Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62995.t1 | XP_013466500.1 | 97.3 | 147 | 4 | 0 | 1 | 147 | 1 | 147 | 7.10E-76 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62995.t1 | Q93VP2 | 58.6 | 152 | 58 | 2 | 1 | 147 | 1 | 152 | 3.3e-45 | 182.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62995.t1 | A0A072VG10 | 97.3 | 147 | 4 | 0 | 1 | 147 | 1 | 147 | 5.1e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62995 | MS.gene59148 | PPI |
| MS.gene62995 | MS.gene026612 | PPI |
| MS.gene62995 | MS.gene83138 | PPI |
| MS.gene62995 | MS.gene72709 | PPI |
| MS.gene62995 | MS.gene82488 | PPI |
| MS.gene62995 | MS.gene59150 | PPI |
| MS.gene62995 | MS.gene032699 | PPI |
| MS.gene62995 | MS.gene053111 | PPI |
| MS.gene62995 | MS.gene83137 | PPI |
| MS.gene62995 | MS.gene62994 | PPI |
| MS.gene62995 | MS.gene83139 | PPI |
| MS.gene62995 | MS.gene82764 | PPI |
| MS.gene62995 | MS.gene88333 | PPI |
| MS.gene62995 | MS.gene86494 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62995.t1 | MTR_1g030630 | 97.279 | 147 | 4 | 0 | 1 | 147 | 1 | 147 | 1.36e-106 | 300 |
| MS.gene62995.t1 | MTR_5g025150 | 72.789 | 147 | 38 | 1 | 1 | 147 | 1 | 145 | 2.31e-78 | 229 |
| MS.gene62995.t1 | MTR_7g083060 | 62.838 | 148 | 52 | 3 | 1 | 147 | 1 | 146 | 1.50e-59 | 181 |
| MS.gene62995.t1 | MTR_6g003990 | 58.065 | 155 | 57 | 3 | 1 | 147 | 1 | 155 | 6.43e-59 | 180 |
| MS.gene62995.t1 | MTR_3g117890 | 52.564 | 156 | 65 | 3 | 1 | 147 | 1 | 156 | 3.60e-53 | 165 |
| MS.gene62995.t1 | MTR_3g087770 | 60.800 | 125 | 47 | 2 | 24 | 147 | 29 | 152 | 5.48e-53 | 165 |
| MS.gene62995.t1 | MTR_4g073040 | 51.923 | 156 | 66 | 3 | 1 | 147 | 1 | 156 | 7.43e-52 | 162 |
| MS.gene62995.t1 | MTR_8g091420 | 58.871 | 124 | 49 | 1 | 26 | 147 | 30 | 153 | 1.69e-49 | 156 |
| MS.gene62995.t1 | MTR_5g022620 | 52.229 | 157 | 65 | 4 | 1 | 147 | 1 | 157 | 2.02e-49 | 155 |
| MS.gene62995.t1 | MTR_6g003990 | 61.864 | 118 | 42 | 2 | 33 | 147 | 1 | 118 | 5.18e-49 | 153 |
| MS.gene62995.t1 | MTR_5g055020 | 46.259 | 147 | 79 | 0 | 1 | 147 | 1 | 147 | 1.45e-48 | 153 |
| MS.gene62995.t1 | MTR_3g073670 | 51.020 | 147 | 69 | 2 | 2 | 147 | 5 | 149 | 9.77e-43 | 139 |
| MS.gene62995.t1 | MTR_1g078090 | 37.313 | 134 | 74 | 2 | 24 | 147 | 52 | 185 | 4.98e-28 | 102 |
| MS.gene62995.t1 | MTR_6g026890 | 34.286 | 140 | 70 | 4 | 24 | 147 | 15 | 148 | 1.32e-25 | 95.1 |
| MS.gene62995.t1 | MTR_2g091235 | 35.374 | 147 | 67 | 4 | 24 | 147 | 1 | 142 | 4.86e-23 | 88.6 |
| MS.gene62995.t1 | MTR_6g045203 | 37.500 | 136 | 70 | 5 | 27 | 147 | 5 | 140 | 7.75e-19 | 77.8 |
| MS.gene62995.t1 | MTR_3g010130 | 69.811 | 53 | 15 | 1 | 1 | 53 | 1 | 52 | 1.20e-17 | 72.8 |
| MS.gene62995.t1 | MTR_1g107565 | 45.455 | 66 | 36 | 0 | 24 | 89 | 12 | 77 | 4.05e-14 | 68.6 |
| MS.gene62995.t1 | MTR_2g022250 | 45.455 | 66 | 36 | 0 | 24 | 89 | 9 | 74 | 9.70e-14 | 67.4 |
| MS.gene62995.t1 | MTR_4g117140 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 2.85e-13 | 66.2 |
| MS.gene62995.t1 | MTR_7g108560 | 41.538 | 65 | 38 | 0 | 25 | 89 | 22 | 86 | 2.89e-13 | 65.9 |
| MS.gene62995.t1 | MTR_4g117220 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 4.12e-13 | 65.9 |
| MS.gene62995.t1 | MTR_7g013660 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 4.83e-13 | 62.4 |
| MS.gene62995.t1 | MTR_1g082650 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 9.76e-13 | 64.7 |
| MS.gene62995.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 25 | 89 | 4 | 68 | 1.09e-12 | 60.1 |
| MS.gene62995.t1 | MTR_4g094238 | 35.294 | 85 | 52 | 2 | 24 | 108 | 1 | 82 | 1.46e-12 | 60.1 |
| MS.gene62995.t1 | MTR_7g113110 | 43.548 | 62 | 35 | 0 | 29 | 90 | 37 | 98 | 2.94e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62995.t1 | AT1G22990 | 58.553 | 152 | 58 | 2 | 1 | 147 | 1 | 152 | 4.69e-61 | 185 |
| MS.gene62995.t1 | AT1G71050 | 59.868 | 152 | 56 | 2 | 1 | 147 | 1 | 152 | 1.77e-58 | 179 |
| MS.gene62995.t1 | AT1G22990 | 54.730 | 148 | 65 | 2 | 1 | 147 | 1 | 147 | 3.47e-56 | 172 |
| MS.gene62995.t1 | AT5G17450 | 56.376 | 149 | 63 | 2 | 1 | 147 | 1 | 149 | 2.38e-53 | 166 |
| MS.gene62995.t1 | AT4G38580 | 50.980 | 153 | 69 | 3 | 1 | 147 | 1 | 153 | 9.11e-49 | 154 |
| MS.gene62995.t1 | AT4G38580 | 50.980 | 153 | 69 | 3 | 1 | 147 | 1 | 153 | 9.11e-49 | 154 |
| MS.gene62995.t1 | AT4G39700 | 60.150 | 133 | 49 | 1 | 19 | 147 | 26 | 158 | 1.86e-47 | 151 |
| MS.gene62995.t1 | AT4G35060 | 44.444 | 153 | 79 | 2 | 1 | 147 | 1 | 153 | 2.94e-47 | 150 |
| MS.gene62995.t1 | AT5G66110 | 54.074 | 135 | 56 | 2 | 19 | 147 | 13 | 147 | 2.98e-46 | 147 |
| MS.gene62995.t1 | AT5G66110 | 54.074 | 135 | 56 | 2 | 19 | 147 | 13 | 147 | 2.98e-46 | 147 |
| MS.gene62995.t1 | AT5G66110 | 52.066 | 121 | 52 | 2 | 33 | 147 | 1 | 121 | 3.62e-41 | 134 |
| MS.gene62995.t1 | AT4G08570 | 50.794 | 126 | 60 | 2 | 24 | 147 | 25 | 150 | 9.65e-41 | 134 |
| MS.gene62995.t1 | AT5G17450 | 56.122 | 98 | 42 | 1 | 51 | 147 | 8 | 105 | 5.66e-37 | 122 |
| MS.gene62995.t1 | AT1G06330 | 37.013 | 154 | 63 | 4 | 24 | 147 | 1 | 150 | 7.13e-27 | 98.6 |
| MS.gene62995.t1 | AT2G18196 | 35.821 | 134 | 76 | 2 | 24 | 147 | 45 | 178 | 2.15e-26 | 98.2 |
| MS.gene62995.t1 | AT4G10465 | 35.971 | 139 | 79 | 2 | 19 | 147 | 45 | 183 | 1.71e-25 | 95.9 |
| MS.gene62995.t1 | AT3G56891 | 36.774 | 155 | 64 | 6 | 24 | 147 | 15 | 166 | 1.85e-24 | 92.8 |
| MS.gene62995.t1 | AT3G56891 | 36.986 | 146 | 58 | 6 | 33 | 147 | 1 | 143 | 1.97e-22 | 87.0 |
| MS.gene62995.t1 | AT2G18196 | 35.200 | 125 | 71 | 2 | 33 | 147 | 1 | 125 | 3.09e-22 | 85.9 |
| MS.gene62995.t1 | AT1G29100 | 34.228 | 149 | 66 | 5 | 26 | 147 | 4 | 147 | 5.57e-18 | 75.5 |
| MS.gene62995.t1 | AT1G29100 | 33.562 | 146 | 65 | 5 | 29 | 147 | 1 | 141 | 1.28e-16 | 72.0 |
| MS.gene62995.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 1.14e-14 | 67.0 |
| MS.gene62995.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 1.14e-14 | 67.0 |
| MS.gene62995.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 4 | 140 | 1.18e-14 | 67.0 |
| MS.gene62995.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 25 | 89 | 33 | 97 | 1.95e-13 | 62.8 |
| MS.gene62995.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 6.18e-13 | 65.1 |
| MS.gene62995.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.11e-12 | 64.3 |
| MS.gene62995.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.69e-12 | 63.9 |
| MS.gene62995.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.69e-12 | 63.9 |
| MS.gene62995.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.69e-12 | 63.9 |
| MS.gene62995.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.81e-12 | 63.9 |
| MS.gene62995.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.81e-12 | 63.9 |
| MS.gene62995.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.68e-12 | 60.1 |
| MS.gene62995.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.68e-12 | 60.1 |
| MS.gene62995.t1 | AT5G27690 | 40.323 | 62 | 37 | 0 | 29 | 90 | 34 | 95 | 6.53e-12 | 62.0 |
| MS.gene62995.t1 | AT1G23000 | 37.879 | 66 | 41 | 0 | 24 | 89 | 72 | 137 | 3.24e-11 | 60.1 |
| MS.gene62995.t1 | AT1G23000 | 37.143 | 70 | 44 | 0 | 24 | 93 | 12 | 81 | 4.90e-11 | 59.7 |
Find 25 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCAGTTGATGGGTATTC+AGG | 0.224406 | 1.3:-16413766 | None:intergenic |
| AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1.3:-16416358 | None:intergenic |
| TCATATGCTTGTGATATATA+AGG | 0.307329 | 1.3:-16416283 | None:intergenic |
| ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1.3:-16416253 | None:intergenic |
| GGTTGAAATCAAGGTGAAAA+TGG | 0.336258 | 1.3:+16413910 | MS.gene62995:CDS |
| ACATGATGGAACATGCATTA+GGG | 0.371774 | 1.3:-16416405 | None:intergenic |
| TTCCCTGAATACCCATCAAC+TGG | 0.374593 | 1.3:+16413763 | MS.gene62995:CDS |
| TACATGATGGAACATGCATT+AGG | 0.388858 | 1.3:-16416406 | None:intergenic |
| GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1.3:-16416357 | None:intergenic |
| CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1.3:+16416166 | MS.gene62995:CDS |
| CTTGCAGACGGTTGAAATCA+AGG | 0.426981 | 1.3:+16413901 | MS.gene62995:intron |
| GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1.3:-16416262 | None:intergenic |
| TTCCAGTTGATGGGTATTCA+GGG | 0.463226 | 1.3:-16413765 | None:intergenic |
| ATTAATGCATTGTTACATGA+TGG | 0.474887 | 1.3:-16416419 | None:intergenic |
| ATGGATGTGAAAGAAAAGTT+AGG | 0.497945 | 1.3:+16413939 | MS.gene62995:CDS |
| AATTCTGTTGCTCACATGAA+AGG | 0.514806 | 1.3:+16413962 | MS.gene62995:CDS |
| GCCATATATTCCATACAACT+TGG | 0.516330 | 1.3:+16416252 | MS.gene62995:CDS |
| GAACTGATGAAAACCTGCAT+TGG | 0.531746 | 1.3:-16413799 | None:intergenic |
| ATATATTCCATACAACTTGG+TGG | 0.560676 | 1.3:+16416255 | MS.gene62995:CDS |
| TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1.3:+16416301 | MS.gene62995:CDS |
| TTAAAGAAAATACAGAACAC+TGG | 0.609096 | 1.3:+16416211 | MS.gene62995:CDS |
| ACTATCTAGCCCTAATGCAA+TGG | 0.620354 | 1.3:+16416348 | MS.gene62995:CDS |
| GCATGCAGGTGTGAAGCAAG+TGG | 0.652347 | 1.3:+16416129 | MS.gene62995:intron |
| AAGGTGAAAATGGACTGTGA+TGG | 0.659683 | 1.3:+16413920 | MS.gene62995:CDS |
| TGCAGGTGTGAAGCAAGTGG+AGG | 0.726031 | 1.3:+16416132 | MS.gene62995:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAACTAAGTATTAATA+GGG | - | chr1.3:16414431-16414450 | None:intergenic | 10.0% |
| !! | TTTAATAACTAAGTATTAAT+AGG | - | chr1.3:16414432-16414451 | None:intergenic | 10.0% |
| !!! | AAAGTTTTATTGTAAATAAA+TGG | + | chr1.3:16415576-16415595 | MS.gene62995:intron | 10.0% |
| !!! | TTTTAAGAATTTTTAATAAG+TGG | - | chr1.3:16415673-16415692 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTTTCTTTTAA+TGG | - | chr1.3:16415559-16415578 | None:intergenic | 10.0% |
| !! | CTTCAAAAACTAAAAATTTA+AGG | - | chr1.3:16415103-16415122 | None:intergenic | 15.0% |
| !! | TACGAATATAATAATTTCAT+AGG | + | chr1.3:16415260-16415279 | MS.gene62995:intron | 15.0% |
| !! | TTTATTTGTTTGAGTATTTA+TGG | + | chr1.3:16415846-16415865 | MS.gene62995:intron | 15.0% |
| !!! | AACTACTTTTGAATAATAAA+TGG | - | chr1.3:16416010-16416029 | None:intergenic | 15.0% |
| !!! | TTTGTGAAGTTATTTTTAAA+AGG | + | chr1.3:16415756-16415775 | MS.gene62995:intron | 15.0% |
| !!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1.3:16415632-16415651 | None:intergenic | 15.0% |
| !! | AATAAATGCAACATAATACT+AGG | + | chr1.3:16415431-16415450 | MS.gene62995:intron | 20.0% |
| !! | ATAACTAATTATTAATAGGG+CGG | - | chr1.3:16414688-16414707 | None:intergenic | 20.0% |
| !! | ATGTTATGTTATAAACAAAG+AGG | - | chr1.3:16413855-16413874 | None:intergenic | 20.0% |
| !! | CAAAAACTAAAAATTTAAGG+AGG | - | chr1.3:16415100-16415119 | None:intergenic | 20.0% |
| !! | GAATAAATACTAAAAGAGTT+TGG | - | chr1.3:16415795-16415814 | None:intergenic | 20.0% |
| !! | TACTTTCAATCTTATACATA+TGG | + | chr1.3:16416083-16416102 | MS.gene62995:intron | 20.0% |
| !! | TATAATAATTTCATAGGACT+TGG | + | chr1.3:16415266-16415285 | MS.gene62995:intron | 20.0% |
| !! | TCACATAATGAGATTATATA+AGG | - | chr1.3:16415143-16415162 | None:intergenic | 20.0% |
| !!! | AACCCTATAATTTTTGTTTT+GGG | - | chr1.3:16415295-16415314 | None:intergenic | 20.0% |
| !!! | TAACCCTATAATTTTTGTTT+TGG | - | chr1.3:16415296-16415315 | None:intergenic | 20.0% |
| !!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1.3:16416201-16416220 | None:intergenic | 20.0% |
| !!! | TTTTTAGTTTTTGAAGATTG+AGG | + | chr1.3:16415107-16415126 | MS.gene62995:intron | 20.0% |
| ! | AAAATTTATAGACCAGACTT+AGG | + | chr1.3:16414996-16415015 | MS.gene62995:intron | 25.0% |
| ! | AATGGAAACACTAAATGAAA+TGG | - | chr1.3:16415173-16415192 | None:intergenic | 25.0% |
| ! | ACAAAGCATGTAAGTTAAAT+AGG | + | chr1.3:16414361-16414380 | MS.gene62995:intron | 25.0% |
| ! | ATAACTAAGTATTAATAGGG+CGG | - | chr1.3:16414428-16414447 | None:intergenic | 25.0% |
| ! | ATAAGATGTCTCATAAGAAT+AGG | + | chr1.3:16415336-16415355 | MS.gene62995:intron | 25.0% |
| ! | ATGGTTGAACATTATGTTAA+CGG | + | chr1.3:16414216-16414235 | MS.gene62995:intron | 25.0% |
| ! | TATAACAACAAAGCCTATTA+CGG | - | chr1.3:16414524-16414543 | None:intergenic | 25.0% |
| ! | TATGGAATCTAATCCATATT+TGG | + | chr1.3:16416101-16416120 | MS.gene62995:intron | 25.0% |
| ! | TCATATGCTTGTGATATATA+AGG | - | chr1.3:16416286-16416305 | None:intergenic | 25.0% |
| ! | TGCCCAAAACAAAAATTATA+GGG | + | chr1.3:16415290-16415309 | MS.gene62995:intron | 25.0% |
| ! | TTAAAGAAAATACAGAACAC+TGG | + | chr1.3:16416211-16416230 | MS.gene62995:CDS | 25.0% |
| ! | TTGCCCAAAACAAAAATTAT+AGG | + | chr1.3:16415289-16415308 | MS.gene62995:intron | 25.0% |
| ! | TTTGAGTATTTATGGAGAAA+CGG | + | chr1.3:16415854-16415873 | MS.gene62995:intron | 25.0% |
| !! | ATCAGTCCAAACTTTTAAAT+AGG | + | chr1.3:16414955-16414974 | MS.gene62995:intron | 25.0% |
| !!! | AGTCTTTTAAGTAGTCTTTA+AGG | + | chr1.3:16414854-16414873 | MS.gene62995:intron | 25.0% |
| !!! | GTGAAGTTATTTTTAAAAGG+CGG | + | chr1.3:16415759-16415778 | MS.gene62995:intron | 25.0% |
| !!! | TGGTTTTTTCTTGACATAAA+TGG | + | chr1.3:16414039-16414058 | MS.gene62995:intron | 25.0% |
| AAAAAAACACAAACCAATGC+AGG | + | chr1.3:16413786-16413805 | MS.gene62995:CDS | 30.0% | |
| AAATACACCTAACATTAGCA+TGG | + | chr1.3:16415237-16415256 | MS.gene62995:intron | 30.0% | |
| ACCAAGTTGTATGGAATATA+TGG | - | chr1.3:16416256-16416275 | None:intergenic | 30.0% | |
| ACCTGACCTATTTAAAAGTT+TGG | - | chr1.3:16414964-16414983 | None:intergenic | 30.0% | |
| AGCTACGTTGAAAAAAGAAA+TGG | + | chr1.3:16415468-16415487 | MS.gene62995:intron | 30.0% | |
| ATAACAACAAAGCCTATTAC+GGG | - | chr1.3:16414523-16414542 | None:intergenic | 30.0% | |
| ATATATTCCATACAACTTGG+TGG | + | chr1.3:16416255-16416274 | MS.gene62995:CDS | 30.0% | |
| ATGCTAATGTTAGGTGTATT+TGG | - | chr1.3:16415238-16415257 | None:intergenic | 30.0% | |
| ATGGATGTGAAAGAAAAGTT+AGG | + | chr1.3:16413939-16413958 | MS.gene62995:CDS | 30.0% | |
| ATTGCATACTTCAAACTTAG+TGG | + | chr1.3:16414019-16414038 | MS.gene62995:intron | 30.0% | |
| TGATGACCTTAATGTAAAGT+AGG | + | chr1.3:16414913-16414932 | MS.gene62995:intron | 30.0% | |
| TTGTATATTTCTCTTGCAGA+CGG | + | chr1.3:16413889-16413908 | MS.gene62995:intron | 30.0% | |
| ! | GTTTTCATCACTAAACATGT+TGG | - | chr1.3:16416386-16416405 | None:intergenic | 30.0% |
| ! | TCCAAACTTTTAAATAGGTC+AGG | + | chr1.3:16414960-16414979 | MS.gene62995:intron | 30.0% |
| ! | TTTGTAAAAAGCATAAGCCT+AGG | - | chr1.3:16414346-16414365 | None:intergenic | 30.0% |
| !! | CTTTTCTGAAAGACTAAATC+TGG | - | chr1.3:16414387-16414406 | None:intergenic | 30.0% |
| !! | CTTTTCTGAAAGTCTAAATC+TGG | - | chr1.3:16414647-16414666 | None:intergenic | 30.0% |
| !! | GTAATAGGCTTTGTTGTTAT+AGG | + | chr1.3:16414523-16414542 | MS.gene62995:intron | 30.0% |
| !! | GTTGTTATAGGCTTTTAAGT+AGG | + | chr1.3:16414797-16414816 | MS.gene62995:intron | 30.0% |
| !!! | TGTGTTTTTTTCCAGTTGAT+GGG | - | chr1.3:16413777-16413796 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTTTTCCAGTTGA+TGG | - | chr1.3:16413778-16413797 | None:intergenic | 30.0% |
| AATTCTGTTGCTCACATGAA+AGG | + | chr1.3:16413962-16413981 | MS.gene62995:CDS | 35.0% | |
| ACATTGGCATGAATCATGTA+TGG | - | chr1.3:16415530-16415549 | None:intergenic | 35.0% | |
| AGTTTCTCATCCATTGCATT+AGG | - | chr1.3:16416361-16416380 | None:intergenic | 35.0% | |
| ATGATTCATGCCAATGTTCT+TGG | + | chr1.3:16415533-16415552 | MS.gene62995:intron | 35.0% | |
| ATTCGTACCATGCTAATGTT+AGG | - | chr1.3:16415247-16415266 | None:intergenic | 35.0% | |
| CAAAGCAAAGTAACTGTTAG+TGG | + | chr1.3:16416166-16416185 | MS.gene62995:CDS | 35.0% | |
| CAACGTAGCTAAGTAAGTAA+AGG | - | chr1.3:16415458-16415477 | None:intergenic | 35.0% | |
| GCCATATATTCCATACAACT+TGG | + | chr1.3:16416252-16416271 | MS.gene62995:CDS | 35.0% | |
| GGTTGAAATCAAGGTGAAAA+TGG | + | chr1.3:16413910-16413929 | MS.gene62995:CDS | 35.0% | |
| GTCTGTTTAGCGTATTTAGT+AGG | + | chr1.3:16414876-16414895 | MS.gene62995:intron | 35.0% | |
| GTTTCTCATCCATTGCATTA+GGG | - | chr1.3:16416360-16416379 | None:intergenic | 35.0% | |
| GTTTGACCTATTTAGTAGAG+AGG | + | chr1.3:16414320-16414339 | MS.gene62995:intron | 35.0% | |
| TTATCTATCAGTCCCGTAAT+AGG | + | chr1.3:16414508-16414527 | MS.gene62995:intron | 35.0% | |
| TTTGTAAAAAGCCTAAGCCT+AGG | - | chr1.3:16414606-16414625 | None:intergenic | 35.0% | |
| ! | AAAGAGGCGTGAACAAAATT+TGG | - | chr1.3:16413839-16413858 | None:intergenic | 35.0% |
| ! | ACATGATGGAACATGCATTA+GGG | - | chr1.3:16416408-16416427 | None:intergenic | 35.0% |
| ! | ACTTTTAAATAGGTCAGGTC+AGG | + | chr1.3:16414965-16414984 | MS.gene62995:intron | 35.0% |
| ! | CTTTTAATGGCCAAGAACAT+TGG | - | chr1.3:16415546-16415565 | None:intergenic | 35.0% |
| ! | TACATGATGGAACATGCATT+AGG | - | chr1.3:16416409-16416428 | None:intergenic | 35.0% |
| ! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1.3:16415398-16415417 | None:intergenic | 35.0% |
| !!! | GGCTCGAAGTTTTGAAATTT+TGG | - | chr1.3:16414175-16414194 | None:intergenic | 35.0% |
| ACCTTAATGTAAAGTAGGCC+TGG | + | chr1.3:16414918-16414937 | MS.gene62995:intron | 40.0% | |
| ACTATCTAGCCCTAATGCAA+TGG | + | chr1.3:16416348-16416367 | MS.gene62995:CDS | 40.0% | |
| AGACTTGAACCCAAGTGATA+CGG | - | chr1.3:16414243-16414262 | None:intergenic | 40.0% | |
| CCTAGGCTTCTCTACTAAAT+AGG | - | chr1.3:16414589-16414608 | None:intergenic | 40.0% | |
| CCTATTTAGTAGAGAAGCCT+AGG | + | chr1.3:16414586-16414605 | MS.gene62995:intron | 40.0% | |
| GAACTGATGAAAACCTGCAT+TGG | - | chr1.3:16413802-16413821 | None:intergenic | 40.0% | |
| GACTTAGGTCTTTCAAAGCT+TGG | + | chr1.3:16415011-16415030 | MS.gene62995:intron | 40.0% | |
| TCCAGGCCTACTTTACATTA+AGG | - | chr1.3:16414922-16414941 | None:intergenic | 40.0% | |
| TCTTGAACACCAATCACTCA+AGG | + | chr1.3:16415386-16415405 | MS.gene62995:intron | 40.0% | |
| TGATTTGAAAGCCTACTTCC+AGG | - | chr1.3:16414939-16414958 | None:intergenic | 40.0% | |
| TTGTGAATCCTCAACGAGTT+TGG | + | chr1.3:16414298-16414317 | MS.gene62995:intron | 40.0% | |
| ! | CTGGAAAAAGAGCAGAGTTT+TGG | + | chr1.3:16416230-16416249 | MS.gene62995:CDS | 40.0% |
| ! | GAGTTTTTCACATAACCAGC+TGG | - | chr1.3:16416319-16416338 | None:intergenic | 40.0% |
| !! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1.3:16413920-16413939 | MS.gene62995:CDS | 40.0% |
| !! | AGCTTTGAAAGACCTAAGTC+TGG | - | chr1.3:16415011-16415030 | None:intergenic | 40.0% |
| !! | TTCCAGTTGATGGGTATTCA+GGG | - | chr1.3:16413768-16413787 | None:intergenic | 40.0% |
| !! | TTTCCAGTTGATGGGTATTC+AGG | - | chr1.3:16413769-16413788 | None:intergenic | 40.0% |
| AGGTCAAACCAAACTCGTTG+AGG | - | chr1.3:16414309-16414328 | None:intergenic | 45.0% | |
| CATATTTGGACCATGCATGC+AGG | + | chr1.3:16416115-16416134 | MS.gene62995:intron | 45.0% | |
| CCAATTGCGGTTGTCATAGA+TGG | + | chr1.3:16414197-16414216 | MS.gene62995:intron | 45.0% | |
| CCATCTATGACAACCGCAAT+TGG | - | chr1.3:16414200-16414219 | None:intergenic | 45.0% | |
| CCTAGGCCTCTCTACTAAAT+AGG | - | chr1.3:16414329-16414348 | None:intergenic | 45.0% | |
| CCTATTTAGTAGAGAGGCCT+AGG | + | chr1.3:16414326-16414345 | MS.gene62995:intron | 45.0% | |
| CTATGACAACCGCAATTGGT+GGG | - | chr1.3:16414196-16414215 | None:intergenic | 45.0% | |
| CTGCATGCATGGTCCAAATA+TGG | - | chr1.3:16416117-16416136 | None:intergenic | 45.0% | |
| CTTGCAGACGGTTGAAATCA+AGG | + | chr1.3:16413901-16413920 | MS.gene62995:intron | 45.0% | |
| GACTTGAACCCAAGTGATAC+GGG | - | chr1.3:16414242-16414261 | None:intergenic | 45.0% | |
| GCTAAGAATGACACATCTCC+AGG | - | chr1.3:16415042-16415061 | None:intergenic | 45.0% | |
| GGATAAGCCACCAAGTTGTA+TGG | - | chr1.3:16416265-16416284 | None:intergenic | 45.0% | |
| GTGTTTCCATTCTTTGCGAG+AGG | + | chr1.3:16415182-16415201 | MS.gene62995:intron | 45.0% | |
| TAGTAGAGAAGCCTAGGCTT+AGG | + | chr1.3:16414592-16414611 | MS.gene62995:intron | 45.0% | |
| TCTATGACAACCGCAATTGG+TGG | - | chr1.3:16414197-16414216 | None:intergenic | 45.0% | |
| TGTAAAGTAGGCCTGGAAGT+AGG | + | chr1.3:16414925-16414944 | MS.gene62995:intron | 45.0% | |
| TTCCCTGAATACCCATCAAC+TGG | + | chr1.3:16413763-16413782 | MS.gene62995:CDS | 45.0% | |
| TTTCCACCTCTCGCAAAGAA+TGG | - | chr1.3:16415191-16415210 | None:intergenic | 45.0% | |
| TTTCCATTCTTTGCGAGAGG+TGG | + | chr1.3:16415185-16415204 | MS.gene62995:intron | 45.0% | |
| !! | TATGACAAGAAAGCACCAGC+TGG | + | chr1.3:16416301-16416320 | MS.gene62995:CDS | 45.0% |
| !! | TTAATAACTAATTATTAATA+GGG | - | chr1.3:16414691-16414710 | None:intergenic | 5.0% |
| !! | TTTAATAACTAATTATTAAT+AGG | - | chr1.3:16414692-16414711 | None:intergenic | 5.0% |
| AACTTCGAGCCCACCAATTG+CGG | + | chr1.3:16414184-16414203 | MS.gene62995:intron | 50.0% | |
| AGGTCTTTCAAAGCTTGGCC+TGG | + | chr1.3:16415016-16415035 | MS.gene62995:intron | 50.0% | |
| GTTAACGGCCCGTATCACTT+GGG | + | chr1.3:16414231-16414250 | MS.gene62995:intron | 50.0% | |
| TGTTAACGGCCCGTATCACT+TGG | + | chr1.3:16414230-16414249 | MS.gene62995:intron | 50.0% | |
| TTGCTTCACACCTGCATGCA+TGG | - | chr1.3:16416128-16416147 | None:intergenic | 50.0% | |
| GAATGACACATCTCCAGGCC+AGG | - | chr1.3:16415037-16415056 | None:intergenic | 55.0% | |
| GCATGCAGGTGTGAAGCAAG+TGG | + | chr1.3:16416129-16416148 | MS.gene62995:intron | 55.0% | |
| TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1.3:16416132-16416151 | MS.gene62995:intron | 55.0% | |
| TTTCAAAGCTTGGCCTGGCC+TGG | + | chr1.3:16415021-16415040 | MS.gene62995:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16413733 | 16416429 | 16413733 | ID=MS.gene62995 |
| chr1.3 | mRNA | 16413733 | 16416429 | 16413733 | ID=MS.gene62995.t1;Parent=MS.gene62995 |
| chr1.3 | exon | 16413733 | 16413807 | 16413733 | ID=MS.gene62995.t1.exon1;Parent=MS.gene62995.t1 |
| chr1.3 | CDS | 16413733 | 16413807 | 16413733 | ID=cds.MS.gene62995.t1;Parent=MS.gene62995.t1 |
| chr1.3 | exon | 16413908 | 16413983 | 16413908 | ID=MS.gene62995.t1.exon2;Parent=MS.gene62995.t1 |
| chr1.3 | CDS | 16413908 | 16413983 | 16413908 | ID=cds.MS.gene62995.t1;Parent=MS.gene62995.t1 |
| chr1.3 | exon | 16416137 | 16416429 | 16416137 | ID=MS.gene62995.t1.exon3;Parent=MS.gene62995.t1 |
| chr1.3 | CDS | 16416137 | 16416429 | 16416137 | ID=cds.MS.gene62995.t1;Parent=MS.gene62995.t1 |
| Gene Sequence |
| Protein sequence |
