Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83137.t1 | XP_013466500.1 | 96.8 | 124 | 4 | 0 | 1 | 124 | 24 | 147 | 1.40E-61 | 245.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83137.t1 | Q93VP2 | 63.2 | 125 | 45 | 1 | 1 | 124 | 28 | 152 | 3.1e-41 | 169.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83137.t1 | A0A072VG10 | 96.8 | 124 | 4 | 0 | 1 | 124 | 24 | 147 | 1.0e-61 | 245.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene83137 | MS.gene62994 | PPI |
MS.gene83137 | MS.gene82488 | PPI |
MS.gene83137 | MS.gene59150 | PPI |
MS.gene83137 | MS.gene032699 | PPI |
MS.gene83137 | MS.gene053111 | PPI |
MS.gene62994 | MS.gene83137 | PPI |
MS.gene62995 | MS.gene83137 | PPI |
MS.gene88333 | MS.gene83137 | PPI |
MS.gene83138 | MS.gene83137 | PPI |
MS.gene83137 | MS.gene83139 | PPI |
MS.gene83137 | MS.gene82764 | PPI |
MS.gene83137 | MS.gene86494 | PPI |
MS.gene83137 | MS.gene59148 | PPI |
MS.gene83137 | MS.gene026612 | PPI |
MS.gene83137 | MS.gene83138 | PPI |
MS.gene83137 | MS.gene72709 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83137.t1 | MTR_1g030630 | 96.774 | 124 | 4 | 0 | 1 | 124 | 24 | 147 | 1.61e-87 | 251 |
MS.gene83137.t1 | MTR_5g025150 | 72.581 | 124 | 34 | 0 | 1 | 124 | 22 | 145 | 1.11e-66 | 198 |
MS.gene83137.t1 | MTR_7g083060 | 64.800 | 125 | 42 | 2 | 1 | 124 | 23 | 146 | 2.34e-54 | 167 |
MS.gene83137.t1 | MTR_6g003990 | 62.992 | 127 | 44 | 2 | 1 | 124 | 29 | 155 | 4.14e-54 | 167 |
MS.gene83137.t1 | MTR_3g087770 | 60.800 | 125 | 47 | 2 | 1 | 124 | 29 | 152 | 8.61e-53 | 163 |
MS.gene83137.t1 | MTR_5g022620 | 56.923 | 130 | 50 | 2 | 1 | 124 | 28 | 157 | 1.89e-49 | 155 |
MS.gene83137.t1 | MTR_8g091420 | 58.871 | 124 | 49 | 1 | 3 | 124 | 30 | 153 | 4.37e-49 | 154 |
MS.gene83137.t1 | MTR_3g117890 | 55.303 | 132 | 51 | 2 | 1 | 124 | 25 | 156 | 3.01e-48 | 152 |
MS.gene83137.t1 | MTR_6g003990 | 61.017 | 118 | 43 | 2 | 10 | 124 | 1 | 118 | 6.97e-48 | 149 |
MS.gene83137.t1 | MTR_4g073040 | 54.615 | 130 | 53 | 2 | 1 | 124 | 27 | 156 | 3.45e-47 | 149 |
MS.gene83137.t1 | MTR_5g055020 | 49.593 | 123 | 62 | 0 | 2 | 124 | 25 | 147 | 6.67e-43 | 138 |
MS.gene83137.t1 | MTR_3g073670 | 52.459 | 122 | 57 | 1 | 4 | 124 | 28 | 149 | 8.64e-42 | 135 |
MS.gene83137.t1 | MTR_1g078090 | 37.313 | 134 | 74 | 2 | 1 | 124 | 52 | 185 | 4.10e-27 | 99.4 |
MS.gene83137.t1 | MTR_6g026890 | 33.571 | 140 | 71 | 4 | 1 | 124 | 15 | 148 | 2.31e-24 | 91.3 |
MS.gene83137.t1 | MTR_2g091235 | 35.374 | 147 | 67 | 4 | 1 | 124 | 1 | 142 | 4.40e-23 | 87.8 |
MS.gene83137.t1 | MTR_6g045203 | 37.500 | 136 | 70 | 5 | 4 | 124 | 5 | 140 | 6.04e-19 | 77.0 |
MS.gene83137.t1 | MTR_1g107565 | 45.455 | 66 | 36 | 0 | 1 | 66 | 12 | 77 | 1.94e-13 | 65.5 |
MS.gene83137.t1 | MTR_2g022250 | 45.455 | 66 | 36 | 0 | 1 | 66 | 9 | 74 | 2.33e-13 | 65.5 |
MS.gene83137.t1 | MTR_4g117140 | 45.902 | 61 | 33 | 0 | 6 | 66 | 14 | 74 | 5.07e-13 | 64.7 |
MS.gene83137.t1 | MTR_4g117220 | 43.939 | 66 | 37 | 0 | 1 | 66 | 9 | 74 | 7.81e-13 | 63.9 |
MS.gene83137.t1 | MTR_7g013660 | 43.077 | 65 | 37 | 0 | 2 | 66 | 4 | 68 | 1.16e-12 | 60.5 |
MS.gene83137.t1 | MTR_7g108560 | 41.538 | 65 | 38 | 0 | 2 | 66 | 22 | 86 | 1.70e-12 | 62.8 |
MS.gene83137.t1 | MTR_1g082650 | 40.909 | 66 | 39 | 0 | 1 | 66 | 9 | 74 | 3.61e-12 | 62.0 |
MS.gene83137.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 2 | 66 | 4 | 68 | 6.85e-12 | 57.4 |
MS.gene83137.t1 | MTR_7g113110 | 43.548 | 62 | 35 | 0 | 6 | 67 | 37 | 98 | 9.57e-12 | 60.8 |
MS.gene83137.t1 | MTR_3g010130 | 83.333 | 30 | 5 | 0 | 1 | 30 | 23 | 52 | 1.19e-11 | 56.6 |
MS.gene83137.t1 | MTR_4g094238 | 35.294 | 85 | 52 | 2 | 1 | 85 | 1 | 82 | 2.11e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83137.t1 | AT1G22990 | 63.200 | 125 | 45 | 1 | 1 | 124 | 28 | 152 | 1.26e-56 | 173 |
MS.gene83137.t1 | AT1G71050 | 64.286 | 126 | 43 | 1 | 1 | 124 | 27 | 152 | 8.33e-55 | 168 |
MS.gene83137.t1 | AT1G22990 | 60.833 | 120 | 46 | 1 | 6 | 124 | 28 | 147 | 8.80e-53 | 163 |
MS.gene83137.t1 | AT5G17450 | 60.000 | 125 | 49 | 1 | 1 | 124 | 25 | 149 | 3.73e-50 | 156 |
MS.gene83137.t1 | AT5G66110 | 53.077 | 130 | 55 | 2 | 1 | 124 | 18 | 147 | 4.99e-45 | 143 |
MS.gene83137.t1 | AT5G66110 | 53.077 | 130 | 55 | 2 | 1 | 124 | 18 | 147 | 4.99e-45 | 143 |
MS.gene83137.t1 | AT4G39700 | 59.375 | 128 | 48 | 1 | 1 | 124 | 31 | 158 | 5.08e-45 | 144 |
MS.gene83137.t1 | AT4G38580 | 51.938 | 129 | 57 | 2 | 1 | 124 | 25 | 153 | 1.29e-43 | 140 |
MS.gene83137.t1 | AT4G38580 | 51.938 | 129 | 57 | 2 | 1 | 124 | 25 | 153 | 1.29e-43 | 140 |
MS.gene83137.t1 | AT5G66110 | 51.240 | 121 | 53 | 2 | 10 | 124 | 1 | 121 | 1.01e-40 | 132 |
MS.gene83137.t1 | AT4G08570 | 50.000 | 126 | 61 | 2 | 1 | 124 | 25 | 150 | 5.30e-40 | 130 |
MS.gene83137.t1 | AT4G35060 | 43.077 | 130 | 68 | 2 | 1 | 124 | 24 | 153 | 5.20e-38 | 126 |
MS.gene83137.t1 | AT5G17450 | 56.122 | 98 | 42 | 1 | 28 | 124 | 8 | 105 | 5.91e-38 | 124 |
MS.gene83137.t1 | AT1G06330 | 37.013 | 154 | 63 | 4 | 1 | 124 | 1 | 150 | 1.58e-26 | 96.7 |
MS.gene83137.t1 | AT2G18196 | 38.235 | 136 | 70 | 3 | 1 | 124 | 45 | 178 | 1.07e-25 | 95.5 |
MS.gene83137.t1 | AT4G10465 | 36.567 | 134 | 75 | 2 | 1 | 124 | 50 | 183 | 1.40e-24 | 92.8 |
MS.gene83137.t1 | AT3G56891 | 36.129 | 155 | 65 | 6 | 1 | 124 | 15 | 166 | 2.50e-23 | 89.0 |
MS.gene83137.t1 | AT2G18196 | 35.200 | 125 | 71 | 2 | 10 | 124 | 1 | 125 | 1.36e-21 | 83.6 |
MS.gene83137.t1 | AT3G56891 | 36.301 | 146 | 59 | 6 | 10 | 124 | 1 | 143 | 2.15e-21 | 83.6 |
MS.gene83137.t1 | AT1G29100 | 33.784 | 148 | 66 | 5 | 4 | 124 | 5 | 147 | 2.78e-17 | 73.2 |
MS.gene83137.t1 | AT1G29100 | 32.877 | 146 | 66 | 5 | 6 | 124 | 1 | 141 | 7.53e-16 | 69.3 |
MS.gene83137.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 3 | 124 | 4 | 140 | 5.41e-15 | 67.0 |
MS.gene83137.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 3 | 124 | 2 | 138 | 5.83e-15 | 66.6 |
MS.gene83137.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 3 | 124 | 2 | 138 | 5.83e-15 | 66.6 |
MS.gene83137.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 2 | 66 | 33 | 97 | 1.67e-12 | 59.7 |
MS.gene83137.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 1.74e-12 | 63.2 |
MS.gene83137.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 2.83e-12 | 62.4 |
MS.gene83137.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 5.76e-12 | 61.6 |
MS.gene83137.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 5.76e-12 | 61.6 |
MS.gene83137.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 5.91e-12 | 61.6 |
MS.gene83137.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 5.91e-12 | 61.6 |
MS.gene83137.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 1 | 66 | 9 | 74 | 5.91e-12 | 61.6 |
MS.gene83137.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 2 | 67 | 3 | 68 | 7.45e-12 | 58.5 |
MS.gene83137.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 2 | 67 | 3 | 68 | 7.45e-12 | 58.5 |
MS.gene83137.t1 | AT5G27690 | 40.323 | 62 | 37 | 0 | 6 | 67 | 34 | 95 | 2.61e-11 | 59.7 |
MS.gene83137.t1 | AT1G23000 | 37.143 | 70 | 44 | 0 | 1 | 70 | 72 | 141 | 6.56e-11 | 58.5 |
Find 24 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATATGCATTGTTACATTA+TGG | 0.213671 | 1.2:-16135614 | None:intergenic |
AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1.2:-16135553 | None:intergenic |
ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1.2:-16135448 | None:intergenic |
TACATTATGGAACATGCATT+AGG | 0.317863 | 1.2:-16135601 | None:intergenic |
CCATTGCATTAGGGCTAGAT+AGG | 0.321317 | 1.2:-16135543 | None:intergenic |
GGTTGAAATCAAGGTGAAAA+TGG | 0.336258 | 1.2:+16133517 | MS.gene83137:CDS |
ACATTATGGAACATGCATTA+GGG | 0.359404 | 1.2:-16135600 | None:intergenic |
GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1.2:-16135552 | None:intergenic |
CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1.2:+16135361 | MS.gene83137:CDS |
CTTGCAGACGGTTGAAATCA+AGG | 0.426981 | 1.2:+16133508 | MS.gene83137:intron |
GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1.2:-16135457 | None:intergenic |
TCATATGCTTGTGATACATA+AGG | 0.461205 | 1.2:-16135478 | None:intergenic |
AATTCTGTTGCTTACATGAA+AGG | 0.479479 | 1.2:+16133569 | MS.gene83137:CDS |
GCCATATATTCCATACAACT+TGG | 0.516330 | 1.2:+16135447 | MS.gene83137:CDS |
CATTGCATTAGGGCTAGATA+GGG | 0.551283 | 1.2:-16135542 | None:intergenic |
ATATATTCCATACAACTTGG+TGG | 0.560676 | 1.2:+16135450 | MS.gene83137:CDS |
GAACTGATGGAAACCTGCAT+TGG | 0.579064 | 1.2:-16133419 | None:intergenic |
TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1.2:+16135496 | MS.gene83137:CDS |
TTAAAGAAAATACAGAACAC+TGG | 0.609096 | 1.2:+16135406 | MS.gene83137:CDS |
CCTATCTAGCCCTAATGCAA+TGG | 0.610095 | 1.2:+16135543 | MS.gene83137:CDS |
ACATGCAGGTGTGAAGCAAG+TGG | 0.614788 | 1.2:+16135324 | MS.gene83137:intron |
TGCAGGTGTGAAGCAAGTGG+AGG | 0.674599 | 1.2:+16135327 | MS.gene83137:intron |
ATGGCTGTGAAAGAAAAGTG+TGG | 0.685491 | 1.2:+16133546 | MS.gene83137:CDS |
AAGGTGAAAATGGACTGTGA+TGG | 0.723533 | 1.2:+16133527 | MS.gene83137:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACAAATAATATTAACAAAG+AGG | - | chr1.2:16133481-16133500 | None:intergenic | 15.0% |
!! | TACGAATATAATAATTTCAT+TGG | + | chr1.2:16134437-16134456 | MS.gene83137:intron | 15.0% |
!!! | AAAAGCTTTATTGTAAATAA+TGG | + | chr1.2:16134731-16134750 | MS.gene83137:intron | 15.0% |
!!! | CTTTTTTTTCTTTCTTTTAA+TGG | - | chr1.2:16134716-16134735 | None:intergenic | 15.0% |
!!! | TGATTTCAAATGTAATTTTT+CGG | - | chr1.2:16135117-16135136 | None:intergenic | 15.0% |
!!! | TTCAAAGAGTTTTAAAATTT+TGG | - | chr1.2:16133829-16133848 | None:intergenic | 15.0% |
!!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1.2:16134787-16134806 | None:intergenic | 15.0% |
!! | CAAAAAAACCATAATAAATG+TGG | + | chr1.2:16134588-16134607 | MS.gene83137:intron | 20.0% |
!! | GAATTACTCTTGAATAAAAA+TGG | - | chr1.2:16135171-16135190 | None:intergenic | 20.0% |
!! | TACTTTGAATATCATACAAA+TGG | + | chr1.2:16135278-16135297 | MS.gene83137:intron | 20.0% |
!! | TATAATAATTTCATTGGACT+TGG | + | chr1.2:16134443-16134462 | MS.gene83137:intron | 20.0% |
!! | TCATTTGACAATATATAATG+AGG | - | chr1.2:16134291-16134310 | None:intergenic | 20.0% |
!! | TTGAACATTATGTTAACATT+CGG | + | chr1.2:16133876-16133895 | MS.gene83137:intron | 20.0% |
!!! | CCTGGTATAATTTTTTTTTA+GGG | + | chr1.2:16134019-16134038 | MS.gene83137:intron | 20.0% |
!!! | GCTAATAAAAACTTTGTTTT+AGG | - | chr1.2:16134758-16134777 | None:intergenic | 20.0% |
!!! | TCCTGGTATAATTTTTTTTT+AGG | + | chr1.2:16134018-16134037 | MS.gene83137:intron | 20.0% |
!!! | TCTGAGAAGTTATTTTTAAA+AGG | + | chr1.2:16134914-16134933 | MS.gene83137:intron | 20.0% |
!!! | TTGCAAGAGTTTTTAATAAA+TGG | - | chr1.2:16134829-16134848 | None:intergenic | 20.0% |
!!! | TTTACTTTTATGAGAATTTG+TGG | + | chr1.2:16134967-16134986 | MS.gene83137:intron | 20.0% |
!!! | TTTGAAACTTTGCAATTAAT+AGG | + | chr1.2:16133916-16133935 | MS.gene83137:intron | 20.0% |
!!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1.2:16135396-16135415 | None:intergenic | 20.0% |
! | AAAGAGGAATGAACAAAATT+TGG | - | chr1.2:16133465-16133484 | None:intergenic | 25.0% |
! | AAGAGGAATGAACAAAATTT+GGG | - | chr1.2:16133464-16133483 | None:intergenic | 25.0% |
! | AATGGAATCTAATCCATATT+TGG | + | chr1.2:16135296-16135315 | MS.gene83137:intron | 25.0% |
! | ATTAAAGACTTCAAACTTAG+TGG | + | chr1.2:16133675-16133694 | MS.gene83137:intron | 25.0% |
! | CCCTAAAAAAAAATTATACC+AGG | - | chr1.2:16134022-16134041 | None:intergenic | 25.0% |
! | CTTCAAAAACTGCAAATTTA+AGG | - | chr1.2:16134250-16134269 | None:intergenic | 25.0% |
! | TAAAGTTCTTAAAAATGCTC+CGG | - | chr1.2:16134063-16134082 | None:intergenic | 25.0% |
! | TAACCCTATAAAATTGTTCT+AGG | - | chr1.2:16134472-16134491 | None:intergenic | 25.0% |
! | TTAAAGAAAATACAGAACAC+TGG | + | chr1.2:16135406-16135425 | MS.gene83137:CDS | 25.0% |
!! | ATGCCTAGAACAATTTTATA+GGG | + | chr1.2:16134466-16134485 | MS.gene83137:intron | 25.0% |
!!! | TGGTTTTTTCTTAACGTAAA+TGG | + | chr1.2:16133695-16133714 | MS.gene83137:intron | 25.0% |
AAATACACCTAACATTAGCA+TGG | + | chr1.2:16134414-16134433 | MS.gene83137:intron | 30.0% | |
AATGCAAACACTAAATGCAA+TGG | - | chr1.2:16134321-16134340 | None:intergenic | 30.0% | |
ACATTATGGAACATGCATTA+GGG | - | chr1.2:16135603-16135622 | None:intergenic | 30.0% | |
ACCAAGTTGTATGGAATATA+TGG | - | chr1.2:16135451-16135470 | None:intergenic | 30.0% | |
ATAAGATGTCTCACAAGAAT+AGG | + | chr1.2:16134512-16134531 | MS.gene83137:intron | 30.0% | |
ATATATTCCATACAACTTGG+TGG | + | chr1.2:16135450-16135469 | MS.gene83137:CDS | 30.0% | |
ATGCTAATGTTAGGTGTATT+TGG | - | chr1.2:16134415-16134434 | None:intergenic | 30.0% | |
CAAAAACTGCAAATTTAAGG+AGG | - | chr1.2:16134247-16134266 | None:intergenic | 30.0% | |
CCAATTACGATTGATATAGA+TGG | + | chr1.2:16133853-16133872 | MS.gene83137:intron | 30.0% | |
CCATCTATATCAATCGTAAT+TGG | - | chr1.2:16133856-16133875 | None:intergenic | 30.0% | |
CTATATCAATCGTAATTGGT+AGG | - | chr1.2:16133852-16133871 | None:intergenic | 30.0% | |
GTAAAGGACCACATTTATTA+TGG | - | chr1.2:16134599-16134618 | None:intergenic | 30.0% | |
TACATTATGGAACATGCATT+AGG | - | chr1.2:16135604-16135623 | None:intergenic | 30.0% | |
TCATATGCTTGTGATACATA+AGG | - | chr1.2:16135481-16135500 | None:intergenic | 30.0% | |
TTGTATATTTCTCTTGCAGA+CGG | + | chr1.2:16133496-16133515 | MS.gene83137:intron | 30.0% | |
! | AAAATGACATAATTTGCGAG+AGG | + | chr1.2:16134352-16134371 | MS.gene83137:intron | 30.0% |
! | AATTCTGTTGCTTACATGAA+AGG | + | chr1.2:16133569-16133588 | MS.gene83137:CDS | 30.0% |
! | CTTTTAATGGCAAAGAACAT+TGG | - | chr1.2:16134703-16134722 | None:intergenic | 30.0% |
! | GATGCCTAGAACAATTTTAT+AGG | + | chr1.2:16134465-16134484 | MS.gene83137:intron | 30.0% |
! | GTTTTCATCACTAAACATGT+TGG | - | chr1.2:16135581-16135600 | None:intergenic | 30.0% |
!! | CAGTATGAAAAGCATTAATG+TGG | - | chr1.2:16134392-16134411 | None:intergenic | 30.0% |
!! | TTTGCAGTTTTTGAAGATTG+AGG | + | chr1.2:16134254-16134273 | MS.gene83137:intron | 30.0% |
AGAGTAAGACTAAGAACTGA+TGG | - | chr1.2:16133435-16133454 | None:intergenic | 35.0% | |
AGCTACGTGGAAAAAAGAAA+GGG | + | chr1.2:16134625-16134644 | MS.gene83137:intron | 35.0% | |
AGTTTCTCATCCATTGCATT+AGG | - | chr1.2:16135556-16135575 | None:intergenic | 35.0% | |
ATTCGTACCATGCTAATGTT+AGG | - | chr1.2:16134424-16134443 | None:intergenic | 35.0% | |
CAAAGCAAAGTAACTGTTAG+TGG | + | chr1.2:16135361-16135380 | MS.gene83137:CDS | 35.0% | |
GCCATATATTCCATACAACT+TGG | + | chr1.2:16135447-16135466 | MS.gene83137:CDS | 35.0% | |
GGAATGAACAAAATTTGGGT+AGG | - | chr1.2:16133460-16133479 | None:intergenic | 35.0% | |
GGTTGAAATCAAGGTGAAAA+TGG | + | chr1.2:16133517-16133536 | MS.gene83137:CDS | 35.0% | |
GTTTCTCATCCATTGCATTA+GGG | - | chr1.2:16135555-16135574 | None:intergenic | 35.0% | |
TAGCTACGTGGAAAAAAGAA+AGG | + | chr1.2:16134624-16134643 | MS.gene83137:intron | 35.0% | |
TGTTAACATTCGGTATGACT+TGG | + | chr1.2:16133886-16133905 | MS.gene83137:intron | 35.0% | |
! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1.2:16134574-16134593 | None:intergenic | 35.0% |
! | TTTTTGTTAACGAGTGCTCT+CGG | - | chr1.2:16134189-16134208 | None:intergenic | 35.0% |
ATGGCTGTGAAAGAAAAGTG+TGG | + | chr1.2:16133546-16133565 | MS.gene83137:CDS | 40.0% | |
CATATTTGGACCATACATGC+AGG | + | chr1.2:16135310-16135329 | MS.gene83137:intron | 40.0% | |
CATTGCATTAGGGCTAGATA+GGG | - | chr1.2:16135545-16135564 | None:intergenic | 40.0% | |
CCACGTAGCTAAGTAAGTAA+AGG | - | chr1.2:16134615-16134634 | None:intergenic | 40.0% | |
CCTTTACTTACTTAGCTACG+TGG | + | chr1.2:16134612-16134631 | MS.gene83137:intron | 40.0% | |
CTGCATGTATGGTCCAAATA+TGG | - | chr1.2:16135312-16135331 | None:intergenic | 40.0% | |
GAAACGTTAATGAGTGCTTC+CGG | + | chr1.2:16134041-16134060 | MS.gene83137:intron | 40.0% | |
GAGAACAAGCAATTTCGTTG+TGG | - | chr1.2:16133976-16133995 | None:intergenic | 40.0% | |
TCTTGAATGCCAATCACTCA+AGG | + | chr1.2:16134562-16134581 | MS.gene83137:intron | 40.0% | |
! | ATGACATAATTTGCGAGAGG+TGG | + | chr1.2:16134355-16134374 | MS.gene83137:intron | 40.0% |
! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1.2:16135425-16135444 | MS.gene83137:CDS | 40.0% |
! | GAGTTTTTCACATAACCAGC+TGG | - | chr1.2:16135514-16135533 | None:intergenic | 40.0% |
! | TTTTGTTAACGAGTGCTCTC+GGG | - | chr1.2:16134188-16134207 | None:intergenic | 40.0% |
!! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1.2:16133527-16133546 | MS.gene83137:CDS | 40.0% |
AATTTGCGAGAGGTGGAAAG+TGG | + | chr1.2:16134362-16134381 | MS.gene83137:intron | 45.0% | |
CCATTGCATTAGGGCTAGAT+AGG | - | chr1.2:16135546-16135565 | None:intergenic | 45.0% | |
CCTATCTAGCCCTAATGCAA+TGG | + | chr1.2:16135543-16135562 | MS.gene83137:CDS | 45.0% | |
CTTGCAGACGGTTGAAATCA+AGG | + | chr1.2:16133508-16133527 | MS.gene83137:intron | 45.0% | |
GGATAAGCCACCAAGTTGTA+TGG | - | chr1.2:16135460-16135479 | None:intergenic | 45.0% | |
TTGCTTCACACCTGCATGTA+TGG | - | chr1.2:16135323-16135342 | None:intergenic | 45.0% | |
TTTGTTAACGAGTGCTCTCG+GGG | - | chr1.2:16134187-16134206 | None:intergenic | 45.0% | |
!! | TATGACAAGAAAGCACCAGC+TGG | + | chr1.2:16135496-16135515 | MS.gene83137:CDS | 45.0% |
!! | TTGTTCTCTCTAGCCTTGCA+TGG | + | chr1.2:16133988-16134007 | MS.gene83137:intron | 45.0% |
ACATGCAGGTGTGAAGCAAG+TGG | + | chr1.2:16135324-16135343 | MS.gene83137:intron | 50.0% | |
CCAGGACACATTACCATGCA+AGG | - | chr1.2:16134004-16134023 | None:intergenic | 50.0% | |
! | CCTTGCATGGTAATGTGTCC+TGG | + | chr1.2:16134001-16134020 | MS.gene83137:intron | 50.0% |
TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1.2:16135327-16135346 | MS.gene83137:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 16133422 | 16135624 | 16133422 | ID=MS.gene83137 |
chr1.2 | mRNA | 16133422 | 16135624 | 16133422 | ID=MS.gene83137.t1;Parent=MS.gene83137 |
chr1.2 | exon | 16133422 | 16133427 | 16133422 | ID=MS.gene83137.t1.exon1;Parent=MS.gene83137.t1 |
chr1.2 | CDS | 16133422 | 16133427 | 16133422 | ID=cds.MS.gene83137.t1;Parent=MS.gene83137.t1 |
chr1.2 | exon | 16133515 | 16133590 | 16133515 | ID=MS.gene83137.t1.exon2;Parent=MS.gene83137.t1 |
chr1.2 | CDS | 16133515 | 16133590 | 16133515 | ID=cds.MS.gene83137.t1;Parent=MS.gene83137.t1 |
chr1.2 | exon | 16135332 | 16135624 | 16135332 | ID=MS.gene83137.t1.exon3;Parent=MS.gene83137.t1 |
chr1.2 | CDS | 16135332 | 16135624 | 16135332 | ID=cds.MS.gene83137.t1;Parent=MS.gene83137.t1 |
Gene Sequence |
Protein sequence |