Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66718.t1 | XP_013455794.1 | 98.6 | 139 | 2 | 0 | 1 | 139 | 1 | 139 | 1.50E-75 | 292 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66718.t1 | Q949Q5 | 72.7 | 143 | 30 | 4 | 1 | 137 | 1 | 140 | 5.2e-53 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66718.t1 | I3SE13 | 98.6 | 139 | 2 | 0 | 1 | 139 | 1 | 139 | 1.1e-75 | 292.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene66718 | 0.807824 | 4.19E-50 | -1.69E-46 |
| MS.gene049173 | MS.gene66718 | 0.853015 | 3.16E-61 | -1.69E-46 |
| MS.gene049217 | MS.gene66718 | 0.827327 | 1.66E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene66718 | 0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene66718 | 0.841172 | 5.58E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene66718 | 0.858355 | 8.72E-63 | -1.69E-46 |
| MS.gene049369 | MS.gene66718 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene66718 | 0.817241 | 3.65E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene66718 | 0.850415 | 1.72E-60 | -1.69E-46 |
| MS.gene049614 | MS.gene66718 | 0.821557 | 3.79E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene66718 | 0.818107 | 2.33E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene66718 | 0.803856 | 2.85E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene66718 | 0.839368 | 1.65E-57 | -1.69E-46 |
| MS.gene049828 | MS.gene66718 | 0.811523 | 6.71E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene66718 | 0.857682 | 1.38E-62 | -1.69E-46 |
| MS.gene050163 | MS.gene66718 | 0.847672 | 9.97E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene66718 | 0.824446 | 8.04E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene66718 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene66718 | 0.87117 | 8.38E-67 | -1.69E-46 |
| MS.gene050504 | MS.gene66718 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene66718 | 0.818696 | 1.71E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene66718 | 0.809157 | 2.17E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene66718 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene050686 | MS.gene66718 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene66718 | 0.835072 | 2.08E-56 | -1.69E-46 |
| MS.gene050767 | MS.gene66718 | 0.860487 | 2.00E-63 | -1.69E-46 |
| MS.gene050770 | MS.gene66718 | 0.862071 | 6.57E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene66718 | 0.871874 | 4.90E-67 | -1.69E-46 |
| MS.gene050783 | MS.gene66718 | 0.801936 | 7.12E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene66718 | 0.822328 | 2.51E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene66718 | 0.853987 | 1.66E-61 | -1.69E-46 |
| MS.gene05101 | MS.gene66718 | 0.826518 | 2.60E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene66718 | 0.843771 | 1.14E-58 | -1.69E-46 |
| MS.gene051228 | MS.gene66718 | 0.852241 | 5.25E-61 | -1.69E-46 |
| MS.gene051551 | MS.gene66718 | 0.832105 | 1.14E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene66718 | 0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene66718 | 0.866778 | 2.22E-65 | -1.69E-46 |
| MS.gene051810 | MS.gene66718 | 0.875464 | 3.02E-68 | -1.69E-46 |
| MS.gene051858 | MS.gene66718 | 0.828467 | 8.85E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene66718 | 0.882711 | 8.28E-71 | -1.69E-46 |
| MS.gene052290 | MS.gene66718 | 0.846439 | 2.17E-59 | -1.69E-46 |
| MS.gene052379 | MS.gene66718 | 0.838497 | 2.78E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene66718 | 0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene66718 | 0.831602 | 1.52E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene66718 | 0.84784 | 8.96E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene66718 | 0.834466 | 2.95E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene66718 | 0.81336 | 2.66E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene66718 | 0.864119 | 1.53E-64 | -1.69E-46 |
| MS.gene053104 | MS.gene66718 | 0.862902 | 3.65E-64 | -1.69E-46 |
| MS.gene053207 | MS.gene66718 | 0.859578 | 3.75E-63 | -1.69E-46 |
| MS.gene053209 | MS.gene66718 | 0.859151 | 5.04E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene66718 | 0.879967 | 8.08E-70 | -1.69E-46 |
| MS.gene053286 | MS.gene66718 | 0.870232 | 1.70E-66 | -1.69E-46 |
| MS.gene053322 | MS.gene66718 | 0.868589 | 5.84E-66 | -1.69E-46 |
| MS.gene053449 | MS.gene66718 | 0.817608 | 3.02E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene66718 | 0.816901 | 4.35E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene66718 | 0.862726 | 4.13E-64 | -1.69E-46 |
| MS.gene053813 | MS.gene66718 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene66718 | 0.804867 | 1.76E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene66718 | 0.853076 | 3.03E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene66718 | 0.866129 | 3.57E-65 | -1.69E-46 |
| MS.gene054642 | MS.gene66718 | 0.858393 | 8.49E-63 | -1.69E-46 |
| MS.gene054802 | MS.gene66718 | 0.827705 | 1.35E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene66718 | 0.822928 | 1.82E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene66718 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene66718 | 0.801517 | 8.67E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene66718 | 0.834838 | 2.38E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene66718 | 0.816546 | 5.23E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene66718 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene055212 | MS.gene66718 | 0.874177 | 8.28E-68 | -1.69E-46 |
| MS.gene055254 | MS.gene66718 | 0.850733 | 1.40E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene66718 | 0.816549 | 5.22E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene66718 | 0.862195 | 6.02E-64 | -1.69E-46 |
| MS.gene055397 | MS.gene66718 | 0.843112 | 1.71E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene66718 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene66718 | 0.885603 | 7.05E-72 | -1.69E-46 |
| MS.gene055502 | MS.gene66718 | 0.819326 | 1.23E-52 | -1.69E-46 |
| MS.gene055633 | MS.gene66718 | 0.812284 | 4.58E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene66718 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene66718 | 0.854129 | 1.51E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene66718 | 0.87873 | 2.22E-69 | -1.69E-46 |
| MS.gene05592 | MS.gene66718 | 0.870676 | 1.22E-66 | -1.69E-46 |
| MS.gene055941 | MS.gene66718 | 0.821913 | 3.14E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene66718 | -0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene66718 | 0.81667 | 4.91E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene66718 | 0.817608 | 3.02E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene66718 | 0.880733 | 4.30E-70 | -1.69E-46 |
| MS.gene056410 | MS.gene66718 | 0.817697 | 2.88E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene66718 | 0.829955 | 3.85E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene66718 | 0.864424 | 1.23E-64 | -1.69E-46 |
| MS.gene056897 | MS.gene66718 | 0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene66718 | 0.805814 | 1.11E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene66718 | 0.817647 | 2.96E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene66718 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene66718 | 0.894246 | 2.95E-75 | -1.69E-46 |
| MS.gene057146 | MS.gene66718 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene66718 | 0.802665 | 5.04E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene66718 | 0.831139 | 1.98E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene66718 | 0.86089 | 1.51E-63 | -1.69E-46 |
| MS.gene05733 | MS.gene66718 | 0.811498 | 6.79E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene66718 | 0.863331 | 2.69E-64 | -1.69E-46 |
| MS.gene057926 | MS.gene66718 | 0.825984 | 3.48E-54 | -1.69E-46 |
| MS.gene058006 | MS.gene66718 | 0.830686 | 2.55E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene66718 | 0.863601 | 2.22E-64 | -1.69E-46 |
| MS.gene058293 | MS.gene66718 | 0.844522 | 7.18E-59 | -1.69E-46 |
| MS.gene058323 | MS.gene66718 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene66718 | 0.862064 | 6.60E-64 | -1.69E-46 |
| MS.gene058660 | MS.gene66718 | 0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene66718 | 0.847989 | 8.16E-60 | -1.69E-46 |
| MS.gene058773 | MS.gene66718 | 0.815194 | 1.05E-51 | -1.69E-46 |
| MS.gene058787 | MS.gene66718 | 0.800425 | 1.45E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene66718 | 0.834926 | 2.26E-56 | -1.69E-46 |
| MS.gene059029 | MS.gene66718 | 0.840949 | 6.39E-58 | -1.69E-46 |
| MS.gene05913 | MS.gene66718 | 0.834373 | 3.11E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene66718 | 0.808525 | 2.97E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene66718 | 0.800539 | 1.37E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene66718 | 0.843939 | 1.03E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene66718 | 0.848526 | 5.79E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene66718 | 0.843139 | 1.68E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene66718 | 0.861993 | 6.94E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene66718 | 0.863534 | 2.32E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene66718 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene66718 | 0.841375 | 4.94E-58 | -1.69E-46 |
| MS.gene059858 | MS.gene66718 | 0.856842 | 2.45E-62 | -1.69E-46 |
| MS.gene059902 | MS.gene66718 | 0.823225 | 1.55E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene66718 | 0.857774 | 1.30E-62 | -1.69E-46 |
| MS.gene060193 | MS.gene66718 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene060341 | MS.gene66718 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene060356 | MS.gene66718 | 0.816113 | 6.54E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene66718 | 0.802834 | 4.65E-49 | -1.69E-46 |
| MS.gene060727 | MS.gene66718 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene66718 | 0.867656 | 1.17E-65 | -1.69E-46 |
| MS.gene060818 | MS.gene66718 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene66718 | 0.811228 | 7.78E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene66718 | 0.807545 | 4.80E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene66718 | 0.812073 | 5.09E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene66718 | 0.844602 | 6.83E-59 | -1.69E-46 |
| MS.gene061150 | MS.gene66718 | 0.812369 | 4.39E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene66718 | 0.86738 | 1.43E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66718 | MS.gene012982 | PPI |
| MS.gene039151 | MS.gene66718 | PPI |
| MS.gene66718 | MS.gene050699 | PPI |
| MS.gene66718 | MS.gene025854 | PPI |
| MS.gene66718 | MS.gene22752 | PPI |
| MS.gene66718 | MS.gene38715 | PPI |
| MS.gene66718 | MS.gene054642 | PPI |
| MS.gene66718 | MS.gene024386 | PPI |
| MS.gene48506 | MS.gene66718 | PPI |
| MS.gene66718 | MS.gene040618 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66718.t1 | MTR_4g052420 | 98.561 | 139 | 2 | 0 | 1 | 139 | 1 | 139 | 1.57e-98 | 279 |
| MS.gene66718.t1 | MTR_4g052420 | 97.842 | 139 | 2 | 1 | 1 | 139 | 1 | 138 | 5.49e-96 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66718.t1 | AT1G08380 | 74.627 | 134 | 27 | 3 | 8 | 137 | 10 | 140 | 7.35e-66 | 196 |
Find 49 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCAATGTGATTGGATT+TGG | 0.225162 | 4.3:+47555793 | MS.gene66718:CDS |
| CTGTTCATCTCTCTCACTTT+TGG | 0.231594 | 4.3:+47557213 | MS.gene66718:CDS |
| TCCTTCCTTTGAAACCAATT+TGG | 0.248618 | 4.3:-47557236 | None:intergenic |
| CTGCTCTTACTTCACCCTTC+TGG | 0.272395 | 4.3:+47555926 | MS.gene66718:CDS |
| TGAAACCTCAAGTGATTGTT+AGG | 0.291393 | 4.3:+47555372 | MS.gene66718:CDS |
| ATGGCTGATCTGTTGGCACC+TGG | 0.325103 | 4.3:+47557188 | MS.gene66718:CDS |
| GTGATTGGATTTGGGTTGAT+AGG | 0.341850 | 4.3:+47555802 | MS.gene66718:CDS |
| ATTTCAATGTGATTGGATTT+GGG | 0.350561 | 4.3:+47555794 | MS.gene66718:CDS |
| AGGAGGGATTTCAATGTGAT+TGG | 0.352292 | 4.3:+47555787 | MS.gene66718:CDS |
| GAAGTAAGAGCAGGAGGAGT+AGG | 0.358016 | 4.3:-47555916 | None:intergenic |
| TTGGATTTGGGTTGATAGGT+TGG | 0.379649 | 4.3:+47555806 | MS.gene66718:CDS |
| CCCTCCTCAGCCAATCCCTT+TGG | 0.395602 | 4.3:-47555771 | None:intergenic |
| TCTATAGCTGGTATGCTTGA+TGG | 0.430936 | 4.3:-47555835 | None:intergenic |
| AAGTAAGAGCAGGAGGAGTA+GGG | 0.437703 | 4.3:-47555915 | None:intergenic |
| CAAGCTATGGCACTTGGAAA+TGG | 0.452932 | 4.3:+47555407 | MS.gene66718:CDS |
| TGGCTGATCTGTTGGCACCT+GGG | 0.454791 | 4.3:+47557189 | MS.gene66718:CDS |
| GCCAAATTGGTTTCAAAGGA+AGG | 0.457172 | 4.3:+47557235 | MS.gene66718:CDS |
| ATTTGGGTTGATAGGTTGGT+TGG | 0.470446 | 4.3:+47555810 | MS.gene66718:CDS |
| ACAACCTTTCCAACCGTCCT+AGG | 0.470976 | 4.3:+47555237 | MS.gene66718:CDS |
| GGCTGATCTGTTGGCACCTG+GGG | 0.482909 | 4.3:+47557190 | MS.gene66718:CDS |
| TCAAGCATACCAGCTATAGA+TGG | 0.485882 | 4.3:+47555838 | MS.gene66718:CDS |
| TTTGGCCAAATTGGTTTCAA+AGG | 0.491678 | 4.3:+47557231 | MS.gene66718:CDS |
| AGTGCCATAGCTTGTTTCAA+AGG | 0.494595 | 4.3:-47555398 | None:intergenic |
| TTGAAACAAGCTATGGCACT+TGG | 0.496494 | 4.3:+47555401 | MS.gene66718:CDS |
| TCCAAAGGGATTGGCTGAGG+AGG | 0.519342 | 4.3:+47555770 | MS.gene66718:CDS |
| GGTGCATCACGTCTCACCTC+AGG | 0.521677 | 4.3:+47555267 | MS.gene66718:CDS |
| GCAGGTTATGGCTGATCTGT+TGG | 0.521700 | 4.3:+47557181 | MS.gene66718:intron |
| TGAGAGAGATGAACAGCCCC+AGG | 0.530883 | 4.3:-47557206 | None:intergenic |
| CCAACCGTCCTAGGAATGGC+TGG | 0.539875 | 4.3:+47555246 | MS.gene66718:CDS |
| CCAGCCATTCCTAGGACGGT+TGG | 0.541005 | 4.3:-47555246 | None:intergenic |
| GTGATGCACCAGCCATTCCT+AGG | 0.542585 | 4.3:-47555254 | None:intergenic |
| ATAGATGGTAAAAGTCTGAC+TGG | 0.543316 | 4.3:+47555853 | MS.gene66718:CDS |
| ATAGTAGCTTCCAAAGGGAT+TGG | 0.543759 | 4.3:+47555761 | MS.gene66718:intron |
| GCTATGGCACTTGGAAATGG+TGG | 0.545551 | 4.3:+47555410 | MS.gene66718:CDS |
| CCAAAGGGATTGGCTGAGGA+GGG | 0.551644 | 4.3:+47555771 | MS.gene66718:CDS |
| CAGAAGGGTGAAGTAAGAGC+AGG | 0.557629 | 4.3:-47555925 | None:intergenic |
| GAATCCTTTGAAACAAGCTA+TGG | 0.562317 | 4.3:+47555394 | MS.gene66718:CDS |
| CTTTCCAACCGTCCTAGGAA+TGG | 0.566203 | 4.3:+47555242 | MS.gene66718:CDS |
| GGTGTATAGTAGCTTCCAAA+GGG | 0.571319 | 4.3:+47555756 | MS.gene66718:intron |
| CATTCCTAGGACGGTTGGAA+AGG | 0.571757 | 4.3:-47555241 | None:intergenic |
| GCTTCCAAAGGGATTGGCTG+AGG | 0.582802 | 4.3:+47555767 | MS.gene66718:CDS |
| TGGTGTATAGTAGCTTCCAA+AGG | 0.596452 | 4.3:+47555755 | MS.gene66718:intron |
| CTATGGCACTTGGAAATGGT+GGG | 0.605091 | 4.3:+47555411 | MS.gene66718:CDS |
| AAGGGTGAAGTAAGAGCAGG+AGG | 0.608022 | 4.3:-47555922 | None:intergenic |
| TGCACCAGCCATTCCTAGGA+CGG | 0.612860 | 4.3:-47555250 | None:intergenic |
| GGATTCCTAACAATCACTTG+AGG | 0.619263 | 4.3:-47555377 | None:intergenic |
| GAAATGGTGGGAGAGTTACA+TGG | 0.656018 | 4.3:+47555423 | MS.gene66718:CDS |
| TGGTTTCAAAGGAAGGACTG+AGG | 0.666404 | 4.3:+47557242 | MS.gene66718:CDS |
| ATGAAAATGACTAACCAGAA+GGG | 0.671062 | 4.3:-47555940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATCAAATATATAAATTAT+TGG | + | chr4.3:47556071-47556090 | MS.gene66718:intron | 10.0% |
| !!! | TTCATTTTATTTATTTAAGT+CGG | + | chr4.3:47555984-47556003 | MS.gene66718:intron | 10.0% |
| !!! | TTTATTTTTTATTTTTATGG+TGG | - | chr4.3:47556578-47556597 | None:intergenic | 10.0% |
| !! | AAATTAAATCCATAAAGTTT+AGG | + | chr4.3:47556739-47556758 | MS.gene66718:intron | 15.0% |
| !! | AGTAAAATAAAGAAAAGAAA+AGG | + | chr4.3:47557001-47557020 | MS.gene66718:intron | 15.0% |
| !!! | AAACTGAAGTAAATATTTTT+TGG | + | chr4.3:47557125-47557144 | MS.gene66718:intron | 15.0% |
| !!! | TATGATTATTTTCATTAACT+TGG | - | chr4.3:47556265-47556284 | None:intergenic | 15.0% |
| !!! | TTTAATTGTAATTTGTTTGT+AGG | + | chr4.3:47555344-47555363 | MS.gene66718:intron | 15.0% |
| !!! | TTTTTTTTTCTAACAATCTA+TGG | - | chr4.3:47556722-47556741 | None:intergenic | 15.0% |
| !! | AAAGTAATGAAAATATGAAG+TGG | + | chr4.3:47556337-47556356 | MS.gene66718:intron | 20.0% |
| !! | AAATAAATTGTATCCATTGT+TGG | - | chr4.3:47556672-47556691 | None:intergenic | 20.0% |
| !! | ATCCATATGAATATTTATCT+CGG | + | chr4.3:47555500-47555519 | MS.gene66718:intron | 20.0% |
| !! | GAACTTTAACAAAAAAAATC+TGG | + | chr4.3:47556870-47556889 | MS.gene66718:intron | 20.0% |
| !! | TATATTTGATCATTCTTACA+TGG | - | chr4.3:47556063-47556082 | None:intergenic | 20.0% |
| !! | TGCTAATGAGAAATTATAAA+TGG | + | chr4.3:47556844-47556863 | MS.gene66718:intron | 20.0% |
| !!! | ACAATGGATACAATTTATTT+TGG | + | chr4.3:47556672-47556691 | MS.gene66718:intron | 20.0% |
| !!! | CATTATTTTGTGAATTGTTA+TGG | + | chr4.3:47555718-47555737 | MS.gene66718:intron | 20.0% |
| !!! | TAAATGGGGTATTAAAAAAT+TGG | - | chr4.3:47556199-47556218 | None:intergenic | 20.0% |
| !!! | TTCAAAAGCAATTTTTGTTA+AGG | - | chr4.3:47556971-47556990 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTTTATGGTGGT+CGG | - | chr4.3:47556574-47556593 | None:intergenic | 20.0% |
| ! | AAAGAACTTGTGACTTAAAT+GGG | - | chr4.3:47556214-47556233 | None:intergenic | 25.0% |
| ! | ATTTCAATGTGATTGGATTT+GGG | + | chr4.3:47555794-47555813 | MS.gene66718:CDS | 25.0% |
| ! | TAAAGAACTTGTGACTTAAA+TGG | - | chr4.3:47556215-47556234 | None:intergenic | 25.0% |
| ! | TAATGAAAATATGAAGTGGA+AGG | + | chr4.3:47556341-47556360 | MS.gene66718:intron | 25.0% |
| ! | TATAAATTATTGGCATCTAG+AGG | + | chr4.3:47556081-47556100 | MS.gene66718:intron | 25.0% |
| ! | TCATATTTCACGTGATTAAA+CGG | - | chr4.3:47555607-47555626 | None:intergenic | 25.0% |
| ! | TCCATATGAATATTTATCTC+GGG | + | chr4.3:47555501-47555520 | MS.gene66718:intron | 25.0% |
| ! | TCTAACAGACAATTAAAACA+AGG | + | chr4.3:47556136-47556155 | MS.gene66718:intron | 25.0% |
| ! | TTATTAGCACCTAAACTTTA+TGG | - | chr4.3:47556751-47556770 | None:intergenic | 25.0% |
| !! | GTAAAATTTTACACCAACAA+TGG | + | chr4.3:47556656-47556675 | MS.gene66718:intron | 25.0% |
| AAGAACTTGTGACTTAAATG+GGG | - | chr4.3:47556213-47556232 | None:intergenic | 30.0% | |
| ATGAAAATGACTAACCAGAA+GGG | - | chr4.3:47555943-47555962 | None:intergenic | 30.0% | |
| GATTTCAATGTGATTGGATT+TGG | + | chr4.3:47555793-47555812 | MS.gene66718:CDS | 30.0% | |
| GTCGGTAATTTCTAACAAAA+CGG | - | chr4.3:47557094-47557113 | None:intergenic | 30.0% | |
| TCAGTTTATATTACATCCGT+CGG | - | chr4.3:47557112-47557131 | None:intergenic | 30.0% | |
| TGAATTGTTATGGCATGTTA+TGG | + | chr4.3:47555728-47555747 | MS.gene66718:intron | 30.0% | |
| ! | TGGGGTATTAAAAAATTGGA+AGG | - | chr4.3:47556195-47556214 | None:intergenic | 30.0% |
| !! | GTTTTGTTAGAAATTACCGA+CGG | + | chr4.3:47557093-47557112 | MS.gene66718:intron | 30.0% |
| ATAGATGGTAAAAGTCTGAC+TGG | + | chr4.3:47555853-47555872 | MS.gene66718:CDS | 35.0% | |
| ATCAATCCTACCGTCTAAAT+CGG | + | chr4.3:47556030-47556049 | MS.gene66718:intron | 35.0% | |
| ATGATGAATTGAGCAGGTTA+TGG | + | chr4.3:47557169-47557188 | MS.gene66718:intron | 35.0% | |
| GATGAAAATGACTAACCAGA+AGG | - | chr4.3:47555944-47555963 | None:intergenic | 35.0% | |
| GCCCGAGATAAATATTCATA+TGG | - | chr4.3:47555505-47555524 | None:intergenic | 35.0% | |
| GTGAGCTTGTCTTAGTAAAA+AGG | + | chr4.3:47556388-47556407 | MS.gene66718:intron | 35.0% | |
| GTTAATGATCATGATACCTG+AGG | - | chr4.3:47555286-47555305 | None:intergenic | 35.0% | |
| TCAAACATGATGAATTGAGC+AGG | + | chr4.3:47557163-47557182 | MS.gene66718:intron | 35.0% | |
| TGAAACCTCAAGTGATTGTT+AGG | + | chr4.3:47555372-47555391 | MS.gene66718:CDS | 35.0% | |
| TTATGGCATGTTATGGCATA+TGG | + | chr4.3:47555735-47555754 | MS.gene66718:intron | 35.0% | |
| TTTCTAACAAAACGGTTCCA+TGG | - | chr4.3:47557086-47557105 | None:intergenic | 35.0% | |
| ! | AAGGAATCAGTTAGAGGTAT+TGG | + | chr4.3:47556360-47556379 | MS.gene66718:intron | 35.0% |
| ! | AGACTTTTACCATCTATAGC+TGG | - | chr4.3:47555850-47555869 | None:intergenic | 35.0% |
| ! | TTTGGCCAAATTGGTTTCAA+AGG | + | chr4.3:47557231-47557250 | MS.gene66718:CDS | 35.0% |
| !! | AGGAATCAGTTAGAGGTATT+GGG | + | chr4.3:47556361-47556380 | MS.gene66718:intron | 35.0% |
| !! | GAATCCTTTGAAACAAGCTA+TGG | + | chr4.3:47555394-47555413 | MS.gene66718:CDS | 35.0% |
| !! | GGACTTTTCTTTGATAGCAT+TGG | + | chr4.3:47555874-47555893 | MS.gene66718:CDS | 35.0% |
| !! | TCCTTCCTTTGAAACCAATT+TGG | - | chr4.3:47557239-47557258 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTTCCGATTTAGA+CGG | - | chr4.3:47556043-47556062 | None:intergenic | 35.0% |
| AAGTGGAAGGAATCAGTTAG+AGG | + | chr4.3:47556354-47556373 | MS.gene66718:intron | 40.0% | |
| AGGAGGGATTTCAATGTGAT+TGG | + | chr4.3:47555787-47555806 | MS.gene66718:CDS | 40.0% | |
| ATAGTAGCTTCCAAAGGGAT+TGG | + | chr4.3:47555761-47555780 | MS.gene66718:intron | 40.0% | |
| GGATTCCTAACAATCACTTG+AGG | - | chr4.3:47555380-47555399 | None:intergenic | 40.0% | |
| GGTGTATAGTAGCTTCCAAA+GGG | + | chr4.3:47555756-47555775 | MS.gene66718:intron | 40.0% | |
| TCAAGCATACCAGCTATAGA+TGG | + | chr4.3:47555838-47555857 | MS.gene66718:CDS | 40.0% | |
| TCTATAGCTGGTATGCTTGA+TGG | - | chr4.3:47555838-47555857 | None:intergenic | 40.0% | |
| TGGTGTATAGTAGCTTCCAA+AGG | + | chr4.3:47555755-47555774 | MS.gene66718:intron | 40.0% | |
| TTGAAACAAGCTATGGCACT+TGG | + | chr4.3:47555401-47555420 | MS.gene66718:CDS | 40.0% | |
| TTTGTTCCGATTTAGACGGT+AGG | - | chr4.3:47556039-47556058 | None:intergenic | 40.0% | |
| ! | CTGTTCATCTCTCTCACTTT+TGG | + | chr4.3:47557213-47557232 | MS.gene66718:CDS | 40.0% |
| ! | GCCAAATTGGTTTCAAAGGA+AGG | + | chr4.3:47557235-47557254 | MS.gene66718:CDS | 40.0% |
| ! | TGAGCTTATCTCAGTTGGTA+GGG | + | chr4.3:47556511-47556530 | MS.gene66718:intron | 40.0% |
| !! | AGTGCCATAGCTTGTTTCAA+AGG | - | chr4.3:47555401-47555420 | None:intergenic | 40.0% |
| !! | ATTTGGGTTGATAGGTTGGT+TGG | + | chr4.3:47555810-47555829 | MS.gene66718:CDS | 40.0% |
| !! | GTGATTGGATTTGGGTTGAT+AGG | + | chr4.3:47555802-47555821 | MS.gene66718:CDS | 40.0% |
| !! | TCTCTCACTTTTGGCCAAAT+TGG | + | chr4.3:47557222-47557241 | MS.gene66718:CDS | 40.0% |
| !! | TTGGATTTGGGTTGATAGGT+TGG | + | chr4.3:47555806-47555825 | MS.gene66718:CDS | 40.0% |
| AAAACGGTTCCATGGTCTAG+CGG | - | chr4.3:47557078-47557097 | None:intergenic | 45.0% | |
| AAGTAAGAGCAGGAGGAGTA+GGG | - | chr4.3:47555918-47555937 | None:intergenic | 45.0% | |
| AGTAACCCGAGTTCAAGTCT+CGG | - | chr4.3:47557032-47557051 | None:intergenic | 45.0% | |
| CAAGCTATGGCACTTGGAAA+TGG | + | chr4.3:47555407-47555426 | MS.gene66718:CDS | 45.0% | |
| CTATGGCACTTGGAAATGGT+GGG | + | chr4.3:47555411-47555430 | MS.gene66718:CDS | 45.0% | |
| GTGAGCTTATCTCAGTTGGT+AGG | + | chr4.3:47556510-47556529 | MS.gene66718:intron | 45.0% | |
| TGGTTTCAAAGGAAGGACTG+AGG | + | chr4.3:47557242-47557261 | MS.gene66718:CDS | 45.0% | |
| ! | GAAATGGTGGGAGAGTTACA+TGG | + | chr4.3:47555423-47555442 | MS.gene66718:CDS | 45.0% |
| !!! | ACATATTTTTTTTTTATTAA+TGG | + | chr4.3:47556798-47556817 | MS.gene66718:intron | 5.0% |
| !!! | CATATTTTTTTTTTATTAAT+GGG | + | chr4.3:47556799-47556818 | MS.gene66718:intron | 5.0% |
| !!! | GTTTTTATTTTTTATTTTTA+TGG | - | chr4.3:47556581-47556600 | None:intergenic | 5.0% |
| AAGGGTGAAGTAAGAGCAGG+AGG | - | chr4.3:47555925-47555944 | None:intergenic | 50.0% | |
| ACAACCTTTCCAACCGTCCT+AGG | + | chr4.3:47555237-47555256 | MS.gene66718:CDS | 50.0% | |
| ATGTCCTAACCGCTAGACCA+TGG | + | chr4.3:47557066-47557085 | MS.gene66718:intron | 50.0% | |
| CAGAAGGGTGAAGTAAGAGC+AGG | - | chr4.3:47555928-47555947 | None:intergenic | 50.0% | |
| CATTCCTAGGACGGTTGGAA+AGG | - | chr4.3:47555244-47555263 | None:intergenic | 50.0% | |
| CCAACTGAGATAAGCTCACG+AGG | - | chr4.3:47556509-47556528 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTATCTCAGT+TGG | + | chr4.3:47556506-47556525 | MS.gene66718:intron | 50.0% | |
| CTGCTCTTACTTCACCCTTC+TGG | + | chr4.3:47555926-47555945 | MS.gene66718:CDS | 50.0% | |
| CTTTCCAACCGTCCTAGGAA+TGG | + | chr4.3:47555242-47555261 | MS.gene66718:CDS | 50.0% | |
| GAAGTAAGAGCAGGAGGAGT+AGG | - | chr4.3:47555919-47555938 | None:intergenic | 50.0% | |
| GAGACTTGAACTCGGGTTAC+TGG | + | chr4.3:47557031-47557050 | MS.gene66718:intron | 50.0% | |
| GCAGGTTATGGCTGATCTGT+TGG | + | chr4.3:47557181-47557200 | MS.gene66718:intron | 50.0% | |
| GCTATGGCACTTGGAAATGG+TGG | + | chr4.3:47555410-47555429 | MS.gene66718:CDS | 50.0% | |
| GTTCCACCGAGACTTGAACT+CGG | + | chr4.3:47557023-47557042 | MS.gene66718:intron | 50.0% | |
| TGGTCTAGCGGTTAGGACAT+TGG | - | chr4.3:47557066-47557085 | None:intergenic | 50.0% | |
| TTCCACCGAGACTTGAACTC+GGG | + | chr4.3:47557024-47557043 | MS.gene66718:intron | 50.0% | |
| AACCCGAGTTCAAGTCTCGG+TGG | - | chr4.3:47557029-47557048 | None:intergenic | 55.0% | |
| ATGGCTGATCTGTTGGCACC+TGG | + | chr4.3:47557188-47557207 | MS.gene66718:CDS | 55.0% | |
| GGTTCCATGGTCTAGCGGTT+AGG | - | chr4.3:47557073-47557092 | None:intergenic | 55.0% | |
| GTGATGCACCAGCCATTCCT+AGG | - | chr4.3:47555257-47555276 | None:intergenic | 55.0% | |
| TGAGAGAGATGAACAGCCCC+AGG | - | chr4.3:47557209-47557228 | None:intergenic | 55.0% | |
| TGCACCAGCCATTCCTAGGA+CGG | - | chr4.3:47555253-47555272 | None:intergenic | 55.0% | |
| TGGCTGATCTGTTGGCACCT+GGG | + | chr4.3:47557189-47557208 | MS.gene66718:CDS | 55.0% | |
| !! | CCAAAGGGATTGGCTGAGGA+GGG | + | chr4.3:47555771-47555790 | MS.gene66718:CDS | 55.0% |
| !! | GCTTCCAAAGGGATTGGCTG+AGG | + | chr4.3:47555767-47555786 | MS.gene66718:CDS | 55.0% |
| !! | TCCAAAGGGATTGGCTGAGG+AGG | + | chr4.3:47555770-47555789 | MS.gene66718:CDS | 55.0% |
| CCAACCGTCCTAGGAATGGC+TGG | + | chr4.3:47555246-47555265 | MS.gene66718:CDS | 60.0% | |
| CCAGCCATTCCTAGGACGGT+TGG | - | chr4.3:47555249-47555268 | None:intergenic | 60.0% | |
| CCCTCCTCAGCCAATCCCTT+TGG | - | chr4.3:47555774-47555793 | None:intergenic | 60.0% | |
| GGCTGATCTGTTGGCACCTG+GGG | + | chr4.3:47557190-47557209 | MS.gene66718:CDS | 60.0% | |
| GGTGCATCACGTCTCACCTC+AGG | + | chr4.3:47555267-47555286 | MS.gene66718:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 47555228 | 47557281 | 47555228 | ID=MS.gene66718 |
| chr4.3 | mRNA | 47555228 | 47557281 | 47555228 | ID=MS.gene66718.t1;Parent=MS.gene66718 |
| chr4.3 | exon | 47555228 | 47555288 | 47555228 | ID=MS.gene66718.t1.exon1;Parent=MS.gene66718.t1 |
| chr4.3 | CDS | 47555228 | 47555288 | 47555228 | ID=cds.MS.gene66718.t1;Parent=MS.gene66718.t1 |
| chr4.3 | exon | 47555366 | 47555444 | 47555366 | ID=MS.gene66718.t1.exon2;Parent=MS.gene66718.t1 |
| chr4.3 | CDS | 47555366 | 47555444 | 47555366 | ID=cds.MS.gene66718.t1;Parent=MS.gene66718.t1 |
| chr4.3 | exon | 47555765 | 47555947 | 47555765 | ID=MS.gene66718.t1.exon3;Parent=MS.gene66718.t1 |
| chr4.3 | CDS | 47555765 | 47555947 | 47555765 | ID=cds.MS.gene66718.t1;Parent=MS.gene66718.t1 |
| chr4.3 | exon | 47557185 | 47557281 | 47557185 | ID=MS.gene66718.t1.exon4;Parent=MS.gene66718.t1 |
| chr4.3 | CDS | 47557185 | 47557281 | 47557185 | ID=cds.MS.gene66718.t1;Parent=MS.gene66718.t1 |
| Gene Sequence |
| Protein sequence |
