Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026612.t1 | XP_013466500.1 | 94.6 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 5.60E-73 | 283.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026612.t1 | Q9C9A3 | 61.8 | 152 | 53 | 2 | 1 | 147 | 1 | 152 | 1.0e-46 | 187.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026612.t1 | A0A072VG10 | 94.6 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 4.1e-73 | 283.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene026612 | MS.gene83139 | PPI |
MS.gene62995 | MS.gene026612 | PPI |
MS.gene026612 | MS.gene82764 | PPI |
MS.gene026612 | MS.gene86494 | PPI |
MS.gene62994 | MS.gene026612 | PPI |
MS.gene026612 | MS.gene72709 | PPI |
MS.gene026612 | MS.gene82488 | PPI |
MS.gene026612 | MS.gene59148 | PPI |
MS.gene026612 | MS.gene59150 | PPI |
MS.gene026612 | MS.gene032699 | PPI |
MS.gene88333 | MS.gene026612 | PPI |
MS.gene026612 | MS.gene053111 | PPI |
MS.gene83137 | MS.gene026612 | PPI |
MS.gene83138 | MS.gene026612 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026612.t1 | MTR_1g030630 | 94.558 | 147 | 8 | 0 | 1 | 147 | 1 | 147 | 1.64e-102 | 290 |
MS.gene026612.t1 | MTR_5g025150 | 71.429 | 147 | 40 | 1 | 1 | 147 | 1 | 145 | 9.82e-77 | 224 |
MS.gene026612.t1 | MTR_7g083060 | 63.514 | 148 | 51 | 3 | 1 | 147 | 1 | 146 | 1.13e-61 | 186 |
MS.gene026612.t1 | MTR_6g003990 | 58.710 | 155 | 56 | 3 | 1 | 147 | 1 | 155 | 9.69e-60 | 182 |
MS.gene026612.t1 | MTR_3g117890 | 53.205 | 156 | 64 | 3 | 1 | 147 | 1 | 156 | 1.20e-54 | 169 |
MS.gene026612.t1 | MTR_3g087770 | 56.376 | 149 | 61 | 3 | 2 | 147 | 5 | 152 | 1.76e-53 | 166 |
MS.gene026612.t1 | MTR_4g073040 | 52.564 | 156 | 65 | 3 | 1 | 147 | 1 | 156 | 4.78e-53 | 165 |
MS.gene026612.t1 | MTR_5g022620 | 52.866 | 157 | 64 | 4 | 1 | 147 | 1 | 157 | 1.32e-51 | 161 |
MS.gene026612.t1 | MTR_5g055020 | 46.939 | 147 | 78 | 0 | 1 | 147 | 1 | 147 | 3.50e-50 | 157 |
MS.gene026612.t1 | MTR_8g091420 | 55.705 | 149 | 63 | 2 | 2 | 147 | 5 | 153 | 7.05e-50 | 157 |
MS.gene026612.t1 | MTR_6g003990 | 61.864 | 118 | 42 | 2 | 33 | 147 | 1 | 118 | 8.12e-49 | 153 |
MS.gene026612.t1 | MTR_3g073670 | 51.020 | 147 | 69 | 2 | 2 | 147 | 5 | 149 | 3.95e-43 | 139 |
MS.gene026612.t1 | MTR_1g078090 | 37.313 | 134 | 74 | 2 | 24 | 147 | 52 | 185 | 1.06e-27 | 101 |
MS.gene026612.t1 | MTR_6g026890 | 34.694 | 147 | 72 | 5 | 19 | 147 | 8 | 148 | 1.35e-25 | 95.1 |
MS.gene026612.t1 | MTR_2g091235 | 35.374 | 147 | 67 | 4 | 24 | 147 | 1 | 142 | 2.31e-23 | 89.4 |
MS.gene026612.t1 | MTR_3g010130 | 71.698 | 53 | 14 | 1 | 1 | 53 | 1 | 52 | 6.05e-19 | 75.9 |
MS.gene026612.t1 | MTR_6g045203 | 37.500 | 136 | 70 | 5 | 27 | 147 | 5 | 140 | 9.31e-19 | 77.4 |
MS.gene026612.t1 | MTR_1g107565 | 45.455 | 66 | 36 | 0 | 24 | 89 | 12 | 77 | 6.18e-14 | 67.8 |
MS.gene026612.t1 | MTR_2g022250 | 45.455 | 66 | 36 | 0 | 24 | 89 | 9 | 74 | 8.32e-14 | 67.8 |
MS.gene026612.t1 | MTR_4g117140 | 45.902 | 61 | 33 | 0 | 29 | 89 | 14 | 74 | 1.92e-13 | 66.6 |
MS.gene026612.t1 | MTR_7g108560 | 35.714 | 84 | 48 | 1 | 12 | 89 | 3 | 86 | 2.61e-13 | 65.9 |
MS.gene026612.t1 | MTR_4g117220 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 2.70e-13 | 66.2 |
MS.gene026612.t1 | MTR_7g013660 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 6.31e-13 | 62.0 |
MS.gene026612.t1 | MTR_1g082650 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 9.67e-13 | 64.7 |
MS.gene026612.t1 | MTR_4g094238 | 36.471 | 85 | 51 | 2 | 24 | 108 | 1 | 82 | 1.31e-12 | 60.1 |
MS.gene026612.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 25 | 89 | 4 | 68 | 1.65e-12 | 59.7 |
MS.gene026612.t1 | MTR_7g113110 | 43.548 | 62 | 35 | 0 | 29 | 90 | 37 | 98 | 3.61e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026612.t1 | AT1G22990 | 59.868 | 152 | 56 | 2 | 1 | 147 | 1 | 152 | 2.70e-63 | 191 |
MS.gene026612.t1 | AT1G71050 | 61.842 | 152 | 53 | 2 | 1 | 147 | 1 | 152 | 3.22e-60 | 183 |
MS.gene026612.t1 | AT1G22990 | 57.237 | 152 | 55 | 3 | 1 | 147 | 1 | 147 | 3.25e-58 | 178 |
MS.gene026612.t1 | AT5G17450 | 57.718 | 149 | 61 | 2 | 1 | 147 | 1 | 149 | 4.66e-56 | 172 |
MS.gene026612.t1 | AT4G38580 | 51.634 | 153 | 68 | 3 | 1 | 147 | 1 | 153 | 2.12e-50 | 158 |
MS.gene026612.t1 | AT4G38580 | 51.634 | 153 | 68 | 3 | 1 | 147 | 1 | 153 | 2.12e-50 | 158 |
MS.gene026612.t1 | AT4G39700 | 53.896 | 154 | 63 | 2 | 2 | 147 | 5 | 158 | 2.07e-47 | 150 |
MS.gene026612.t1 | AT5G66110 | 52.857 | 140 | 60 | 2 | 14 | 147 | 8 | 147 | 4.04e-47 | 150 |
MS.gene026612.t1 | AT5G66110 | 52.857 | 140 | 60 | 2 | 14 | 147 | 8 | 147 | 4.04e-47 | 150 |
MS.gene026612.t1 | AT4G35060 | 43.791 | 153 | 80 | 2 | 1 | 147 | 1 | 153 | 2.10e-46 | 148 |
MS.gene026612.t1 | AT5G66110 | 52.066 | 121 | 52 | 2 | 33 | 147 | 1 | 121 | 1.98e-41 | 134 |
MS.gene026612.t1 | AT4G08570 | 45.946 | 148 | 76 | 3 | 2 | 147 | 5 | 150 | 2.34e-40 | 132 |
MS.gene026612.t1 | AT5G17450 | 56.122 | 98 | 42 | 1 | 51 | 147 | 8 | 105 | 1.54e-37 | 124 |
MS.gene026612.t1 | AT1G06330 | 37.013 | 154 | 63 | 4 | 24 | 147 | 1 | 150 | 7.53e-27 | 98.6 |
MS.gene026612.t1 | AT2G18196 | 36.170 | 141 | 66 | 3 | 24 | 147 | 45 | 178 | 3.57e-26 | 97.4 |
MS.gene026612.t1 | AT4G10465 | 34.211 | 152 | 90 | 2 | 6 | 147 | 32 | 183 | 7.87e-26 | 97.1 |
MS.gene026612.t1 | AT3G56891 | 36.774 | 155 | 64 | 6 | 24 | 147 | 15 | 166 | 2.87e-24 | 92.4 |
MS.gene026612.t1 | AT3G56891 | 36.986 | 146 | 58 | 6 | 33 | 147 | 1 | 143 | 3.07e-22 | 86.7 |
MS.gene026612.t1 | AT2G18196 | 35.606 | 132 | 61 | 3 | 33 | 147 | 1 | 125 | 5.03e-22 | 85.5 |
MS.gene026612.t1 | AT1G29100 | 34.228 | 149 | 66 | 5 | 26 | 147 | 4 | 147 | 2.84e-18 | 76.3 |
MS.gene026612.t1 | AT1G29100 | 33.562 | 146 | 65 | 5 | 29 | 147 | 1 | 141 | 6.40e-17 | 72.8 |
MS.gene026612.t1 | AT3G48970 | 40.146 | 137 | 67 | 6 | 26 | 147 | 2 | 138 | 6.30e-15 | 67.4 |
MS.gene026612.t1 | AT3G48970 | 40.146 | 137 | 67 | 6 | 26 | 147 | 2 | 138 | 6.30e-15 | 67.4 |
MS.gene026612.t1 | AT3G48970 | 40.146 | 137 | 67 | 6 | 26 | 147 | 4 | 140 | 6.31e-15 | 67.4 |
MS.gene026612.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 25 | 89 | 33 | 97 | 3.37e-13 | 62.0 |
MS.gene026612.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 5.94e-13 | 65.5 |
MS.gene026612.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 9.09e-13 | 64.7 |
MS.gene026612.t1 | AT5G27690 | 37.805 | 82 | 43 | 2 | 11 | 90 | 20 | 95 | 1.06e-12 | 64.3 |
MS.gene026612.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.68e-12 | 63.9 |
MS.gene026612.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.68e-12 | 63.9 |
MS.gene026612.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.68e-12 | 63.9 |
MS.gene026612.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.76e-12 | 63.9 |
MS.gene026612.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.76e-12 | 63.9 |
MS.gene026612.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 3.11e-12 | 60.1 |
MS.gene026612.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 3.11e-12 | 60.1 |
MS.gene026612.t1 | AT1G23000 | 37.879 | 66 | 41 | 0 | 24 | 89 | 72 | 137 | 2.08e-11 | 60.8 |
MS.gene026612.t1 | AT1G23000 | 37.143 | 70 | 44 | 0 | 24 | 93 | 12 | 81 | 3.02e-11 | 60.1 |
MS.gene026612.t1 | AT1G56210 | 43.077 | 65 | 37 | 0 | 29 | 93 | 44 | 108 | 9.03e-11 | 58.9 |
Find 24 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATATGCATTGTTACATTA+TGG | 0.213671 | 1.1:-16297124 | None:intergenic |
AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1.1:-16297063 | None:intergenic |
ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1.1:-16296958 | None:intergenic |
TACATTATGGAACATGCATT+AGG | 0.317863 | 1.1:-16297111 | None:intergenic |
CCATTGCATTAGGGCTAGAT+AGG | 0.321317 | 1.1:-16297053 | None:intergenic |
GGTTGAAATCAAGGTGAAAA+TGG | 0.336258 | 1.1:+16295020 | MS.gene026612:CDS |
ACATTATGGAACATGCATTA+GGG | 0.359404 | 1.1:-16297110 | None:intergenic |
GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1.1:-16297062 | None:intergenic |
CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1.1:+16296871 | MS.gene026612:CDS |
CTTGCAGACGGTTGAAATCA+AGG | 0.426981 | 1.1:+16295011 | MS.gene026612:intron |
GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1.1:-16296967 | None:intergenic |
TCATATGCTTGTGATACATA+AGG | 0.461205 | 1.1:-16296988 | None:intergenic |
AATTCTGTTGCTTACATGAA+AGG | 0.476868 | 1.1:+16295072 | MS.gene026612:CDS |
GCCATATATTCCATACAACT+TGG | 0.516330 | 1.1:+16296957 | MS.gene026612:CDS |
GAACTGATGGTAACCTGCAT+TGG | 0.520387 | 1.1:-16294922 | None:intergenic |
ATGGCTGTGAAAGAAAAGTT+AGG | 0.524948 | 1.1:+16295049 | MS.gene026612:CDS |
CATTGCATTAGGGCTAGATA+GGG | 0.551283 | 1.1:-16297052 | None:intergenic |
ATATATTCCATACAACTTGG+TGG | 0.560676 | 1.1:+16296960 | MS.gene026612:CDS |
TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1.1:+16297006 | MS.gene026612:CDS |
TTAAAGAAAATACAGAACAC+TGG | 0.609096 | 1.1:+16296916 | MS.gene026612:CDS |
CCTATCTAGCCCTAATGCAA+TGG | 0.610095 | 1.1:+16297053 | MS.gene026612:CDS |
ACATGCAGGTGTGAAGCAAG+TGG | 0.614788 | 1.1:+16296834 | MS.gene026612:intron |
TGCAGGTGTGAAGCAAGTGG+AGG | 0.674599 | 1.1:+16296837 | MS.gene026612:intron |
AAGGTGAAAATGGACTGTGA+TGG | 0.723533 | 1.1:+16295030 | MS.gene026612:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACAAATAATATTAACAAAG+AGG | - | chr1.1:16294984-16295003 | None:intergenic | 15.0% |
!! | TACGAATATAATAATTTCAT+TGG | + | chr1.1:16295938-16295957 | MS.gene026612:intron | 15.0% |
!!! | AAAAGCTTTATTGTAAATAA+TGG | + | chr1.1:16296244-16296263 | MS.gene026612:intron | 15.0% |
!!! | CTTTTTTTTCTTTCTTTTAA+TGG | - | chr1.1:16296229-16296248 | None:intergenic | 15.0% |
!!! | TTCAAAGAGTTTTAAAATTT+TGG | - | chr1.1:16295332-16295351 | None:intergenic | 15.0% |
!!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1.1:16296300-16296319 | None:intergenic | 15.0% |
!! | AATAAATGCAACAAAATACT+AGG | + | chr1.1:16296101-16296120 | MS.gene026612:intron | 20.0% |
!! | GAATTACTCTTGAATAAAAA+TGG | - | chr1.1:16296681-16296700 | None:intergenic | 20.0% |
!! | TACTTTGAATATCATACAAA+TGG | + | chr1.1:16296788-16296807 | MS.gene026612:intron | 20.0% |
!! | TATAATAATTTCATTGGACT+TGG | + | chr1.1:16295944-16295963 | MS.gene026612:intron | 20.0% |
!! | TCATTTGACAATATATAATG+AGG | - | chr1.1:16295792-16295811 | None:intergenic | 20.0% |
!! | TTGAACATTATGTTAACATT+CGG | + | chr1.1:16295379-16295398 | MS.gene026612:intron | 20.0% |
!!! | ATGCCTAAAACAATTTTATA+GGG | + | chr1.1:16295967-16295986 | MS.gene026612:intron | 20.0% |
!!! | CTGATTTCAAATGTAATTTT+TGG | - | chr1.1:16296628-16296647 | None:intergenic | 20.0% |
!!! | GCTAATAAAAACTTTGTTTT+AGG | - | chr1.1:16296271-16296290 | None:intergenic | 20.0% |
!!! | GTATTTTGTTGCATTTATTA+TGG | - | chr1.1:16296100-16296119 | None:intergenic | 20.0% |
!!! | TAACCCTATAAAATTGTTTT+AGG | - | chr1.1:16295973-16295992 | None:intergenic | 20.0% |
!!! | TCCTGGTATAATTTTTTTTA+GGG | + | chr1.1:16295520-16295539 | MS.gene026612:intron | 20.0% |
!!! | TCTGAGAAGTTATTTTTAAA+AGG | + | chr1.1:16296425-16296444 | MS.gene026612:intron | 20.0% |
!!! | TTGCAAGAGTTTTTAATAAA+TGG | - | chr1.1:16296340-16296359 | None:intergenic | 20.0% |
!!! | TTTACTTTTATGAGAATTTG+TGG | + | chr1.1:16296478-16296497 | MS.gene026612:intron | 20.0% |
!!! | TTTGAAACTTTGCAATTAAT+AGG | + | chr1.1:16295419-16295438 | MS.gene026612:intron | 20.0% |
!!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1.1:16296906-16296925 | None:intergenic | 20.0% |
! | AAAGAGGAATGAACAAAATT+TGG | - | chr1.1:16294968-16294987 | None:intergenic | 25.0% |
! | AAGAGGAATGAACAAAATTT+GGG | - | chr1.1:16294967-16294986 | None:intergenic | 25.0% |
! | AATGGAATCTAATCCATATT+TGG | + | chr1.1:16296806-16296825 | MS.gene026612:intron | 25.0% |
! | ATTAAAGACTTCAAACTTAG+TGG | + | chr1.1:16295178-16295197 | MS.gene026612:intron | 25.0% |
! | CTTCAAAAACTGCAAATTTA+AGG | - | chr1.1:16295751-16295770 | None:intergenic | 25.0% |
! | TAAAGTTCTTAAAAATGCTC+CGG | - | chr1.1:16295564-16295583 | None:intergenic | 25.0% |
! | TCCCTAAAAAAAATTATACC+AGG | - | chr1.1:16295524-16295543 | None:intergenic | 25.0% |
! | TTAAAGAAAATACAGAACAC+TGG | + | chr1.1:16296916-16296935 | MS.gene026612:CDS | 25.0% |
!! | GATGCCTAAAACAATTTTAT+AGG | + | chr1.1:16295966-16295985 | MS.gene026612:intron | 25.0% |
!!! | GTCCTGGTATAATTTTTTTT+AGG | + | chr1.1:16295519-16295538 | MS.gene026612:intron | 25.0% |
!!! | TGGTTTTTTCTTAACGTAAA+TGG | + | chr1.1:16295198-16295217 | MS.gene026612:intron | 25.0% |
AAATACACCTAACATTAGCA+TGG | + | chr1.1:16295915-16295934 | MS.gene026612:intron | 30.0% | |
AATGCAAACACTAAATGCAA+TGG | - | chr1.1:16295822-16295841 | None:intergenic | 30.0% | |
ACATTATGGAACATGCATTA+GGG | - | chr1.1:16297113-16297132 | None:intergenic | 30.0% | |
ACCAAGTTGTATGGAATATA+TGG | - | chr1.1:16296961-16296980 | None:intergenic | 30.0% | |
ATAAGATGTCTCACAAGAAT+AGG | + | chr1.1:16296013-16296032 | MS.gene026612:intron | 30.0% | |
ATATATTCCATACAACTTGG+TGG | + | chr1.1:16296960-16296979 | MS.gene026612:CDS | 30.0% | |
ATGCTAATGTTAGGTGTATT+TGG | - | chr1.1:16295916-16295935 | None:intergenic | 30.0% | |
CAAAAACTGCAAATTTAAGG+AGG | - | chr1.1:16295748-16295767 | None:intergenic | 30.0% | |
CCAATTACGATTGATATAGA+TGG | + | chr1.1:16295356-16295375 | MS.gene026612:intron | 30.0% | |
CCATCTATATCAATCGTAAT+TGG | - | chr1.1:16295359-16295378 | None:intergenic | 30.0% | |
CTATATCAATCGTAATTGGT+AGG | - | chr1.1:16295355-16295374 | None:intergenic | 30.0% | |
TACATTATGGAACATGCATT+AGG | - | chr1.1:16297114-16297133 | None:intergenic | 30.0% | |
TCATATGCTTGTGATACATA+AGG | - | chr1.1:16296991-16297010 | None:intergenic | 30.0% | |
TTGTATATTTCTCTTGCAGA+CGG | + | chr1.1:16294999-16295018 | MS.gene026612:intron | 30.0% | |
! | AAAATGACATAATTTGCGAG+AGG | + | chr1.1:16295853-16295872 | MS.gene026612:intron | 30.0% |
! | AATTCTGTTGCTTACATGAA+AGG | + | chr1.1:16295072-16295091 | MS.gene026612:CDS | 30.0% |
! | CTTTTAATGGCAAAGAACAT+TGG | - | chr1.1:16296216-16296235 | None:intergenic | 30.0% |
! | GTTTTCATCACTAAACATGT+TGG | - | chr1.1:16297091-16297110 | None:intergenic | 30.0% |
!! | CAGTATGAAAAGCATTAATG+TGG | - | chr1.1:16295893-16295912 | None:intergenic | 30.0% |
!! | TTTGCAGTTTTTGAAGATTG+AGG | + | chr1.1:16295755-16295774 | MS.gene026612:intron | 30.0% |
!!! | TTGCGTTTTTTTTCAGTTGA+TGG | - | chr1.1:16294901-16294920 | None:intergenic | 30.0% |
AGAGTAAGACTAAGAACTGA+TGG | - | chr1.1:16294938-16294957 | None:intergenic | 35.0% | |
AGCTACGTGGAAAAAAGAAA+GGG | + | chr1.1:16296138-16296157 | MS.gene026612:intron | 35.0% | |
AGTTTCTCATCCATTGCATT+AGG | - | chr1.1:16297066-16297085 | None:intergenic | 35.0% | |
ATGGCTGTGAAAGAAAAGTT+AGG | + | chr1.1:16295049-16295068 | MS.gene026612:CDS | 35.0% | |
ATTCGTACCATGCTAATGTT+AGG | - | chr1.1:16295925-16295944 | None:intergenic | 35.0% | |
CAAAGCAAAGTAACTGTTAG+TGG | + | chr1.1:16296871-16296890 | MS.gene026612:CDS | 35.0% | |
GCCATATATTCCATACAACT+TGG | + | chr1.1:16296957-16296976 | MS.gene026612:CDS | 35.0% | |
GGAATGAACAAAATTTGGGT+AGG | - | chr1.1:16294963-16294982 | None:intergenic | 35.0% | |
GGTTGAAATCAAGGTGAAAA+TGG | + | chr1.1:16295020-16295039 | MS.gene026612:CDS | 35.0% | |
GTTTCTCATCCATTGCATTA+GGG | - | chr1.1:16297065-16297084 | None:intergenic | 35.0% | |
TAGCTACGTGGAAAAAAGAA+AGG | + | chr1.1:16296137-16296156 | MS.gene026612:intron | 35.0% | |
TGAGAATTTGTGGAGAAACT+TGG | + | chr1.1:16296488-16296507 | MS.gene026612:intron | 35.0% | |
TGTTAACATTCGGTATGACT+TGG | + | chr1.1:16295389-16295408 | MS.gene026612:intron | 35.0% | |
! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1.1:16296075-16296094 | None:intergenic | 35.0% |
! | TTTTTGTTAACGAGTGCTCT+CGG | - | chr1.1:16295690-16295709 | None:intergenic | 35.0% |
AAAAAAACGCAAGCCAATGC+AGG | + | chr1.1:16294909-16294928 | MS.gene026612:CDS | 40.0% | |
CATATTTGGACCATACATGC+AGG | + | chr1.1:16296820-16296839 | MS.gene026612:intron | 40.0% | |
CATTGCATTAGGGCTAGATA+GGG | - | chr1.1:16297055-16297074 | None:intergenic | 40.0% | |
CCACGTAGCTAAGTAAGTAA+AGG | - | chr1.1:16296128-16296147 | None:intergenic | 40.0% | |
CCTTTACTTACTTAGCTACG+TGG | + | chr1.1:16296125-16296144 | MS.gene026612:intron | 40.0% | |
CTGCATGTATGGTCCAAATA+TGG | - | chr1.1:16296822-16296841 | None:intergenic | 40.0% | |
GAAACGTTAATGAGTGCTTC+CGG | + | chr1.1:16295542-16295561 | MS.gene026612:intron | 40.0% | |
GAGAACAAGCAATTTCGTTG+TGG | - | chr1.1:16295478-16295497 | None:intergenic | 40.0% | |
TCTTGAATGCCAATCACTCA+AGG | + | chr1.1:16296063-16296082 | MS.gene026612:intron | 40.0% | |
! | ATGACATAATTTGCGAGAGG+TGG | + | chr1.1:16295856-16295875 | MS.gene026612:intron | 40.0% |
! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1.1:16296935-16296954 | MS.gene026612:CDS | 40.0% |
! | GAGTTTTTCACATAACCAGC+TGG | - | chr1.1:16297024-16297043 | None:intergenic | 40.0% |
! | TTTTGTTAACGAGTGCTCTC+GGG | - | chr1.1:16295689-16295708 | None:intergenic | 40.0% |
!! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1.1:16295030-16295049 | MS.gene026612:CDS | 40.0% |
AATTTGCGAGAGGTGGAAAG+TGG | + | chr1.1:16295863-16295882 | MS.gene026612:intron | 45.0% | |
CCATTGCATTAGGGCTAGAT+AGG | - | chr1.1:16297056-16297075 | None:intergenic | 45.0% | |
CCTATCTAGCCCTAATGCAA+TGG | + | chr1.1:16297053-16297072 | MS.gene026612:CDS | 45.0% | |
CTTGCAGACGGTTGAAATCA+AGG | + | chr1.1:16295011-16295030 | MS.gene026612:intron | 45.0% | |
GAACTGATGGTAACCTGCAT+TGG | - | chr1.1:16294925-16294944 | None:intergenic | 45.0% | |
GGATAAGCCACCAAGTTGTA+TGG | - | chr1.1:16296970-16296989 | None:intergenic | 45.0% | |
TTGCTTCACACCTGCATGTA+TGG | - | chr1.1:16296833-16296852 | None:intergenic | 45.0% | |
TTTGTTAACGAGTGCTCTCG+GGG | - | chr1.1:16295688-16295707 | None:intergenic | 45.0% | |
! | TTGTTCTCTGTAGCCTTGCA+TGG | + | chr1.1:16295490-16295509 | MS.gene026612:intron | 45.0% |
!! | TATGACAAGAAAGCACCAGC+TGG | + | chr1.1:16297006-16297025 | MS.gene026612:CDS | 45.0% |
ACATGCAGGTGTGAAGCAAG+TGG | + | chr1.1:16296834-16296853 | MS.gene026612:intron | 50.0% | |
CCAGGACACATTACCATGCA+AGG | - | chr1.1:16295506-16295525 | None:intergenic | 50.0% | |
! | CCTTGCATGGTAATGTGTCC+TGG | + | chr1.1:16295503-16295522 | MS.gene026612:intron | 50.0% |
TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1.1:16296837-16296856 | MS.gene026612:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 16294856 | 16297134 | 16294856 | ID=MS.gene026612 |
chr1.1 | mRNA | 16294856 | 16297134 | 16294856 | ID=MS.gene026612.t1;Parent=MS.gene026612 |
chr1.1 | exon | 16294856 | 16294930 | 16294856 | ID=MS.gene026612.t1.exon1;Parent=MS.gene026612.t1 |
chr1.1 | CDS | 16294856 | 16294930 | 16294856 | ID=cds.MS.gene026612.t1;Parent=MS.gene026612.t1 |
chr1.1 | exon | 16295018 | 16295093 | 16295018 | ID=MS.gene026612.t1.exon2;Parent=MS.gene026612.t1 |
chr1.1 | CDS | 16295018 | 16295093 | 16295018 | ID=cds.MS.gene026612.t1;Parent=MS.gene026612.t1 |
chr1.1 | exon | 16296842 | 16297134 | 16296842 | ID=MS.gene026612.t1.exon3;Parent=MS.gene026612.t1 |
chr1.1 | CDS | 16296842 | 16297134 | 16296842 | ID=cds.MS.gene026612.t1;Parent=MS.gene026612.t1 |
Gene Sequence |
Protein sequence |