Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72709.t1 | XP_003612452.1 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 4.10E-76 | 293.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72709.t1 | Q93VP2 | 55.9 | 152 | 60 | 2 | 1 | 145 | 1 | 152 | 3.3e-42 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72709.t1 | G7K2P7 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 3.0e-76 | 293.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054556 | MS.gene72709 | 0.803768 | 2.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72709 | MS.gene86494 | PPI |
| MS.gene62995 | MS.gene72709 | PPI |
| MS.gene032699 | MS.gene72709 | PPI |
| MS.gene83138 | MS.gene72709 | PPI |
| MS.gene62994 | MS.gene72709 | PPI |
| MS.gene026612 | MS.gene72709 | PPI |
| MS.gene72709 | MS.gene82488 | PPI |
| MS.gene72709 | MS.gene59148 | PPI |
| MS.gene86494 | MS.gene72709 | PPI |
| MS.gene72709 | MS.gene59150 | PPI |
| MS.gene82764 | MS.gene72709 | PPI |
| MS.gene72709 | MS.gene053111 | PPI |
| MS.gene88333 | MS.gene72709 | PPI |
| MS.gene72709 | MS.gene83139 | PPI |
| MS.gene83137 | MS.gene72709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72709.t1 | MTR_5g025150 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 6.46e-107 | 301 |
| MS.gene72709.t1 | MTR_1g030630 | 73.469 | 147 | 37 | 1 | 1 | 145 | 1 | 147 | 2.90e-77 | 226 |
| MS.gene72709.t1 | MTR_6g003990 | 58.710 | 155 | 54 | 3 | 1 | 145 | 1 | 155 | 1.04e-59 | 182 |
| MS.gene72709.t1 | MTR_7g083060 | 60.544 | 147 | 55 | 3 | 1 | 145 | 1 | 146 | 6.38e-58 | 177 |
| MS.gene72709.t1 | MTR_3g087770 | 51.351 | 148 | 68 | 1 | 2 | 145 | 5 | 152 | 2.00e-48 | 153 |
| MS.gene72709.t1 | MTR_6g003990 | 61.864 | 118 | 42 | 2 | 31 | 145 | 1 | 118 | 7.92e-48 | 150 |
| MS.gene72709.t1 | MTR_4g073040 | 51.282 | 156 | 65 | 3 | 1 | 145 | 1 | 156 | 6.99e-47 | 149 |
| MS.gene72709.t1 | MTR_8g091420 | 53.691 | 149 | 64 | 2 | 2 | 145 | 5 | 153 | 1.84e-46 | 148 |
| MS.gene72709.t1 | MTR_5g055020 | 46.939 | 147 | 76 | 1 | 1 | 145 | 1 | 147 | 1.18e-45 | 146 |
| MS.gene72709.t1 | MTR_3g117890 | 46.795 | 156 | 72 | 3 | 1 | 145 | 1 | 156 | 4.63e-45 | 144 |
| MS.gene72709.t1 | MTR_5g022620 | 51.572 | 159 | 61 | 5 | 1 | 145 | 1 | 157 | 1.66e-44 | 143 |
| MS.gene72709.t1 | MTR_3g073670 | 46.897 | 145 | 76 | 1 | 2 | 145 | 5 | 149 | 5.53e-39 | 129 |
| MS.gene72709.t1 | MTR_1g078090 | 40.690 | 145 | 68 | 4 | 15 | 145 | 45 | 185 | 6.82e-30 | 107 |
| MS.gene72709.t1 | MTR_6g026890 | 37.500 | 144 | 76 | 5 | 15 | 145 | 6 | 148 | 6.19e-26 | 95.9 |
| MS.gene72709.t1 | MTR_2g091235 | 33.333 | 147 | 70 | 3 | 22 | 145 | 1 | 142 | 6.28e-22 | 85.5 |
| MS.gene72709.t1 | MTR_3g010130 | 69.231 | 52 | 15 | 1 | 1 | 51 | 1 | 52 | 3.59e-18 | 73.9 |
| MS.gene72709.t1 | MTR_6g045203 | 34.559 | 136 | 74 | 6 | 25 | 145 | 5 | 140 | 1.20e-17 | 74.3 |
| MS.gene72709.t1 | MTR_1g082650 | 39.189 | 74 | 45 | 0 | 22 | 95 | 9 | 82 | 6.92e-14 | 67.8 |
| MS.gene72709.t1 | MTR_4g117140 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 4.30e-13 | 65.5 |
| MS.gene72709.t1 | MTR_2g022250 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 5.35e-13 | 65.5 |
| MS.gene72709.t1 | MTR_4g117220 | 40.909 | 66 | 39 | 0 | 22 | 87 | 9 | 74 | 6.29e-13 | 65.1 |
| MS.gene72709.t1 | MTR_7g108560 | 41.538 | 65 | 38 | 0 | 23 | 87 | 22 | 86 | 9.27e-13 | 64.3 |
| MS.gene72709.t1 | MTR_7g013660 | 38.462 | 91 | 54 | 1 | 23 | 113 | 4 | 92 | 1.46e-12 | 60.8 |
| MS.gene72709.t1 | MTR_1g107565 | 39.394 | 66 | 40 | 0 | 22 | 87 | 12 | 77 | 1.50e-12 | 63.9 |
| MS.gene72709.t1 | MTR_4g094238 | 36.471 | 85 | 51 | 2 | 22 | 106 | 1 | 82 | 5.44e-12 | 58.5 |
| MS.gene72709.t1 | MTR_1g092670 | 40.000 | 65 | 39 | 0 | 23 | 87 | 4 | 68 | 2.88e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72709.t1 | AT1G22990 | 55.921 | 152 | 60 | 2 | 1 | 145 | 1 | 152 | 1.31e-57 | 176 |
| MS.gene72709.t1 | AT1G22990 | 53.289 | 152 | 59 | 3 | 1 | 145 | 1 | 147 | 1.07e-52 | 164 |
| MS.gene72709.t1 | AT1G71050 | 54.605 | 152 | 62 | 3 | 1 | 145 | 1 | 152 | 3.57e-52 | 162 |
| MS.gene72709.t1 | AT5G17450 | 55.034 | 149 | 63 | 2 | 1 | 145 | 1 | 149 | 2.36e-50 | 158 |
| MS.gene72709.t1 | AT4G39700 | 50.955 | 157 | 61 | 4 | 2 | 145 | 5 | 158 | 1.47e-43 | 141 |
| MS.gene72709.t1 | AT4G38580 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 6.01e-42 | 137 |
| MS.gene72709.t1 | AT4G38580 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 6.01e-42 | 137 |
| MS.gene72709.t1 | AT5G66110 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 1.38e-40 | 133 |
| MS.gene72709.t1 | AT5G66110 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 1.38e-40 | 133 |
| MS.gene72709.t1 | AT4G35060 | 41.176 | 153 | 82 | 3 | 1 | 145 | 1 | 153 | 1.13e-39 | 131 |
| MS.gene72709.t1 | AT4G08570 | 44.521 | 146 | 79 | 2 | 2 | 145 | 5 | 150 | 1.57e-38 | 128 |
| MS.gene72709.t1 | AT5G66110 | 52.459 | 122 | 50 | 3 | 31 | 145 | 1 | 121 | 4.44e-35 | 118 |
| MS.gene72709.t1 | AT5G17450 | 51.515 | 99 | 47 | 1 | 48 | 145 | 7 | 105 | 1.22e-32 | 111 |
| MS.gene72709.t1 | AT2G18196 | 38.065 | 155 | 81 | 4 | 3 | 145 | 27 | 178 | 2.02e-28 | 103 |
| MS.gene72709.t1 | AT4G10465 | 40.541 | 148 | 73 | 3 | 10 | 145 | 39 | 183 | 6.20e-28 | 102 |
| MS.gene72709.t1 | AT1G06330 | 37.662 | 154 | 62 | 3 | 22 | 145 | 1 | 150 | 2.25e-24 | 92.0 |
| MS.gene72709.t1 | AT2G18196 | 40.157 | 127 | 62 | 3 | 31 | 145 | 1 | 125 | 1.30e-23 | 89.4 |
| MS.gene72709.t1 | AT3G56891 | 33.117 | 154 | 71 | 5 | 22 | 145 | 15 | 166 | 1.60e-21 | 85.1 |
| MS.gene72709.t1 | AT3G56891 | 33.103 | 145 | 65 | 5 | 31 | 145 | 1 | 143 | 1.52e-19 | 79.3 |
| MS.gene72709.t1 | AT1G29100 | 30.405 | 148 | 71 | 4 | 25 | 145 | 5 | 147 | 1.50e-15 | 69.3 |
| MS.gene72709.t1 | AT3G48970 | 38.686 | 137 | 69 | 6 | 24 | 145 | 4 | 140 | 3.14e-14 | 65.9 |
| MS.gene72709.t1 | AT1G29100 | 29.452 | 146 | 71 | 4 | 27 | 145 | 1 | 141 | 3.24e-14 | 65.5 |
| MS.gene72709.t1 | AT3G48970 | 38.686 | 137 | 69 | 6 | 24 | 145 | 2 | 138 | 3.27e-14 | 65.5 |
| MS.gene72709.t1 | AT3G48970 | 38.686 | 137 | 69 | 6 | 24 | 145 | 2 | 138 | 3.27e-14 | 65.5 |
| MS.gene72709.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 23 | 87 | 33 | 97 | 4.76e-12 | 59.3 |
| MS.gene72709.t1 | AT3G06130 | 36.111 | 72 | 46 | 0 | 22 | 93 | 9 | 80 | 7.44e-12 | 62.0 |
| MS.gene72709.t1 | AT3G06130 | 36.111 | 72 | 46 | 0 | 22 | 93 | 9 | 80 | 1.09e-11 | 61.6 |
| MS.gene72709.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.06e-11 | 60.8 |
| MS.gene72709.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.06e-11 | 60.8 |
| MS.gene72709.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.06e-11 | 60.8 |
| MS.gene72709.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.36e-11 | 60.5 |
| MS.gene72709.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.36e-11 | 60.5 |
| MS.gene72709.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 23 | 88 | 3 | 68 | 4.18e-11 | 57.0 |
| MS.gene72709.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 23 | 88 | 3 | 68 | 4.18e-11 | 57.0 |
Find 31 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTATCATCTGTTCCATT+TGG | 0.247141 | 5.4:+16305052 | None:intergenic |
| AGTGGAAATAAAGGTGAAAA+TGG | 0.297522 | 5.4:-16306072 | MS.gene72709:CDS |
| CTGTGCTCTGCACCTTCCTT+AGG | 0.323100 | 5.4:+16305200 | None:intergenic |
| TCTTATCATCTGTTCCATTT+GGG | 0.328722 | 5.4:+16305053 | None:intergenic |
| CACATGATTGAACATGCATT+AGG | 0.335274 | 5.4:+16305004 | None:intergenic |
| CTTATAGACAGTGGAAATAA+AGG | 0.347942 | 5.4:-16306081 | MS.gene72709:intron |
| TCATCTGTTCCATTTGGGTT+TGG | 0.349576 | 5.4:+16305058 | None:intergenic |
| ACATGATTGAACATGCATTA+GGG | 0.359404 | 5.4:+16305005 | None:intergenic |
| CAAAGCAAGGTAACCGTGAC+TGG | 0.363196 | 5.4:-16305244 | MS.gene72709:CDS |
| TGGGAATGTGGATAGAAATA+AGG | 0.391392 | 5.4:-16305224 | MS.gene72709:CDS |
| ACCAAGTTAGCTTCAACATA+TGG | 0.451325 | 5.4:+16305157 | None:intergenic |
| GCCATATGTTGAAGCTAACT+TGG | 0.464839 | 5.4:-16305158 | MS.gene72709:CDS |
| TGCATATGCCTGTGTTATGT+AGG | 0.478193 | 5.4:+16305126 | None:intergenic |
| AATTCTGTTACTAACATGTC+AGG | 0.503481 | 5.4:-16306020 | MS.gene72709:intron |
| CTAAGGAAGGTGCAGAGCAC+AGG | 0.508118 | 5.4:-16305199 | MS.gene72709:CDS |
| AGGGTTATCATCACTGAAGA+AGG | 0.527497 | 5.4:+16305024 | None:intergenic |
| TGGATAGAAATAAGGTCCTA+AGG | 0.531057 | 5.4:-16305216 | MS.gene72709:CDS |
| TTAGCAATACCAAACCCAAA+TGG | 0.531163 | 5.4:-16305067 | MS.gene72709:CDS |
| GCATATGCCTGTGTTATGTA+GGG | 0.531267 | 5.4:+16305127 | None:intergenic |
| TGTAGGTGTGAAGGAAGTAG+AGG | 0.545264 | 5.4:-16305278 | MS.gene72709:intron |
| AAAGAAACACAAACCCATGC+AGG | 0.560046 | 5.4:-16306186 | MS.gene72709:intron |
| GGTAACCGTGACTGGGAATG+TGG | 0.560905 | 5.4:-16305236 | MS.gene72709:CDS |
| ATATGATAATGTAGGTGTGA+AGG | 0.572793 | 5.4:-16305287 | MS.gene72709:intron |
| TAGAAATAAGGTCCTAAGGA+AGG | 0.572839 | 5.4:-16305212 | MS.gene72709:CDS |
| TCTATCCACATTCCCAGTCA+CGG | 0.577046 | 5.4:+16305231 | None:intergenic |
| ATATGTTGAAGCTAACTTGG+TGG | 0.579782 | 5.4:-16305155 | MS.gene72709:CDS |
| ATGGCTGTGAAAGAAGAGTT+CGG | 0.593996 | 5.4:-16306043 | MS.gene72709:CDS |
| AAAGCAAGGTAACCGTGACT+GGG | 0.604590 | 5.4:-16305243 | MS.gene72709:CDS |
| GGTGAATAGAGAGCAAAGCA+AGG | 0.638066 | 5.4:-16305257 | MS.gene72709:CDS |
| GGCATATCCCTACATAACAC+AGG | 0.656872 | 5.4:-16305134 | MS.gene72709:CDS |
| AAGGTGAAAATGGACTGTGA+TGG | 0.710877 | 5.4:-16306062 | MS.gene72709:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATATAAAAAAAATTCTA+AGG | + | chr5.4:16305711-16305730 | None:intergenic | 10.0% |
| !! | TACATATACATAAATGAGAT+AGG | + | chr5.4:16305098-16305117 | None:intergenic | 20.0% |
| !!! | AATCAAATGGCATAATTTTT+AGG | - | chr5.4:16305270-16305289 | MS.gene72709:CDS | 20.0% |
| !!! | TTACAACAATATGATAATGT+AGG | - | chr5.4:16305941-16305960 | MS.gene72709:intron | 20.0% |
| !!! | TTTCAAGTGAATTTTAAGTA+CGG | + | chr5.4:16305361-16305380 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCTCAAATCAAA+TGG | - | chr5.4:16305257-16305276 | MS.gene72709:CDS | 20.0% |
| ! | AATGTTCATATTCTCAATGA+AGG | - | chr5.4:16305309-16305328 | MS.gene72709:intron | 25.0% |
| ! | ATAAATGAGATAGGATACAT+AGG | + | chr5.4:16305089-16305108 | None:intergenic | 25.0% |
| ! | TAAATGAGATAGGATACATA+GGG | + | chr5.4:16305088-16305107 | None:intergenic | 25.0% |
| ! | TCATATCTTCATTGATAAGT+GGG | - | chr5.4:16305731-16305750 | MS.gene72709:intron | 25.0% |
| ! | TTGATATTTCAAACGATTCT+CGG | - | chr5.4:16305632-16305651 | MS.gene72709:intron | 25.0% |
| !! | TGTTTTCTTTATAGCCAAAT+TGG | - | chr5.4:16305876-16305895 | MS.gene72709:intron | 25.0% |
| !! | TTTTGTTAGAACAACCAATT+TGG | + | chr5.4:16305893-16305912 | None:intergenic | 25.0% |
| AAATGAGATAGGATACATAG+GGG | + | chr5.4:16305087-16305106 | None:intergenic | 30.0% | |
| AATTCTGTTACTAACATGTC+AGG | - | chr5.4:16305216-16305235 | MS.gene72709:CDS | 30.0% | |
| ACATGATTGAACATGCATTA+GGG | + | chr5.4:16306234-16306253 | None:intergenic | 30.0% | |
| AGTGGAAATAAAGGTGAAAA+TGG | - | chr5.4:16305164-16305183 | MS.gene72709:CDS | 30.0% | |
| ATCTTATCATCTGTTCCATT+TGG | + | chr5.4:16306187-16306206 | None:intergenic | 30.0% | |
| CTCATATCTTCATTGATAAG+TGG | - | chr5.4:16305730-16305749 | MS.gene72709:intron | 30.0% | |
| CTTATAGACAGTGGAAATAA+AGG | - | chr5.4:16305155-16305174 | MS.gene72709:CDS | 30.0% | |
| GTTGAAACTCTATTGATCAA+CGG | - | chr5.4:16305381-16305400 | MS.gene72709:intron | 30.0% | |
| TCTTATCATCTGTTCCATTT+GGG | + | chr5.4:16306186-16306205 | None:intergenic | 30.0% | |
| TGATATTTCAAACGATTCTC+GGG | - | chr5.4:16305633-16305652 | MS.gene72709:intron | 30.0% | |
| TTCATATTCTCAATGAAGGT+GGG | - | chr5.4:16305313-16305332 | MS.gene72709:intron | 30.0% | |
| ! | AAATTCTAAGGGCAGATTAT+AGG | + | chr5.4:16305699-16305718 | None:intergenic | 30.0% |
| ! | AATTCTAAGGGCAGATTATA+GGG | + | chr5.4:16305698-16305717 | None:intergenic | 30.0% |
| ! | ATATGATAATGTAGGTGTGA+AGG | - | chr5.4:16305949-16305968 | MS.gene72709:intron | 30.0% |
| ! | ATGTTTTTCACATATCCAGA+AGG | + | chr5.4:16306145-16306164 | None:intergenic | 30.0% |
| ! | GGTGGGTTCTATAATTTATA+TGG | - | chr5.4:16305330-16305349 | MS.gene72709:intron | 30.0% |
| !!! | ATGGGTTTGTGTTTCTTTTT+TGG | + | chr5.4:16305048-16305067 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTCTTATAGACAG+TGG | - | chr5.4:16305146-16305165 | MS.gene72709:CDS | 30.0% |
| !!! | TGGGTTTGTGTTTCTTTTTT+GGG | + | chr5.4:16305047-16305066 | None:intergenic | 30.0% |
| ATATGTTGAAGCTAACTTGG+TGG | - | chr5.4:16306081-16306100 | MS.gene72709:intron | 35.0% | |
| ATGGTCTCAGCCATAAAAAT+TGG | - | chr5.4:16305565-16305584 | MS.gene72709:intron | 35.0% | |
| CACATGATTGAACATGCATT+AGG | + | chr5.4:16306235-16306254 | None:intergenic | 35.0% | |
| GTTCATATTCTCAATGAAGG+TGG | - | chr5.4:16305312-16305331 | MS.gene72709:intron | 35.0% | |
| TAGAAATAAGGTCCTAAGGA+AGG | - | chr5.4:16306024-16306043 | MS.gene72709:CDS | 35.0% | |
| TATGCAAAAAATGCACCTTC+TGG | - | chr5.4:16306127-16306146 | MS.gene72709:intron | 35.0% | |
| TGGATAGAAATAAGGTCCTA+AGG | - | chr5.4:16306020-16306039 | MS.gene72709:intron | 35.0% | |
| TGGGAATGTGGATAGAAATA+AGG | - | chr5.4:16306012-16306031 | MS.gene72709:intron | 35.0% | |
| TGGTCTCAGCCATAAAAATT+GGG | - | chr5.4:16305566-16305585 | MS.gene72709:intron | 35.0% | |
| TTAGCAATACCAAACCCAAA+TGG | - | chr5.4:16306169-16306188 | MS.gene72709:intron | 35.0% | |
| ! | ACCAAGTTAGCTTCAACATA+TGG | + | chr5.4:16306082-16306101 | None:intergenic | 35.0% |
| ! | CAGGAAAAAGAGCAAAGTTT+TGG | - | chr5.4:16306056-16306075 | MS.gene72709:CDS | 35.0% |
| !! | GCTATTTCCCCCAATTTTTA+TGG | + | chr5.4:16305578-16305597 | None:intergenic | 35.0% |
| !! | GTGTTGGTTCAACAAAAACA+AGG | - | chr5.4:16305468-16305487 | MS.gene72709:intron | 35.0% |
| !!! | GGGTTTGTGTTTCTTTTTTG+GGG | + | chr5.4:16305046-16305065 | None:intergenic | 35.0% |
| AAAGAAACACAAACCCATGC+AGG | - | chr5.4:16305050-16305069 | MS.gene72709:CDS | 40.0% | |
| AGGGTTATCATCACTGAAGA+AGG | + | chr5.4:16306215-16306234 | None:intergenic | 40.0% | |
| ATAGGGTGAACTGCTTTGAT+AGG | + | chr5.4:16305681-16305700 | None:intergenic | 40.0% | |
| ATGGCTGAGACCATGATAAT+TGG | + | chr5.4:16305559-16305578 | None:intergenic | 40.0% | |
| ATGGCTGTGAAAGAAGAGTT+CGG | - | chr5.4:16305193-16305212 | MS.gene72709:CDS | 40.0% | |
| GCATATGCCTGTGTTATGTA+GGG | + | chr5.4:16306112-16306131 | None:intergenic | 40.0% | |
| GCCATATGTTGAAGCTAACT+TGG | - | chr5.4:16306078-16306097 | MS.gene72709:intron | 40.0% | |
| GGTCTCAGCCATAAAAATTG+GGG | - | chr5.4:16305567-16305586 | MS.gene72709:intron | 40.0% | |
| GTCTCAGCCATAAAAATTGG+GGG | - | chr5.4:16305568-16305587 | MS.gene72709:intron | 40.0% | |
| TGCATATGCCTGTGTTATGT+AGG | + | chr5.4:16306113-16306132 | None:intergenic | 40.0% | |
| ! | GACACTGACATGATTTGTGT+TGG | - | chr5.4:16305452-16305471 | MS.gene72709:intron | 40.0% |
| ! | TCATCTGTTCCATTTGGGTT+TGG | + | chr5.4:16306181-16306200 | None:intergenic | 40.0% |
| !! | AAGGTGAAAATGGACTGTGA+TGG | - | chr5.4:16305174-16305193 | MS.gene72709:CDS | 40.0% |
| AAAGCAAGGTAACCGTGACT+GGG | - | chr5.4:16305993-16306012 | MS.gene72709:intron | 45.0% | |
| ATTGTGAGCGTCTACTTTCG+AGG | + | chr5.4:16305411-16305430 | None:intergenic | 45.0% | |
| CAAACGATTCTCGGGTATCT+AGG | - | chr5.4:16305641-16305660 | MS.gene72709:intron | 45.0% | |
| CGACTCGAGACCAATTATCA+TGG | - | chr5.4:16305546-16305565 | MS.gene72709:intron | 45.0% | |
| GGCATATCCCTACATAACAC+AGG | - | chr5.4:16306102-16306121 | MS.gene72709:intron | 45.0% | |
| GGCTTGTGAAAAACCTGCAT+GGG | + | chr5.4:16305066-16305085 | None:intergenic | 45.0% | |
| GGTGAATAGAGAGCAAAGCA+AGG | - | chr5.4:16305979-16305998 | MS.gene72709:intron | 45.0% | |
| TCTATCCACATTCCCAGTCA+CGG | + | chr5.4:16306008-16306027 | None:intergenic | 45.0% | |
| TGTAGGTGTGAAGGAAGTAG+AGG | - | chr5.4:16305958-16305977 | MS.gene72709:intron | 45.0% | |
| !! | TTATATAAAAAAAATTCTAA+GGG | + | chr5.4:16305710-16305729 | None:intergenic | 5.0% |
| CAAAGCAAGGTAACCGTGAC+TGG | - | chr5.4:16305992-16306011 | MS.gene72709:intron | 50.0% | |
| GGGCTTGTGAAAAACCTGCA+TGG | + | chr5.4:16305067-16305086 | None:intergenic | 50.0% | |
| GGGTGAACTGCTTTGATAGG+CGG | + | chr5.4:16305678-16305697 | None:intergenic | 50.0% | |
| TCGGGTATCTAGGTTCACGA+TGG | - | chr5.4:16305651-16305670 | MS.gene72709:intron | 50.0% | |
| CTGTGCTCTGCACCTTCCTT+AGG | + | chr5.4:16306039-16306058 | None:intergenic | 55.0% | |
| GGTAACCGTGACTGGGAATG+TGG | - | chr5.4:16306000-16306019 | MS.gene72709:intron | 55.0% | |
| ! | CTAAGGAAGGTGCAGAGCAC+AGG | - | chr5.4:16306037-16306056 | MS.gene72709:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 16305003 | 16306255 | 16305003 | ID=MS.gene72709 |
| chr5.4 | mRNA | 16305003 | 16306255 | 16305003 | ID=MS.gene72709.t1;Parent=MS.gene72709 |
| chr5.4 | exon | 16306187 | 16306255 | 16306187 | ID=MS.gene72709.t1.exon1;Parent=MS.gene72709.t1 |
| chr5.4 | CDS | 16306187 | 16306255 | 16306187 | ID=cds.MS.gene72709.t1;Parent=MS.gene72709.t1 |
| chr5.4 | exon | 16306021 | 16306096 | 16306021 | ID=MS.gene72709.t1.exon2;Parent=MS.gene72709.t1 |
| chr5.4 | CDS | 16306021 | 16306096 | 16306021 | ID=cds.MS.gene72709.t1;Parent=MS.gene72709.t1 |
| chr5.4 | exon | 16305003 | 16305295 | 16305003 | ID=MS.gene72709.t1.exon3;Parent=MS.gene72709.t1 |
| chr5.4 | CDS | 16305003 | 16305295 | 16305003 | ID=cds.MS.gene72709.t1;Parent=MS.gene72709.t1 |
| Gene Sequence |
| Protein sequence |
