Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98588.t1 | XP_013455794.1 | 100 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.80E-76 | 295 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98588.t1 | Q949Q5 | 74.1 | 143 | 28 | 4 | 1 | 137 | 1 | 140 | 8.1e-54 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98588.t1 | I3SE13 | 100.0 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.3e-76 | 295.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene98588 | 0.802649 | 5.07E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene98588 | 0.827224 | 1.76E-54 | -1.69E-46 |
| MS.gene049173 | MS.gene98588 | 0.827601 | 1.43E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene98588 | 0.83516 | 1.97E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene98588 | 0.851727 | 7.35E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene98588 | 0.871454 | 6.75E-67 | -1.69E-46 |
| MS.gene049320 | MS.gene98588 | 0.900369 | 7.85E-78 | -1.69E-46 |
| MS.gene049369 | MS.gene98588 | 0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene98588 | 0.836518 | 8.93E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene98588 | 0.899855 | 1.31E-77 | -1.69E-46 |
| MS.gene049615 | MS.gene98588 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene98588 | 0.822936 | 1.81E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene98588 | 0.811635 | 6.34E-51 | -1.69E-46 |
| MS.gene049760 | MS.gene98588 | 0.803074 | 4.15E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene98588 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene049828 | MS.gene98588 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene050076 | MS.gene98588 | 0.833365 | 5.56E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene98588 | 0.83382 | 4.28E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene98588 | 0.868523 | 6.13E-66 | -1.69E-46 |
| MS.gene050165 | MS.gene98588 | 0.846451 | 2.15E-59 | -1.69E-46 |
| MS.gene050333 | MS.gene98588 | 0.836215 | 1.07E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene98588 | 0.881351 | 2.58E-70 | -1.69E-46 |
| MS.gene050504 | MS.gene98588 | 0.838328 | 3.07E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene98588 | 0.854237 | 1.41E-61 | -1.69E-46 |
| MS.gene050520 | MS.gene98588 | 0.820997 | 5.10E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene98588 | 0.840023 | 1.12E-57 | -1.69E-46 |
| MS.gene050593 | MS.gene98588 | 0.859635 | 3.61E-63 | -1.69E-46 |
| MS.gene050612 | MS.gene98588 | 0.855212 | 7.34E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene98588 | 0.853664 | 2.06E-61 | -1.69E-46 |
| MS.gene050686 | MS.gene98588 | 0.821948 | 3.08E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene98588 | 0.873886 | 1.04E-67 | -1.69E-46 |
| MS.gene050747 | MS.gene98588 | 0.842569 | 2.39E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene98588 | 0.879463 | 1.22E-69 | -1.69E-46 |
| MS.gene050770 | MS.gene98588 | 0.880024 | 7.71E-70 | -1.69E-46 |
| MS.gene050772 | MS.gene98588 | 0.918668 | 1.17E-86 | -1.69E-46 |
| MS.gene050783 | MS.gene98588 | 0.81253 | 4.05E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene98588 | 0.813657 | 2.29E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene98588 | 0.845417 | 4.11E-59 | -1.69E-46 |
| MS.gene050986 | MS.gene98588 | 0.877282 | 7.12E-69 | -1.69E-46 |
| MS.gene05100 | MS.gene98588 | 0.844246 | 8.51E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene98588 | 0.810752 | 9.86E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene98588 | 0.872053 | 4.27E-67 | -1.69E-46 |
| MS.gene051228 | MS.gene98588 | 0.867846 | 1.01E-65 | -1.69E-46 |
| MS.gene051387 | MS.gene98588 | 0.8282 | 1.03E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene98588 | 0.843519 | 1.33E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene98588 | 0.822676 | 2.09E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene98588 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene98588 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene98588 | 0.912023 | 3.13E-83 | -1.69E-46 |
| MS.gene051858 | MS.gene98588 | 0.837489 | 5.04E-57 | -1.69E-46 |
| MS.gene051949 | MS.gene98588 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene98588 | 0.874895 | 4.72E-68 | -1.69E-46 |
| MS.gene052290 | MS.gene98588 | 0.823472 | 1.36E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene98588 | 0.840434 | 8.72E-58 | -1.69E-46 |
| MS.gene052421 | MS.gene98588 | 0.82925 | 5.72E-55 | -1.69E-46 |
| MS.gene052481 | MS.gene98588 | 0.809699 | 1.66E-50 | -1.69E-46 |
| MS.gene052484 | MS.gene98588 | 0.838374 | 2.99E-57 | -1.69E-46 |
| MS.gene052508 | MS.gene98588 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene052510 | MS.gene98588 | 0.828988 | 6.62E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene98588 | 0.868785 | 5.04E-66 | -1.69E-46 |
| MS.gene052670 | MS.gene98588 | 0.842053 | 3.27E-58 | -1.69E-46 |
| MS.gene052916 | MS.gene98588 | 0.81814 | 2.29E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene98588 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene98588 | 0.873184 | 1.79E-67 | -1.69E-46 |
| MS.gene053103 | MS.gene98588 | 0.825793 | 3.86E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene98588 | 0.853543 | 2.23E-61 | -1.69E-46 |
| MS.gene053107 | MS.gene98588 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene98588 | 0.802311 | 5.96E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene98588 | 0.910555 | 1.64E-82 | -1.69E-46 |
| MS.gene053209 | MS.gene98588 | 0.866628 | 2.48E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene98588 | 0.916821 | 1.12E-85 | -1.69E-46 |
| MS.gene053286 | MS.gene98588 | 0.910037 | 2.93E-82 | -1.69E-46 |
| MS.gene053322 | MS.gene98588 | 0.8703 | 1.62E-66 | -1.69E-46 |
| MS.gene053436 | MS.gene98588 | 0.833233 | 6.00E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene98588 | 0.879848 | 8.91E-70 | -1.69E-46 |
| MS.gene053632 | MS.gene98588 | 0.868914 | 4.58E-66 | -1.69E-46 |
| MS.gene053813 | MS.gene98588 | 0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene98588 | 0.838049 | 3.62E-57 | -1.69E-46 |
| MS.gene054376 | MS.gene98588 | 0.875764 | 2.38E-68 | -1.69E-46 |
| MS.gene054408 | MS.gene98588 | 0.816539 | 5.25E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene98588 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene98588 | 0.893908 | 4.05E-75 | -1.69E-46 |
| MS.gene054642 | MS.gene98588 | 0.897783 | 1.01E-76 | -1.69E-46 |
| MS.gene054802 | MS.gene98588 | 0.83983 | 1.25E-57 | -1.69E-46 |
| MS.gene054803 | MS.gene98588 | 0.837159 | 6.13E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene98588 | 0.843077 | 1.75E-58 | -1.69E-46 |
| MS.gene054927 | MS.gene98588 | 0.838118 | 3.48E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene98588 | 0.835173 | 1.96E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene98588 | 0.855244 | 7.19E-62 | -1.69E-46 |
| MS.gene055116 | MS.gene98588 | 0.820487 | 6.68E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene98588 | 0.836496 | 9.05E-57 | -1.69E-46 |
| MS.gene055212 | MS.gene98588 | 0.843947 | 1.02E-58 | -1.69E-46 |
| MS.gene055254 | MS.gene98588 | 0.857852 | 1.23E-62 | -1.69E-46 |
| MS.gene055289 | MS.gene98588 | 0.848202 | 7.12E-60 | -1.69E-46 |
| MS.gene055362 | MS.gene98588 | 0.894408 | 2.54E-75 | -1.69E-46 |
| MS.gene055397 | MS.gene98588 | 0.857691 | 1.37E-62 | -1.69E-46 |
| MS.gene055412 | MS.gene98588 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene98588 | 0.899929 | 1.22E-77 | -1.69E-46 |
| MS.gene055502 | MS.gene98588 | 0.836324 | 1.00E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene98588 | 0.827041 | 1.95E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene98588 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene98588 | 0.811113 | 8.24E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene98588 | 0.86861 | 5.75E-66 | -1.69E-46 |
| MS.gene055722 | MS.gene98588 | 0.90339 | 3.64E-79 | -1.69E-46 |
| MS.gene05592 | MS.gene98588 | 0.904492 | 1.16E-79 | -1.69E-46 |
| MS.gene055941 | MS.gene98588 | 0.821114 | 4.80E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene98588 | -0.805653 | 1.20E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene98588 | 0.863453 | 2.46E-64 | -1.69E-46 |
| MS.gene056374 | MS.gene98588 | 0.893479 | 6.05E-75 | -1.69E-46 |
| MS.gene056487 | MS.gene98588 | 0.806959 | 6.38E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene98588 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene98588 | 0.804379 | 2.22E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene98588 | 0.814059 | 1.87E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene98588 | 0.888002 | 8.68E-73 | -1.69E-46 |
| MS.gene056692 | MS.gene98588 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene98588 | 0.820565 | 6.41E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene98588 | 0.834563 | 2.79E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene98588 | 0.847664 | 1.00E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene98588 | 0.810531 | 1.10E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene98588 | 0.90332 | 3.92E-79 | -1.69E-46 |
| MS.gene057146 | MS.gene98588 | 0.815963 | 7.06E-52 | -1.69E-46 |
| MS.gene057196 | MS.gene98588 | 0.80302 | 4.26E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene98588 | 0.926061 | 7.86E-91 | -1.69E-46 |
| MS.gene05735 | MS.gene98588 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene98588 | 0.897507 | 1.31E-76 | -1.69E-46 |
| MS.gene057926 | MS.gene98588 | 0.804857 | 1.77E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene98588 | 0.832596 | 8.64E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene98588 | 0.855707 | 5.27E-62 | -1.69E-46 |
| MS.gene058130 | MS.gene98588 | 0.8484 | 6.28E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene98588 | 0.834994 | 2.17E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene98588 | 0.866325 | 3.10E-65 | -1.69E-46 |
| MS.gene05837 | MS.gene98588 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene98588 | 0.883401 | 4.63E-71 | -1.69E-46 |
| MS.gene058544 | MS.gene98588 | 0.839323 | 1.70E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene98588 | 0.809712 | 1.65E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene98588 | 0.896964 | 2.22E-76 | -1.69E-46 |
| MS.gene058773 | MS.gene98588 | 0.865016 | 8.02E-65 | -1.69E-46 |
| MS.gene058838 | MS.gene98588 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene98588 | 0.811121 | 8.20E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene98588 | 0.86639 | 2.95E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene98588 | 0.81174 | 6.02E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene98588 | 0.871482 | 6.61E-67 | -1.69E-46 |
| MS.gene05913 | MS.gene98588 | 0.821735 | 3.45E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene98588 | 0.811965 | 5.38E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene98588 | 0.84254 | 2.43E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene98588 | 0.877449 | 6.23E-69 | -1.69E-46 |
| MS.gene059688 | MS.gene98588 | 0.843874 | 1.07E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene98588 | 0.846002 | 2.86E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene98588 | 0.848184 | 7.21E-60 | -1.69E-46 |
| MS.gene059711 | MS.gene98588 | 0.821844 | 3.25E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene98588 | 0.887926 | 9.29E-73 | -1.69E-46 |
| MS.gene059756 | MS.gene98588 | 0.807967 | 3.90E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene98588 | 0.824182 | 9.27E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene98588 | 0.822843 | 1.91E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene98588 | 0.83522 | 1.90E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene98588 | 0.869765 | 2.42E-66 | -1.69E-46 |
| MS.gene060193 | MS.gene98588 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene060356 | MS.gene98588 | 0.836283 | 1.02E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene98588 | 0.817866 | 2.64E-52 | -1.69E-46 |
| MS.gene060728 | MS.gene98588 | 0.807841 | 4.15E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene98588 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene98588 | 0.816165 | 6.37E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene98588 | 0.869042 | 4.16E-66 | -1.69E-46 |
| MS.gene060818 | MS.gene98588 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene98588 | 0.850019 | 2.23E-60 | -1.69E-46 |
| MS.gene060837 | MS.gene98588 | 0.825555 | 4.40E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene98588 | 0.868016 | 8.93E-66 | -1.69E-46 |
| MS.gene061041 | MS.gene98588 | 0.829251 | 5.71E-55 | -1.69E-46 |
| MS.gene061134 | MS.gene98588 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene98588 | 0.850172 | 2.02E-60 | -1.69E-46 |
| MS.gene061171 | MS.gene98588 | 0.813037 | 3.13E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene98588 | 0.878328 | 3.07E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98588 | MS.gene024386 | PPI |
| MS.gene98588 | MS.gene22752 | PPI |
| MS.gene98588 | MS.gene38715 | PPI |
| MS.gene98588 | MS.gene054642 | PPI |
| MS.gene48506 | MS.gene98588 | PPI |
| MS.gene98588 | MS.gene012982 | PPI |
| MS.gene98588 | MS.gene025854 | PPI |
| MS.gene039151 | MS.gene98588 | PPI |
| MS.gene98588 | MS.gene050699 | PPI |
| MS.gene040618 | MS.gene98588 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98588.t1 | MTR_4g052420 | 100.000 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.04e-99 | 282 |
| MS.gene98588.t1 | MTR_4g052420 | 99.281 | 139 | 0 | 1 | 1 | 139 | 1 | 138 | 3.23e-97 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98588.t1 | AT1G08380 | 74.126 | 143 | 28 | 4 | 1 | 137 | 1 | 140 | 4.11e-67 | 199 |
Find 49 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCAATGTGATTGGATT+TGG | 0.225162 | 4.2:+49785148 | MS.gene98588:CDS |
| CTGTTCATCTCTCTCACTTT+TGG | 0.231594 | 4.2:+49786509 | MS.gene98588:CDS |
| TCCTTCCTTTGAAACCAATT+TGG | 0.248618 | 4.2:-49786532 | None:intergenic |
| CTGCTCTTACTTCACCCTTC+TGG | 0.272395 | 4.2:+49785281 | MS.gene98588:CDS |
| ATGGCTGATCTGTTGGCACC+TGG | 0.325103 | 4.2:+49786484 | MS.gene98588:CDS |
| GTGATTGGATTTGGGTTGAT+AGG | 0.341850 | 4.2:+49785157 | MS.gene98588:CDS |
| ATTTCAATGTGATTGGATTT+GGG | 0.350561 | 4.2:+49785149 | MS.gene98588:CDS |
| AGGAGGGATTTCAATGTGAT+TGG | 0.352292 | 4.2:+49785142 | MS.gene98588:CDS |
| GAAGTAAGAGCAGGAGGAGT+AGG | 0.358016 | 4.2:-49785271 | None:intergenic |
| TTGGATTTGGGTTGATAGGT+TGG | 0.379649 | 4.2:+49785161 | MS.gene98588:CDS |
| CCCTCCTCAGCCAATCCCTT+TGG | 0.395602 | 4.2:-49785126 | None:intergenic |
| TCTATAGCTGGTATGCTTGA+TGG | 0.430936 | 4.2:-49785190 | None:intergenic |
| AAGTAAGAGCAGGAGGAGTA+GGG | 0.437703 | 4.2:-49785270 | None:intergenic |
| TGGCTGATCTGTTGGCACCT+GGG | 0.454791 | 4.2:+49786485 | MS.gene98588:CDS |
| GCCAAATTGGTTTCAAAGGA+AGG | 0.457172 | 4.2:+49786531 | MS.gene98588:CDS |
| ATTTGGGTTGATAGGTTGGT+TGG | 0.470446 | 4.2:+49785165 | MS.gene98588:CDS |
| CAAGCTATGGCACTTGGAAA+TGG | 0.471234 | 4.2:+49784762 | MS.gene98588:CDS |
| AGTGCCATAGCTTGCTTCAA+AGG | 0.477357 | 4.2:-49784753 | None:intergenic |
| TTGAAGCAAGCTATGGCACT+TGG | 0.478115 | 4.2:+49784756 | MS.gene98588:CDS |
| ACAACCTTTCCAACCGTCCT+AGG | 0.481448 | 4.2:+49784592 | MS.gene98588:CDS |
| GGCTGATCTGTTGGCACCTG+GGG | 0.482909 | 4.2:+49786486 | MS.gene98588:CDS |
| TCAAGCATACCAGCTATAGA+TGG | 0.485882 | 4.2:+49785193 | MS.gene98588:CDS |
| TGAAACCTCAAGTGATTGCT+AGG | 0.491174 | 4.2:+49784727 | MS.gene98588:CDS |
| TTTGGCCAAATTGGTTTCAA+AGG | 0.491678 | 4.2:+49786527 | MS.gene98588:CDS |
| TCCAAAGGGATTGGCTGAGG+AGG | 0.519342 | 4.2:+49785125 | MS.gene98588:CDS |
| GGTGCATCACGTCTCACCTC+AGG | 0.521677 | 4.2:+49784622 | MS.gene98588:CDS |
| GCAGGTTATGGCTGATCTGT+TGG | 0.521700 | 4.2:+49786477 | MS.gene98588:intron |
| TGAGAGAGATGAACAGCCCC+AGG | 0.530883 | 4.2:-49786502 | None:intergenic |
| CCAACCGTCCTAGGAATGGC+TGG | 0.539875 | 4.2:+49784601 | MS.gene98588:CDS |
| CCAGCCATTCCTAGGACGGT+TGG | 0.541005 | 4.2:-49784601 | None:intergenic |
| GTGATGCACCAGCCATTCCT+AGG | 0.542585 | 4.2:-49784609 | None:intergenic |
| ATAGATGGTAAAAGTCTGAC+TGG | 0.543316 | 4.2:+49785208 | MS.gene98588:CDS |
| ATAGTAGCTTCCAAAGGGAT+TGG | 0.543759 | 4.2:+49785116 | MS.gene98588:intron |
| GGATTCCTAGCAATCACTTG+AGG | 0.550278 | 4.2:-49784732 | None:intergenic |
| GCTATGGCACTTGGAAATGG+TGG | 0.550754 | 4.2:+49784765 | MS.gene98588:CDS |
| CCAAAGGGATTGGCTGAGGA+GGG | 0.551644 | 4.2:+49785126 | MS.gene98588:CDS |
| CAGAAGGGTGAAGTAAGAGC+AGG | 0.557629 | 4.2:-49785280 | None:intergenic |
| CTTTCCAACCGTCCTAGGAA+TGG | 0.566203 | 4.2:+49784597 | MS.gene98588:CDS |
| GGTGTATAGTAGCTTCCAAA+GGG | 0.571319 | 4.2:+49785111 | MS.gene98588:intron |
| CATTCCTAGGACGGTTGGAA+AGG | 0.571757 | 4.2:-49784596 | None:intergenic |
| GAATCCTTTGAAGCAAGCTA+TGG | 0.575832 | 4.2:+49784749 | MS.gene98588:CDS |
| GCTTCCAAAGGGATTGGCTG+AGG | 0.582802 | 4.2:+49785122 | MS.gene98588:CDS |
| TGGTGTATAGTAGCTTCCAA+AGG | 0.596452 | 4.2:+49785110 | MS.gene98588:intron |
| CTATGGCACTTGGAAATGGT+GGG | 0.605091 | 4.2:+49784766 | MS.gene98588:CDS |
| AAGGGTGAAGTAAGAGCAGG+AGG | 0.608022 | 4.2:-49785277 | None:intergenic |
| TGCACCAGCCATTCCTAGGA+CGG | 0.612860 | 4.2:-49784605 | None:intergenic |
| GAAATGGTGGGAGAGTTACA+TGG | 0.656018 | 4.2:+49784778 | MS.gene98588:CDS |
| ATGAAAACGACTAACCAGAA+GGG | 0.666036 | 4.2:-49785295 | None:intergenic |
| TGGTTTCAAAGGAAGGACTG+AGG | 0.666404 | 4.2:+49786538 | MS.gene98588:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAAAGAAAAGAAA+AGG | + | chr4.2:49786234-49786253 | MS.gene98588:intron | 10.0% |
| !! | TGATCAAATATATAAATTAT+TGG | + | chr4.2:49785427-49785446 | MS.gene98588:intron | 10.0% |
| !!! | TTCATTTTATTTATTTAAGT+CGG | + | chr4.2:49785339-49785358 | MS.gene98588:intron | 10.0% |
| !!! | TTGCATTTAAATATATTTTT+TGG | + | chr4.2:49786421-49786440 | MS.gene98588:intron | 10.0% |
| !!! | TTTTATTTTTATTTTTATGG+TGG | - | chr4.2:49785875-49785894 | None:intergenic | 10.0% |
| !! | AAATTAAATCCATAAAGTTT+AGG | + | chr4.2:49786035-49786054 | MS.gene98588:intron | 15.0% |
| !!! | TATGATTATTTTCATTAACT+TGG | - | chr4.2:49785627-49785646 | None:intergenic | 15.0% |
| !!! | TCCATATGAATATTTATTTT+CGG | + | chr4.2:49784856-49784875 | MS.gene98588:intron | 15.0% |
| !!! | TTCTTTAATTTTATTCATCT+CGG | - | chr4.2:49786265-49786284 | None:intergenic | 15.0% |
| !!! | TTTAATTGTAATTTGTTTGT+AGG | + | chr4.2:49784699-49784718 | MS.gene98588:intron | 15.0% |
| !!! | TTTTTTTTTCTAACAATCTA+TGG | - | chr4.2:49786017-49786036 | None:intergenic | 15.0% |
| !! | AAATAAATTGTATCCATTGT+TGG | - | chr4.2:49785967-49785986 | None:intergenic | 20.0% |
| !! | GAACTTTAACAAAAAAAATC+TGG | + | chr4.2:49786164-49786183 | MS.gene98588:intron | 20.0% |
| !! | TGCTAATGAGAAATTATAAA+TGG | + | chr4.2:49786138-49786157 | MS.gene98588:intron | 20.0% |
| !!! | ACAATGGATACAATTTATTT+TGG | + | chr4.2:49785967-49785986 | MS.gene98588:intron | 20.0% |
| !!! | ATTTTTATTTTTATGGTGGT+CGG | - | chr4.2:49785871-49785890 | None:intergenic | 20.0% |
| !!! | CATTATTTTGTGAATTGTTA+TGG | + | chr4.2:49785073-49785092 | MS.gene98588:intron | 20.0% |
| !!! | CTATAAGATTGGTTTTTATA+TGG | + | chr4.2:49784810-49784829 | MS.gene98588:intron | 20.0% |
| !!! | GGTAATTTTTACTATAAGAT+TGG | + | chr4.2:49784799-49784818 | MS.gene98588:intron | 20.0% |
| !!! | TAAATGGGGTATTAAAAAAT+TGG | - | chr4.2:49785557-49785576 | None:intergenic | 20.0% |
| ! | AAAGAACTTGTGACTTAAAT+GGG | - | chr4.2:49785572-49785591 | None:intergenic | 25.0% |
| ! | ATATTTGATCATTCCTTACA+TGG | - | chr4.2:49785418-49785437 | None:intergenic | 25.0% |
| ! | ATTTCAATGTGATTGGATTT+GGG | + | chr4.2:49785149-49785168 | MS.gene98588:CDS | 25.0% |
| ! | GCCGAAAATAAATATTCATA+TGG | - | chr4.2:49784860-49784879 | None:intergenic | 25.0% |
| ! | TAAAGAACTTGTGACTTAAA+TGG | - | chr4.2:49785573-49785592 | None:intergenic | 25.0% |
| ! | TATAAATTATTGGCATCTAG+AGG | + | chr4.2:49785437-49785456 | MS.gene98588:intron | 25.0% |
| ! | TCAGTTTATATTATATCCGT+CGG | - | chr4.2:49786381-49786400 | None:intergenic | 25.0% |
| ! | TCATATTTCACGTGATTAAA+CGG | - | chr4.2:49784962-49784981 | None:intergenic | 25.0% |
| ! | TCTAACAGACAATTAAAACA+AGG | + | chr4.2:49785492-49785511 | MS.gene98588:intron | 25.0% |
| ! | TTATTAGCACCTAAACTTTA+TGG | - | chr4.2:49786047-49786066 | None:intergenic | 25.0% |
| !! | GTAAAATTTTACACCAACAA+TGG | + | chr4.2:49785951-49785970 | MS.gene98588:intron | 25.0% |
| !! | TTCAAAAGCAGTTTTTGTTA+AGG | - | chr4.2:49786209-49786228 | None:intergenic | 25.0% |
| !!! | TTTAATTTTATTCATCTCGG+TGG | - | chr4.2:49786262-49786281 | None:intergenic | 25.0% |
| AAGAACTTGTGACTTAAATG+GGG | - | chr4.2:49785571-49785590 | None:intergenic | 30.0% | |
| CAATGAAAATATGAAGTCGA+AGG | + | chr4.2:49785703-49785722 | MS.gene98588:intron | 30.0% | |
| GATTTCAATGTGATTGGATT+TGG | + | chr4.2:49785148-49785167 | MS.gene98588:CDS | 30.0% | |
| TGAATTGTTATGGCATGTTA+TGG | + | chr4.2:49785083-49785102 | MS.gene98588:intron | 30.0% | |
| ! | TGGGGTATTAAAAAATTGGA+AGG | - | chr4.2:49785553-49785572 | None:intergenic | 30.0% |
| AATCGGAACAAAACCATGTA+AGG | + | chr4.2:49785402-49785421 | MS.gene98588:intron | 35.0% | |
| ATAGATGGTAAAAGTCTGAC+TGG | + | chr4.2:49785208-49785227 | MS.gene98588:CDS | 35.0% | |
| ATCAATCCTACCGTCTAAAT+CGG | + | chr4.2:49785385-49785404 | MS.gene98588:intron | 35.0% | |
| ATGAAAACGACTAACCAGAA+GGG | - | chr4.2:49785298-49785317 | None:intergenic | 35.0% | |
| ATGATGAATTGAGCAGGTTA+TGG | + | chr4.2:49786465-49786484 | MS.gene98588:intron | 35.0% | |
| ATTTCTAACAAACGGTTCCA+TGG | - | chr4.2:49786356-49786375 | None:intergenic | 35.0% | |
| CGTCGGTAATTTCTAACAAA+CGG | - | chr4.2:49786364-49786383 | None:intergenic | 35.0% | |
| GTTAATGATCATGATACCTG+AGG | - | chr4.2:49784641-49784660 | None:intergenic | 35.0% | |
| TCAAACATGATGAATTGAGC+AGG | + | chr4.2:49786459-49786478 | MS.gene98588:intron | 35.0% | |
| TTATGGCATGTTATGGCATA+TGG | + | chr4.2:49785090-49785109 | MS.gene98588:intron | 35.0% | |
| ! | AGACTTTTACCATCTATAGC+TGG | - | chr4.2:49785205-49785224 | None:intergenic | 35.0% |
| ! | CGTTTGTTAGAAATTACCGA+CGG | + | chr4.2:49786362-49786381 | MS.gene98588:intron | 35.0% |
| ! | TTTGGCCAAATTGGTTTCAA+AGG | + | chr4.2:49786527-49786546 | MS.gene98588:CDS | 35.0% |
| !! | GGACTTTTCTTTGATAGCAT+TGG | + | chr4.2:49785229-49785248 | MS.gene98588:CDS | 35.0% |
| !! | TCCTTCCTTTGAAACCAATT+TGG | - | chr4.2:49786535-49786554 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTTCCGATTTAGA+CGG | - | chr4.2:49785398-49785417 | None:intergenic | 35.0% |
| !!! | TTATTTTTATGGTGGTCGGT+CGG | - | chr4.2:49785867-49785886 | None:intergenic | 35.0% |
| AAGTCGAAGGAATCAGTTAG+AGG | + | chr4.2:49785716-49785735 | MS.gene98588:intron | 40.0% | |
| AGGAGGGATTTCAATGTGAT+TGG | + | chr4.2:49785142-49785161 | MS.gene98588:CDS | 40.0% | |
| ATAGTAGCTTCCAAAGGGAT+TGG | + | chr4.2:49785116-49785135 | MS.gene98588:intron | 40.0% | |
| GATGAAAACGACTAACCAGA+AGG | - | chr4.2:49785299-49785318 | None:intergenic | 40.0% | |
| GGTGTATAGTAGCTTCCAAA+GGG | + | chr4.2:49785111-49785130 | MS.gene98588:intron | 40.0% | |
| TCAAGCATACCAGCTATAGA+TGG | + | chr4.2:49785193-49785212 | MS.gene98588:CDS | 40.0% | |
| TCTATAGCTGGTATGCTTGA+TGG | - | chr4.2:49785193-49785212 | None:intergenic | 40.0% | |
| TGAAACCTCAAGTGATTGCT+AGG | + | chr4.2:49784727-49784746 | MS.gene98588:CDS | 40.0% | |
| TGGTGTATAGTAGCTTCCAA+AGG | + | chr4.2:49785110-49785129 | MS.gene98588:intron | 40.0% | |
| TTTGTTCCGATTTAGACGGT+AGG | - | chr4.2:49785394-49785413 | None:intergenic | 40.0% | |
| ! | CTGTTCATCTCTCTCACTTT+TGG | + | chr4.2:49786509-49786528 | MS.gene98588:CDS | 40.0% |
| ! | GCCAAATTGGTTTCAAAGGA+AGG | + | chr4.2:49786531-49786550 | MS.gene98588:CDS | 40.0% |
| ! | TGAGCTTATCTCAGTTGGTA+GGG | + | chr4.2:49785804-49785823 | MS.gene98588:intron | 40.0% |
| !! | ATTTGGGTTGATAGGTTGGT+TGG | + | chr4.2:49785165-49785184 | MS.gene98588:CDS | 40.0% |
| !! | GAATCCTTTGAAGCAAGCTA+TGG | + | chr4.2:49784749-49784768 | MS.gene98588:CDS | 40.0% |
| !! | GTGATTGGATTTGGGTTGAT+AGG | + | chr4.2:49785157-49785176 | MS.gene98588:CDS | 40.0% |
| !! | TATTTTTATGGTGGTCGGTC+GGG | - | chr4.2:49785866-49785885 | None:intergenic | 40.0% |
| !! | TCTCTCACTTTTGGCCAAAT+TGG | + | chr4.2:49786518-49786537 | MS.gene98588:CDS | 40.0% |
| !! | TTGGATTTGGGTTGATAGGT+TGG | + | chr4.2:49785161-49785180 | MS.gene98588:CDS | 40.0% |
| AAGTAAGAGCAGGAGGAGTA+GGG | - | chr4.2:49785273-49785292 | None:intergenic | 45.0% | |
| AGTAACCCGAGTTCAAGTCT+CGG | - | chr4.2:49786302-49786321 | None:intergenic | 45.0% | |
| CAAGCTATGGCACTTGGAAA+TGG | + | chr4.2:49784762-49784781 | MS.gene98588:CDS | 45.0% | |
| CATCGTGAGCTTATCTCAGT+TGG | + | chr4.2:49785799-49785818 | MS.gene98588:intron | 45.0% | |
| CTATGGCACTTGGAAATGGT+GGG | + | chr4.2:49784766-49784785 | MS.gene98588:CDS | 45.0% | |
| GGATTCCTAGCAATCACTTG+AGG | - | chr4.2:49784735-49784754 | None:intergenic | 45.0% | |
| GTGAGCTTATCTCAGTTGGT+AGG | + | chr4.2:49785803-49785822 | MS.gene98588:intron | 45.0% | |
| TGGTTTCAAAGGAAGGACTG+AGG | + | chr4.2:49786538-49786557 | MS.gene98588:CDS | 45.0% | |
| TTGAAGCAAGCTATGGCACT+TGG | + | chr4.2:49784756-49784775 | MS.gene98588:CDS | 45.0% | |
| ! | ATTTTTATGGTGGTCGGTCG+GGG | - | chr4.2:49785865-49785884 | None:intergenic | 45.0% |
| ! | GAAATGGTGGGAGAGTTACA+TGG | + | chr4.2:49784778-49784797 | MS.gene98588:CDS | 45.0% |
| !! | AGTGCCATAGCTTGCTTCAA+AGG | - | chr4.2:49784756-49784775 | None:intergenic | 45.0% |
| !!! | AAACATTTTTTTTTTATTAA+TGG | + | chr4.2:49786092-49786111 | MS.gene98588:intron | 5.0% |
| !!! | AACATTTTTTTTTTATTAAT+GGG | + | chr4.2:49786093-49786112 | MS.gene98588:intron | 5.0% |
| !!! | TAGTTTTATTTTTATTTTTA+TGG | - | chr4.2:49785878-49785897 | None:intergenic | 5.0% |
| AAGGGTGAAGTAAGAGCAGG+AGG | - | chr4.2:49785280-49785299 | None:intergenic | 50.0% | |
| ACAACCTTTCCAACCGTCCT+AGG | + | chr4.2:49784592-49784611 | MS.gene98588:CDS | 50.0% | |
| ATGTCCTAACCGCTAGACCA+TGG | + | chr4.2:49786336-49786355 | MS.gene98588:intron | 50.0% | |
| CAAACGGTTCCATGGTCTAG+CGG | - | chr4.2:49786348-49786367 | None:intergenic | 50.0% | |
| CAGAAGGGTGAAGTAAGAGC+AGG | - | chr4.2:49785283-49785302 | None:intergenic | 50.0% | |
| CATTCCTAGGACGGTTGGAA+AGG | - | chr4.2:49784599-49784618 | None:intergenic | 50.0% | |
| CTGCTCTTACTTCACCCTTC+TGG | + | chr4.2:49785281-49785300 | MS.gene98588:CDS | 50.0% | |
| CTTTCCAACCGTCCTAGGAA+TGG | + | chr4.2:49784597-49784616 | MS.gene98588:CDS | 50.0% | |
| GAAGTAAGAGCAGGAGGAGT+AGG | - | chr4.2:49785274-49785293 | None:intergenic | 50.0% | |
| GAGACTTGAACTCGGGTTAC+TGG | + | chr4.2:49786301-49786320 | MS.gene98588:intron | 50.0% | |
| GCAGGTTATGGCTGATCTGT+TGG | + | chr4.2:49786477-49786496 | MS.gene98588:intron | 50.0% | |
| GCTATGGCACTTGGAAATGG+TGG | + | chr4.2:49784765-49784784 | MS.gene98588:CDS | 50.0% | |
| GTTCCACCGAGACTTGAACT+CGG | + | chr4.2:49786293-49786312 | MS.gene98588:intron | 50.0% | |
| TGGTCTAGCGGTTAGGACAT+TGG | - | chr4.2:49786336-49786355 | None:intergenic | 50.0% | |
| TTCCACCGAGACTTGAACTC+GGG | + | chr4.2:49786294-49786313 | MS.gene98588:intron | 50.0% | |
| AACCCGAGTTCAAGTCTCGG+TGG | - | chr4.2:49786299-49786318 | None:intergenic | 55.0% | |
| ATGGCTGATCTGTTGGCACC+TGG | + | chr4.2:49786484-49786503 | MS.gene98588:CDS | 55.0% | |
| GGTTCCATGGTCTAGCGGTT+AGG | - | chr4.2:49786343-49786362 | None:intergenic | 55.0% | |
| GTGATGCACCAGCCATTCCT+AGG | - | chr4.2:49784612-49784631 | None:intergenic | 55.0% | |
| TGAGAGAGATGAACAGCCCC+AGG | - | chr4.2:49786505-49786524 | None:intergenic | 55.0% | |
| TGCACCAGCCATTCCTAGGA+CGG | - | chr4.2:49784608-49784627 | None:intergenic | 55.0% | |
| TGGCTGATCTGTTGGCACCT+GGG | + | chr4.2:49786485-49786504 | MS.gene98588:CDS | 55.0% | |
| !! | CCAAAGGGATTGGCTGAGGA+GGG | + | chr4.2:49785126-49785145 | MS.gene98588:CDS | 55.0% |
| !! | GCTTCCAAAGGGATTGGCTG+AGG | + | chr4.2:49785122-49785141 | MS.gene98588:CDS | 55.0% |
| !! | TCCAAAGGGATTGGCTGAGG+AGG | + | chr4.2:49785125-49785144 | MS.gene98588:CDS | 55.0% |
| CCAACCGTCCTAGGAATGGC+TGG | + | chr4.2:49784601-49784620 | MS.gene98588:CDS | 60.0% | |
| CCAGCCATTCCTAGGACGGT+TGG | - | chr4.2:49784604-49784623 | None:intergenic | 60.0% | |
| CCCTCCTCAGCCAATCCCTT+TGG | - | chr4.2:49785129-49785148 | None:intergenic | 60.0% | |
| GGCTGATCTGTTGGCACCTG+GGG | + | chr4.2:49786486-49786505 | MS.gene98588:CDS | 60.0% | |
| GGTGCATCACGTCTCACCTC+AGG | + | chr4.2:49784622-49784641 | MS.gene98588:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 49784583 | 49786577 | 49784583 | ID=MS.gene98588 |
| chr4.2 | mRNA | 49784583 | 49786577 | 49784583 | ID=MS.gene98588.t1;Parent=MS.gene98588 |
| chr4.2 | exon | 49784583 | 49784643 | 49784583 | ID=MS.gene98588.t1.exon1;Parent=MS.gene98588.t1 |
| chr4.2 | CDS | 49784583 | 49784643 | 49784583 | ID=cds.MS.gene98588.t1;Parent=MS.gene98588.t1 |
| chr4.2 | exon | 49784721 | 49784799 | 49784721 | ID=MS.gene98588.t1.exon2;Parent=MS.gene98588.t1 |
| chr4.2 | CDS | 49784721 | 49784799 | 49784721 | ID=cds.MS.gene98588.t1;Parent=MS.gene98588.t1 |
| chr4.2 | exon | 49785120 | 49785302 | 49785120 | ID=MS.gene98588.t1.exon3;Parent=MS.gene98588.t1 |
| chr4.2 | CDS | 49785120 | 49785302 | 49785120 | ID=cds.MS.gene98588.t1;Parent=MS.gene98588.t1 |
| chr4.2 | exon | 49786481 | 49786577 | 49786481 | ID=MS.gene98588.t1.exon4;Parent=MS.gene98588.t1 |
| chr4.2 | CDS | 49786481 | 49786577 | 49786481 | ID=cds.MS.gene98588.t1;Parent=MS.gene98588.t1 |
| Gene Sequence |
| Protein sequence |
