:-49776905 | MS.gene84812:CDS |
ATCATTTGATGAAGAAGGAA+TGG | 0.507901 | 6.3:-49776780 | MS.gene84812:CDS |
ATGATGTTTGATCTATTGTC+GGG | 0.509245 | 6.3:-49779007 | MS.gene84812:CDS |
AAATTGGTGCATGCAACAAT+GGG | 0.516712 | 6.3:-49776865 | MS.gene84812:CDS |
CTCGCTGCATATAACCGTTG+AGG | 0.524764 | 6.3:+49778311 | None:intergenic |
TGCTTGAGAAGTCGCTCGCA+AGG | 0.526338 | 6.3:-49778540 | MS.gene84812:CDS |
GGTGTTGGATTTGAGGGAAA+AGG | 0.526687 | 6.3:-49778170 | MS.gene84812:CDS |
GCGAAGGCATCTTCTGAAGC+AGG | 0.527456 | 6.3:-49777845 | MS.gene84812:CDS |
CCTTGAACTTCATAAAGAGC+TGG | 0.546083 | 6.3:-49777684 | MS.gene84812:CDS |
CTTAGAAAACTCATTTGAGA+AGG | 0.549658 | 6.3:-49779032 | MS.gene84812:CDS |
AGCTGAGAGTGCTGAAGCAA+AGG | 0.555426 | 6.3:-49778002 | MS.gene84812:CDS |
TAATGCAACTAGCTACTGAA+AGG | 0.557736 | 6.3:-49777547 | MS.gene84812:CDS |
TGTTAATGTTGACGATACTC+AGG | 0.562953 | 6.3:-49778203 | MS.gene84812:CDS |
GAAAACGAAAGATCAGAGAA+TGG | 0.579935 | 6.3:-49778590 | MS.gene84812:CDS |
CGAAATCCCCATTAACACCT+CGG | 0.586371 | 6.3:+49778372 | None:intergenic |
CCCTAACAGAAATAGATCAT+CGG | 0.587259 | 6.3:-49779159 | MS.gene84812:CDS |
ATACACAGGGGAAATGGGGA+AGG | 0.589178 | 6.3:-49778656 | MS.gene84812:intron |
GCGACTTCATAAAAGTCTTG+TGG | 0.597403 | 6.3:-49778786 | MS.gene84812:CDS |
ACTCCGCTACACTGAACAAG+TGG | 0.600856 | 6.3:-49778458 | MS.gene84812:CDS |
GAAGCAGCAGAAGTTGTTTG+GGG | 0.601416 | 6.3:-49778421 | MS.gene84812:CDS |
ACAGTTAACTGAAACGAACA+TGG | 0.602578 | 6.3:-49777975 | MS.gene84812:CDS |
TCTAAGGTTTCAAAAGCTGA+AGG | 0.603452 | 6.3:-49777755 | MS.gene84812:CDS |
AATGCAACTAGCTACTGAAA+GGG | 0.605712 | 6.3:-49777546 | MS.gene84812:CDS |
TCATATACACAGGGGAAATG+GGG | 0.609571 | 6.3:-49778660 | MS.gene84812:intron |
GATGCTGCTTTAGAGAAGAA+CGG | 0.611153 | 6.3:-49778235 | MS.gene84812:CDS |
ATGCCACTTGTTCAGTGTAG+CGG | 0.624346 | 6.3:+49778455 | None:intergenic |
GTAACTGAGTTCAACCTCAA+CGG | 0.629441 | 6.3:-49778325 | MS.gene84812:CDS |
GTTCGCTTGAGAAGCAACTG+AGG | 0.632474 | 6.3:-49777892 | MS.gene84812:CDS |
TTCGCTTGAGAAGCAACTGA+GGG | 0.639113 | 6.3:-49777891 | MS.gene84812:CDS |
GCTTGAGAAGTCGCTCGCAA+GGG | 0.645249 | 6.3:-49778539 | MS.gene84812:CDS |
TATCCAACTACAGAATGCGA+AGG | 0.657458 | 6.3:-49777861 | MS.gene84812:CDS |
ATGCTACCGAGGTGTTAATG+GGG | 0.669958 | 6.3:-49778378 | MS.gene84812:CDS |
TGAAGCAGACAATGCTACCG+AGG | 0.684617 | 6.3:-49778389 | MS.gene84812:CDS |
GTCGTGCAGACATTTGACTG+AGG | 0.708890 | 6.3:-49778900 | MS.gene84812:CDS |
CGATACTCAGGAAAATACTG+AGG | 0.718119 | 6.3:-49778191 | MS.gene84812:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATACTTTTCTTAAAAAATTT+AGG | + | chr6.3:49778863-49778882 | None:intergenic | 10.0% |
!! | TAATAATAGAAATCAAGAAA+GGG | + | chr6.3:49779241-49779260 | None:intergenic | 15.0% |
!!! | ATAAATCTTTTTCATATTGT+CGG | + | chr6.3:49779041-49779060 | None:intergenic | 15.0% |
!!! | TTCTATGTTTTTATCTTTTA+TGG | - | chr6.3:49777511-49777530 | MS.gene84812:intron | 15.0% |
!!! | TTTTCTTTTGAGAATAAAAA+TGG | - | chr6.3:49778521-49778540 | MS.gene84812:CDS | 15.0% |
!! | AAAAAGATTTATAGCATGTT+TGG | - | chr6.3:49779049-49779068 | MS.gene84812:CDS | 20.0% |
!! | AAAATTTAGGCATAATAACT+AGG | + | chr6.3:49778850-49778869 | None:intergenic | 20.0% |
!! | AAGAAAAGAACATAAAAACA+TGG | + | chr6.3:49778508-49778527 | None:intergenic | 20.0% |
!! | AATTGAACTGAAAATATTCA+AGG | - | chr6.3:49777605-49777624 | MS.gene84812:CDS | 20.0% |
!! | ATATCATGTCTAACTTAAAT+TGG | + | chr6.3:49779104-49779123 | None:intergenic | 20.0% |
!! | CATAATATCAACTAGTTAAA+AGG | + | chr6.3:49778284-49778303 | None:intergenic | 20.0% |
!! | CTAATAATAGAAATCAAGAA+AGG | + | chr6.3:49779242-49779261 | None:intergenic | 20.0% |
!! | CTTTCTTGATTTCTATTATT+AGG | - | chr6.3:49779240-49779259 | MS.gene84812:CDS | 20.0% |
!! | TATCATGTCTAACTTAAATT+GGG | + | chr6.3:49779103-49779122 | None:intergenic | 20.0% |
!! | TGTTCTGTATATTTATCTAT+TGG | - | chr6.3:49775888-49775907 | MS.gene84812:intron | 20.0% |
!!! | AAGATACTGTTATTGATTAA+TGG | + | chr6.3:49777995-49778014 | None:intergenic | 20.0% |
!!! | AATTTTAATCGAACAACTTA+AGG | - | chr6.3:49776726-49776745 | MS.gene84812:intron | 20.0% |
!!! | ATTTTCACAGTTTCTTAATA+TGG | + | chr6.3:49777747-49777766 | None:intergenic | 20.0% |
!!! | TGAATATTTTCAGTTCAATT+TGG | + | chr6.3:49777605-49777624 | None:intergenic | 20.0% |
!!! | TTAACTAGTTGATATTATGT+TGG | - | chr6.3:49778285-49778304 | MS.gene84812:CDS | 20.0% |
! | AAAACAGGAGAATAAAAGTT+TGG | - | chr6.3:49778080-49778099 | MS.gene84812:CDS | 25.0% |
! | AACAAAGTTTATCATGGATT+TGG | - | chr6.3:49777419-49777438 | MS.gene84812:intron | 25.0% |
! | AAGTTAAAGGAGACTAAAAT+TGG | - | chr6.3:49778108-49778127 | MS.gene84812:CDS | 25.0% |
! | AATGATGTTTGATCTATTGT+CGG | - | chr6.3:49775981-49776000 | MS.gene84812:intron | 25.0% |
! | AATTGAAGAGCTAAAATCTA+AGG | - | chr6.3:49777218-49777237 | MS.gene84812:intron | 25.0% |
! | ACAAAATCATTTGATGAAGA+AGG | - | chr6.3:49778204-49778223 | MS.gene84812:CDS | 25.0% |
! | ATATGTTATACACAGCAATT+TGG | - | chr6.3:49777181-49777200 | MS.gene84812:intron | 25.0% |
! | ATCAACTAGTTAAAAGGAAT+AGG | + | chr6.3:49778278-49778297 | None:intergenic | 25.0% |
! | ATCATGTCTAACTTAAATTG+GGG | + | chr6.3:49779102-49779121 | None:intergenic | 25.0% |
! | ATTGTTCAATCATGGAAAAT+TGG | - | chr6.3:49778801-49778820 | MS.gene84812:CDS | 25.0% |
! | CTTGATTTCTATTATTAGGT+GGG | - | chr6.3:49779244-49779263 | MS.gene84812:CDS | 25.0% |
! | TAAGAATTCTTGGAAAAGAT+GGG | + | chr6.3:49778894-49778913 | None:intergenic | 25.0% |
! | TATGTTATACACAGCAATTT+GGG | - | chr6.3:49777182-49777201 | MS.gene84812:intron | 25.0% |
! | TCTTGATTTCTATTATTAGG+TGG | - | chr6.3:49779243-49779262 | MS.gene84812:CDS | 25.0% |
! | TGTTTATGTGTAAGAATTCT+TGG | + | chr6.3:49778904-49778923 | None:intergenic | 25.0% |
! | TTGCATGAAATGATCATTAA+AGG | + | chr6.3:49777551-49777570 | None:intergenic | 25.0% |
! | TTTAGTCATTCATATACACA+GGG | - | chr6.3:49776320-49776339 | MS.gene84812:intron | 25.0% |
! | TTTCAAATTATTAGCTGTGT+CGG | - | chr6.3:49778413-49778432 | MS.gene84812:CDS | 25.0% |
!! | GACATGATATTTATAGCTTT+TGG | - | chr6.3:49779114-49779133 | MS.gene84812:CDS | 25.0% |
!! | TCTTTTATGGAATCTCAATT+TGG | - | chr6.3:49777524-49777543 | MS.gene84812:intron | 25.0% |
!! | TTTTAGTCATTCATATACAC+AGG | - | chr6.3:49776319-49776338 | MS.gene84812:intron | 25.0% |
!!! | AATGCTTTCTTTTAGAGATT+CGG | + | chr6.3:49776950-49776969 | None:intergenic | 25.0% |
AACATAGAACTTATTTGACG+AGG | + | chr6.3:49777500-49777519 | None:intergenic | 30.0% | |
AAGAGCTGAACTTTCTTAAA+GGG | - | chr6.3:49777046-49777065 | MS.gene84812:intron | 30.0% | |
AAGTTTGGTAGGAAAGTTAA+AGG | - | chr6.3:49778095-49778114 | MS.gene84812:CDS | 30.0% | |
AATACACGTATTTATTCGAG+AGG | + | chr6.3:49777968-49777987 | None:intergenic | 30.0% | |
ACAACAAGGAAAAATAAGCA+TGG | + | chr6.3:49777918-49777937 | None:intergenic | 30.0% | |
ACACTTCAATAAAACCTTTC+AGG | - | chr6.3:49778233-49778252 | MS.gene84812:CDS | 30.0% | |
ATCATTTGATGAAGAAGGAA+TGG | - | chr6.3:49778209-49778228 | MS.gene84812:CDS | 30.0% | |
ATCCATGATAAACTTTGTTC+TGG | + | chr6.3:49777418-49777437 | None:intergenic | 30.0% | |
ATGATGTTTGATCTATTGTC+GGG | - | chr6.3:49775982-49776001 | MS.gene84812:intron | 30.0% | |
CAAAGCATATCCTAATCAAT+GGG | + | chr6.3:49778573-49778592 | None:intergenic | 30.0% | |
CTTAGAAAACTCATTTGAGA+AGG | - | chr6.3:49775957-49775976 | MS.gene84812:intron | 30.0% | |
GAAAAATAAGCATGGAGATA+AGG | + | chr6.3:49777910-49777929 | None:intergenic | 30.0% | |
GCAAGGATATATCAATATCT+TGG | + | chr6.3:49775807-49775826 | None:intergenic | 30.0% | |
GTAAGAATTCTTGGAAAAGA+TGG | + | chr6.3:49778895-49778914 | None:intergenic | 30.0% | |
TACCAGAACAAAGTTTATCA+TGG | - | chr6.3:49777413-49777432 | MS.gene84812:intron | 30.0% | |
TATGTTAGAATATGCAACCA+AGG | + | chr6.3:49778717-49778736 | None:intergenic | 30.0% | |
TCAACTTACAATTCTCATGT+TGG | + | chr6.3:49776233-49776252 | None:intergenic | 30.0% | |
TGTAGTACATTCTAGATTGA+TGG | + | chr6.3:49777835-49777854 | None:intergenic | 30.0% | |
TTAGTCATTCATATACACAG+GGG | - | chr6.3:49776321-49776340 | MS.gene84812:intron | 30.0% | |
TTCAGTGTAATTACAAGTGT+CGG | + | chr6.3:49778382-49778401 | None:intergenic | 30.0% | |
TTCTATAAGATGTTCATGAC+AGG | + | chr6.3:49776914-49776933 | None:intergenic | 30.0% | |
TTGGTTGCATATTCTAACAT+AGG | - | chr6.3:49778716-49778735 | MS.gene84812:intron | 30.0% | |
TTTAGGCATAATAACTAGGT+TGG | + | chr6.3:49778846-49778865 | None:intergenic | 30.0% | |
! | AGAAGAACGAAAGAATTTTG+AGG | - | chr6.3:49776855-49776874 | MS.gene84812:CDS | 30.0% |
! | AGATAACTATCCCATTGATT+AGG | - | chr6.3:49778560-49778579 | MS.gene84812:CDS | 30.0% |
! | CTAGTTGATATTATGTTGGT+AGG | - | chr6.3:49778289-49778308 | MS.gene84812:CDS | 30.0% |
! | GACTGAGGTTTTCTTTATTA+TGG | - | chr6.3:49776104-49776123 | MS.gene84812:intron | 30.0% |
! | GGGATTTCGAAAAGTATAAT+GGG | - | chr6.3:49776631-49776650 | MS.gene84812:intron | 30.0% |
! | TGAACAAGTGGCATTTTATA+TGG | - | chr6.3:49776543-49776562 | MS.gene84812:intron | 30.0% |
! | TTTTCAGTTCAATTTGGACT+TGG | + | chr6.3:49777599-49777618 | None:intergenic | 30.0% |
!! | ACTTGATAATTTTGTACTGC+TGG | + | chr6.3:49777379-49777398 | None:intergenic | 30.0% |
!! | TGTTTACAAAAGCACTGAAT+CGG | + | chr6.3:49778686-49778705 | None:intergenic | 30.0% |
!!! | TTGTCATTTTATCAGAGAGA+AGG | + | chr6.3:49778766-49778785 | None:intergenic | 30.0% |
!!! | TTTCCTTGTTGTTTTACTCT+TGG | - | chr6.3:49777926-49777945 | MS.gene84812:CDS | 30.0% |
AAAAAAGATACCTGCCTGAA+AGG | + | chr6.3:49778250-49778269 | None:intergenic | 35.0% | |
AAAAGTGAAGTTAAGCGCTA+TGG | + | chr6.3:49778942-49778961 | None:intergenic | 35.0% | |
AAAATTGGTGCATGCAACAA+TGG | - | chr6.3:49778123-49778142 | MS.gene84812:CDS | 35.0% | |
AAAGACCATAATATCCCAGT+TGG | - | chr6.3:49778609-49778628 | MS.gene84812:CDS | 35.0% | |
AAATTGGTGCATGCAACAAT+GGG | - | chr6.3:49778124-49778143 | MS.gene84812:CDS | 35.0% | |
AACAGAGCTTGACAATTTCA+TGG | - | chr6.3:49776023-49776042 | MS.gene84812:intron | 35.0% | |
AACATTGATGTAACTCTCTC+AGG | - | chr6.3:49777702-49777721 | MS.gene84812:CDS | 35.0% | |
AACTGGGATATTATGGTCTT+TGG | + | chr6.3:49778610-49778629 | None:intergenic | 35.0% | |
AATGCAACTAGCTACTGAAA+GGG | - | chr6.3:49777443-49777462 | MS.gene84812:intron | 35.0% | |
ACAGTTAACTGAAACGAACA+TGG | - | chr6.3:49777014-49777033 | MS.gene84812:intron | 35.0% | |
ACTCCAAGAGTAAAACAACA+AGG | + | chr6.3:49777932-49777951 | None:intergenic | 35.0% | |
AGAAAAACTCTACTCACTCA+AGG | - | chr6.3:49775756-49775775 | MS.gene84812:intron | 35.0% | |
ATCATTGCTTGAGTCAATGT+TGG | + | chr6.3:49778178-49778197 | None:intergenic | 35.0% | |
ATTATTATGCATGCTCCAAC+TGG | + | chr6.3:49778627-49778646 | None:intergenic | 35.0% | |
ATTCATATACACAGGGGAAA+TGG | - | chr6.3:49776327-49776346 | MS.gene84812:intron | 35.0% | |
CAGGAGAATAAAAGTTTGGT+AGG | - | chr6.3:49778084-49778103 | MS.gene84812:CDS | 35.0% | |
CCCTAACAGAAATAGATCAT+CGG | - | chr6.3:49775830-49775849 | MS.gene84812:intron | 35.0% | |
GAAAAACTCTACTCACTCAA+GGG | - | chr6.3:49775757-49775776 | MS.gene84812:intron | 35.0% | |
GAAAACGAAAGATCAGAGAA+TGG | - | chr6.3:49776399-49776418 | MS.gene84812:intron | 35.0% | |
GAAGAGCTGAACTTTCTTAA+AGG | - | chr6.3:49777045-49777064 | MS.gene84812:intron | 35.0% | |
GAGAGAGTTACATCAATGTT+AGG | + | chr6.3:49777702-49777721 | None:intergenic | 35.0% | |
GCAAAGCATATCCTAATCAA+TGG | + | chr6.3:49778574-49778593 | None:intergenic | 35.0% | |
GCAGTTACAACAACAGTTAT+TGG | - | chr6.3:49776161-49776180 | MS.gene84812:intron | 35.0% | |
GCTTTGCATGAAAACATCAT+TGG | - | chr6.3:49777347-49777366 | MS.gene84812:intron | 35.0% | |
TAACTGCTTCTTAGACTCTT+CGG | + | chr6.3:49776148-49776167 | None:intergenic | 35.0% | |
TAATGCAACTAGCTACTGAA+AGG | - | chr6.3:49777442-49777461 | MS.gene84812:intron | 35.0% | |
TAGAATATGCAACCAAGGAA+TGG | + | chr6.3:49778712-49778731 | None:intergenic | 35.0% | |
TGTTAATGTTGACGATACTC+AGG | - | chr6.3:49776786-49776805 | MS.gene84812:CDS | 35.0% | |
TTATTATGCATGCTCCAACT+GGG | + | chr6.3:49778626-49778645 | None:intergenic | 35.0% | |
TTCAATAAAACCTTTCAGGC+AGG | - | chr6.3:49778237-49778256 | MS.gene84812:CDS | 35.0% | |
TTCATATACACAGGGGAAAT+GGG | - | chr6.3:49776328-49776347 | MS.gene84812:intron | 35.0% | |
TTCTTGGAAAAGATGGGATT+TGG | + | chr6.3:49778888-49778907 | None:intergenic | 35.0% | |
TTGTAAACAAGTCCATTCCT+TGG | - | chr6.3:49778697-49778716 | MS.gene84812:intron | 35.0% | |
! | AAATGAGTTTTCTAAGTCGC+AGG | + | chr6.3:49775953-49775972 | None:intergenic | 35.0% |
! | AACTGGTTCAGAATAAGCAA+AGG | + | chr6.3:49778028-49778047 | None:intergenic | 35.0% |
! | ACTCATTAGAGCATCTTCAA+TGG | - | chr6.3:49777665-49777684 | MS.gene84812:CDS | 35.0% |
! | ATACACAGCAATTTGGGATA+TGG | - | chr6.3:49777188-49777207 | MS.gene84812:intron | 35.0% |
! | CTCATTAGAGCATCTTCAAT+GGG | - | chr6.3:49777666-49777685 | MS.gene84812:CDS | 35.0% |
! | GGACTTGGTATACAAAGTTA+AGG | + | chr6.3:49777584-49777603 | None:intergenic | 35.0% |
! | GGGGATTTCGAAAAGTATAA+TGG | - | chr6.3:49776630-49776649 | MS.gene84812:intron | 35.0% |
! | GTCGGGCATTTTAAATTTTG+AGG | - | chr6.3:49775999-49776018 | MS.gene84812:intron | 35.0% |
! | TCTAAGGTTTCAAAAGCTGA+AGG | - | chr6.3:49777234-49777253 | MS.gene84812:intron | 35.0% |
! | TTTTGCGATAGTCTAAGCTA+AGG | + | chr6.3:49779189-49779208 | None:intergenic | 35.0% |
!! | CCGATGATCTATTTCTGTTA+GGG | + | chr6.3:49775833-49775852 | None:intergenic | 35.0% |
!! | GTTTACAAAAGCACTGAATC+GGG | + | chr6.3:49778685-49778704 | None:intergenic | 35.0% |
!! | TTCACTTTTGCACTGGATTT+TGG | - | chr6.3:49778953-49778972 | MS.gene84812:CDS | 35.0% |
!!! | TGTTGTTTTACTCTTGGAGT+TGG | - | chr6.3:49777932-49777951 | MS.gene84812:CDS | 35.0% |
AAAGTGTAGACCAAAACACG+TGG | + | chr6.3:49778981-49779000 | None:intergenic | 40.0% | |
AAGAAGCAGCAGAAGTTGTT+TGG | - | chr6.3:49776566-49776585 | MS.gene84812:intron | 40.0% | |
AATTGTGCAGTGAATTCTCG+TGG | + | chr6.3:49779144-49779163 | None:intergenic | 40.0% | |
AGAAGCAGCAGAAGTTGTTT+GGG | - | chr6.3:49776567-49776586 | MS.gene84812:intron | 40.0% | |
AGCATGTTTGGATCAGCTTT+GGG | - | chr6.3:49779061-49779080 | MS.gene84812:CDS | 40.0% | |
AGTACTGCCGAGAAAAAAGT+CGG | - | chr6.3:49777075-49777094 | MS.gene84812:intron | 40.0% | |
ATGCTCCAACTGGGATATTA+TGG | + | chr6.3:49778617-49778636 | None:intergenic | 40.0% | |
ATGTAAGTTCACCAGCTTCT+CGG | + | chr6.3:49775869-49775888 | None:intergenic | 40.0% | |
ATTGATGTAACTCTCTCAGG+AGG | - | chr6.3:49777705-49777724 | MS.gene84812:CDS | 40.0% | |
CAACGTGCATTGTTCAATCA+TGG | - | chr6.3:49778793-49778812 | MS.gene84812:CDS | 40.0% | |
CCAGCTCTTTATGAAGTTCA+AGG | + | chr6.3:49777308-49777327 | None:intergenic | 40.0% | |
CCTTGAACTTCATAAAGAGC+TGG | - | chr6.3:49777305-49777324 | MS.gene84812:intron | 40.0% | |
CGATACTCAGGAAAATACTG+AGG | - | chr6.3:49776798-49776817 | MS.gene84812:CDS | 40.0% | |
CGATAGTCTAAGCTAAGGTT+TGG | + | chr6.3:49779184-49779203 | None:intergenic | 40.0% | |
GCGACTTCATAAAAGTCTTG+TGG | - | chr6.3:49776203-49776222 | MS.gene84812:intron | 40.0% | |
GTAACTGAGTTCAACCTCAA+CGG | - | chr6.3:49776664-49776683 | MS.gene84812:intron | 40.0% | |
GTTGATTGTCCTGTATGAAG+AGG | + | chr6.3:49778480-49778499 | None:intergenic | 40.0% | |
TAGCATGTTTGGATCAGCTT+TGG | - | chr6.3:49779060-49779079 | MS.gene84812:CDS | 40.0% | |
TATCCAACTACAGAATGCGA+AGG | - | chr6.3:49777128-49777147 | MS.gene84812:intron | 40.0% | |
TCAGGAAAATACTGAGGTGT+TGG | - | chr6.3:49776804-49776823 | MS.gene84812:CDS | 40.0% | |
TCATATACACAGGGGAAATG+GGG | - | chr6.3:49776329-49776348 | MS.gene84812:intron | 40.0% | |
TGAGGTTGAACTCAGTTACT+TGG | + | chr6.3:49776663-49776682 | None:intergenic | 40.0% | |
TGTCCTGTATGAAGAGGATA+CGG | + | chr6.3:49778474-49778493 | None:intergenic | 40.0% | |
TTGATGTAACTCTCTCAGGA+GGG | - | chr6.3:49777706-49777725 | MS.gene84812:CDS | 40.0% | |
TTTACAGCTGCTATGAAGCA+CGG | - | chr6.3:49778317-49778336 | MS.gene84812:CDS | 40.0% | |
! | AAGGGAGCGCATTAATAAAC+AGG | - | chr6.3:49777461-49777480 | MS.gene84812:intron | 40.0% |
! | AATGCTACCGAGGTGTTAAT+GGG | - | chr6.3:49776610-49776629 | MS.gene84812:intron | 40.0% |
! | TATTTCTGTTAGGGCTTGCA+AGG | + | chr6.3:49775824-49775843 | None:intergenic | 40.0% |
!! | ATACTGAGGTGTTGGATTTG+AGG | - | chr6.3:49776812-49776831 | MS.gene84812:CDS | 40.0% |
!! | ATGCTGCTTTAGAGAAGAAC+GGG | - | chr6.3:49776755-49776774 | MS.gene84812:CDS | 40.0% |
!! | GATGCTGCTTTAGAGAAGAA+CGG | - | chr6.3:49776754-49776773 | MS.gene84812:CDS | 40.0% |
!! | GCAGCTAGATGCTTTAAAAC+AGG | - | chr6.3:49778065-49778084 | MS.gene84812:CDS | 40.0% |
!! | GCCGATGATCTATTTCTGTT+AGG | + | chr6.3:49775834-49775853 | None:intergenic | 40.0% |
!! | GCTTAACTTCACTTTTGCAC+TGG | - | chr6.3:49778946-49778965 | MS.gene84812:CDS | 40.0% |
!! | TACTGAGGTGTTGGATTTGA+GGG | - | chr6.3:49776813-49776832 | MS.gene84812:CDS | 40.0% |
!!! | AAGCGAACCGACTTTTTTCT+CGG | + | chr6.3:49777085-49777104 | None:intergenic | 40.0% |
!!! | GTTTTAAAGCATCTAGCTGC+AGG | + | chr6.3:49778065-49778084 | None:intergenic | 40.0% |
AGGAAGAACGTAGTGGTAAC+TGG | + | chr6.3:49778045-49778064 | None:intergenic | 45.0% | |
ATGCCTTCGCATTCTGTAGT+TGG | + | chr6.3:49777134-49777153 | None:intergenic | 45.0% | |
CGAAATCCCCATTAACACCT+CGG | + | chr6.3:49776620-49776639 | None:intergenic | 45.0% | |
GAAGCAGCAGAAGTTGTTTG+GGG | - | chr6.3:49776568-49776587 | MS.gene84812:intron | 45.0% | |
TATGAAGAGGATACGGACAC+CGG | + | chr6.3:49778467-49778486 | None:intergenic | 45.0% | |
TATGAAGCACGGACACTTCT+GGG | - | chr6.3:49778328-49778347 | MS.gene84812:CDS | 45.0% | |
TGATGTAACTCTCTCAGGAG+GGG | - | chr6.3:49777707-49777726 | MS.gene84812:CDS | 45.0% | |
TGTCCGTATCCTCTTCATAC+AGG | - | chr6.3:49778468-49778487 | MS.gene84812:CDS | 45.0% | |
TTCGCTTGAGAAGCAACTGA+GGG | - | chr6.3:49777098-49777117 | MS.gene84812:intron | 45.0% | |
! | ATGCCACTTGTTCAGTGTAG+CGG | + | chr6.3:49776537-49776556 | None:intergenic | 45.0% |
! | ATGCTACCGAGGTGTTAATG+GGG | - | chr6.3:49776611-49776630 | MS.gene84812:intron | 45.0% |
! | CAATGCTACCGAGGTGTTAA+TGG | - | chr6.3:49776609-49776628 | MS.gene84812:intron | 45.0% |
! | GGTGTTGGATTTGAGGGAAA+AGG | - | chr6.3:49776819-49776838 | MS.gene84812:CDS | 45.0% |
!! | GATTTTGGCACCACGTGTTT+TGG | - | chr6.3:49778968-49778987 | MS.gene84812:CDS | 45.0% |
!! | TACAAAAGCACTGAATCGGG+TGG | + | chr6.3:49778682-49778701 | None:intergenic | 45.0% |
ACTCCGCTACACTGAACAAG+TGG | - | chr6.3:49776531-49776550 | MS.gene84812:intron | 50.0% | |
AGCCTATTCTTCCGAGAAGC+TGG | - | chr6.3:49775855-49775874 | MS.gene84812:intron | 50.0% | |
ATACACAGGGGAAATGGGGA+AGG | - | chr6.3:49776333-49776352 | MS.gene84812:intron | 50.0% | |
CACCAGCTTCTCGGAAGAAT+AGG | + | chr6.3:49775860-49775879 | None:intergenic | 50.0% | |
CTATGAAGCACGGACACTTC+TGG | - | chr6.3:49778327-49778346 | MS.gene84812:CDS | 50.0% | |
CTCGCTGCATATAACCGTTG+AGG | + | chr6.3:49776681-49776700 | None:intergenic | 50.0% | |
GTCGTGCAGACATTTGACTG+AGG | - | chr6.3:49776089-49776108 | MS.gene84812:intron | 50.0% | |
GTTCGCTTGAGAAGCAACTG+AGG | - | chr6.3:49777097-49777116 | MS.gene84812:intron | 50.0% | |
TAGCTGCAGGAAGAACGTAG+TGG | + | chr6.3:49778052-49778071 | None:intergenic | 50.0% | |
TGAAGCAGACAATGCTACCG+AGG | - | chr6.3:49776600-49776619 | MS.gene84812:intron | 50.0% | |
!! | AGCTGAGAGTGCTGAAGCAA+AGG | - | chr6.3:49776987-49777006 | MS.gene84812:intron | 50.0% |
GCTTGAGAAGTCGCTCGCAA+GGG | - | chr6.3:49776450-49776469 | MS.gene84812:intron | 55.0% | |
TGCTTGAGAAGTCGCTCGCA+AGG | - | chr6.3:49776449-49776468 | MS.gene84812:intron | 55.0% | |
! | CTTCTGGGTTAGACGTGTCG+CGG | - | chr6.3:49778343-49778362 | MS.gene84812:CDS | 55.0% |
!! | GCGAAGGCATCTTCTGAAGC+AGG | - | chr6.3:49777144-49777163 | MS.gene84812:intron | 55.0% |
GTCCATGTCCGTGTCGTGTC+CGG | - | chr6.3:49778445-49778464 | MS.gene84812:CDS | 60.0% | |
TACGGACACCGGACACGACA+CGG | + | chr6.3:49778456-49778475 | None:intergenic | 60.0% | |
CACCGGACACGACACGGACA+TGG | + | chr6.3:49778450-49778469 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 49775742 | 49779269 | 49775742 | ID=MS.gene84812 |
chr6.3 | mRNA | 49775742 | 49779269 | 49775742 | ID=MS.gene84812.t1;Parent=MS.gene84812 |
chr6.3 | exon | 49778768 | 49779269 | 49778768 | ID=MS.gene84812.t1.exon1;Parent=MS.gene84812.t1 |
chr6.3 | CDS | 49778768 | 49779269 | 49778768 | ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1 |
chr6.3 | exon | 49777529 | 49778670 | 49777529 | ID=MS.gene84812.t1.exon2;Parent=MS.gene84812.t1 |
chr6.3 | CDS | 49777529 | 49778670 | 49777529 | ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1 |
chr6.3 | exon | 49776753 | 49776942 | 49776753 | ID=MS.gene84812.t1.exon3;Parent=MS.gene84812.t1 |
chr6.3 | CDS | 49776753 | 49776942 | 49776753 | ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1 |
chr6.3 | exon | 49775742 | 49775749 | 49775742 | ID=MS.gene84812.t1.exon4;Parent=MS.gene84812.t1 |
chr6.3 | CDS | 49775742 | 49775749 | 49775742 | ID=cds.MS.gene84812.t1;Parent=MS.gene84812.t1 |
Gene Sequence |
Protein sequence |