Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86494.t1 | XP_003612452.1 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 2.40E-76 | 294.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86494.t1 | Q93VP2 | 55.3 | 152 | 61 | 2 | 1 | 145 | 1 | 152 | 4.3e-42 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86494.t1 | G7K2P7 | 99.3 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 1.7e-76 | 294.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032699 | MS.gene86494 | PPI |
| MS.gene86494 | MS.gene053111 | PPI |
| MS.gene72709 | MS.gene86494 | PPI |
| MS.gene62994 | MS.gene86494 | PPI |
| MS.gene026612 | MS.gene86494 | PPI |
| MS.gene88333 | MS.gene86494 | PPI |
| MS.gene86494 | MS.gene83139 | PPI |
| MS.gene86494 | MS.gene72709 | PPI |
| MS.gene82764 | MS.gene86494 | PPI |
| MS.gene86494 | MS.gene82488 | PPI |
| MS.gene86494 | MS.gene59148 | PPI |
| MS.gene83137 | MS.gene86494 | PPI |
| MS.gene83138 | MS.gene86494 | PPI |
| MS.gene62995 | MS.gene86494 | PPI |
| MS.gene86494 | MS.gene59150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86494.t1 | MTR_5g025150 | 99.310 | 145 | 1 | 0 | 1 | 145 | 1 | 145 | 4.35e-107 | 301 |
| MS.gene86494.t1 | MTR_1g030630 | 72.789 | 147 | 38 | 1 | 1 | 145 | 1 | 147 | 2.13e-77 | 226 |
| MS.gene86494.t1 | MTR_6g003990 | 58.065 | 155 | 55 | 3 | 1 | 145 | 1 | 155 | 1.01e-58 | 179 |
| MS.gene86494.t1 | MTR_7g083060 | 59.864 | 147 | 56 | 3 | 1 | 145 | 1 | 146 | 5.64e-57 | 174 |
| MS.gene86494.t1 | MTR_3g087770 | 50.676 | 148 | 69 | 1 | 2 | 145 | 5 | 152 | 1.42e-47 | 151 |
| MS.gene86494.t1 | MTR_6g003990 | 61.017 | 118 | 43 | 2 | 31 | 145 | 1 | 118 | 5.37e-47 | 148 |
| MS.gene86494.t1 | MTR_8g091420 | 54.362 | 149 | 63 | 2 | 2 | 145 | 5 | 153 | 1.27e-46 | 148 |
| MS.gene86494.t1 | MTR_4g073040 | 50.641 | 156 | 66 | 3 | 1 | 145 | 1 | 156 | 1.77e-46 | 148 |
| MS.gene86494.t1 | MTR_3g117890 | 47.436 | 156 | 71 | 3 | 1 | 145 | 1 | 156 | 2.62e-46 | 148 |
| MS.gene86494.t1 | MTR_5g055020 | 46.939 | 147 | 76 | 1 | 1 | 145 | 1 | 147 | 1.83e-45 | 145 |
| MS.gene86494.t1 | MTR_5g022620 | 50.314 | 159 | 63 | 4 | 1 | 145 | 1 | 157 | 8.51e-44 | 141 |
| MS.gene86494.t1 | MTR_3g073670 | 47.586 | 145 | 75 | 1 | 2 | 145 | 5 | 149 | 2.81e-39 | 130 |
| MS.gene86494.t1 | MTR_1g078090 | 40.690 | 145 | 68 | 4 | 15 | 145 | 45 | 185 | 1.52e-29 | 106 |
| MS.gene86494.t1 | MTR_6g026890 | 36.806 | 144 | 77 | 5 | 15 | 145 | 6 | 148 | 5.62e-25 | 93.6 |
| MS.gene86494.t1 | MTR_2g091235 | 32.653 | 147 | 71 | 3 | 22 | 145 | 1 | 142 | 7.15e-22 | 85.5 |
| MS.gene86494.t1 | MTR_3g010130 | 69.231 | 52 | 15 | 1 | 1 | 51 | 1 | 52 | 3.91e-18 | 73.9 |
| MS.gene86494.t1 | MTR_6g045203 | 34.058 | 138 | 72 | 6 | 25 | 145 | 5 | 140 | 4.89e-17 | 72.8 |
| MS.gene86494.t1 | MTR_1g082650 | 39.189 | 74 | 45 | 0 | 22 | 95 | 9 | 82 | 3.13e-14 | 68.9 |
| MS.gene86494.t1 | MTR_7g013660 | 39.560 | 91 | 53 | 1 | 23 | 113 | 4 | 92 | 1.91e-13 | 63.2 |
| MS.gene86494.t1 | MTR_4g117140 | 39.394 | 66 | 40 | 0 | 22 | 87 | 9 | 74 | 1.26e-12 | 64.3 |
| MS.gene86494.t1 | MTR_2g022250 | 39.394 | 66 | 40 | 0 | 22 | 87 | 9 | 74 | 1.42e-12 | 63.9 |
| MS.gene86494.t1 | MTR_4g117220 | 39.394 | 66 | 40 | 0 | 22 | 87 | 9 | 74 | 1.78e-12 | 63.9 |
| MS.gene86494.t1 | MTR_1g107565 | 39.394 | 66 | 40 | 0 | 22 | 87 | 12 | 77 | 2.37e-12 | 63.2 |
| MS.gene86494.t1 | MTR_7g108560 | 40.000 | 65 | 39 | 0 | 23 | 87 | 22 | 86 | 2.50e-12 | 63.2 |
| MS.gene86494.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 23 | 87 | 4 | 68 | 4.98e-12 | 58.2 |
| MS.gene86494.t1 | MTR_4g094238 | 35.294 | 85 | 52 | 2 | 22 | 106 | 1 | 82 | 1.32e-11 | 57.4 |
| MS.gene86494.t1 | MTR_1g083310 | 35.526 | 76 | 48 | 1 | 14 | 88 | 6 | 81 | 7.44e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86494.t1 | AT1G22990 | 55.263 | 152 | 61 | 2 | 1 | 145 | 1 | 152 | 1.25e-57 | 176 |
| MS.gene86494.t1 | AT1G22990 | 52.632 | 152 | 60 | 3 | 1 | 145 | 1 | 147 | 9.67e-53 | 164 |
| MS.gene86494.t1 | AT1G71050 | 53.947 | 152 | 63 | 3 | 1 | 145 | 1 | 152 | 2.46e-52 | 163 |
| MS.gene86494.t1 | AT5G17450 | 54.362 | 149 | 64 | 2 | 1 | 145 | 1 | 149 | 4.45e-50 | 157 |
| MS.gene86494.t1 | AT4G39700 | 50.318 | 157 | 62 | 4 | 2 | 145 | 5 | 158 | 1.47e-42 | 138 |
| MS.gene86494.t1 | AT4G38580 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 1.97e-41 | 135 |
| MS.gene86494.t1 | AT4G38580 | 47.059 | 153 | 73 | 3 | 1 | 145 | 1 | 153 | 1.97e-41 | 135 |
| MS.gene86494.t1 | AT5G66110 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 8.47e-41 | 134 |
| MS.gene86494.t1 | AT5G66110 | 54.412 | 136 | 54 | 3 | 17 | 145 | 13 | 147 | 8.47e-41 | 134 |
| MS.gene86494.t1 | AT4G35060 | 41.830 | 153 | 81 | 3 | 1 | 145 | 1 | 153 | 1.38e-40 | 133 |
| MS.gene86494.t1 | AT4G08570 | 45.205 | 146 | 78 | 2 | 2 | 145 | 5 | 150 | 9.86e-39 | 128 |
| MS.gene86494.t1 | AT5G66110 | 52.459 | 122 | 50 | 3 | 31 | 145 | 1 | 121 | 2.78e-35 | 119 |
| MS.gene86494.t1 | AT5G17450 | 50.505 | 99 | 48 | 1 | 48 | 145 | 7 | 105 | 2.68e-32 | 110 |
| MS.gene86494.t1 | AT2G18196 | 37.419 | 155 | 82 | 4 | 3 | 145 | 27 | 178 | 4.60e-28 | 102 |
| MS.gene86494.t1 | AT4G10465 | 39.865 | 148 | 74 | 3 | 10 | 145 | 39 | 183 | 2.26e-27 | 100 |
| MS.gene86494.t1 | AT1G06330 | 37.013 | 154 | 63 | 3 | 22 | 145 | 1 | 150 | 5.27e-24 | 91.3 |
| MS.gene86494.t1 | AT2G18196 | 39.370 | 127 | 63 | 3 | 31 | 145 | 1 | 125 | 3.36e-23 | 88.2 |
| MS.gene86494.t1 | AT3G56891 | 32.468 | 154 | 72 | 5 | 22 | 145 | 15 | 166 | 1.69e-21 | 85.1 |
| MS.gene86494.t1 | AT3G56891 | 32.414 | 145 | 66 | 5 | 31 | 145 | 1 | 143 | 1.77e-19 | 79.3 |
| MS.gene86494.t1 | AT1G29100 | 30.405 | 148 | 71 | 4 | 25 | 145 | 5 | 147 | 1.29e-15 | 69.3 |
| MS.gene86494.t1 | AT3G48970 | 38.686 | 137 | 69 | 6 | 24 | 145 | 2 | 138 | 2.40e-14 | 65.9 |
| MS.gene86494.t1 | AT3G48970 | 38.686 | 137 | 69 | 6 | 24 | 145 | 2 | 138 | 2.40e-14 | 65.9 |
| MS.gene86494.t1 | AT3G48970 | 39.130 | 138 | 67 | 7 | 24 | 145 | 4 | 140 | 2.43e-14 | 65.9 |
| MS.gene86494.t1 | AT1G29100 | 29.452 | 146 | 71 | 4 | 27 | 145 | 1 | 141 | 2.92e-14 | 65.9 |
| MS.gene86494.t1 | AT1G66240 | 44.615 | 65 | 36 | 0 | 23 | 87 | 33 | 97 | 7.20e-13 | 61.2 |
| MS.gene86494.t1 | AT3G56240 | 42.424 | 66 | 38 | 0 | 23 | 88 | 3 | 68 | 5.76e-12 | 59.3 |
| MS.gene86494.t1 | AT3G56240 | 42.424 | 66 | 38 | 0 | 23 | 88 | 3 | 68 | 5.76e-12 | 59.3 |
| MS.gene86494.t1 | AT3G06130 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 1.01e-11 | 61.6 |
| MS.gene86494.t1 | AT3G06130 | 36.111 | 72 | 46 | 0 | 22 | 93 | 9 | 80 | 1.48e-11 | 61.2 |
| MS.gene86494.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.74e-11 | 60.5 |
| MS.gene86494.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.74e-11 | 60.5 |
| MS.gene86494.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.74e-11 | 60.5 |
| MS.gene86494.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.92e-11 | 60.5 |
| MS.gene86494.t1 | AT5G19090 | 37.879 | 66 | 41 | 0 | 22 | 87 | 9 | 74 | 2.92e-11 | 60.5 |
| MS.gene86494.t1 | AT5G27690 | 32.258 | 62 | 42 | 0 | 27 | 88 | 34 | 95 | 8.06e-11 | 58.9 |
Find 31 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTATCATCTGTTCCATT+TGG | 0.247141 | 5.1:+15618111 | None:intergenic |
| AGTGGAAATAAAGGTGAAAA+TGG | 0.297522 | 5.1:-15619123 | MS.gene86494:CDS |
| CTGTGCTCTGCACCTTCCTT+AGG | 0.323100 | 5.1:+15618259 | None:intergenic |
| TCTTATCATCTGTTCCATTT+GGG | 0.328722 | 5.1:+15618112 | None:intergenic |
| CACATGATTGAACATGCATT+AGG | 0.335274 | 5.1:+15618063 | None:intergenic |
| CTTATAGACAGTGGAAATAA+AGG | 0.347942 | 5.1:-15619132 | MS.gene86494:intron |
| TCATCTGTTCCATTTGGGTT+TGG | 0.349576 | 5.1:+15618117 | None:intergenic |
| ACATGATTGAACATGCATTA+GGG | 0.359404 | 5.1:+15618064 | None:intergenic |
| CAAAGCAAGGTAACCGTGAC+TGG | 0.363196 | 5.1:-15618303 | MS.gene86494:CDS |
| TGGGAATGTCGATAGAAATA+AGG | 0.392805 | 5.1:-15618283 | MS.gene86494:CDS |
| ACCAAGTTAGCTTCAACATA+TGG | 0.451325 | 5.1:+15618216 | None:intergenic |
| GCCATATGTTGAAGCTAACT+TGG | 0.464839 | 5.1:-15618217 | MS.gene86494:CDS |
| AGCTTGTGAAATACCTGCAT+TGG | 0.470539 | 5.1:+15619225 | None:intergenic |
| TGCATATGCCTGTGTTATGT+AGG | 0.478193 | 5.1:+15618185 | None:intergenic |
| AATTCTGTTACTAACATGTC+AGG | 0.503481 | 5.1:-15619071 | MS.gene86494:intron |
| CTAAGGAAGGTGCAGAGCAC+AGG | 0.508118 | 5.1:-15618258 | MS.gene86494:CDS |
| AGGGTTATCATCACTGAAGA+AGG | 0.527497 | 5.1:+15618083 | None:intergenic |
| TTAGCAATACCAAACCCAAA+TGG | 0.531163 | 5.1:-15618126 | MS.gene86494:CDS |
| GCATATGCCTGTGTTATGTA+GGG | 0.531267 | 5.1:+15618186 | None:intergenic |
| TCGATAGAAATAAGGTCCTA+AGG | 0.542836 | 5.1:-15618275 | MS.gene86494:CDS |
| AAAGAAACACAAACCAATGC+AGG | 0.567644 | 5.1:-15619238 | MS.gene86494:intron |
| ATATGATAATGTAGGTGTGA+AGG | 0.572793 | 5.1:-15618346 | MS.gene86494:intron |
| TAGAAATAAGGTCCTAAGGA+AGG | 0.572839 | 5.1:-15618271 | MS.gene86494:CDS |
| ATATGTTGAAGCTAACTTGG+TGG | 0.579782 | 5.1:-15618214 | MS.gene86494:CDS |
| TCTATCGACATTCCCAGTCA+CGG | 0.589743 | 5.1:+15618290 | None:intergenic |
| ATGGCTGTGAAAGAAGAGTT+CGG | 0.593996 | 5.1:-15619094 | MS.gene86494:CDS |
| AAAGCAAGGTAACCGTGACT+GGG | 0.604590 | 5.1:-15618302 | MS.gene86494:CDS |
| TGACAGTGAAGTAATCTGAA+AGG | 0.632257 | 5.1:+15619268 | None:intergenic |
| TGTGAATAGAGAGCAAAGCA+AGG | 0.638066 | 5.1:-15618316 | MS.gene86494:CDS |
| GGCATATCCCTACATAACAC+AGG | 0.656872 | 5.1:-15618193 | MS.gene86494:CDS |
| AAGGTGAAAATGGACTGTGA+TGG | 0.710877 | 5.1:-15619113 | MS.gene86494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACAACAATATGATAATGT+AGG | - | chr5.1:15618993-15619012 | MS.gene86494:intron | 20.0% |
| ! | AATGTTCATATTCTCAATGA+AGG | - | chr5.1:15618383-15618402 | MS.gene86494:intron | 25.0% |
| ! | ATAAATGAGATAGGATACAT+AGG | + | chr5.1:15618148-15618167 | None:intergenic | 25.0% |
| ! | TACATGTACATAAATGAGAT+AGG | + | chr5.1:15618157-15618176 | None:intergenic | 25.0% |
| ! | TCTTCTTATCTCAAATCAAA+TGG | - | chr5.1:15618331-15618350 | MS.gene86494:CDS | 25.0% |
| ! | TTGATATTTCAAACGATTCT+CGG | - | chr5.1:15618683-15618702 | MS.gene86494:intron | 25.0% |
| !! | AATCAAATGGCATGATTTTT+AGG | - | chr5.1:15618344-15618363 | MS.gene86494:intron | 25.0% |
| !! | AATTTCTAAGGGCAAATTAT+AGG | + | chr5.1:15618750-15618769 | None:intergenic | 25.0% |
| !! | ATTTCTAAGGGCAAATTATA+GGG | + | chr5.1:15618749-15618768 | None:intergenic | 25.0% |
| !! | TGTTTTCTTTATAGCCAAAT+TGG | - | chr5.1:15618928-15618947 | MS.gene86494:intron | 25.0% |
| !! | TTTTGTTAGAACAACCAATT+TGG | + | chr5.1:15618945-15618964 | None:intergenic | 25.0% |
| !!! | ATTGGTTTGTGTTTCTTTTT+TGG | + | chr5.1:15618107-15618126 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTGTTTCTTTTTT+GGG | + | chr5.1:15618106-15618125 | None:intergenic | 25.0% |
| !!! | TTTCAAGTGGTTTTTAAGTA+CGG | + | chr5.1:15618435-15618454 | None:intergenic | 25.0% |
| AATTCTGTTACTAACATGTC+AGG | - | chr5.1:15618276-15618295 | MS.gene86494:CDS | 30.0% | |
| ACATGATTGAACATGCATTA+GGG | + | chr5.1:15619286-15619305 | None:intergenic | 30.0% | |
| AGTGGAAATAAAGGTGAAAA+TGG | - | chr5.1:15618224-15618243 | MS.gene86494:CDS | 30.0% | |
| ATAGAGTTTCAACTTTCAAG+TGG | + | chr5.1:15618448-15618467 | None:intergenic | 30.0% | |
| ATCTTATCATCTGTTCCATT+TGG | + | chr5.1:15619239-15619258 | None:intergenic | 30.0% | |
| CTATTTGTAAGTAGAAACTC+CGG | + | chr5.1:15618649-15618668 | None:intergenic | 30.0% | |
| CTTATAGACAGTGGAAATAA+AGG | - | chr5.1:15618215-15618234 | MS.gene86494:CDS | 30.0% | |
| GTGTTAGTTCAACAAAAACA+AGG | - | chr5.1:15618522-15618541 | MS.gene86494:intron | 30.0% | |
| TCTTATCATCTGTTCCATTT+GGG | + | chr5.1:15619238-15619257 | None:intergenic | 30.0% | |
| TGATATTTCAAACGATTCTC+GGG | - | chr5.1:15618684-15618703 | MS.gene86494:intron | 30.0% | |
| TTCATATTCTCAATGAAGGT+GGG | - | chr5.1:15618387-15618406 | MS.gene86494:intron | 30.0% | |
| ! | ATATGATAATGTAGGTGTGA+AGG | - | chr5.1:15619001-15619020 | MS.gene86494:intron | 30.0% |
| ! | GGTGGGTTCTATAATTTATA+CGG | - | chr5.1:15618404-15618423 | MS.gene86494:intron | 30.0% |
| ! | TTAACCAGATTTTTATGGCT+GGG | + | chr5.1:15618626-15618645 | None:intergenic | 30.0% |
| !! | CGAATATGAGTTGAGTTTTA+AGG | - | chr5.1:15618551-15618570 | MS.gene86494:intron | 30.0% |
| !!! | CTTTTTTCTCTTATAGACAG+TGG | - | chr5.1:15618206-15618225 | MS.gene86494:CDS | 30.0% |
| !!! | TGGTTTGTGTTTCTTTTTTG+GGG | + | chr5.1:15618105-15618124 | None:intergenic | 30.0% |
| AAAGAAACACAAACCAATGC+AGG | - | chr5.1:15618109-15618128 | MS.gene86494:CDS | 35.0% | |
| ATATGTTGAAGCTAACTTGG+TGG | - | chr5.1:15619133-15619152 | MS.gene86494:intron | 35.0% | |
| CACATGATTGAACATGCATT+AGG | + | chr5.1:15619287-15619306 | None:intergenic | 35.0% | |
| CTCCTATCTTCATTGATAAG+TGG | - | chr5.1:15618782-15618801 | MS.gene86494:intron | 35.0% | |
| GCCATAAAAATCTGGTTAAC+CGG | - | chr5.1:15618627-15618646 | MS.gene86494:intron | 35.0% | |
| GTCCACTTATCAATGAAGAT+AGG | + | chr5.1:15618787-15618806 | None:intergenic | 35.0% | |
| GTTCATATTCTCAATGAAGG+TGG | - | chr5.1:15618386-15618405 | MS.gene86494:intron | 35.0% | |
| TAGAAATAAGGTCCTAAGGA+AGG | - | chr5.1:15619076-15619095 | MS.gene86494:CDS | 35.0% | |
| TATGCAAAAAATGCACCTTC+TGG | - | chr5.1:15619179-15619198 | MS.gene86494:intron | 35.0% | |
| TCGATAGAAATAAGGTCCTA+AGG | - | chr5.1:15619072-15619091 | MS.gene86494:CDS | 35.0% | |
| TGACAGTGAAGTAATCTGAA+AGG | + | chr5.1:15618082-15618101 | None:intergenic | 35.0% | |
| TGGGAATGTCGATAGAAATA+AGG | - | chr5.1:15619064-15619083 | MS.gene86494:intron | 35.0% | |
| TTAGCAATACCAAACCCAAA+TGG | - | chr5.1:15619221-15619240 | MS.gene86494:intron | 35.0% | |
| ! | ACCAAGTTAGCTTCAACATA+TGG | + | chr5.1:15619134-15619153 | None:intergenic | 35.0% |
| ! | CAGGAAAAAGAGCAAAGTTT+TGG | - | chr5.1:15619108-15619127 | MS.gene86494:CDS | 35.0% |
| ! | GTGTTTTTCACATATCCAGA+AGG | + | chr5.1:15619197-15619216 | None:intergenic | 35.0% |
| ! | GTTAACCAGATTTTTATGGC+TGG | + | chr5.1:15618627-15618646 | None:intergenic | 35.0% |
| ! | TCCGGTTAACCAGATTTTTA+TGG | + | chr5.1:15618631-15618650 | None:intergenic | 35.0% |
| ACGTTGAAGATTGTGAACGT+TGG | + | chr5.1:15618474-15618493 | None:intergenic | 40.0% | |
| AGCTTGTGAAATACCTGCAT+TGG | + | chr5.1:15618125-15618144 | None:intergenic | 40.0% | |
| AGGGTTATCATCACTGAAGA+AGG | + | chr5.1:15619267-15619286 | None:intergenic | 40.0% | |
| ATAGGGTGAACTGCTTTGAT+AGG | + | chr5.1:15618732-15618751 | None:intergenic | 40.0% | |
| ATGGCTGTGAAAGAAGAGTT+CGG | - | chr5.1:15618253-15618272 | MS.gene86494:CDS | 40.0% | |
| CGACTCAAGACCAATTATCA+CGG | - | chr5.1:15618599-15618618 | MS.gene86494:intron | 40.0% | |
| GCATATGCCTGTGTTATGTA+GGG | + | chr5.1:15619164-15619183 | None:intergenic | 40.0% | |
| GCCATATGTTGAAGCTAACT+TGG | - | chr5.1:15619130-15619149 | MS.gene86494:intron | 40.0% | |
| TGCATATGCCTGTGTTATGT+AGG | + | chr5.1:15619165-15619184 | None:intergenic | 40.0% | |
| TGTGAATAGAGAGCAAAGCA+AGG | - | chr5.1:15619031-15619050 | MS.gene86494:intron | 40.0% | |
| ! | TCATCTGTTCCATTTGGGTT+TGG | + | chr5.1:15619233-15619252 | None:intergenic | 40.0% |
| !! | AAGGTGAAAATGGACTGTGA+TGG | - | chr5.1:15618234-15618253 | MS.gene86494:CDS | 40.0% |
| AAAGCAAGGTAACCGTGACT+GGG | - | chr5.1:15619045-15619064 | MS.gene86494:intron | 45.0% | |
| CAAACGATTCTCGGGTATCT+AGG | - | chr5.1:15618692-15618711 | MS.gene86494:intron | 45.0% | |
| GGCATATCCCTACATAACAC+AGG | - | chr5.1:15619154-15619173 | MS.gene86494:intron | 45.0% | |
| TCGGGTATCTAGGTTCATGA+TGG | - | chr5.1:15618702-15618721 | MS.gene86494:intron | 45.0% | |
| TCTATCGACATTCCCAGTCA+CGG | + | chr5.1:15619060-15619079 | None:intergenic | 45.0% | |
| !! | TATATAAAAAAAATTTCTAA+GGG | + | chr5.1:15618761-15618780 | None:intergenic | 5.0% |
| !! | TTATATAAAAAAAATTTCTA+AGG | + | chr5.1:15618762-15618781 | None:intergenic | 5.0% |
| ATGGCTGGGACCGTGATAAT+TGG | + | chr5.1:15618612-15618631 | None:intergenic | 50.0% | |
| CAAAGCAAGGTAACCGTGAC+TGG | - | chr5.1:15619044-15619063 | MS.gene86494:intron | 50.0% | |
| CGGTCCCAGCCATAAAAATC+TGG | - | chr5.1:15618619-15618638 | MS.gene86494:intron | 50.0% | |
| GGGTGAACTGCTTTGATAGG+CGG | + | chr5.1:15618729-15618748 | None:intergenic | 50.0% | |
| CTGTGCTCTGCACCTTCCTT+AGG | + | chr5.1:15619091-15619110 | None:intergenic | 55.0% | |
| ! | CTAAGGAAGGTGCAGAGCAC+AGG | - | chr5.1:15619089-15619108 | MS.gene86494:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15618062 | 15619307 | 15618062 | ID=MS.gene86494 |
| chr5.1 | mRNA | 15618062 | 15619307 | 15618062 | ID=MS.gene86494.t1;Parent=MS.gene86494 |
| chr5.1 | exon | 15619239 | 15619307 | 15619239 | ID=MS.gene86494.t1.exon1;Parent=MS.gene86494.t1 |
| chr5.1 | CDS | 15619239 | 15619307 | 15619239 | ID=cds.MS.gene86494.t1;Parent=MS.gene86494.t1 |
| chr5.1 | exon | 15619072 | 15619147 | 15619072 | ID=MS.gene86494.t1.exon2;Parent=MS.gene86494.t1 |
| chr5.1 | CDS | 15619072 | 15619147 | 15619072 | ID=cds.MS.gene86494.t1;Parent=MS.gene86494.t1 |
| chr5.1 | exon | 15618062 | 15618354 | 15618062 | ID=MS.gene86494.t1.exon3;Parent=MS.gene86494.t1 |
| chr5.1 | CDS | 15618062 | 15618354 | 15618062 | ID=cds.MS.gene86494.t1;Parent=MS.gene86494.t1 |
| Gene Sequence |
| Protein sequence |
