Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62994.t1 | XP_013466500.1 | 95.2 | 147 | 7 | 0 | 1 | 147 | 1 | 147 | 1.90E-73 | 285 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62994.t1 | Q9C9A3 | 62.5 | 152 | 52 | 2 | 1 | 147 | 1 | 152 | 3.5e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62994.t1 | A0A072VG10 | 95.2 | 147 | 7 | 0 | 1 | 147 | 1 | 147 | 1.4e-73 | 285.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83137 | MS.gene62994 | PPI |
| MS.gene62994 | MS.gene82764 | PPI |
| MS.gene62994 | MS.gene86494 | PPI |
| MS.gene88333 | MS.gene62994 | PPI |
| MS.gene62994 | MS.gene83137 | PPI |
| MS.gene62994 | MS.gene026612 | PPI |
| MS.gene62994 | MS.gene83138 | PPI |
| MS.gene62994 | MS.gene72709 | PPI |
| MS.gene83138 | MS.gene62994 | PPI |
| MS.gene62995 | MS.gene62994 | PPI |
| MS.gene62994 | MS.gene82488 | PPI |
| MS.gene62994 | MS.gene59148 | PPI |
| MS.gene62994 | MS.gene032699 | PPI |
| MS.gene62994 | MS.gene59150 | PPI |
| MS.gene62994 | MS.gene053111 | PPI |
| MS.gene62994 | MS.gene83139 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62994.t1 | MTR_1g030630 | 95.238 | 147 | 7 | 0 | 1 | 147 | 1 | 147 | 3.88e-103 | 291 |
| MS.gene62994.t1 | MTR_5g025150 | 72.109 | 147 | 39 | 1 | 1 | 147 | 1 | 145 | 2.39e-77 | 226 |
| MS.gene62994.t1 | MTR_7g083060 | 64.189 | 148 | 50 | 3 | 1 | 147 | 1 | 146 | 4.00e-62 | 187 |
| MS.gene62994.t1 | MTR_6g003990 | 59.355 | 155 | 55 | 3 | 1 | 147 | 1 | 155 | 3.39e-60 | 183 |
| MS.gene62994.t1 | MTR_3g117890 | 52.564 | 156 | 65 | 3 | 1 | 147 | 1 | 156 | 4.00e-54 | 167 |
| MS.gene62994.t1 | MTR_3g087770 | 55.705 | 149 | 62 | 3 | 2 | 147 | 5 | 152 | 3.58e-53 | 165 |
| MS.gene62994.t1 | MTR_4g073040 | 51.923 | 156 | 66 | 3 | 1 | 147 | 1 | 156 | 1.21e-52 | 164 |
| MS.gene62994.t1 | MTR_5g022620 | 53.503 | 157 | 63 | 4 | 1 | 147 | 1 | 157 | 3.42e-52 | 163 |
| MS.gene62994.t1 | MTR_5g055020 | 46.259 | 147 | 79 | 0 | 1 | 147 | 1 | 147 | 7.44e-50 | 156 |
| MS.gene62994.t1 | MTR_8g091420 | 55.034 | 149 | 64 | 2 | 2 | 147 | 5 | 153 | 1.48e-49 | 156 |
| MS.gene62994.t1 | MTR_6g003990 | 62.712 | 118 | 41 | 2 | 33 | 147 | 1 | 118 | 2.84e-49 | 154 |
| MS.gene62994.t1 | MTR_3g073670 | 50.340 | 147 | 70 | 2 | 2 | 147 | 5 | 149 | 7.05e-43 | 139 |
| MS.gene62994.t1 | MTR_1g078090 | 37.313 | 134 | 74 | 2 | 24 | 147 | 52 | 185 | 1.29e-27 | 101 |
| MS.gene62994.t1 | MTR_6g026890 | 35.374 | 147 | 71 | 5 | 19 | 147 | 8 | 148 | 3.98e-26 | 96.7 |
| MS.gene62994.t1 | MTR_2g091235 | 34.694 | 147 | 68 | 4 | 24 | 147 | 1 | 142 | 5.13e-23 | 88.6 |
| MS.gene62994.t1 | MTR_3g010130 | 73.585 | 53 | 13 | 1 | 1 | 53 | 1 | 52 | 1.72e-19 | 77.4 |
| MS.gene62994.t1 | MTR_6g045203 | 36.765 | 136 | 71 | 5 | 27 | 147 | 5 | 140 | 9.41e-19 | 77.4 |
| MS.gene62994.t1 | MTR_7g108560 | 36.905 | 84 | 47 | 1 | 12 | 89 | 3 | 86 | 6.53e-14 | 67.4 |
| MS.gene62994.t1 | MTR_1g107565 | 43.939 | 66 | 37 | 0 | 24 | 89 | 12 | 77 | 1.12e-13 | 67.0 |
| MS.gene62994.t1 | MTR_2g022250 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 1.33e-13 | 67.0 |
| MS.gene62994.t1 | MTR_4g117140 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 3.07e-13 | 66.2 |
| MS.gene62994.t1 | MTR_4g094238 | 37.647 | 85 | 50 | 2 | 24 | 108 | 1 | 82 | 3.62e-13 | 61.6 |
| MS.gene62994.t1 | MTR_4g117220 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 4.50e-13 | 65.5 |
| MS.gene62994.t1 | MTR_7g013660 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 6.04e-13 | 62.0 |
| MS.gene62994.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 25 | 89 | 4 | 68 | 1.51e-12 | 59.7 |
| MS.gene62994.t1 | MTR_1g082650 | 39.394 | 66 | 40 | 0 | 24 | 89 | 9 | 74 | 1.52e-12 | 63.9 |
| MS.gene62994.t1 | MTR_7g113110 | 41.935 | 62 | 36 | 0 | 29 | 90 | 37 | 98 | 7.49e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62994.t1 | AT1G22990 | 59.211 | 152 | 57 | 2 | 1 | 147 | 1 | 152 | 5.88e-63 | 190 |
| MS.gene62994.t1 | AT1G71050 | 62.500 | 152 | 52 | 2 | 1 | 147 | 1 | 152 | 7.68e-61 | 184 |
| MS.gene62994.t1 | AT1G22990 | 56.579 | 152 | 56 | 3 | 1 | 147 | 1 | 147 | 6.61e-58 | 177 |
| MS.gene62994.t1 | AT5G17450 | 58.389 | 149 | 60 | 2 | 1 | 147 | 1 | 149 | 5.14e-56 | 172 |
| MS.gene62994.t1 | AT4G38580 | 50.980 | 153 | 69 | 3 | 1 | 147 | 1 | 153 | 5.62e-50 | 157 |
| MS.gene62994.t1 | AT4G38580 | 50.980 | 153 | 69 | 3 | 1 | 147 | 1 | 153 | 5.62e-50 | 157 |
| MS.gene62994.t1 | AT5G66110 | 53.571 | 140 | 59 | 2 | 14 | 147 | 8 | 147 | 1.02e-47 | 151 |
| MS.gene62994.t1 | AT5G66110 | 53.571 | 140 | 59 | 2 | 14 | 147 | 8 | 147 | 1.02e-47 | 151 |
| MS.gene62994.t1 | AT4G39700 | 53.247 | 154 | 64 | 2 | 2 | 147 | 5 | 158 | 4.13e-47 | 150 |
| MS.gene62994.t1 | AT4G35060 | 43.137 | 153 | 81 | 2 | 1 | 147 | 1 | 153 | 7.96e-46 | 147 |
| MS.gene62994.t1 | AT5G66110 | 52.893 | 121 | 51 | 2 | 33 | 147 | 1 | 121 | 5.29e-42 | 136 |
| MS.gene62994.t1 | AT4G08570 | 45.270 | 148 | 77 | 3 | 2 | 147 | 5 | 150 | 4.69e-40 | 132 |
| MS.gene62994.t1 | AT5G17450 | 56.122 | 98 | 42 | 1 | 51 | 147 | 8 | 105 | 1.76e-37 | 124 |
| MS.gene62994.t1 | AT1G06330 | 37.662 | 154 | 62 | 4 | 24 | 147 | 1 | 150 | 2.26e-27 | 99.8 |
| MS.gene62994.t1 | AT2G18196 | 36.170 | 141 | 66 | 3 | 24 | 147 | 45 | 178 | 5.26e-26 | 97.1 |
| MS.gene62994.t1 | AT4G10465 | 34.211 | 152 | 90 | 2 | 6 | 147 | 32 | 183 | 1.25e-25 | 96.3 |
| MS.gene62994.t1 | AT3G56891 | 36.129 | 155 | 65 | 6 | 24 | 147 | 15 | 166 | 6.65e-24 | 91.3 |
| MS.gene62994.t1 | AT3G56891 | 36.301 | 146 | 59 | 6 | 33 | 147 | 1 | 143 | 7.19e-22 | 85.5 |
| MS.gene62994.t1 | AT2G18196 | 35.606 | 132 | 61 | 3 | 33 | 147 | 1 | 125 | 7.92e-22 | 85.1 |
| MS.gene62994.t1 | AT1G29100 | 33.557 | 149 | 67 | 5 | 26 | 147 | 4 | 147 | 6.47e-18 | 75.5 |
| MS.gene62994.t1 | AT1G29100 | 32.877 | 146 | 66 | 5 | 29 | 147 | 1 | 141 | 1.71e-16 | 71.6 |
| MS.gene62994.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 4 | 140 | 7.25e-15 | 67.4 |
| MS.gene62994.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 7.71e-15 | 67.4 |
| MS.gene62994.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 7.71e-15 | 67.4 |
| MS.gene62994.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 25 | 89 | 33 | 97 | 3.33e-13 | 62.0 |
| MS.gene62994.t1 | AT3G06130 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 9.35e-13 | 64.7 |
| MS.gene62994.t1 | AT3G06130 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 1.41e-12 | 63.9 |
| MS.gene62994.t1 | AT5G27690 | 36.585 | 82 | 44 | 2 | 11 | 90 | 20 | 95 | 2.21e-12 | 63.5 |
| MS.gene62994.t1 | AT5G19090 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 2.61e-12 | 63.5 |
| MS.gene62994.t1 | AT5G19090 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 2.61e-12 | 63.5 |
| MS.gene62994.t1 | AT5G19090 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 2.61e-12 | 63.5 |
| MS.gene62994.t1 | AT5G19090 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 2.83e-12 | 63.2 |
| MS.gene62994.t1 | AT5G19090 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 2.83e-12 | 63.2 |
| MS.gene62994.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.98e-12 | 60.1 |
| MS.gene62994.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.98e-12 | 60.1 |
| MS.gene62994.t1 | AT1G23000 | 36.364 | 66 | 42 | 0 | 24 | 89 | 72 | 137 | 3.85e-11 | 60.1 |
| MS.gene62994.t1 | AT1G23000 | 35.714 | 70 | 45 | 0 | 24 | 93 | 12 | 81 | 5.51e-11 | 59.7 |
Find 23 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGCATTGTTACATTA+TGG | 0.213671 | 1.3:-16473422 | None:intergenic |
| AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1.3:-16473361 | None:intergenic |
| ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1.3:-16473256 | None:intergenic |
| TACATTATGGAACATGCATT+AGG | 0.317863 | 1.3:-16473409 | None:intergenic |
| CCATTGCATTAGGGCTAGAT+AGG | 0.321317 | 1.3:-16473351 | None:intergenic |
| GGTTGAAATCAAAGTGAAAA+TGG | 0.341105 | 1.3:+16471283 | MS.gene62994:CDS |
| ACATTATGGAACATGCATTA+GGG | 0.359404 | 1.3:-16473408 | None:intergenic |
| GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1.3:-16473360 | None:intergenic |
| CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1.3:+16473169 | MS.gene62994:CDS |
| GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1.3:-16473265 | None:intergenic |
| TCATATGCTTGTGATACATA+AGG | 0.461205 | 1.3:-16473286 | None:intergenic |
| AATTCTGTTGCTTACATGAA+AGG | 0.476868 | 1.3:+16471335 | MS.gene62994:CDS |
| GCCATATATTCCATACAACT+TGG | 0.516330 | 1.3:+16473255 | MS.gene62994:CDS |
| ATGGCTGTGAAAGAAGAGTT+AGG | 0.528662 | 1.3:+16471312 | MS.gene62994:CDS |
| CATTGCATTAGGGCTAGATA+GGG | 0.551283 | 1.3:-16473350 | None:intergenic |
| ATATATTCCATACAACTTGG+TGG | 0.560676 | 1.3:+16473258 | MS.gene62994:CDS |
| TTAAAGAAAATTCAGAACAC+TGG | 0.571849 | 1.3:+16473214 | MS.gene62994:CDS |
| GAACTGATGGAAACCTGCAT+TGG | 0.579064 | 1.3:-16471185 | None:intergenic |
| TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1.3:+16473304 | MS.gene62994:CDS |
| CCTATCTAGCCCTAATGCAA+TGG | 0.610095 | 1.3:+16473351 | MS.gene62994:CDS |
| ACATGCAGGTGTGAAGCAAG+TGG | 0.614788 | 1.3:+16473132 | MS.gene62994:intron |
| TGCAGGTGTGAAGCAAGTGG+AGG | 0.674599 | 1.3:+16473135 | MS.gene62994:intron |
| AAAGTGAAAATGGACTGTGA+TGG | 0.706139 | 1.3:+16471293 | MS.gene62994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTCTTTTAA+TGG | - | chr1.3:16472524-16472543 | None:intergenic | 10.0% |
| !! | TACAAATAATATTAACAAAG+AGG | - | chr1.3:16471247-16471266 | None:intergenic | 15.0% |
| !! | TACGAATATAATAATTTCAT+TGG | + | chr1.3:16472233-16472252 | MS.gene62994:intron | 15.0% |
| !! | TCAAAAAAAAAAAAATGCAA+TGG | - | chr1.3:16472085-16472104 | None:intergenic | 15.0% |
| !!! | AAAAGCTTTATTGTAAATAA+TGG | + | chr1.3:16472540-16472559 | MS.gene62994:intron | 15.0% |
| !!! | CATTTTTAAGAACTTTAAAT+AGG | + | chr1.3:16471829-16471848 | MS.gene62994:intron | 15.0% |
| !!! | TGATTTCAAATGTAATTTTT+CGG | - | chr1.3:16472925-16472944 | None:intergenic | 15.0% |
| !!! | TTCAAAGAGTTTTAAAATTT+TGG | - | chr1.3:16471595-16471614 | None:intergenic | 15.0% |
| !!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1.3:16472596-16472615 | None:intergenic | 15.0% |
| !! | AATAAATGCAACAAAATACT+AGG | + | chr1.3:16472396-16472415 | MS.gene62994:intron | 20.0% |
| !! | GAATTACTCTTGAATAAAAA+TGG | - | chr1.3:16472979-16472998 | None:intergenic | 20.0% |
| !! | TACTTTGAATATCATACAAA+TGG | + | chr1.3:16473086-16473105 | MS.gene62994:intron | 20.0% |
| !! | TATAATAATTTCATTGGACT+TGG | + | chr1.3:16472239-16472258 | MS.gene62994:intron | 20.0% |
| !! | TCATTTGACAATATATAATG+AGG | - | chr1.3:16472055-16472074 | None:intergenic | 20.0% |
| !! | TTGAACATTATGTTAACATT+CGG | + | chr1.3:16471642-16471661 | MS.gene62994:intron | 20.0% |
| !!! | ATGCCTAAAACAATTTTATA+GGG | + | chr1.3:16472262-16472281 | MS.gene62994:intron | 20.0% |
| !!! | GCTAATAAAAACTTTGTTTT+AGG | - | chr1.3:16472567-16472586 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGCATTTATTA+TGG | - | chr1.3:16472395-16472414 | None:intergenic | 20.0% |
| !!! | TAACCCTATAAAATTGTTTT+AGG | - | chr1.3:16472268-16472287 | None:intergenic | 20.0% |
| !!! | TCCTGGTATAATTTTTTTTA+GGG | + | chr1.3:16471782-16471801 | MS.gene62994:intron | 20.0% |
| !!! | TCTGAGAAGTTATTTTTAAA+AGG | + | chr1.3:16472722-16472741 | MS.gene62994:intron | 20.0% |
| !!! | TTGCAAGAGTTTTTAATAAA+TGG | - | chr1.3:16472637-16472656 | None:intergenic | 20.0% |
| !!! | TTTACTTTTATGAGAATTTG+TGG | + | chr1.3:16472775-16472794 | MS.gene62994:intron | 20.0% |
| !!! | TTTGAAACTTTGCAATTAAT+AGG | + | chr1.3:16471682-16471701 | MS.gene62994:intron | 20.0% |
| !!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1.3:16473204-16473223 | None:intergenic | 20.0% |
| ! | AAAGAGGAATGAACAAAATT+TGG | - | chr1.3:16471231-16471250 | None:intergenic | 25.0% |
| ! | AAGAGGAATGAACAAAATTT+GGG | - | chr1.3:16471230-16471249 | None:intergenic | 25.0% |
| ! | AATGGAATCTAATCCATATT+TGG | + | chr1.3:16473104-16473123 | MS.gene62994:intron | 25.0% |
| ! | ATTAAAGACTTCAAACTTAG+TGG | + | chr1.3:16471441-16471460 | MS.gene62994:intron | 25.0% |
| ! | CTTCAAAAACTGCAAATTTA+AGG | - | chr1.3:16472014-16472033 | None:intergenic | 25.0% |
| ! | TAAAGTTCTTAAAAATGCTC+CGG | - | chr1.3:16471826-16471845 | None:intergenic | 25.0% |
| ! | TCCCTAAAAAAAATTATACC+AGG | - | chr1.3:16471786-16471805 | None:intergenic | 25.0% |
| ! | TTAAAGAAAATTCAGAACAC+TGG | + | chr1.3:16473214-16473233 | MS.gene62994:CDS | 25.0% |
| !! | GATGCCTAAAACAATTTTAT+AGG | + | chr1.3:16472261-16472280 | MS.gene62994:intron | 25.0% |
| !!! | GTCCTGGTATAATTTTTTTT+AGG | + | chr1.3:16471781-16471800 | MS.gene62994:intron | 25.0% |
| !!! | TAGTATGAAAAGCATTAATG+TGG | - | chr1.3:16472188-16472207 | None:intergenic | 25.0% |
| !!! | TGGTTTTTTCTTAACGTAAA+TGG | + | chr1.3:16471461-16471480 | MS.gene62994:intron | 25.0% |
| AAATACACCTAACATTAGCA+TGG | + | chr1.3:16472210-16472229 | MS.gene62994:intron | 30.0% | |
| AATGCAAACACTAAATGCAA+TGG | - | chr1.3:16472117-16472136 | None:intergenic | 30.0% | |
| ACATTATGGAACATGCATTA+GGG | - | chr1.3:16473411-16473430 | None:intergenic | 30.0% | |
| ACCAAGTTGTATGGAATATA+TGG | - | chr1.3:16473259-16473278 | None:intergenic | 30.0% | |
| ATAAGATGTCTCACAAGAAT+AGG | + | chr1.3:16472308-16472327 | MS.gene62994:intron | 30.0% | |
| ATATATTCCATACAACTTGG+TGG | + | chr1.3:16473258-16473277 | MS.gene62994:CDS | 30.0% | |
| ATGCTAATGTTAGGTGTATT+TGG | - | chr1.3:16472211-16472230 | None:intergenic | 30.0% | |
| CAAAAACTGCAAATTTAAGG+AGG | - | chr1.3:16472011-16472030 | None:intergenic | 30.0% | |
| CCAATTACGATTGATATAGA+TGG | + | chr1.3:16471619-16471638 | MS.gene62994:intron | 30.0% | |
| CCATCTATATCAATCGTAAT+TGG | - | chr1.3:16471622-16471641 | None:intergenic | 30.0% | |
| CTATATCAATCGTAATTGGT+AGG | - | chr1.3:16471618-16471637 | None:intergenic | 30.0% | |
| GGTTGAAATCAAAGTGAAAA+TGG | + | chr1.3:16471283-16471302 | MS.gene62994:CDS | 30.0% | |
| TACATTATGGAACATGCATT+AGG | - | chr1.3:16473412-16473431 | None:intergenic | 30.0% | |
| TCATATGCTTGTGATACATA+AGG | - | chr1.3:16473289-16473308 | None:intergenic | 30.0% | |
| TTGTATATTTCTCTTGCAGA+CGG | + | chr1.3:16471262-16471281 | MS.gene62994:intron | 30.0% | |
| ! | AAAATGACATAATTTGCGAG+AGG | + | chr1.3:16472148-16472167 | MS.gene62994:intron | 30.0% |
| ! | AATTCTGTTGCTTACATGAA+AGG | + | chr1.3:16471335-16471354 | MS.gene62994:CDS | 30.0% |
| ! | CTTTTAATGGCAAAGAACAT+TGG | - | chr1.3:16472511-16472530 | None:intergenic | 30.0% |
| ! | GTTTTCATCACTAAACATGT+TGG | - | chr1.3:16473389-16473408 | None:intergenic | 30.0% |
| !! | TTTGCAGTTTTTGAAGATTG+AGG | + | chr1.3:16472018-16472037 | MS.gene62994:intron | 30.0% |
| !!! | TTGCGTTTTTTTTCAGTTGA+TGG | - | chr1.3:16471164-16471183 | None:intergenic | 30.0% |
| AGAGTAAGACTAAGAACTGA+TGG | - | chr1.3:16471201-16471220 | None:intergenic | 35.0% | |
| AGCTACGTGGAAAAAAGAAA+GGG | + | chr1.3:16472433-16472452 | MS.gene62994:intron | 35.0% | |
| AGTTTCTCATCCATTGCATT+AGG | - | chr1.3:16473364-16473383 | None:intergenic | 35.0% | |
| ATTCGTACCATGCTAATGTT+AGG | - | chr1.3:16472220-16472239 | None:intergenic | 35.0% | |
| CAAAGCAAAGTAACTGTTAG+TGG | + | chr1.3:16473169-16473188 | MS.gene62994:CDS | 35.0% | |
| GCCATATATTCCATACAACT+TGG | + | chr1.3:16473255-16473274 | MS.gene62994:CDS | 35.0% | |
| GGAATGAACAAAATTTGGGT+AGG | - | chr1.3:16471226-16471245 | None:intergenic | 35.0% | |
| GTTTCTCATCCATTGCATTA+GGG | - | chr1.3:16473363-16473382 | None:intergenic | 35.0% | |
| TAGCTACGTGGAAAAAAGAA+AGG | + | chr1.3:16472432-16472451 | MS.gene62994:intron | 35.0% | |
| TGTTAACATTCGGTATGACT+TGG | + | chr1.3:16471652-16471671 | MS.gene62994:intron | 35.0% | |
| ! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1.3:16472370-16472389 | None:intergenic | 35.0% |
| ! | TTTTTGTTAACGAGTGCTCT+CGG | - | chr1.3:16471953-16471972 | None:intergenic | 35.0% |
| !! | AAAGTGAAAATGGACTGTGA+TGG | + | chr1.3:16471293-16471312 | MS.gene62994:CDS | 35.0% |
| AAAAAAACGCAAGCCAATGC+AGG | + | chr1.3:16471172-16471191 | MS.gene62994:CDS | 40.0% | |
| ATGGCTGTGAAAGAAGAGTT+AGG | + | chr1.3:16471312-16471331 | MS.gene62994:CDS | 40.0% | |
| CATATTTGGACCATACATGC+AGG | + | chr1.3:16473118-16473137 | MS.gene62994:intron | 40.0% | |
| CATTGCATTAGGGCTAGATA+GGG | - | chr1.3:16473353-16473372 | None:intergenic | 40.0% | |
| CCACGTAGCTAAGTAAGTAA+AGG | - | chr1.3:16472423-16472442 | None:intergenic | 40.0% | |
| CCTTTACTTACTTAGCTACG+TGG | + | chr1.3:16472420-16472439 | MS.gene62994:intron | 40.0% | |
| CTGCATGTATGGTCCAAATA+TGG | - | chr1.3:16473120-16473139 | None:intergenic | 40.0% | |
| GAAACGTTAATGAGTGCTTC+CGG | + | chr1.3:16471804-16471823 | MS.gene62994:intron | 40.0% | |
| GAGAACAAGCAATTTCGTTG+TGG | - | chr1.3:16471740-16471759 | None:intergenic | 40.0% | |
| TCTTGAATGCCAATCACTCA+AGG | + | chr1.3:16472358-16472377 | MS.gene62994:intron | 40.0% | |
| ! | ATGACATAATTTGCGAGAGG+TGG | + | chr1.3:16472151-16472170 | MS.gene62994:intron | 40.0% |
| ! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1.3:16473233-16473252 | MS.gene62994:CDS | 40.0% |
| ! | GAGTTTTTCACATAACCAGC+TGG | - | chr1.3:16473322-16473341 | None:intergenic | 40.0% |
| ! | TTTTGTTAACGAGTGCTCTC+GGG | - | chr1.3:16471952-16471971 | None:intergenic | 40.0% |
| AATTTGCGAGAGGTGGAAAG+TGG | + | chr1.3:16472158-16472177 | MS.gene62994:intron | 45.0% | |
| CCATTGCATTAGGGCTAGAT+AGG | - | chr1.3:16473354-16473373 | None:intergenic | 45.0% | |
| CCTATCTAGCCCTAATGCAA+TGG | + | chr1.3:16473351-16473370 | MS.gene62994:CDS | 45.0% | |
| GAACTGATGGAAACCTGCAT+TGG | - | chr1.3:16471188-16471207 | None:intergenic | 45.0% | |
| GGATAAGCCACCAAGTTGTA+TGG | - | chr1.3:16473268-16473287 | None:intergenic | 45.0% | |
| TTGCTTCACACCTGCATGTA+TGG | - | chr1.3:16473131-16473150 | None:intergenic | 45.0% | |
| TTTGTTAACGAGTGCTCTCG+GGG | - | chr1.3:16471951-16471970 | None:intergenic | 45.0% | |
| !! | TATGACAAGAAAGCACCAGC+TGG | + | chr1.3:16473304-16473323 | MS.gene62994:CDS | 45.0% |
| !! | TTGTTCTCTCTAGCCTTGCA+TGG | + | chr1.3:16471752-16471771 | MS.gene62994:intron | 45.0% |
| ACATGCAGGTGTGAAGCAAG+TGG | + | chr1.3:16473132-16473151 | MS.gene62994:intron | 50.0% | |
| CCAGGACACATTACCATGCA+AGG | - | chr1.3:16471768-16471787 | None:intergenic | 50.0% | |
| ! | CCTTGCATGGTAATGTGTCC+TGG | + | chr1.3:16471765-16471784 | MS.gene62994:intron | 50.0% |
| TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1.3:16473135-16473154 | MS.gene62994:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16471119 | 16473432 | 16471119 | ID=MS.gene62994 |
| chr1.3 | mRNA | 16471119 | 16473432 | 16471119 | ID=MS.gene62994.t1;Parent=MS.gene62994 |
| chr1.3 | exon | 16471119 | 16471193 | 16471119 | ID=MS.gene62994.t1.exon1;Parent=MS.gene62994.t1 |
| chr1.3 | CDS | 16471119 | 16471193 | 16471119 | ID=cds.MS.gene62994.t1;Parent=MS.gene62994.t1 |
| chr1.3 | exon | 16471281 | 16471356 | 16471281 | ID=MS.gene62994.t1.exon2;Parent=MS.gene62994.t1 |
| chr1.3 | CDS | 16471281 | 16471356 | 16471281 | ID=cds.MS.gene62994.t1;Parent=MS.gene62994.t1 |
| chr1.3 | exon | 16473140 | 16473432 | 16473140 | ID=MS.gene62994.t1.exon3;Parent=MS.gene62994.t1 |
| chr1.3 | CDS | 16473140 | 16473432 | 16473140 | ID=cds.MS.gene62994.t1;Parent=MS.gene62994.t1 |
| Gene Sequence |
| Protein sequence |
