Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88194.t1 | XP_013455794.1 | 99.3 | 139 | 1 | 0 | 1 | 139 | 1 | 139 | 6.70E-76 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88194.t1 | Q949Q5 | 73.4 | 143 | 29 | 4 | 1 | 137 | 1 | 140 | 2.4e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88194.t1 | I3SE13 | 99.3 | 139 | 1 | 0 | 1 | 139 | 1 | 139 | 4.8e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene88194 | 0.816773 | 4.65E-52 | -1.69E-46 |
| MS.gene049173 | MS.gene88194 | 0.871631 | 5.90E-67 | -1.69E-46 |
| MS.gene049217 | MS.gene88194 | 0.832188 | 1.09E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene88194 | 0.832128 | 1.13E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene88194 | 0.853227 | 2.75E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene88194 | 0.868005 | 9.00E-66 | -1.69E-46 |
| MS.gene049369 | MS.gene88194 | 0.801678 | 8.04E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene88194 | 0.81368 | 2.26E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene88194 | 0.852617 | 4.10E-61 | -1.69E-46 |
| MS.gene049614 | MS.gene88194 | 0.833693 | 4.61E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene88194 | 0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene88194 | 0.819628 | 1.05E-52 | -1.69E-46 |
| MS.gene049828 | MS.gene88194 | 0.830727 | 2.49E-55 | -1.69E-46 |
| MS.gene050076 | MS.gene88194 | 0.829848 | 4.09E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene88194 | 0.862158 | 6.18E-64 | -1.69E-46 |
| MS.gene050165 | MS.gene88194 | 0.851057 | 1.14E-60 | -1.69E-46 |
| MS.gene050333 | MS.gene88194 | 0.832732 | 7.99E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene88194 | 0.841292 | 5.19E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene88194 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene88194 | 0.807821 | 4.19E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene88194 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene88194 | 0.82111 | 4.81E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene88194 | 0.831725 | 1.42E-55 | -1.69E-46 |
| MS.gene050686 | MS.gene88194 | 0.800348 | 1.50E-48 | -1.69E-46 |
| MS.gene050699 | MS.gene88194 | 0.836037 | 1.18E-56 | -1.69E-46 |
| MS.gene050767 | MS.gene88194 | 0.87218 | 3.88E-67 | -1.69E-46 |
| MS.gene050770 | MS.gene88194 | 0.874637 | 5.78E-68 | -1.69E-46 |
| MS.gene050772 | MS.gene88194 | 0.873195 | 1.77E-67 | -1.69E-46 |
| MS.gene050986 | MS.gene88194 | 0.844225 | 8.63E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene88194 | 0.84495 | 5.50E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene88194 | 0.820333 | 7.25E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene88194 | 0.826819 | 2.20E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene88194 | 0.88029 | 6.20E-70 | -1.69E-46 |
| MS.gene051551 | MS.gene88194 | 0.824368 | 8.38E-54 | -1.69E-46 |
| MS.gene051566 | MS.gene88194 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene88194 | 0.802413 | 5.68E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene88194 | 0.810671 | 1.03E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene88194 | 0.838219 | 3.28E-57 | -1.69E-46 |
| MS.gene051810 | MS.gene88194 | 0.900697 | 5.65E-78 | -1.69E-46 |
| MS.gene051858 | MS.gene88194 | 0.838936 | 2.14E-57 | -1.69E-46 |
| MS.gene051949 | MS.gene88194 | 0.838034 | 3.66E-57 | -1.69E-46 |
| MS.gene052271 | MS.gene88194 | 0.887907 | 9.45E-73 | -1.69E-46 |
| MS.gene052290 | MS.gene88194 | 0.859738 | 3.36E-63 | -1.69E-46 |
| MS.gene052379 | MS.gene88194 | 0.84356 | 1.30E-58 | -1.69E-46 |
| MS.gene052484 | MS.gene88194 | 0.832153 | 1.11E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene88194 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene88194 | 0.860579 | 1.87E-63 | -1.69E-46 |
| MS.gene053103 | MS.gene88194 | 0.82802 | 1.13E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene88194 | 0.843542 | 1.31E-58 | -1.69E-46 |
| MS.gene053207 | MS.gene88194 | 0.87157 | 6.18E-67 | -1.69E-46 |
| MS.gene053209 | MS.gene88194 | 0.85772 | 1.35E-62 | -1.69E-46 |
| MS.gene053213 | MS.gene88194 | 0.87168 | 5.68E-67 | -1.69E-46 |
| MS.gene053286 | MS.gene88194 | 0.862721 | 4.15E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene88194 | 0.868741 | 5.21E-66 | -1.69E-46 |
| MS.gene053574 | MS.gene88194 | 0.831864 | 1.31E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene88194 | 0.852664 | 3.98E-61 | -1.69E-46 |
| MS.gene053916 | MS.gene88194 | 0.807835 | 4.16E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene88194 | 0.867634 | 1.18E-65 | -1.69E-46 |
| MS.gene054600 | MS.gene88194 | 0.873312 | 1.62E-67 | -1.69E-46 |
| MS.gene054642 | MS.gene88194 | 0.87684 | 1.01E-68 | -1.69E-46 |
| MS.gene054802 | MS.gene88194 | 0.816087 | 6.63E-52 | -1.69E-46 |
| MS.gene054803 | MS.gene88194 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene88194 | 0.820915 | 5.33E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene88194 | 0.804319 | 2.29E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene88194 | 0.820875 | 5.44E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene88194 | 0.824071 | 9.85E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene88194 | 0.820747 | 5.82E-53 | -1.69E-46 |
| MS.gene055212 | MS.gene88194 | 0.871167 | 8.40E-67 | -1.69E-46 |
| MS.gene055254 | MS.gene88194 | 0.884666 | 1.58E-71 | -1.69E-46 |
| MS.gene055289 | MS.gene88194 | 0.800778 | 1.23E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene88194 | 0.872722 | 2.56E-67 | -1.69E-46 |
| MS.gene055397 | MS.gene88194 | 0.857672 | 1.39E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene88194 | 0.897938 | 8.65E-77 | -1.69E-46 |
| MS.gene055502 | MS.gene88194 | 0.820367 | 7.12E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene88194 | 0.803138 | 4.02E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene88194 | 0.830451 | 2.91E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene88194 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene88194 | 0.859131 | 5.11E-63 | -1.69E-46 |
| MS.gene055722 | MS.gene88194 | 0.890766 | 7.32E-74 | -1.69E-46 |
| MS.gene05592 | MS.gene88194 | 0.867933 | 9.50E-66 | -1.69E-46 |
| MS.gene055941 | MS.gene88194 | 0.809428 | 1.90E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene88194 | -0.806025 | 1.00E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene88194 | 0.853858 | 1.81E-61 | -1.69E-46 |
| MS.gene056374 | MS.gene88194 | 0.875911 | 2.12E-68 | -1.69E-46 |
| MS.gene056410 | MS.gene88194 | 0.828741 | 7.60E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene88194 | 0.848674 | 5.27E-60 | -1.69E-46 |
| MS.gene056611 | MS.gene88194 | 0.818673 | 1.73E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene88194 | 0.871772 | 5.30E-67 | -1.69E-46 |
| MS.gene056897 | MS.gene88194 | 0.824185 | 9.26E-54 | -1.69E-46 |
| MS.gene057076 | MS.gene88194 | 0.814509 | 1.49E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene88194 | 0.887563 | 1.28E-72 | -1.69E-46 |
| MS.gene057146 | MS.gene88194 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene057246 | MS.gene88194 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene057295 | MS.gene88194 | 0.827031 | 1.96E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene88194 | 0.873737 | 1.17E-67 | -1.69E-46 |
| MS.gene057416 | MS.gene88194 | 0.857097 | 2.06E-62 | -1.69E-46 |
| MS.gene057926 | MS.gene88194 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene88194 | 0.831563 | 1.55E-55 | -1.69E-46 |
| MS.gene058323 | MS.gene88194 | 0.811939 | 5.45E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene88194 | 0.862176 | 6.10E-64 | -1.69E-46 |
| MS.gene058544 | MS.gene88194 | 0.803017 | 4.26E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene88194 | 0.804556 | 2.04E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene88194 | 0.894538 | 2.24E-75 | -1.69E-46 |
| MS.gene058773 | MS.gene88194 | 0.852346 | 4.90E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene88194 | 0.858216 | 9.60E-63 | -1.69E-46 |
| MS.gene059029 | MS.gene88194 | 0.860246 | 2.36E-63 | -1.69E-46 |
| MS.gene05913 | MS.gene88194 | 0.844727 | 6.32E-59 | -1.69E-46 |
| MS.gene05934 | MS.gene88194 | 0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene88194 | 0.846552 | 2.02E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene88194 | 0.861994 | 6.93E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene88194 | 0.81518 | 1.06E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene88194 | 0.830534 | 2.78E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene88194 | 0.831017 | 2.12E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene88194 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene88194 | 0.855282 | 7.00E-62 | -1.69E-46 |
| MS.gene059858 | MS.gene88194 | 0.856208 | 3.76E-62 | -1.69E-46 |
| MS.gene059865 | MS.gene88194 | 0.805324 | 1.41E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene88194 | 0.836819 | 7.48E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene88194 | 0.849231 | 3.69E-60 | -1.69E-46 |
| MS.gene060341 | MS.gene88194 | 0.836232 | 1.06E-56 | -1.69E-46 |
| MS.gene060356 | MS.gene88194 | 0.830738 | 2.48E-55 | -1.69E-46 |
| MS.gene060727 | MS.gene88194 | 0.824309 | 8.65E-54 | -1.69E-46 |
| MS.gene060728 | MS.gene88194 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene88194 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene88194 | 0.86508 | 7.65E-65 | -1.69E-46 |
| MS.gene060818 | MS.gene88194 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene88194 | 0.806799 | 6.90E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene88194 | 0.848376 | 6.38E-60 | -1.69E-46 |
| MS.gene061150 | MS.gene88194 | 0.822054 | 2.91E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene88194 | 0.872088 | 4.16E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88194 | MS.gene012982 | PPI |
| MS.gene039151 | MS.gene88194 | PPI |
| MS.gene040618 | MS.gene88194 | PPI |
| MS.gene054642 | MS.gene88194 | PPI |
| MS.gene88194 | MS.gene050699 | PPI |
| MS.gene88194 | MS.gene024386 | PPI |
| MS.gene88194 | MS.gene22752 | PPI |
| MS.gene48506 | MS.gene88194 | PPI |
| MS.gene88194 | MS.gene38715 | PPI |
| MS.gene025854 | MS.gene88194 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88194.t1 | MTR_4g052420 | 99.281 | 139 | 1 | 0 | 1 | 139 | 1 | 139 | 5.16e-99 | 280 |
| MS.gene88194.t1 | MTR_4g052420 | 98.561 | 139 | 1 | 1 | 1 | 139 | 1 | 138 | 1.50e-96 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88194.t1 | AT1G08380 | 75.373 | 134 | 26 | 3 | 8 | 137 | 10 | 140 | 1.73e-66 | 198 |
Find 49 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCAATGTGATTGGATT+TGG | 0.225162 | 4.4:+50155598 | MS.gene88194:CDS |
| CTGTTCATCTCTCTCACTTT+TGG | 0.231594 | 4.4:+50157001 | MS.gene88194:CDS |
| TCCTTCCTTTGAAACCAATT+TGG | 0.248618 | 4.4:-50157024 | None:intergenic |
| CTGCTCTTACTTCACCCTTC+TGG | 0.272395 | 4.4:+50155731 | MS.gene88194:CDS |
| ATGGCTGATCTGTTGGCACC+TGG | 0.325103 | 4.4:+50156976 | MS.gene88194:CDS |
| GTGATTGGATTTGGGTTGAT+AGG | 0.341850 | 4.4:+50155607 | MS.gene88194:CDS |
| AGGAGGGATTTCAATGTGAT+TGG | 0.348694 | 4.4:+50155592 | MS.gene88194:CDS |
| ATTTCAATGTGATTGGATTT+GGG | 0.350561 | 4.4:+50155599 | MS.gene88194:CDS |
| GAAGTAAGAGCAGGAGGAGT+AGG | 0.358016 | 4.4:-50155721 | None:intergenic |
| TTGGATTTGGGTTGATAGGT+TGG | 0.379649 | 4.4:+50155611 | MS.gene88194:CDS |
| CCCTCCTTAGCCAATCCCTT+TGG | 0.402956 | 4.4:-50155576 | None:intergenic |
| TCTATAGCTGGTATGCTTGA+TGG | 0.430936 | 4.4:-50155640 | None:intergenic |
| AAGTAAGAGCAGGAGGAGTA+GGG | 0.437703 | 4.4:-50155720 | None:intergenic |
| ACAACCTTTCCGACCGTCCT+AGG | 0.447426 | 4.4:+50155038 | MS.gene88194:CDS |
| TGGCTGATCTGTTGGCACCT+GGG | 0.454791 | 4.4:+50156977 | MS.gene88194:CDS |
| GCCAAATTGGTTTCAAAGGA+AGG | 0.457172 | 4.4:+50157023 | MS.gene88194:CDS |
| ATTTGGGTTGATAGGTTGGT+TGG | 0.470446 | 4.4:+50155615 | MS.gene88194:CDS |
| CAAGCTATGGCACTTGGAAA+TGG | 0.471234 | 4.4:+50155212 | MS.gene88194:CDS |
| AGTGCCATAGCTTGCTTCAA+AGG | 0.477357 | 4.4:-50155203 | None:intergenic |
| TTGAAGCAAGCTATGGCACT+TGG | 0.478115 | 4.4:+50155206 | MS.gene88194:CDS |
| GGCTGATCTGTTGGCACCTG+GGG | 0.482909 | 4.4:+50156978 | MS.gene88194:CDS |
| TCAAGCATACCAGCTATAGA+TGG | 0.485882 | 4.4:+50155643 | MS.gene88194:CDS |
| TTTGGCCAAATTGGTTTCAA+AGG | 0.491678 | 4.4:+50157019 | MS.gene88194:CDS |
| TGAAACCACAAGTGATTGCT+AGG | 0.500689 | 4.4:+50155177 | MS.gene88194:CDS |
| GGTGCATCACGTCTCACCTC+AGG | 0.521677 | 4.4:+50155068 | MS.gene88194:CDS |
| GCAGGTTATGGCTGATCTGT+TGG | 0.521700 | 4.4:+50156969 | MS.gene88194:intron |
| CCGACCGTCCTAGGAATGGC+TGG | 0.522391 | 4.4:+50155047 | MS.gene88194:CDS |
| TGAGAGAGATGAACAGCCCC+AGG | 0.530883 | 4.4:-50156994 | None:intergenic |
| ATAGTAGCTTCCAAAGGGAT+TGG | 0.537863 | 4.4:+50155566 | MS.gene88194:intron |
| GTGATGCACCAGCCATTCCT+AGG | 0.542585 | 4.4:-50155055 | None:intergenic |
| ATAGATGGTAAAAGTCTGAC+TGG | 0.543316 | 4.4:+50155658 | MS.gene88194:CDS |
| TCCAAAGGGATTGGCTAAGG+AGG | 0.546070 | 4.4:+50155575 | MS.gene88194:CDS |
| GCTATGGCACTTGGAAATGG+TGG | 0.550754 | 4.4:+50155215 | MS.gene88194:CDS |
| GGATTCCTAGCAATCACTTG+TGG | 0.557103 | 4.4:-50155182 | None:intergenic |
| CAGAAGGGTGAAGTAAGAGC+AGG | 0.557629 | 4.4:-50155730 | None:intergenic |
| GGTGTATAGTAGCTTCCAAA+GGG | 0.571319 | 4.4:+50155561 | MS.gene88194:intron |
| GCTTCCAAAGGGATTGGCTA+AGG | 0.571506 | 4.4:+50155572 | MS.gene88194:CDS |
| GAATCCTTTGAAGCAAGCTA+TGG | 0.575832 | 4.4:+50155199 | MS.gene88194:CDS |
| CCAAAGGGATTGGCTAAGGA+GGG | 0.576763 | 4.4:+50155576 | MS.gene88194:CDS |
| CTTTCCGACCGTCCTAGGAA+TGG | 0.576880 | 4.4:+50155043 | MS.gene88194:CDS |
| TGGTGTATAGTAGCTTCCAA+AGG | 0.596452 | 4.4:+50155560 | MS.gene88194:intron |
| CATTCCTAGGACGGTCGGAA+AGG | 0.598523 | 4.4:-50155042 | None:intergenic |
| CCAGCCATTCCTAGGACGGT+CGG | 0.605049 | 4.4:-50155047 | None:intergenic |
| CTATGGCACTTGGAAATGGT+GGG | 0.605091 | 4.4:+50155216 | MS.gene88194:CDS |
| AAGGGTGAAGTAAGAGCAGG+AGG | 0.608022 | 4.4:-50155727 | None:intergenic |
| TGCACCAGCCATTCCTAGGA+CGG | 0.615300 | 4.4:-50155051 | None:intergenic |
| GAAATGGTGGGAGAGTTACA+TGG | 0.656018 | 4.4:+50155228 | MS.gene88194:CDS |
| TGGTTTCAAAGGAAGGACTG+AGG | 0.666404 | 4.4:+50157030 | MS.gene88194:CDS |
| ATGAAAATGACTAACCAGAA+GGG | 0.671062 | 4.4:-50155745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATCAAATATATAAATTAT+TGG | + | chr4.4:50155877-50155896 | MS.gene88194:intron | 10.0% |
| !!! | TTCATTTTATTTATTTAAGT+CGG | + | chr4.4:50155789-50155808 | MS.gene88194:intron | 10.0% |
| !!! | TTGCATTTAAATATATTTTT+TGG | + | chr4.4:50156913-50156932 | MS.gene88194:intron | 10.0% |
| !!! | TTTTATTTTTATTTTTATGG+TGG | - | chr4.4:50156322-50156341 | None:intergenic | 10.0% |
| !! | AAAATAAAGAAGAAAAGAAA+AGG | + | chr4.4:50156762-50156781 | MS.gene88194:intron | 15.0% |
| !! | AAATTAAATCCATAAAGTTT+AGG | + | chr4.4:50156483-50156502 | MS.gene88194:intron | 15.0% |
| !!! | ATTGTAATTAATTTGTTTGT+AGG | + | chr4.4:50155149-50155168 | MS.gene88194:intron | 15.0% |
| !!! | GGTAATTTTTATTATAAGAT+TGG | + | chr4.4:50155249-50155268 | MS.gene88194:intron | 15.0% |
| !!! | TATGATTATTTTCATTAACT+TGG | - | chr4.4:50156074-50156093 | None:intergenic | 15.0% |
| !!! | TCCATATGAATATTTATTTT+CGG | + | chr4.4:50155306-50155325 | MS.gene88194:intron | 15.0% |
| !!! | TTATAAGATTGGTTTTTATA+TGG | + | chr4.4:50155260-50155279 | MS.gene88194:intron | 15.0% |
| !!! | TTTTTTTTTCTAACAATCTA+TGG | - | chr4.4:50156464-50156483 | None:intergenic | 15.0% |
| !! | AAATAAATTGTATCCATTGT+TGG | - | chr4.4:50156414-50156433 | None:intergenic | 20.0% |
| !! | GAACTTTAACAAAAAAAATC+TGG | + | chr4.4:50156613-50156632 | MS.gene88194:intron | 20.0% |
| !! | TGCTAATGAGAAATTATAAA+TGG | + | chr4.4:50156587-50156606 | MS.gene88194:intron | 20.0% |
| !!! | ACAATGGATACAATTTATTT+TGG | + | chr4.4:50156414-50156433 | MS.gene88194:intron | 20.0% |
| !!! | ATTTTTATTTTTATGGTGGT+CGG | - | chr4.4:50156318-50156337 | None:intergenic | 20.0% |
| !!! | CATTATTTTGTGAATTGTTA+TGG | + | chr4.4:50155523-50155542 | MS.gene88194:intron | 20.0% |
| !!! | TAAATGGGGTATTAAAAAAT+TGG | - | chr4.4:50156006-50156025 | None:intergenic | 20.0% |
| ! | AAAGAACTTGTGACTTAAAT+GGG | - | chr4.4:50156021-50156040 | None:intergenic | 25.0% |
| ! | ATATTTGATCATTCCTTACA+TGG | - | chr4.4:50155868-50155887 | None:intergenic | 25.0% |
| ! | ATTTCAATGTGATTGGATTT+GGG | + | chr4.4:50155599-50155618 | MS.gene88194:CDS | 25.0% |
| ! | GCCGAAAATAAATATTCATA+TGG | - | chr4.4:50155310-50155329 | None:intergenic | 25.0% |
| ! | GTCGATAATTTCTAACAAAA+CGG | - | chr4.4:50156855-50156874 | None:intergenic | 25.0% |
| ! | TAAAGAACTTGTGACTTAAA+TGG | - | chr4.4:50156022-50156041 | None:intergenic | 25.0% |
| ! | TATAAATTATTGGCATCTAG+AGG | + | chr4.4:50155887-50155906 | MS.gene88194:intron | 25.0% |
| ! | TCATATTTCACGTGATTAAA+CGG | - | chr4.4:50155412-50155431 | None:intergenic | 25.0% |
| ! | TCTAACAGACAATTAAAACA+AGG | + | chr4.4:50155942-50155961 | MS.gene88194:intron | 25.0% |
| ! | TTATTAGCACCTAAACTTTA+TGG | - | chr4.4:50156495-50156514 | None:intergenic | 25.0% |
| !! | GTAAAATTTTACACCAACAA+TGG | + | chr4.4:50156398-50156417 | MS.gene88194:intron | 25.0% |
| !! | TTCAAAAGCAGTTTTTGTTA+AGG | - | chr4.4:50156729-50156748 | None:intergenic | 25.0% |
| !!! | GTTTTGTTAGAAATTATCGA+CGG | + | chr4.4:50156854-50156873 | MS.gene88194:intron | 25.0% |
| AAGAACTTGTGACTTAAATG+GGG | - | chr4.4:50156020-50156039 | None:intergenic | 30.0% | |
| ATGAAAATGACTAACCAGAA+GGG | - | chr4.4:50155748-50155767 | None:intergenic | 30.0% | |
| CAATGAAAATATGAAGTCGA+AGG | + | chr4.4:50156150-50156169 | MS.gene88194:intron | 30.0% | |
| GATTTCAATGTGATTGGATT+TGG | + | chr4.4:50155598-50155617 | MS.gene88194:CDS | 30.0% | |
| TGAATTGTTATGGCATGTTA+TGG | + | chr4.4:50155533-50155552 | MS.gene88194:intron | 30.0% | |
| ! | TGGGGTATTAAAAAATTGGA+AGG | - | chr4.4:50156002-50156021 | None:intergenic | 30.0% |
| !!! | TTCGGCTAGTTTTATAGTAT+AGG | + | chr4.4:50155324-50155343 | MS.gene88194:intron | 30.0% |
| AATCGGAACAAAACCATGTA+AGG | + | chr4.4:50155852-50155871 | MS.gene88194:intron | 35.0% | |
| ATAGATGGTAAAAGTCTGAC+TGG | + | chr4.4:50155658-50155677 | MS.gene88194:CDS | 35.0% | |
| ATCAATCCTACCGTCTAAAT+CGG | + | chr4.4:50155835-50155854 | MS.gene88194:intron | 35.0% | |
| ATGATGAATTGAGCAGGTTA+TGG | + | chr4.4:50156957-50156976 | MS.gene88194:intron | 35.0% | |
| GATGAAAATGACTAACCAGA+AGG | - | chr4.4:50155749-50155768 | None:intergenic | 35.0% | |
| GTTAATGATCATGATACCTG+AGG | - | chr4.4:50155087-50155106 | None:intergenic | 35.0% | |
| TCAAACATGATGAATTGAGC+AGG | + | chr4.4:50156951-50156970 | MS.gene88194:intron | 35.0% | |
| TTATGGCATGTTATGGCATA+TGG | + | chr4.4:50155540-50155559 | MS.gene88194:intron | 35.0% | |
| TTTCTAACAAAACGGTTCCA+TGG | - | chr4.4:50156847-50156866 | None:intergenic | 35.0% | |
| ! | AGACTTTTACCATCTATAGC+TGG | - | chr4.4:50155655-50155674 | None:intergenic | 35.0% |
| ! | TTTGGCCAAATTGGTTTCAA+AGG | + | chr4.4:50157019-50157038 | MS.gene88194:CDS | 35.0% |
| !! | GGACTTTTCTTTGATAGCAT+TGG | + | chr4.4:50155679-50155698 | MS.gene88194:CDS | 35.0% |
| !! | TCCTTCCTTTGAAACCAATT+TGG | - | chr4.4:50157027-50157046 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTTCCGATTTAGA+CGG | - | chr4.4:50155848-50155867 | None:intergenic | 35.0% |
| !!! | TTATTTTTATGGTGGTCGGT+CGG | - | chr4.4:50156314-50156333 | None:intergenic | 35.0% |
| AAGTCGAAGGAATCAGTTAG+AGG | + | chr4.4:50156163-50156182 | MS.gene88194:intron | 40.0% | |
| AGGAGGGATTTCAATGTGAT+TGG | + | chr4.4:50155592-50155611 | MS.gene88194:CDS | 40.0% | |
| ATAGTAGCTTCCAAAGGGAT+TGG | + | chr4.4:50155566-50155585 | MS.gene88194:intron | 40.0% | |
| GGTGTATAGTAGCTTCCAAA+GGG | + | chr4.4:50155561-50155580 | MS.gene88194:intron | 40.0% | |
| TCAAGCATACCAGCTATAGA+TGG | + | chr4.4:50155643-50155662 | MS.gene88194:CDS | 40.0% | |
| TCTATAGCTGGTATGCTTGA+TGG | - | chr4.4:50155643-50155662 | None:intergenic | 40.0% | |
| TGAAACCACAAGTGATTGCT+AGG | + | chr4.4:50155177-50155196 | MS.gene88194:CDS | 40.0% | |
| TGGTGTATAGTAGCTTCCAA+AGG | + | chr4.4:50155560-50155579 | MS.gene88194:intron | 40.0% | |
| TTTGTTCCGATTTAGACGGT+AGG | - | chr4.4:50155844-50155863 | None:intergenic | 40.0% | |
| ! | CTGTTCATCTCTCTCACTTT+TGG | + | chr4.4:50157001-50157020 | MS.gene88194:CDS | 40.0% |
| ! | GCCAAATTGGTTTCAAAGGA+AGG | + | chr4.4:50157023-50157042 | MS.gene88194:CDS | 40.0% |
| ! | TGAGCTTATCTCAGTTGGTA+GGG | + | chr4.4:50156251-50156270 | MS.gene88194:intron | 40.0% |
| !! | ATTTGGGTTGATAGGTTGGT+TGG | + | chr4.4:50155615-50155634 | MS.gene88194:CDS | 40.0% |
| !! | GAATCCTTTGAAGCAAGCTA+TGG | + | chr4.4:50155199-50155218 | MS.gene88194:CDS | 40.0% |
| !! | GTGATTGGATTTGGGTTGAT+AGG | + | chr4.4:50155607-50155626 | MS.gene88194:CDS | 40.0% |
| !! | TATTTTTATGGTGGTCGGTC+GGG | - | chr4.4:50156313-50156332 | None:intergenic | 40.0% |
| !! | TCTCTCACTTTTGGCCAAAT+TGG | + | chr4.4:50157010-50157029 | MS.gene88194:CDS | 40.0% |
| !! | TTGGATTTGGGTTGATAGGT+TGG | + | chr4.4:50155611-50155630 | MS.gene88194:CDS | 40.0% |
| AAAACGGTTCCATGGTCTAG+CGG | - | chr4.4:50156839-50156858 | None:intergenic | 45.0% | |
| AAGTAAGAGCAGGAGGAGTA+GGG | - | chr4.4:50155723-50155742 | None:intergenic | 45.0% | |
| AGTAACCCGAGTTCAAGTCT+CGG | - | chr4.4:50156793-50156812 | None:intergenic | 45.0% | |
| CAAGCTATGGCACTTGGAAA+TGG | + | chr4.4:50155212-50155231 | MS.gene88194:CDS | 45.0% | |
| CTATGGCACTTGGAAATGGT+GGG | + | chr4.4:50155216-50155235 | MS.gene88194:CDS | 45.0% | |
| GGATTCCTAGCAATCACTTG+TGG | - | chr4.4:50155185-50155204 | None:intergenic | 45.0% | |
| GTGAGCTTATCTCAGTTGGT+AGG | + | chr4.4:50156250-50156269 | MS.gene88194:intron | 45.0% | |
| TGGTTTCAAAGGAAGGACTG+AGG | + | chr4.4:50157030-50157049 | MS.gene88194:CDS | 45.0% | |
| TTGAAGCAAGCTATGGCACT+TGG | + | chr4.4:50155206-50155225 | MS.gene88194:CDS | 45.0% | |
| ! | ATTTTTATGGTGGTCGGTCG+GGG | - | chr4.4:50156312-50156331 | None:intergenic | 45.0% |
| ! | GAAATGGTGGGAGAGTTACA+TGG | + | chr4.4:50155228-50155247 | MS.gene88194:CDS | 45.0% |
| !! | AGTGCCATAGCTTGCTTCAA+AGG | - | chr4.4:50155206-50155225 | None:intergenic | 45.0% |
| !!! | AACATTTTTTTTTTTATTAA+TGG | + | chr4.4:50156541-50156560 | MS.gene88194:intron | 5.0% |
| !!! | ACATTTTTTTTTTTATTAAT+GGG | + | chr4.4:50156542-50156561 | MS.gene88194:intron | 5.0% |
| !!! | TAGTTTTATTTTTATTTTTA+TGG | - | chr4.4:50156325-50156344 | None:intergenic | 5.0% |
| AAGGGTGAAGTAAGAGCAGG+AGG | - | chr4.4:50155730-50155749 | None:intergenic | 50.0% | |
| ATGTCCTAACCGCTAGACCA+TGG | + | chr4.4:50156827-50156846 | MS.gene88194:intron | 50.0% | |
| CAGAAGGGTGAAGTAAGAGC+AGG | - | chr4.4:50155733-50155752 | None:intergenic | 50.0% | |
| CCAACTGAGATAAGCTCACG+AGG | - | chr4.4:50156249-50156268 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTATCTCAGT+TGG | + | chr4.4:50156246-50156265 | MS.gene88194:intron | 50.0% | |
| CTGCTCTTACTTCACCCTTC+TGG | + | chr4.4:50155731-50155750 | MS.gene88194:CDS | 50.0% | |
| GAAGTAAGAGCAGGAGGAGT+AGG | - | chr4.4:50155724-50155743 | None:intergenic | 50.0% | |
| GAGACTTGAACTCGGGTTAC+TGG | + | chr4.4:50156792-50156811 | MS.gene88194:intron | 50.0% | |
| GCAGGTTATGGCTGATCTGT+TGG | + | chr4.4:50156969-50156988 | MS.gene88194:intron | 50.0% | |
| GCTATGGCACTTGGAAATGG+TGG | + | chr4.4:50155215-50155234 | MS.gene88194:CDS | 50.0% | |
| GTTCCACCGAGACTTGAACT+CGG | + | chr4.4:50156784-50156803 | MS.gene88194:intron | 50.0% | |
| TGGTCTAGCGGTTAGGACAT+TGG | - | chr4.4:50156827-50156846 | None:intergenic | 50.0% | |
| TTCCACCGAGACTTGAACTC+GGG | + | chr4.4:50156785-50156804 | MS.gene88194:intron | 50.0% | |
| !! | CCAAAGGGATTGGCTAAGGA+GGG | + | chr4.4:50155576-50155595 | MS.gene88194:CDS | 50.0% |
| !! | GCTTCCAAAGGGATTGGCTA+AGG | + | chr4.4:50155572-50155591 | MS.gene88194:CDS | 50.0% |
| !! | TCCAAAGGGATTGGCTAAGG+AGG | + | chr4.4:50155575-50155594 | MS.gene88194:CDS | 50.0% |
| AACCCGAGTTCAAGTCTCGG+TGG | - | chr4.4:50156790-50156809 | None:intergenic | 55.0% | |
| ACAACCTTTCCGACCGTCCT+AGG | + | chr4.4:50155038-50155057 | MS.gene88194:CDS | 55.0% | |
| ATGGCTGATCTGTTGGCACC+TGG | + | chr4.4:50156976-50156995 | MS.gene88194:CDS | 55.0% | |
| CATTCCTAGGACGGTCGGAA+AGG | - | chr4.4:50155045-50155064 | None:intergenic | 55.0% | |
| CCCTCCTTAGCCAATCCCTT+TGG | - | chr4.4:50155579-50155598 | None:intergenic | 55.0% | |
| CTTTCCGACCGTCCTAGGAA+TGG | + | chr4.4:50155043-50155062 | MS.gene88194:CDS | 55.0% | |
| GGTTCCATGGTCTAGCGGTT+AGG | - | chr4.4:50156834-50156853 | None:intergenic | 55.0% | |
| GTGATGCACCAGCCATTCCT+AGG | - | chr4.4:50155058-50155077 | None:intergenic | 55.0% | |
| TGAGAGAGATGAACAGCCCC+AGG | - | chr4.4:50156997-50157016 | None:intergenic | 55.0% | |
| TGCACCAGCCATTCCTAGGA+CGG | - | chr4.4:50155054-50155073 | None:intergenic | 55.0% | |
| TGGCTGATCTGTTGGCACCT+GGG | + | chr4.4:50156977-50156996 | MS.gene88194:CDS | 55.0% | |
| CCAGCCATTCCTAGGACGGT+CGG | - | chr4.4:50155050-50155069 | None:intergenic | 60.0% | |
| GGCTGATCTGTTGGCACCTG+GGG | + | chr4.4:50156978-50156997 | MS.gene88194:CDS | 60.0% | |
| GGTGCATCACGTCTCACCTC+AGG | + | chr4.4:50155068-50155087 | MS.gene88194:CDS | 60.0% | |
| CCGACCGTCCTAGGAATGGC+TGG | + | chr4.4:50155047-50155066 | MS.gene88194:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50155029 | 50157069 | 50155029 | ID=MS.gene88194 |
| chr4.4 | mRNA | 50155029 | 50157069 | 50155029 | ID=MS.gene88194.t1;Parent=MS.gene88194 |
| chr4.4 | exon | 50155029 | 50155089 | 50155029 | ID=MS.gene88194.t1.exon1;Parent=MS.gene88194.t1 |
| chr4.4 | CDS | 50155029 | 50155089 | 50155029 | ID=cds.MS.gene88194.t1;Parent=MS.gene88194.t1 |
| chr4.4 | exon | 50155171 | 50155249 | 50155171 | ID=MS.gene88194.t1.exon2;Parent=MS.gene88194.t1 |
| chr4.4 | CDS | 50155171 | 50155249 | 50155171 | ID=cds.MS.gene88194.t1;Parent=MS.gene88194.t1 |
| chr4.4 | exon | 50155570 | 50155752 | 50155570 | ID=MS.gene88194.t1.exon3;Parent=MS.gene88194.t1 |
| chr4.4 | CDS | 50155570 | 50155752 | 50155570 | ID=cds.MS.gene88194.t1;Parent=MS.gene88194.t1 |
| chr4.4 | exon | 50156973 | 50157069 | 50156973 | ID=MS.gene88194.t1.exon4;Parent=MS.gene88194.t1 |
| chr4.4 | CDS | 50156973 | 50157069 | 50156973 | ID=cds.MS.gene88194.t1;Parent=MS.gene88194.t1 |
| Gene Sequence |
| Protein sequence |
