AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93457


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93457.t1 MTR_3g086660 39.832 595 322 11 1 565 1 589 3.02e-106 333
MS.gene93457.t1 MTR_7g017690 37.919 567 312 13 16 570 10 548 1.38e-90 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93457.t1 AT1G68910 47.445 548 263 8 28 573 24 548 4.51e-142 425
MS.gene93457.t1 AT1G68910 47.445 548 263 8 28 573 24 548 4.51e-142 425
MS.gene93457.t1 AT1G68910 47.445 548 263 8 28 573 24 548 3.28e-141 424
MS.gene93457.t1 AT5G11390 38.390 646 336 12 15 616 25 652 6.57e-103 328

Find 84 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTACAACAACAGTTAT+TGG 0.208222 6.4:-30089040 MS.gene93457:CDS
GAAGAGCTGAACTTTCTTAA+AGG 0.224825 6.4:-30088155 MS.gene93457:CDS
CAATGCTACCGAGGTGTTAA+TGG 0.262222 6.4:-30088591 MS.gene93457:CDS
AACAAAGTTTATCATGGATT+TGG 0.269879 6.4:-30087781 MS.gene93457:CDS
ATATGTTATACACAGCAATT+TGG 0.281088 6.4:-30088019 MS.gene93457:CDS
AAGTTTGGTAGGAAAGTTAA+AGG 0.285452 6.4:-30085200 MS.gene93457:CDS
AATTGAAGAGCTAAAATCTA+AGG 0.296015 6.4:-30087982 MS.gene93457:CDS
GGCAATGATGTTTGATCTAT+TGG 0.304238 6.4:-30089223 MS.gene93457:CDS
ATACACAGCAATTTGGGATA+TGG 0.307575 6.4:-30088012 MS.gene93457:CDS
GGGGATTTCGAAAAGTATAA+TGG 0.309555 6.4:-30088570 MS.gene93457:CDS
AAGAAGCAGCAGAAGTTGTT+TGG 0.325223 6.4:-30088634 MS.gene93457:CDS
ATCCATGATAAACTTTGTTC+TGG 0.336896 6.4:+30087785 None:intergenic
TACTGAGGTGTTGGATTTGA+GGG 0.336994 6.4:-30088387 MS.gene93457:CDS
ATTCATATACACAGGGGAAA+TGG 0.346219 6.4:-30088873 MS.gene93457:intron
CCGATGATCTATTTCTGTTA+AGG 0.349046 6.4:+30089371 None:intergenic
AAAACAGGAAAATAAAAGTT+TGG 0.349494 6.4:-30085215 MS.gene93457:CDS
AGAAGCAGCAGAAGTTGTTT+GGG 0.356426 6.4:-30088633 MS.gene93457:CDS
CCAACTCTTTATGAAGTTCA+AGG 0.367171 6.4:+30087895 None:intergenic
TTCATATACACAGGGGAAAT+GGG 0.379165 6.4:-30088872 MS.gene93457:intron
AATGCTACCGAGGTGTTAAT+GGG 0.379167 6.4:-30088590 MS.gene93457:CDS
AAGAGCTGAACTTTCTTAAA+GGG 0.392409 6.4:-30088154 MS.gene93457:CDS
TATGTTATACACAGCAATTT+GGG 0.393418 6.4:-30088018 MS.gene93457:CDS
ATGCCTTCGCATTCTGTAGT+TGG 0.418735 6.4:+30088069 None:intergenic
GCTTTGCATGAAAACGTCAT+TGG 0.426440 6.4:-30087853 MS.gene93457:CDS
GGGATTTCGAAAAGTATAAT+GGG 0.426529 6.4:-30088569 MS.gene93457:CDS
TACCAGAACAAAGTTTATCA+TGG 0.428221 6.4:-30087787 MS.gene93457:CDS
AAGTTAAAGGAGACTAAAAT+TGG 0.430349 6.4:-30085187 MS.gene93457:CDS
TGAGGTTGAACTCAGTTACT+TGG 0.431369 6.4:+30088540 None:intergenic
AAGGGAGCGCATTAATAAAC+AGG 0.433397 6.4:-30087739 MS.gene93457:intron
ATGCTGCTTTAGAGAAGAAC+GGG 0.446606 6.4:-30088445 MS.gene93457:CDS
ATACTGAGGTGTTGGATTTG+AGG 0.449553 6.4:-30088388 MS.gene93457:CDS
ACACTTCAATAAAACCTTCC+AGG 0.450184 6.4:-30085062 MS.gene93457:CDS
AACAGAGCTTGACAATTTCA+TGG 0.456939 6.4:-30089178 MS.gene93457:CDS
TGTTCTGTATATTTATCTAC+TGG 0.459847 6.4:-30089313 MS.gene93457:CDS
CACCAGCTTCTCCGAAGAAT+AGG 0.461721 6.4:+30089344 None:intergenic
GCAGCTAGATGCTTTAAAAC+AGG 0.463620 6.4:-30085230 MS.gene93457:intron
ACAAAATCATTTGATGAAGA+AGG 0.480014 6.4:-30085091 MS.gene93457:CDS
TATTTCTGTTAAGGCTTGCA+AGG 0.481548 6.4:+30089380 None:intergenic
ATCATTTGATGAAGAAGGAA+TGG 0.487382 6.4:-30085086 MS.gene93457:CDS
AGCCTATTCTTCGGAGAAGC+TGG 0.487690 6.4:-30089346 MS.gene93457:CDS
TCAACTTACAATTCTCATGT+TGG 0.490472 6.4:+30088971 None:intergenic
TCAGGAAAATACTGAGGTGT+TGG 0.490567 6.4:-30088396 MS.gene93457:CDS
ATCATTGCTTGAGTCAATGT+TGG 0.490619 6.4:+30085120 None:intergenic
TTCTATAAGATGTTCATGAC+AGG 0.491221 6.4:+30088289 None:intergenic
CAGGAAAATAAAAGTTTGGT+AGG 0.501234 6.4:-30085211 MS.gene93457:CDS
TCATCGGCTAGCCTATTCTT+CGG 0.503341 6.4:-30089355 MS.gene93457:CDS
AAAATTGGTGCATGCAACAA+TGG 0.505778 6.4:-30085172 MS.gene93457:CDS
TTCAATAAAACCTTCCAGGC+AGG 0.520406 6.4:-30085058 MS.gene93457:intron
CTCGCTGCATATAACCGTTG+AGG 0.524764 6.4:+30088522 None:intergenic
AAATTGGTGCATGCAACAAT+GGG 0.526271 6.4:-30085171 MS.gene93457:CDS
TGCTTGAGAAGTCGCTCGCA+AGG 0.526338 6.4:-30088751 MS.gene93457:CDS
GGTGTTGGATTTGAGGGAAA+AGG 0.526687 6.4:-30088381 MS.gene93457:CDS
GCGAAGGCATCTTCTGAAGC+AGG 0.527456 6.4:-30088056 MS.gene93457:CDS
GCAAGGATATATCAAGATCA+TGG 0.535800 6.4:+30089397 None:intergenic
CCTTGAACTTCATAAAGAGT+TGG 0.539149 6.4:-30087895 MS.gene93457:CDS
TAATAGCTTCTTAGACTCAT+CGG 0.542396 6.4:+30089056 None:intergenic
AGCTGAGAGTGCTGAAGCAA+AGG 0.555426 6.4:-30088213 MS.gene93457:CDS
CTTAGAAAACTCATTTCAGA+AGG 0.556238 6.4:-30089244 MS.gene93457:CDS
TAATGCAACTAGCCACTGAA+AGG 0.558691 6.4:-30087758 MS.gene93457:CDS
TCTTAATGTTGACGATACTC+AGG 0.562909 6.4:-30088414 MS.gene93457:CDS
ATGATGTTTGATCTATTGGC+TGG 0.564476 6.4:-30089219 MS.gene93457:CDS
AATGCAACTAGCCACTGAAA+GGG 0.573953 6.4:-30087757 MS.gene93457:CDS
GAAAACGAAAGATCAGAGAA+TGG 0.579935 6.4:-30088801 MS.gene93457:CDS
ATTAATGCGCTCCCTTTCAG+TGG 0.581326 6.4:+30087746 None:intergenic
CGAAATCCCCATTAACACCT+CGG 0.586371 6.4:+30088583 None:intergenic
ATACACAGGGGAAATGGGGA+AGG 0.589178 6.4:-30088867 MS.gene93457:intron
ACTCCGCTACACTGAACAAG+TGG 0.600856 6.4:-30088669 MS.gene93457:CDS
GAAGCAGCAGAAGTTGTTTG+GGG 0.601416 6.4:-30088632 MS.gene93457:CDS
ACAGTTAACTGAAACGAACA+TGG 0.602578 6.4:-30088186 MS.gene93457:CDS
TCTAAGGTTTCAAAAGCTGA+AGG 0.603452 6.4:-30087966 MS.gene93457:CDS
GCAGCTTCAGAAAAGTCTTG+TGG 0.605005 6.4:-30088998 MS.gene93457:CDS
TCATATACACAGGGGAAATG+GGG 0.609571 6.4:-30088871 MS.gene93457:intron
GATGCTGCTTTAGAGAAGAA+CGG 0.611153 6.4:-30088446 MS.gene93457:CDS
ATGCCACTTGTTCAGTGTAG+CGG 0.624346 6.4:+30088666 None:intergenic
GTAACTGAGTTCAACCTCAA+CGG 0.629441 6.4:-30088536 MS.gene93457:CDS
CCTTAACAGAAATAGATCAT+CGG 0.629560 6.4:-30089371 MS.gene93457:CDS
GTTCGCTTGAGAAGCAACTG+AGG 0.632474 6.4:-30088103 MS.gene93457:CDS
TTCGCTTGAGAAGCAACTGA+GGG 0.639113 6.4:-30088102 MS.gene93457:CDS
GCTTGAGAAGTCGCTCGCAA+GGG 0.645249 6.4:-30088750 MS.gene93457:CDS
TATCCAACTACAGAATGCGA+AGG 0.657458 6.4:-30088072 MS.gene93457:CDS
ATGCTACCGAGGTGTTAATG+GGG 0.669958 6.4:-30088589 MS.gene93457:CDS
TGAAGCAGACAATGCTACCG+AGG 0.684617 6.4:-30088600 MS.gene93457:CDS
GTCGTGCAGACATTTGACTG+AGG 0.706871 6.4:-30089112 MS.gene93457:CDS
CGATACTCAGGAAAATACTG+AGG 0.718119 6.4:-30088402 MS.gene93457:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATTAACACATGTA+GGG - chr6.4:30088133-30088152 MS.gene93457:CDS 15.0%
!! TAAAACATTTCATAAGATTT+AGG - chr6.4:30087258-30087277 MS.gene93457:intron 15.0%
!! TATATAAAATTAACACATGT+AGG - chr6.4:30088132-30088151 MS.gene93457:CDS 15.0%
!!! ATACTTTTCTTAAAAAATCT+AGG + chr6.4:30089297-30089316 None:intergenic 15.0%
!!! TTCTATGTTTTTATCTTTTA+TGG - chr6.4:30086467-30086486 MS.gene93457:intron 15.0%
!!! TTTGAATTTTGATATTATGT+TGG - chr6.4:30087173-30087192 MS.gene93457:intron 15.0%
!! AAAAAGCTCTATTAAAATTC+GGG + chr6.4:30087918-30087937 None:intergenic 20.0%
!! AAAACAGGAAAATAAAAGTT+TGG - chr6.4:30088941-30088960 MS.gene93457:intron 20.0%
!! AATTGAACTGAAAATATTCA+AGG - chr6.4:30086561-30086580 MS.gene93457:intron 20.0%
!! GAAAAAGCTCTATTAAAATT+CGG + chr6.4:30087919-30087938 None:intergenic 20.0%
!! GATTATCTAATATAAAGCAA+CGG + chr6.4:30087060-30087079 None:intergenic 20.0%
!! TGAAGAGTTTATATTCTTTA+TGG + chr6.4:30087785-30087804 None:intergenic 20.0%
!!! AATTATCAGTTCTTTTCTTT+AGG - chr6.4:30087121-30087140 MS.gene93457:intron 20.0%
!!! AATTTTAATCGAACAACTTA+AGG - chr6.4:30085682-30085701 MS.gene93457:intron 20.0%
!!! ATTTTCACAGTTTCTTAATA+TGG + chr6.4:30087505-30087524 None:intergenic 20.0%
!!! CTTGGTTTTAAAAAAAACAA+GGG - chr6.4:30086888-30086907 MS.gene93457:intron 20.0%
!!! GGATTTAATGTTTTGAATTT+TGG - chr6.4:30087142-30087161 MS.gene93457:intron 20.0%
!!! TACTTCGTTTTAGAATTTAT+TGG - chr6.4:30089443-30089462 MS.gene93457:CDS 20.0%
!!! TAGGAATTTTTTTTGTTATG+CGG + chr6.4:30088008-30088027 None:intergenic 20.0%
!!! TGAATATTTTCAGTTCAATT+TGG + chr6.4:30086561-30086580 None:intergenic 20.0%
!!! TTTTGAATTTGTTTTACTCT+TGG - chr6.4:30088790-30088809 MS.gene93457:CDS 20.0%
!!! TTTTTATGTGTAAGAATTCT+TGG + chr6.4:30089338-30089357 None:intergenic 20.0%
! AACAAAGTTTATCATGGATT+TGG - chr6.4:30086375-30086394 MS.gene93457:intron 25.0%
! AACATTTCATAAGATTTAGG+TGG - chr6.4:30087261-30087280 MS.gene93457:intron 25.0%
! AAGTTAAAGGAGACTAAAAT+TGG - chr6.4:30088969-30088988 MS.gene93457:intron 25.0%
! AATTGAAGAGCTAAAATCTA+AGG - chr6.4:30086174-30086193 MS.gene93457:intron 25.0%
! ACAAAATCATTTGATGAAGA+AGG - chr6.4:30089065-30089084 MS.gene93457:CDS 25.0%
! ATATGTTATACACAGCAATT+TGG - chr6.4:30086137-30086156 MS.gene93457:intron 25.0%
! ATTGTTGAATCATGGAAAAT+TGG - chr6.4:30089235-30089254 MS.gene93457:CDS 25.0%
! CTTGAGAAGAGTTTATAAAA+AGG + chr6.4:30088702-30088721 None:intergenic 25.0%
! TAAGAATTCTTGGAAAAGAT+GGG + chr6.4:30089328-30089347 None:intergenic 25.0%
! TATGTTATACACAGCAATTT+GGG - chr6.4:30086138-30086157 MS.gene93457:intron 25.0%
! TCAATCATAGTAGTTAATAG+CGG + chr6.4:30087480-30087499 None:intergenic 25.0%
! TCCTAAAAGTTATGAAATAG+CGG - chr6.4:30087393-30087412 MS.gene93457:intron 25.0%
! TGTTCTGTATATTTATCTAC+TGG - chr6.4:30084843-30084862 MS.gene93457:intron 25.0%
! TTGCATGAAATGATCATTAA+AGG + chr6.4:30086507-30086526 None:intergenic 25.0%
! TTTAGTCATTCATATACACA+GGG - chr6.4:30085276-30085295 MS.gene93457:intron 25.0%
! TTTCACGTAAAATGAAATAG+CGG + chr6.4:30086855-30086874 None:intergenic 25.0%
!! TTATCATTTTATCAGAGAGA+AGG + chr6.4:30089200-30089219 None:intergenic 25.0%
!! TTTTAGTCATTCATATACAC+AGG - chr6.4:30085275-30085294 MS.gene93457:intron 25.0%
!!! AATGCTTTCTTTTAGAGATT+CGG + chr6.4:30085906-30085925 None:intergenic 25.0%
!!! ACTTGATAATTTTGTATTGC+TGG + chr6.4:30086335-30086354 None:intergenic 25.0%
!!! AGGAATTTTTTTTGTTATGC+GGG + chr6.4:30088007-30088026 None:intergenic 25.0%
!!! CCTTGGTTTTAAAAAAAACA+AGG - chr6.4:30086887-30086906 MS.gene93457:intron 25.0%
!!! CCTTGTTTTTTTTAAAACCA+AGG + chr6.4:30086890-30086909 None:intergenic 25.0%
!!! TTTCGTAATGTTCTGAATTT+TGG - chr6.4:30087208-30087227 MS.gene93457:intron 25.0%
AAATTCGGGCTCAATATTTA+AGG + chr6.4:30087904-30087923 None:intergenic 30.0%
AACAAAAAGCTATCAGATAG+TGG - chr6.4:30087725-30087744 MS.gene93457:intron 30.0%
AACATAGAACTTATTTGACG+AGG + chr6.4:30086456-30086475 None:intergenic 30.0%
AAGAGCTGAACTTTCTTAAA+GGG - chr6.4:30086002-30086021 MS.gene93457:intron 30.0%
AAGTTTGGTAGGAAAGTTAA+AGG - chr6.4:30088956-30088975 MS.gene93457:intron 30.0%
ACAAAAAGCTATCAGATAGT+GGG - chr6.4:30087726-30087745 MS.gene93457:intron 30.0%
ACAATACACATTTATTCGAG+AGG + chr6.4:30088832-30088851 None:intergenic 30.0%
AGAGAGAAACTGAAGTTATT+AGG + chr6.4:30086937-30086956 None:intergenic 30.0%
ATCATTTGATGAAGAAGGAA+TGG - chr6.4:30089070-30089089 MS.gene93457:CDS 30.0%
ATCCATGATAAACTTTGTTC+TGG + chr6.4:30086374-30086393 None:intergenic 30.0%
ATTCCAACATAACATAGCAT+TGG + chr6.4:30087104-30087123 None:intergenic 30.0%
CAGGAAAATAAAAGTTTGGT+AGG - chr6.4:30088945-30088964 MS.gene93457:intron 30.0%
CCTTAACAGAAATAGATCAT+CGG - chr6.4:30084785-30084804 MS.gene93457:intron 30.0%
CTATAATTAATCGGGCTAAA+CGG + chr6.4:30087873-30087892 None:intergenic 30.0%
CTTAGAAAACTCATTTCAGA+AGG - chr6.4:30084912-30084931 MS.gene93457:intron 30.0%
CTTCCTTCTTTCATTCTTTA+CGG - chr6.4:30086955-30086974 MS.gene93457:intron 30.0%
GAGAGAAACTGAAGTTATTA+GGG + chr6.4:30086936-30086955 None:intergenic 30.0%
GCTATTACAACAACAGTTAT+TGG - chr6.4:30085116-30085135 MS.gene93457:CDS 30.0%
GTAAGAATTCTTGGAAAAGA+TGG + chr6.4:30089329-30089348 None:intergenic 30.0%
GTTTAGCCCGATTAATTATA+GGG - chr6.4:30087872-30087891 MS.gene93457:CDS 30.0%
TAATAGCTTCTTAGACTCAT+CGG + chr6.4:30085103-30085122 None:intergenic 30.0%
TACCAGAACAAAGTTTATCA+TGG - chr6.4:30086369-30086388 MS.gene93457:intron 30.0%
TATAATTAATCGGGCTAAAC+GGG + chr6.4:30087872-30087891 None:intergenic 30.0%
TATCTAATATAAAGCAACGG+CGG + chr6.4:30087057-30087076 None:intergenic 30.0%
TATGTTAGAATATGCAACGA+AGG + chr6.4:30089151-30089170 None:intergenic 30.0%
TCAACTTACAATTCTCATGT+TGG + chr6.4:30085188-30085207 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG - chr6.4:30086870-30086889 MS.gene93457:intron 30.0%
TGTAGTACATTCTAGATTGA+TGG + chr6.4:30087593-30087612 None:intergenic 30.0%
TTAGTCATTCATATACACAG+GGG - chr6.4:30085277-30085296 MS.gene93457:intron 30.0%
TTCGTTGCATATTCTAACAT+AGG - chr6.4:30089150-30089169 MS.gene93457:CDS 30.0%
TTCTATAAGATGTTCATGAC+AGG + chr6.4:30085870-30085889 None:intergenic 30.0%
TTTCCAATGCTATGTTATGT+TGG - chr6.4:30087098-30087117 MS.gene93457:intron 30.0%
! AGAAGAACGAAAGAATTTTG+AGG - chr6.4:30085811-30085830 MS.gene93457:intron 30.0%
! GACTGAGGTTTTCTTTATAA+TGG - chr6.4:30085059-30085078 MS.gene93457:CDS 30.0%
! GGGATTTCGAAAAGTATAAT+GGG - chr6.4:30085587-30085606 MS.gene93457:intron 30.0%
! TCTTTTATGGAATCTCAGTT+TGG - chr6.4:30086480-30086499 MS.gene93457:intron 30.0%
! TGAACAAGTGGCATTTTATA+TGG - chr6.4:30085499-30085518 MS.gene93457:intron 30.0%
! TTTTCAGTTCAATTTGGACT+TGG + chr6.4:30086555-30086574 None:intergenic 30.0%
!! ACCGCTATTTCATAACTTTT+AGG + chr6.4:30087397-30087416 None:intergenic 30.0%
!!! ATTTGTTTTACTCTTGGAGT+TGG - chr6.4:30088796-30088815 MS.gene93457:CDS 30.0%
AAAAGTGAAGTTAAGCGCTA+TGG + chr6.4:30089376-30089395 None:intergenic 35.0%
AAAATTAACACATGTAGGGC+CGG - chr6.4:30088137-30088156 MS.gene93457:CDS 35.0%
AAAATTGGTGCATGCAACAA+TGG - chr6.4:30088984-30089003 MS.gene93457:CDS 35.0%
AAAGTGTAGACCAAAAAACG+CGG + chr6.4:30089415-30089434 None:intergenic 35.0%
AAATTGGTGCATGCAACAAT+GGG - chr6.4:30088985-30089004 MS.gene93457:CDS 35.0%
AACAGAGCTTGACAATTTCA+TGG - chr6.4:30084978-30084997 MS.gene93457:intron 35.0%
AACATTGATGTAACTCTCTC+AGG - chr6.4:30086658-30086677 MS.gene93457:intron 35.0%
AACGCATTTCTCGCAAAAAA+CGG - chr6.4:30087001-30087020 MS.gene93457:intron 35.0%
ACACTTCAATAAAACCTTCC+AGG - chr6.4:30089094-30089113 MS.gene93457:CDS 35.0%
ACAGTTAACTGAAACGAACA+TGG - chr6.4:30085970-30085989 MS.gene93457:intron 35.0%
AGAAAAACTCTACTCACTCA+AGG - chr6.4:30084711-30084730 MS.gene93457:intron 35.0%
AGAATCTTATCTATCCGATG+TGG - chr6.4:30088288-30088307 MS.gene93457:CDS 35.0%
ATCATTGCTTGAGTCAATGT+TGG + chr6.4:30089039-30089058 None:intergenic 35.0%
ATGATGTTTGATCTATTGGC+TGG - chr6.4:30084937-30084956 MS.gene93457:intron 35.0%
ATTCATATACACAGGGGAAA+TGG - chr6.4:30085283-30085302 MS.gene93457:intron 35.0%
CCAACTCTTTATGAAGTTCA+AGG + chr6.4:30086264-30086283 None:intergenic 35.0%
CCTTGAACTTCATAAAGAGT+TGG - chr6.4:30086261-30086280 MS.gene93457:intron 35.0%
CGTTTAGCCCGATTAATTAT+AGG - chr6.4:30087871-30087890 MS.gene93457:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6.4:30088655-30088674 MS.gene93457:CDS 35.0%
GAAAAACTCTACTCACTCAA+GGG - chr6.4:30084712-30084731 MS.gene93457:intron 35.0%
GAAAACGAAAGATCAGAGAA+TGG - chr6.4:30085355-30085374 MS.gene93457:intron 35.0%
GAAGAGCTGAACTTTCTTAA+AGG - chr6.4:30086001-30086020 MS.gene93457:intron 35.0%
GAATCTTATCTATCCGATGT+GGG - chr6.4:30088289-30088308 MS.gene93457:CDS 35.0%
GACCACTAACAAAAACTTCT+AGG - chr6.4:30088764-30088783 MS.gene93457:CDS 35.0%
GAGAGAGTTACATCAATGTT+AGG + chr6.4:30086658-30086677 None:intergenic 35.0%
GATACCAGAGTAGTTAATAG+CGG - chr6.4:30086696-30086715 MS.gene93457:intron 35.0%
GCAAGGATATATCAAGATCA+TGG + chr6.4:30084762-30084781 None:intergenic 35.0%
GGCAATGATGTTTGATCTAT+TGG - chr6.4:30084933-30084952 MS.gene93457:intron 35.0%
TATCAGCATTGTGCAATTAG+TGG - chr6.4:30087691-30087710 MS.gene93457:intron 35.0%
TCTAGGCATGATAACTATGT+AGG + chr6.4:30089280-30089299 None:intergenic 35.0%
TCTTAATGTTGACGATACTC+AGG - chr6.4:30085742-30085761 MS.gene93457:intron 35.0%
TGATAGCATGTCACGAAAAT+CGG - chr6.4:30088629-30088648 MS.gene93457:CDS 35.0%
TTCATATACACAGGGGAAAT+GGG - chr6.4:30085284-30085303 MS.gene93457:intron 35.0%
TTCTTGGAAAAGATGGGATT+TGG + chr6.4:30089322-30089341 None:intergenic 35.0%
! AAATGAGTTTTCTAAGTCGC+GGG + chr6.4:30084908-30084927 None:intergenic 35.0%
! AACTGGTTCAGAATAAGCAA+AGG + chr6.4:30088889-30088908 None:intergenic 35.0%
! ACTCATTAGAGCATCTTCAA+TGG - chr6.4:30086621-30086640 MS.gene93457:intron 35.0%
! ATACACAGCAATTTGGGATA+TGG - chr6.4:30086144-30086163 MS.gene93457:intron 35.0%
! CTCATTAGAGCATCTTCAAT+GGG - chr6.4:30086622-30086641 MS.gene93457:intron 35.0%
! CTTCTCAAGAATCTGAGTTT+TGG + chr6.4:30088506-30088525 None:intergenic 35.0%
! GAAATGAGTTTTCTAAGTCG+CGG + chr6.4:30084909-30084928 None:intergenic 35.0%
! GGACTTGGTATACAAAGTTA+AGG + chr6.4:30086540-30086559 None:intergenic 35.0%
! GGGGATTTCGAAAAGTATAA+TGG - chr6.4:30085586-30085605 MS.gene93457:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr6.4:30087432-30087451 MS.gene93457:intron 35.0%
! TATTTCTGTTAAGGCTTGCA+AGG + chr6.4:30084779-30084798 None:intergenic 35.0%
! TCTAAGGTTTCAAAAGCTGA+AGG - chr6.4:30086190-30086209 MS.gene93457:intron 35.0%
! TGCCTAGAAGTTTTTGTTAG+TGG + chr6.4:30088769-30088788 None:intergenic 35.0%
! TTTTGCGAGAAATGCGTTTT+GGG + chr6.4:30086999-30087018 None:intergenic 35.0%
! TTTTGTTAGTGGTCAACACT+CGG + chr6.4:30088758-30088777 None:intergenic 35.0%
! TTTTTGCGAGAAATGCGTTT+TGG + chr6.4:30087000-30087019 None:intergenic 35.0%
!! CCGATGATCTATTTCTGTTA+AGG + chr6.4:30084788-30084807 None:intergenic 35.0%
!! CGTAATGTTCTGAATTTTGG+TGG - chr6.4:30087211-30087230 MS.gene93457:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr6.4:30087473-30087492 None:intergenic 35.0%
!!! GCAGGTATCTTTTTTGACAT+AGG - chr6.4:30089116-30089135 MS.gene93457:CDS 35.0%
!!! TTTAATAGAGCTTTTTCGCC+CGG - chr6.4:30087922-30087941 MS.gene93457:CDS 35.0%
!!! TTTTTTGTTATGCGGGCTAA+CGG + chr6.4:30088000-30088019 None:intergenic 35.0%
AAAAAAGATACCTGCCTGGA+AGG + chr6.4:30089111-30089130 None:intergenic 40.0%
AAATTAACACATGTAGGGCC+GGG - chr6.4:30088138-30088157 MS.gene93457:CDS 40.0%
AAGAAGCAGCAGAAGTTGTT+TGG - chr6.4:30085522-30085541 MS.gene93457:intron 40.0%
AATGCAACTAGCCACTGAAA+GGG - chr6.4:30086399-30086418 MS.gene93457:intron 40.0%
AGAAGCAGCAGAAGTTGTTT+GGG - chr6.4:30085523-30085542 MS.gene93457:intron 40.0%
AGAATCCTATCTATCCGATG+TGG - chr6.4:30088720-30088739 MS.gene93457:CDS 40.0%
AGTACTGCCGAGAAAAAAGT+CGG - chr6.4:30086031-30086050 MS.gene93457:intron 40.0%
ATAGCATGTCACGAAAATCG+GGG - chr6.4:30088631-30088650 MS.gene93457:CDS 40.0%
ATTGATGTAACTCTCTCAGG+AGG - chr6.4:30086661-30086680 MS.gene93457:intron 40.0%
CAACGTGCATTGTTGAATCA+TGG - chr6.4:30089227-30089246 MS.gene93457:CDS 40.0%
CCCAAGCCCTATAATTAATC+GGG + chr6.4:30087881-30087900 None:intergenic 40.0%
CCCGATTAATTATAGGGCTT+GGG - chr6.4:30087878-30087897 MS.gene93457:CDS 40.0%
CGATACTCAGGAAAATACTG+AGG - chr6.4:30085754-30085773 MS.gene93457:intron 40.0%
GAATCCTATCTATCCGATGT+GGG - chr6.4:30088721-30088740 MS.gene93457:CDS 40.0%
GATAGCATGTCACGAAAATC+GGG - chr6.4:30088630-30088649 MS.gene93457:CDS 40.0%
GCCCAAGCCCTATAATTAAT+CGG + chr6.4:30087882-30087901 None:intergenic 40.0%
GCTTTGCATGAAAACGTCAT+TGG - chr6.4:30086303-30086322 MS.gene93457:intron 40.0%
GTAACTGAGTTCAACCTCAA+CGG - chr6.4:30085620-30085639 MS.gene93457:intron 40.0%
TAATGCAACTAGCCACTGAA+AGG - chr6.4:30086398-30086417 MS.gene93457:intron 40.0%
TATCCAACTACAGAATGCGA+AGG - chr6.4:30086084-30086103 MS.gene93457:intron 40.0%
TCAGGAAAATACTGAGGTGT+TGG - chr6.4:30085760-30085779 MS.gene93457:intron 40.0%
TCATATACACAGGGGAAATG+GGG - chr6.4:30085285-30085304 MS.gene93457:intron 40.0%
TGACTATCAGATCCATCGTT+CGG - chr6.4:30088414-30088433 MS.gene93457:CDS 40.0%
TGAGGTTGAACTCAGTTACT+TGG + chr6.4:30085619-30085638 None:intergenic 40.0%
TGATAGTCAGATCCATCGTT+CGG + chr6.4:30088403-30088422 None:intergenic 40.0%
TGTCAAAAAAGATACCTGCC+TGG + chr6.4:30089115-30089134 None:intergenic 40.0%
TTCAATAAAACCTTCCAGGC+AGG - chr6.4:30089098-30089117 MS.gene93457:CDS 40.0%
TTGATGTAACTCTCTCAGGA+GGG - chr6.4:30086662-30086681 MS.gene93457:intron 40.0%
! AAGGGAGCGCATTAATAAAC+AGG - chr6.4:30086417-30086436 MS.gene93457:intron 40.0%
! AATGCTACCGAGGTGTTAAT+GGG - chr6.4:30085566-30085585 MS.gene93457:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr6.4:30087433-30087452 MS.gene93457:intron 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr6.4:30087431-30087450 MS.gene93457:intron 40.0%
! GACTAAATCCCACTGAGTTT+TGG - chr6.4:30088311-30088330 MS.gene93457:CDS 40.0%
! GGCTGGCATTTTAGATTTTG+AGG - chr6.4:30084954-30084973 MS.gene93457:intron 40.0%
! TTTGCGAGAAATGCGTTTTG+GGG + chr6.4:30086998-30087017 None:intergenic 40.0%
!! ATACTGAGGTGTTGGATTTG+AGG - chr6.4:30085768-30085787 MS.gene93457:intron 40.0%
!! ATGCTGCTTTAGAGAAGAAC+GGG - chr6.4:30085711-30085730 MS.gene93457:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6.4:30088657-30088676 None:intergenic 40.0%
!! GATGCTGCTTTAGAGAAGAA+CGG - chr6.4:30085710-30085729 MS.gene93457:intron 40.0%
!! GCAGCTAGATGCTTTAAAAC+AGG - chr6.4:30088926-30088945 MS.gene93457:intron 40.0%
!! GCTTAACTTCACTTTTGCAC+TGG - chr6.4:30089380-30089399 MS.gene93457:CDS 40.0%
!! TACTGAGGTGTTGGATTTGA+GGG - chr6.4:30085769-30085788 MS.gene93457:intron 40.0%
!! TTTCAAGTCCGTTTTCCAAC+CGG - chr6.4:30088174-30088193 MS.gene93457:CDS 40.0%
!! TTTTTGTTATGCGGGCTAAC+GGG + chr6.4:30087999-30088018 None:intergenic 40.0%
!!! AAGCGAACCGACTTTTTTCT+CGG + chr6.4:30086041-30086060 None:intergenic 40.0%
!!! GTTTTAAAGCATCTAGCTGC+AGG + chr6.4:30088926-30088945 None:intergenic 40.0%
!!! TTTTGGGGTGAGAAGATGAA+AGG + chr6.4:30086983-30087002 None:intergenic 40.0%
AAAAAGCCCGGTTGGAAAAC+GGG - chr6.4:30088603-30088622 MS.gene93457:CDS 45.0%
AAAACCGCTATGCAGTGTTG+CGG + chr6.4:30086821-30086840 None:intergenic 45.0%
AATAAAGCCTGAAGCCCGTT+AGG - chr6.4:30088214-30088233 MS.gene93457:CDS 45.0%
AATAAAGCCTGAAGCCCGTT+AGG + chr6.4:30088233-30088214 None:intergenic 45.0%
AGATGCAAAAAGCCGAACGA+TGG - chr6.4:30088388-30088407 MS.gene93457:CDS 45.0%
AGATGCAAAAAGCCGAACGA+TGG + chr6.4:30088407-30088388 None:intergenic 45.0%
AGGAAGAACGTAGTGGTAAC+TGG + chr6.4:30088906-30088925 None:intergenic 45.0%
AGTGGGATTTAGTCCCACAT+CGG + chr6.4:30088305-30088324 None:intergenic 45.0%
AGTTAATAGCGGCGCTATAG+CGG - chr6.4:30086707-30086726 MS.gene93457:intron 45.0%
ATAAAGCCTGAAGCCCGTTA+GGG - chr6.4:30088215-30088234 MS.gene93457:CDS 45.0%
ATAAAGCCTGAAGCCCGTTA+GGG + chr6.4:30088234-30088215 None:intergenic 45.0%
ATGCCTTCGCATTCTGTAGT+TGG + chr6.4:30086090-30086109 None:intergenic 45.0%
ATTAATCGGGCTAAACGGGT+CGG + chr6.4:30087868-30087887 None:intergenic 45.0%
ATTAATGCGCTCCCTTTCAG+TGG + chr6.4:30086413-30086432 None:intergenic 45.0%
CAAAAAGCCCGGTTGGAAAA+CGG - chr6.4:30088602-30088621 MS.gene93457:CDS 45.0%
CAAAAAGCCCGGTTGGAAAA+CGG + chr6.4:30088621-30088602 None:intergenic 45.0%
CGAAATCCCCATTAACACCT+CGG + chr6.4:30085576-30085595 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr6.4:30087439-30087458 None:intergenic 45.0%
GAAGCAGCAGAAGTTGTTTG+GGG - chr6.4:30085524-30085543 MS.gene93457:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr6.4:30087438-30087457 None:intergenic 45.0%
GCAGCTTCAGAAAAGTCTTG+TGG - chr6.4:30085158-30085177 MS.gene93457:CDS 45.0%
GCCCGATTAATTATAGGGCT+TGG - chr6.4:30087877-30087896 MS.gene93457:CDS 45.0%
GCGCCGTAAAGAATGAAAGA+AGG + chr6.4:30086961-30086980 None:intergenic 45.0%
TAGTCCCACATCGGATAGAT+AGG + chr6.4:30088296-30088315 None:intergenic 45.0%
TATCTCATAACGCTACGCCA+TGG + chr6.4:30086783-30086802 None:intergenic 45.0%
TCCACGTAGAGCTGTCAAAA+CGG - chr6.4:30088537-30088556 MS.gene93457:CDS 45.0%
TCCACGTAGAGCTGTCAAAA+CGG + chr6.4:30088556-30088537 None:intergenic 45.0%
TGAAATATCCTACCTGAGCC+CGG + chr6.4:30088159-30088178 None:intergenic 45.0%
TGATGTAACTCTCTCAGGAG+GGG - chr6.4:30086663-30086682 MS.gene93457:intron 45.0%
TTCGCTTGAGAAGCAACTGA+GGG - chr6.4:30086054-30086073 MS.gene93457:intron 45.0%
! ATCAAAGCCCGTTTTCCAAC+CGG + chr6.4:30088613-30088632 None:intergenic 45.0%
! ATGCCACTTGTTCAGTGTAG+CGG + chr6.4:30085493-30085512 None:intergenic 45.0%
! ATGCTACCGAGGTGTTAATG+GGG - chr6.4:30085567-30085586 MS.gene93457:intron 45.0%
! CAATGCTACCGAGGTGTTAA+TGG - chr6.4:30085565-30085584 MS.gene93457:intron 45.0%
! GATTTTGCCACCGCGTTTTT+TGG - chr6.4:30089402-30089421 MS.gene93457:CDS 45.0%
! GGTGTTGGATTTGAGGGAAA+AGG - chr6.4:30085775-30085794 MS.gene93457:intron 45.0%
! TTCAAGTCCGTTTTCCAACC+GGG - chr6.4:30088175-30088194 MS.gene93457:CDS 45.0%
! TTTTGCATCTTCCACGCTTC+AGG - chr6.4:30088439-30088458 MS.gene93457:CDS 45.0%
! TTTTGCATCTTCCACGCTTC+AGG + chr6.4:30088458-30088439 None:intergenic 45.0%
!! AACGGGCTTCAGGCTTTATT+GGG - chr6.4:30088573-30088592 MS.gene93457:CDS 45.0%
!! AACGGGCTTCAGGCTTTATT+GGG + chr6.4:30088592-30088573 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+CGG - chr6.4:30088664-30088683 MS.gene93457:CDS 45.0%
!! TAACGGGCTTCAGGCTTTAT+TGG - chr6.4:30088572-30088591 MS.gene93457:CDS 45.0%
!! TAACGGGCTTCAGGCTTTAT+TGG + chr6.4:30088591-30088572 None:intergenic 45.0%
!! TCATCGGCTAGCCTATTCTT+CGG - chr6.4:30084801-30084820 MS.gene93457:intron 45.0%
!! GAAAAATATATATAATTTAT+AGG + chr6.4:30088027-30088046 None:intergenic 5.0%
AAAAAGCCCGGTACCCGTTA+GGG - chr6.4:30087949-30087968 MS.gene93457:CDS 50.0%
ACTCCGCTACACTGAACAAG+TGG - chr6.4:30085487-30085506 MS.gene93457:intron 50.0%
AGCCTATTCTTCGGAGAAGC+TGG - chr6.4:30084810-30084829 MS.gene93457:intron 50.0%
AGCGCCGCTATTAACTACTC+TGG + chr6.4:30086703-30086722 None:intergenic 50.0%
ATACACAGGGGAAATGGGGA+AGG - chr6.4:30085289-30085308 MS.gene93457:intron 50.0%
ATTGGGCCGGACTGTCAAAA+CGG - chr6.4:30087827-30087846 MS.gene93457:CDS 50.0%
CACCAGCTTCTCCGAAGAAT+AGG + chr6.4:30084815-30084834 None:intergenic 50.0%
CCACGTAGAGCTGTCAAAAC+GGG - chr6.4:30088538-30088557 MS.gene93457:CDS 50.0%
CCACGTAGAGCTGTCAAAAC+GGG + chr6.4:30088557-30088538 None:intergenic 50.0%
CGCCATGGCTTATTGCATAG+CGG + chr6.4:30086768-30086787 None:intergenic 50.0%
CTCGCTGCATATAACCGTTG+AGG + chr6.4:30085637-30085656 None:intergenic 50.0%
GAAATAGCGGTCATAGCGCT+AGG - chr6.4:30087406-30087425 MS.gene93457:intron 50.0%
GACCGCTATGCAATAAGCCA+TGG - chr6.4:30086763-30086782 MS.gene93457:intron 50.0%
GGCGTAGCGTTATGAGATAG+CGG - chr6.4:30086784-30086803 MS.gene93457:intron 50.0%
GGTGGGATTTAGTCCCACAT+CGG + chr6.4:30088737-30088756 None:intergenic 50.0%
GTCGTGCAGACATTTGACTG+AGG - chr6.4:30085044-30085063 MS.gene93457:intron 50.0%
GTGTAGACCAAAAAACGCGG+TGG + chr6.4:30089412-30089431 None:intergenic 50.0%
GTTAGCGGCCAAAACTCAGT+GGG + chr6.4:30088322-30088341 None:intergenic 50.0%
GTTAGTGGTCAACACTCGGT+GGG + chr6.4:30088754-30088773 None:intergenic 50.0%
GTTCGCTTGAGAAGCAACTG+AGG - chr6.4:30086053-30086072 MS.gene93457:intron 50.0%
TAAAAAGCCCGGTACCCGTT+AGG - chr6.4:30087948-30087967 MS.gene93457:CDS 50.0%
TAGCTGCAGGAAGAACGTAG+TGG + chr6.4:30088913-30088932 None:intergenic 50.0%
TGAAGCAGACAATGCTACCG+AGG - chr6.4:30085556-30085575 MS.gene93457:intron 50.0%
TGGCTTATTGCATAGCGGTC+CGG + chr6.4:30086763-30086782 None:intergenic 50.0%
TGTTAGCGGCCAAAACTCAG+TGG + chr6.4:30088513-30088494 None:intergenic 50.0%
TGTTAGTGGTCAACACTCGG+TGG + chr6.4:30088755-30088774 None:intergenic 50.0%
! AAAGCAACGGCGGCGTTTTA+CGG + chr6.4:30087047-30087066 None:intergenic 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - chr6.4:30086795-30086814 MS.gene93457:intron 50.0%
! CGTTTTCCAACCGGGCTTTT+TGG - chr6.4:30088183-30088202 MS.gene93457:CDS 50.0%
! CGTTTTCCAACCGGGCTTTT+TGG + chr6.4:30088202-30088183 None:intergenic 50.0%
! TCAAAGCCCGTTTTCCAACC+GGG + chr6.4:30088612-30088631 None:intergenic 50.0%
! TTTTGACAGTCCGGCCCAAT+GGG + chr6.4:30087827-30087846 None:intergenic 50.0%
!! AGCATGAGGGGGTTTGTTAG+CGG - chr6.4:30088480-30088499 MS.gene93457:CDS 50.0%
!! AGCATGAGGGGGTTTGTTAG+CGG + chr6.4:30088499-30088480 None:intergenic 50.0%
!! AGCTGAGAGTGCTGAAGCAA+AGG - chr6.4:30085943-30085962 MS.gene93457:intron 50.0%
!! CCGTACAAGCCGGTTTTGTA+AGG + chr6.4:30088667-30088686 None:intergenic 50.0%
!!! AACGGGTACCGGGCTTTTTA+GGG + chr6.4:30087948-30087967 None:intergenic 50.0%
!!! TAACGGGTACCGGGCTTTTT+AGG + chr6.4:30087949-30087968 None:intergenic 50.0%
CGTAGAGCTGTCAAAACGGG+CGG - chr6.4:30088541-30088560 MS.gene93457:CDS 55.0%
CGTAGAGCTGTCAAAACGGG+CGG + chr6.4:30088560-30088541 None:intergenic 55.0%
GCTTGAGAAGTCGCTCGCAA+GGG - chr6.4:30085406-30085425 MS.gene93457:intron 55.0%
TGCTTGAGAAGTCGCTCGCA+AGG - chr6.4:30085405-30085424 MS.gene93457:intron 55.0%
TTCAAACCCCCTCACGCTTC+AGG - chr6.4:30087801-30087820 MS.gene93457:CDS 55.0%
TTCCACGCTTCAGGCCCATT+GGG - chr6.4:30088448-30088467 MS.gene93457:CDS 55.0%
TTCCACGCTTCAGGCCCATT+GGG + chr6.4:30088467-30088448 None:intergenic 55.0%
TTGGGCCGGACTGTCAAAAC+GGG - chr6.4:30087828-30087847 MS.gene93457:CDS 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG - chr6.4:30088669-30088688 MS.gene93457:CDS 55.0%
!! CCCGTTTTGACAGCTCTACG+TGG - chr6.4:30088246-30088265 MS.gene93457:CDS 55.0%
!! CCCGTTTTGACAGCTCTACG+TGG + chr6.4:30088265-30088246 None:intergenic 55.0%
!! GCGAAGGCATCTTCTGAAGC+AGG - chr6.4:30086100-30086119 MS.gene93457:intron 55.0%
!! GCTTCAGGCTTTATTGGGCC+GGG - chr6.4:30088578-30088597 MS.gene93457:CDS 55.0%
!! GCTTCAGGCTTTATTGGGCC+GGG + chr6.4:30088597-30088578 None:intergenic 55.0%
!! GGCTTCAGGCTTTATTGGGC+CGG - chr6.4:30088577-30088596 MS.gene93457:CDS 55.0%
!! GGCTTCAGGCTTTATTGGGC+CGG + chr6.4:30088596-30088577 None:intergenic 55.0%
!! GTTTTGACAGTCCGGCCCAA+TGG + chr6.4:30087828-30087847 None:intergenic 55.0%
AACCCCCTCATGCTTCAGCC+CGG - chr6.4:30088343-30088362 MS.gene93457:CDS 60.0%
AACCCCCTCATGCTTCAGCC+CGG + chr6.4:30088362-30088343 None:intergenic 60.0%
AATGGGCCTGAAGCGTGAGG+GGG + chr6.4:30087810-30087829 None:intergenic 60.0%
ATGCTTCAGCCCGGCCCAAT+GGG - chr6.4:30088352-30088371 MS.gene93457:CDS 60.0%
ATGCTTCAGCCCGGCCCAAT+GGG + chr6.4:30088371-30088352 None:intergenic 60.0%
CAATGGGCCTGAAGCGTGAG+GGG + chr6.4:30087811-30087830 None:intergenic 60.0%
CCAATGGGCCTGAAGCGTGA+GGG + chr6.4:30087812-30087831 None:intergenic 60.0%
CCTCACGCTTCAGGCCCATT+GGG - chr6.4:30087810-30087829 MS.gene93457:CDS 60.0%
CTTCCACGCTTCAGGCCCAT+TGG - chr6.4:30088447-30088466 MS.gene93457:CDS 60.0%
CTTCCACGCTTCAGGCCCAT+TGG + chr6.4:30088466-30088447 None:intergenic 60.0%
GCACTCCTCACCGTACAAGC+CGG + chr6.4:30088677-30088696 None:intergenic 60.0%
GGCGCTATAGCGGCCAATAG+CGG - chr6.4:30086717-30086736 MS.gene93457:intron 60.0%
TCAAAACGGGCCTGGCCGTA+CGG - chr6.4:30087841-30087860 MS.gene93457:CDS 60.0%
!! CCAGGCCCGTTTTGACAGTC+CGG + chr6.4:30087836-30087855 None:intergenic 60.0%
!! TCCAACCGGGCTTTTTGGCC+CGG - chr6.4:30088188-30088207 MS.gene93457:CDS 60.0%
!! TCCAACCGGGCTTTTTGGCC+CGG + chr6.4:30088207-30088188 None:intergenic 60.0%
!!! GGTACCGGGCTTTTTAGGGC+CGG + chr6.4:30087944-30087963 None:intergenic 60.0%
!!! GTACCGGGCTTTTTAGGGCC+GGG + chr6.4:30087943-30087962 None:intergenic 60.0%
ACACATGTAGGGCCGGGCTC+AGG - chr6.4:30088144-30088163 MS.gene93457:CDS 65.0%
ACGCTTCAGGCCCATTGGGC+CGG - chr6.4:30087814-30087833 MS.gene93457:CDS 65.0%
ACGCTTCAGGCCCATTGGGC+CGG + chr6.4:30087833-30087814 None:intergenic 65.0%
AGCCTGAAGCCCGTTAGGGC+CGG - chr6.4:30088219-30088238 MS.gene93457:CDS 65.0%
AGCCTGAAGCCCGTTAGGGC+CGG + chr6.4:30088238-30088219 None:intergenic 65.0%
AGCTGTCAAAACGGGCGGCC+CGG - chr6.4:30088546-30088565 MS.gene93457:CDS 65.0%
AGCTGTCAAAACGGGCGGCC+CGG + chr6.4:30088565-30088546 None:intergenic 65.0%
ATGTAGGGCCGGGCTCAGGT+AGG - chr6.4:30088148-30088167 MS.gene93457:CDS 65.0%
CAAAACGGGCCTGGCCGTAC+GGG - chr6.4:30087842-30087861 MS.gene93457:CDS 65.0%
CATGCTTCAGCCCGGCCCAA+TGG - chr6.4:30088351-30088370 MS.gene93457:CDS 65.0%
CATGCTTCAGCCCGGCCCAA+TGG + chr6.4:30088370-30088351 None:intergenic 65.0%
CCCAATGGGCCTGAAGCGTG+AGG + chr6.4:30088385-30088366 None:intergenic 65.0%
CCCTCACGCTTCAGGCCCAT+TGG - chr6.4:30087809-30087828 MS.gene93457:CDS 65.0%
CCGGACTGTCAAAACGGGCC+TGG - chr6.4:30087833-30087852 MS.gene93457:CDS 65.0%
GCGGCCGCAACACTGCATAG+CGG - chr6.4:30086814-30086833 MS.gene93457:intron 65.0%
GCTAAACGGGTCGGCCCGTA+CGG + chr6.4:30087859-30087878 None:intergenic 65.0%
TCGCCCGGCCCTAAAAAGCC+CGG - chr6.4:30087937-30087956 MS.gene93457:CDS 65.0%
TGGGCCGGGCTGAAGCATGA+GGG - chr6.4:30088467-30088486 MS.gene93457:CDS 65.0%
TGGGCCGGGCTGAAGCATGA+GGG + chr6.4:30088486-30088467 None:intergenic 65.0%
TTGGGCCGGGCCAAAAAGCC+CGG - chr6.4:30088591-30088610 MS.gene93457:CDS 65.0%
TTGGGCCGGGCCAAAAAGCC+CGG + chr6.4:30088610-30088591 None:intergenic 65.0%
TTGGGCCGGGCTGAAGCATG+AGG - chr6.4:30088466-30088485 MS.gene93457:CDS 65.0%
TTGGGCCGGGCTGAAGCATG+AGG + chr6.4:30088485-30088466 None:intergenic 65.0%
! GGCTAGCCCTAACGGGTACC+GGG + chr6.4:30087958-30087977 None:intergenic 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr6.4:30087463-30087482 None:intergenic 65.0%
!! CCCGTTAGGGCTAGCCCGAA+CGG - chr6.4:30087962-30087981 MS.gene93457:CDS 65.0%
!! CCCGTTCGGGCTAGCCCTAA+CGG + chr6.4:30087966-30087985 None:intergenic 65.0%
!! CCGTTAGGGCTAGCCCGAAC+GGG - chr6.4:30087963-30087982 MS.gene93457:CDS 65.0%
!! CCGTTCGGGCTAGCCCTAAC+GGG + chr6.4:30087965-30087984 None:intergenic 65.0%
!! GGGCTAGCCCTAACGGGTAC+CGG + chr6.4:30087959-30087978 None:intergenic 65.0%
CGCTTCAGGCCCATTGGGCC+GGG - chr6.4:30087815-30087834 MS.gene93457:CDS 70.0%
CGCTTCAGGCCCATTGGGCC+GGG + chr6.4:30087834-30087815 None:intergenic 70.0%
GCCGGGCCAAAAAGCCCGGT+TGG - chr6.4:30088595-30088614 MS.gene93457:CDS 70.0%
GCCGGGCCAAAAAGCCCGGT+TGG + chr6.4:30088614-30088595 None:intergenic 70.0%
GCCTGAAGCCCGTTAGGGCC+GGG - chr6.4:30088220-30088239 MS.gene93457:CDS 70.0%
GCCTGAAGCCCGTTAGGGCC+GGG + chr6.4:30088239-30088220 None:intergenic 70.0%
GGCCCAATGGGCCTGAAGCG+TGG - chr6.4:30088364-30088383 MS.gene93457:CDS 70.0%
GGCCCAATGGGCCTGAAGCG+TGG + chr6.4:30088383-30088364 None:intergenic 70.0%
GGCCGGGCTGAAGCATGAGG+GGG - chr6.4:30088469-30088488 MS.gene93457:CDS 70.0%
GGCCGGGCTGAAGCATGAGG+GGG + chr6.4:30088488-30088469 None:intergenic 70.0%
GGGCCGGGCTGAAGCATGAG+GGG - chr6.4:30088468-30088487 MS.gene93457:CDS 70.0%
GGGCCGGGCTGAAGCATGAG+GGG + chr6.4:30088487-30088468 None:intergenic 70.0%
!! GCGGGCTAACGGGCTACCTG+CGG + chr6.4:30087989-30088008 None:intergenic 70.0%
AACGGGCGGCCCGGCCCTAA+CGG - chr6.4:30088555-30088574 MS.gene93457:CDS 75.0%
AACGGGCGGCCCGGCCCTAA+CGG + chr6.4:30088574-30088555 None:intergenic 75.0%
AGCGGCCAATAGCGGCCGCG+CGG - chr6.4:30086725-30086744 MS.gene93457:intron 75.0%
CCAATAGCGGCCGCGCGGTG+CGG - chr6.4:30086730-30086749 MS.gene93457:intron 75.0%
CGGGCTACCTGCGGCCCGTT+CGG + chr6.4:30087980-30087999 None:intergenic 75.0%
GGGCTACCTGCGGCCCGTTC+GGG + chr6.4:30087979-30087998 None:intergenic 75.0%
!! GCCCGGCCCTAACGGGCTTC+AGG - chr6.4:30088563-30088582 MS.gene93457:CDS 75.0%
!! GCCCGGCCCTAACGGGCTTC+AGG + chr6.4:30088582-30088563 None:intergenic 75.0%
! ACGGGCGGCCCGGCCCTAAC+GGG - chr6.4:30088556-30088575 MS.gene93457:CDS 80.0%
! ACGGGCGGCCCGGCCCTAAC+GGG + chr6.4:30088575-30088556 None:intergenic 80.0%
! ACGGGTCGGCCCGTACGGCC+AGG + chr6.4:30087854-30087873 None:intergenic 80.0%
! CCGCACCGCGCGGCCGCTAT+TGG + chr6.4:30086733-30086752 None:intergenic 80.0%
! CGCGCGGTGCGGTGCGGTAC+CGG - chr6.4:30086741-30086760 MS.gene93457:intron 80.0%
! CGGTACCGCACCGCACCGCG+CGG + chr6.4:30086743-30086762 None:intergenic 80.0%
!! GGCTAGCCCGAACGGGCCGC+AGG - chr6.4:30087970-30087989 MS.gene93457:CDS 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - chr6.4:30086735-30086754 MS.gene93457:intron 85.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 30084697 30089481 30084697 ID=MS.gene93457
chr6.4 mRNA 30084697 30089481 30084697 ID=MS.gene93457.t1;Parent=MS.gene93457
chr6.4 exon 30088980 30089481 30088980 ID=MS.gene93457.t1.exon1;Parent=MS.gene93457.t1
chr6.4 CDS 30088980 30089481 30088980 ID=cds.MS.gene93457.t1;Parent=MS.gene93457.t1
chr6.4 exon 30087740 30088881 30087740 ID=MS.gene93457.t1.exon2;Parent=MS.gene93457.t1
chr6.4 CDS 30087740 30088881 30087740 ID=cds.MS.gene93457.t1;Parent=MS.gene93457.t1
chr6.4 exon 30085059 30085248 30085059 ID=MS.gene93457.t1.exon3;Parent=MS.gene93457.t1
chr6.4 CDS 30085059 30085248 30085059 ID=cds.MS.gene93457.t1;Parent=MS.gene93457.t1
chr6.4 exon 30084697 30084722 30084697 ID=MS.gene93457.t1.exon4;Parent=MS.gene93457.t1
chr6.4 CDS 30084697 30084722 30084697 ID=cds.MS.gene93457.t1;Parent=MS.gene93457.t1
Gene Sequence

>MS.gene93457

ATGGATGCAGCTTTAGAAAAACTCTACTCACTCAAGGGTTTCTCAACAAAAGAAAACGACATCCATGATCTTGATATATCCTTGCAAGCCTTAACAGAAATAGATCATCGGCTAGCCTATTCTTCGGAGAAGCTGGTGAACTTACATGTTCTGTATATTTATCTACTGGCTCGAGAAAACGATCTTGAAGAAATAGATTCAAAGAATACCCGCGACTTAGAAAACTCATTTCAGAAGGCAATGATGTTTGATCTATTGGCTGGCATTTTAGATTTTGAGGCAACAGAGCTTGACAATTTCATGGACACTCTACATGAAGAAATTGTTGATGCTCGTCATAAAATATTGTCGTGCAGACATTTGACTGAGGTTTTCTTTATAATGGATGAAAAATTGCAAGATTCCGATGAGTCTAAGAAGCTATTACAACAACAGTTATTGGAATTAAAGATTCAGTCATCGCAGCTTCAGAAAAGTCTTGTGGCTTTCCAACATGAGAATTGTAAGTTGAAATATTACACAGATTTTTCTTTTTTTTCGAAAAATTTACATTGAGTTATTTTTCATTTATTTATCGTTTTTAGTCATTCATATACACAGGGGAAATGGGGAAGGCTTTGAATTTATCAGAAAATAGTCATGTGTCAAATGTGAAAGTGAAAACGAAAGATCAGAGAATGGTAGATCAACAGAGATATATTCTTCGAATGCTTGAGAAGTCGCTCGCAAGGGAGCTAGATCTTGAAAAGAAGTTAGCAGAGTCAAGAAGTAACGAAGAACTAAAGTTGAAACTCCGCTACACTGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTTGTTTGGGGAAGATTTCTTGAAGCAGACAATGCTACCGAGGTGTTAATGGGGATTTCGAAAAGTATAATGGGACGTCTCCAAGTAACTGAGTTCAACCTCAACGGTTATATGCAGCGAGAAAATGAGCTAAAATTGAATATTCAAATTTTAATCGAACAACTTAAGGCTAAAGATGCTGCTTTAGAGAAGAACGGGAGATGTAATCTTAATGTTGACGATACTCAGGAAAATACTGAGGTGTTGGATTTGAGGGAAAAGGTGAAAATTCTAGAAGAAGAACGAAAGAATTTTGAGGTTCAGATAAATTCTCTGAGTGAAGAGAATGAAGCCTGTCATGAACATCTTATAGAAATAGAAAATTTTGCCGAATCTCTAAAAGAAAGCATTGATATAGCAGAAAATCGAGCTGAGAGTGCTGAAGCAAAGGTTACACAGTTAACTGAAACGAACATGGAACTTACTGAAGAGCTGAACTTTCTTAAAGGGAGTGCTAGTACTGCCGAGAAAAAAGTCGGTTCGCTTGAGAAGCAACTGAGGGAGCTAGATATCCAACTACAGAATGCGAAGGCATCTTCTGAAGCAGGTCAAGAACAGCAGAATATGTTATACACAGCAATTTGGGATATGGAAATATTAATTGAAGAGCTAAAATCTAAGGTTTCAAAAGCTGAAGGTAATAAAGATAGCGCTGAAGAACAATGCATTATGCTATCTGAAAATAACCTTGAACTTCATAAAGAGTTGGATCTCTTCAAGTCGAGAATGCTTTGCATGAAAACGTCATTGGATCACGCCAGCAATACAAAATTATCAAGTGCAAAAGAAATTGATACCAGAACAAAGTTTATCATGGATTTGGTAATGCAACTAGCCACTGAAAGGGAGCGCATTAATAAACAGGTATTTACGTTTAACCTCGTCAAATAAGTTCTATGTTTTTATCTTTTATGGAATCTCAGTTTGGTCCTTTAATGATCATTTCATGCAATTTTTGTTCACCTTAACTTTGTATACCAAGTCCAAATTGAACTGAAAATATTCAAGGTATCAATTAACGAAATTTAACATAGAAGTTTCTAATTACTCATTAGAGCATCTTCAATGGGAGCTGTTTTGCCTAACATTGATGTAACTCTCTCAGGAGGGGAGAGAAAATTGATACCAGAGTAGTTAATAGCGGCGCTATAGCGGCCAATAGCGGCCGCGCGGTGCGGTGCGGTACCGGACCGCTATGCAATAAGCCATGGCGTAGCGTTATGAGATAGCGGCGCAATAGCGGCCGCAACACTGCATAGCGGTTTTGCAGTCTAGCACCGCTATTTCATTTTACGTGAAAATACAAGATTCTCCTTGGTTTTAAAAAAAACAAGGGTATTTTTGTCGTTTTCGTCAAACCCTAATAACTTCAGTTTCTCTCTTCCTTCTTTCATTCTTTACGGCGCCTTTCATCTTCTCACCCCAAAACGCATTTCTCGCAAAAAACGGACGATCTGTACATCTTCTCACCGTAAAACGCCGCCGTTGCTTTATATTAGATAATCATCATTGATCATCATTGATTTCCAATGCTATGTTATGTTGGAATTATCAGTTCTTTTCTTTAGGATTTAATGTTTTGAATTTTGGTTAAGACTTTTGAATTTTGATATTATGTTGGAGACTTGAAAGCTTTCGTAATGTTCTGAATTTTGGTGGTTTGTAACTTTGAATGATTTTGAGTAAAACATTTCATAAGATTTAGGTGGTTTGTAACATTGTGTGATTTATGAATGTGTCATGAGATTTGAATGTTATATTTAATTTTATATTAGATATATGTTTGTTTATAATTTATAGTATTATTTATATAATTTGTCCTAAAAGTTATGAAATAGCGGTCATAGCGCTAGGCGCTATCCCGCTATAGCATTTTTGGGGTCGACCGCTACGCGCCGCTATCCGCTATTAACTACTATGATTGATACCATATTAAGAAACTGTGAAAATGTGAATGTGATTCATTAGATTGAACAAAGATTACATCGATGTATTTATACACTTTGCTTATTGTACCATCAATCTAGAATGTACTACACTAACGAAGCTAAAGTACTACTCTATGTTAATGACTTGTACTGCAAGCTTTCTTTATCTTCATGCTTAGTTTTACTTGTATCAGCATTGTGCAATTAGTGGTGCTGACAGCTAACAAAAAGCTATCAGATAGTGGGTTTTGAGATAGTTATAATAAGAGTGAGAGAACACCATAAAGAATATAAACTCTTCAAACCCCCTCACGCTTCAGGCCCATTGGGCCGGACTGTCAAAACGGGCCTGGCCGTACGGGCCGACCCGTTTAGCCCGATTAATTATAGGGCTTGGGCCTTAAATATTGAGCCCGAATTTTAATAGAGCTTTTTCGCCCGGCCCTAAAAAGCCCGGTACCCGTTAGGGCTAGCCCGAACGGGCCGCAGGTAGCCCGTTAGCCCGCATAACAAAAAAAATTCCTATAAATTATATATATTTTTCAAATAATTCTTTACTTAGTTGATTATCAAAGTAAAAAATAAAAGTGAAAATTCAATGAATTAACACATAAATGTAAATATAAAATTATATAAAATTAACACATGTAGGGCCGGGCTCAGGTAGGATATTTCAAGTCCGTTTTCCAACCGGGCTTTTTGGCCCGGCCCAATAAAGCCTGAAGCCCGTTAGGGCCGGGCCGCCCGTTTTGACAGCTCTACGTGGAAGATATAAACTCTTCTCAAGAATCTTATCTATCCGATGTGGGACTAAATCCCACTGAGTTTTGGCCGCTAACAAACCCCCTCATGCTTCAGCCCGGCCCAATGGGCCTGAAGCGTGGAAGATGCAAAAAGCCGAACGATGGATCTGACTATCAGATCCATCGTTCGGCTTTTTGCATCTTCCACGCTTCAGGCCCATTGGGCCGGGCTGAAGCATGAGGGGGTTTGTTAGCGGCCAAAACTCAGATTCTTGAGAAGAGTTTATATCTTCCACGTAGAGCTGTCAAAACGGGCGGCCCGGCCCTAACGGGCTTCAGGCTTTATTGGGCCGGGCCAAAAAGCCCGGTTGGAAAACGGGCTTTGATAGCATGTCACGAAAATCGGGGCCTAACTCATCCTTACAAAACCGGCTTGTACGGTGAGGAGTGCCTCCTTTTTATAAACTCTTCTCAAGAATCCTATCTATCCGATGTGGGACTAAATCCCACCGAGTGTTGACCACTAACAAAAACTTCTAGGCATTTTTGAATTTGTTTTACTCTTGGAGTTGGAGAATCGTATCCTCTCGAATAAATGTGTATTGTTTCTATTAATCAATAACAATATCTTTTTTCAATTCCTTTGCTTATTCTGAACCAGTTACCACTACGTTCTTCCTGCAGCTAGATGCTTTAAAACAGGAAAATAAAAGTTTGGTAGGAAAGTTAAAGGAGACTAAAATTGGTGCATGCAACAATGGGATAATTAACAGAAATGAAGATCAAGCTTCCAACATTGACTCAAGCAATGATAGCTGTACAAAATCATTTGATGAAGAAGGAATGGAACACTTCAATAAAACCTTCCAGGCAGGTATCTTTTTTGACATAGGAAGTTAATTCCTTCGTTGCATATTCTAACATAGGAAGTAGATACAAGTTTTCGTTAAACCTTCTCTCTGATAAAATGATAATCTATCTCAACGTGCATTGTTGAATCATGGAAAATTGGATTTGATATATTATGAATGCCTACATAGTTATCATGCCTAGATTTTTTAAGAAAAGTATTTCCAAATCCCATCTTTTCCAAGAATTCTTACACATAAAAACACAAGTCGTTTGAGCCATAGCGCTTAACTTCACTTTTGCACTGGATTTTGCCACCGCGTTTTTTGGTCTACACTTTATTAATAATACTTCGTTTTAGAATTTATTGGTATACCGACAATATAA

Protein sequence

>MS.gene93457.t1

MDAALEKLYSLKGFSTKENDIHDLDISLQALTEIDHRLAYSSEKLVNLHVLYIYLLARENDLEEIDSKNTRDLENSFQKAMMFDLLAGILDFEATELDNFMDTLHEEIVDARHKILSCRHLTEVFFIMDEKLQDSDESKKLLQQQLLELKIQSSQLQKSLVAFQHENWEMGKALNLSENSHVSNVKVKTKDQRMVDQQRYILRMLEKSLARELDLEKKLAESRSNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCNLNVDDTQENTEVLDLREKVKILEEERKNFEVQINSLSEENEACHEHLIEIENFAESLKESIDIAENRAESAEAKVTQLTETNMELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEAGQEQQNMLYTAIWDMEILIEELKSKVSKAEGNKDSAEEQCIMLSENNLELHKELDLFKSRMLCMKTSLDHASNTKLSSAKEIDTRTKFIMDLVMQLATERERINKQLDALKQENKSLVGKLKETKIGACNNGIINRNEDQASNIDSSNDSCTKSFDEEGMEHFNKTFQAEFIGIPTI