Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59150.t1 | XP_013466500.1 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 1.20E-75 | 292.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59150.t1 | Q93VP2 | 58.6 | 152 | 58 | 2 | 1 | 147 | 1 | 152 | 4.2e-45 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59150.t1 | A0A072VG10 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 8.7e-76 | 292.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83137 | MS.gene59150 | PPI |
| MS.gene59150 | MS.gene59148 | PPI |
| MS.gene82764 | MS.gene59150 | PPI |
| MS.gene62995 | MS.gene59150 | PPI |
| MS.gene88333 | MS.gene59150 | PPI |
| MS.gene59150 | MS.gene82488 | PPI |
| MS.gene032699 | MS.gene59150 | PPI |
| MS.gene83138 | MS.gene59150 | PPI |
| MS.gene026612 | MS.gene59150 | PPI |
| MS.gene053111 | MS.gene59150 | PPI |
| MS.gene72709 | MS.gene59150 | PPI |
| MS.gene62994 | MS.gene59150 | PPI |
| MS.gene59150 | MS.gene83139 | PPI |
| MS.gene86494 | MS.gene59150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59150.t1 | MTR_1g030630 | 96.599 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 4.30e-106 | 299 |
| MS.gene59150.t1 | MTR_5g025150 | 73.469 | 147 | 37 | 1 | 1 | 147 | 1 | 145 | 9.93e-79 | 229 |
| MS.gene59150.t1 | MTR_7g083060 | 62.838 | 148 | 52 | 3 | 1 | 147 | 1 | 146 | 2.08e-59 | 181 |
| MS.gene59150.t1 | MTR_6g003990 | 58.065 | 155 | 57 | 3 | 1 | 147 | 1 | 155 | 1.04e-58 | 179 |
| MS.gene59150.t1 | MTR_3g087770 | 60.800 | 125 | 47 | 2 | 24 | 147 | 29 | 152 | 4.26e-53 | 165 |
| MS.gene59150.t1 | MTR_3g117890 | 51.923 | 156 | 66 | 3 | 1 | 147 | 1 | 156 | 1.07e-52 | 164 |
| MS.gene59150.t1 | MTR_4g073040 | 51.282 | 156 | 67 | 3 | 1 | 147 | 1 | 156 | 1.95e-51 | 161 |
| MS.gene59150.t1 | MTR_8g091420 | 58.871 | 124 | 49 | 1 | 26 | 147 | 30 | 153 | 1.75e-49 | 156 |
| MS.gene59150.t1 | MTR_5g022620 | 53.459 | 159 | 60 | 5 | 1 | 147 | 1 | 157 | 4.53e-49 | 155 |
| MS.gene59150.t1 | MTR_6g003990 | 61.864 | 118 | 42 | 2 | 33 | 147 | 1 | 118 | 8.21e-49 | 153 |
| MS.gene59150.t1 | MTR_5g055020 | 46.259 | 147 | 79 | 0 | 1 | 147 | 1 | 147 | 8.24e-49 | 154 |
| MS.gene59150.t1 | MTR_3g073670 | 51.020 | 147 | 69 | 2 | 2 | 147 | 5 | 149 | 1.04e-42 | 139 |
| MS.gene59150.t1 | MTR_1g078090 | 38.060 | 134 | 73 | 2 | 24 | 147 | 52 | 185 | 2.08e-28 | 103 |
| MS.gene59150.t1 | MTR_6g026890 | 34.286 | 140 | 70 | 4 | 24 | 147 | 15 | 148 | 1.28e-25 | 95.1 |
| MS.gene59150.t1 | MTR_2g091235 | 36.054 | 147 | 66 | 4 | 24 | 147 | 1 | 142 | 2.05e-23 | 89.4 |
| MS.gene59150.t1 | MTR_6g045203 | 37.500 | 136 | 70 | 5 | 27 | 147 | 5 | 140 | 9.72e-19 | 77.4 |
| MS.gene59150.t1 | MTR_3g010130 | 69.811 | 53 | 15 | 1 | 1 | 53 | 1 | 52 | 1.23e-17 | 72.8 |
| MS.gene59150.t1 | MTR_1g107565 | 45.455 | 66 | 36 | 0 | 24 | 89 | 12 | 77 | 4.09e-14 | 68.6 |
| MS.gene59150.t1 | MTR_2g022250 | 45.455 | 66 | 36 | 0 | 24 | 89 | 9 | 74 | 1.08e-13 | 67.4 |
| MS.gene59150.t1 | MTR_4g117140 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 2.99e-13 | 66.2 |
| MS.gene59150.t1 | MTR_7g108560 | 41.538 | 65 | 38 | 0 | 25 | 89 | 22 | 86 | 3.06e-13 | 65.5 |
| MS.gene59150.t1 | MTR_4g117220 | 43.939 | 66 | 37 | 0 | 24 | 89 | 9 | 74 | 4.50e-13 | 65.5 |
| MS.gene59150.t1 | MTR_7g013660 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 4.83e-13 | 62.4 |
| MS.gene59150.t1 | MTR_1g082650 | 40.909 | 66 | 39 | 0 | 24 | 89 | 9 | 74 | 1.00e-12 | 64.7 |
| MS.gene59150.t1 | MTR_1g092670 | 41.538 | 65 | 38 | 0 | 25 | 89 | 4 | 68 | 1.11e-12 | 60.1 |
| MS.gene59150.t1 | MTR_4g094238 | 35.294 | 85 | 52 | 2 | 24 | 108 | 1 | 82 | 1.41e-12 | 60.1 |
| MS.gene59150.t1 | MTR_7g113110 | 43.548 | 62 | 35 | 0 | 29 | 90 | 37 | 98 | 2.91e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59150.t1 | AT1G22990 | 58.553 | 152 | 58 | 2 | 1 | 147 | 1 | 152 | 5.78e-61 | 185 |
| MS.gene59150.t1 | AT1G71050 | 59.868 | 152 | 56 | 2 | 1 | 147 | 1 | 152 | 2.48e-58 | 178 |
| MS.gene59150.t1 | AT1G22990 | 54.730 | 148 | 65 | 2 | 1 | 147 | 1 | 147 | 4.93e-56 | 172 |
| MS.gene59150.t1 | AT5G17450 | 56.376 | 149 | 63 | 2 | 1 | 147 | 1 | 149 | 3.20e-53 | 165 |
| MS.gene59150.t1 | AT4G38580 | 50.327 | 153 | 70 | 3 | 1 | 147 | 1 | 153 | 2.52e-48 | 153 |
| MS.gene59150.t1 | AT4G38580 | 50.327 | 153 | 70 | 3 | 1 | 147 | 1 | 153 | 2.52e-48 | 153 |
| MS.gene59150.t1 | AT4G39700 | 60.150 | 133 | 49 | 1 | 19 | 147 | 26 | 158 | 1.74e-47 | 151 |
| MS.gene59150.t1 | AT4G35060 | 43.791 | 153 | 80 | 2 | 1 | 147 | 1 | 153 | 9.06e-47 | 149 |
| MS.gene59150.t1 | AT5G66110 | 53.333 | 135 | 57 | 2 | 19 | 147 | 13 | 147 | 8.15e-46 | 146 |
| MS.gene59150.t1 | AT5G66110 | 53.333 | 135 | 57 | 2 | 19 | 147 | 13 | 147 | 8.15e-46 | 146 |
| MS.gene59150.t1 | AT5G66110 | 51.240 | 121 | 53 | 2 | 33 | 147 | 1 | 121 | 8.86e-41 | 133 |
| MS.gene59150.t1 | AT4G08570 | 50.794 | 126 | 60 | 2 | 24 | 147 | 25 | 150 | 9.97e-41 | 134 |
| MS.gene59150.t1 | AT5G17450 | 56.122 | 98 | 42 | 1 | 51 | 147 | 8 | 105 | 8.56e-37 | 122 |
| MS.gene59150.t1 | AT2G18196 | 36.567 | 134 | 75 | 2 | 24 | 147 | 45 | 178 | 7.15e-27 | 99.4 |
| MS.gene59150.t1 | AT1G06330 | 37.013 | 154 | 63 | 4 | 24 | 147 | 1 | 150 | 7.61e-27 | 98.6 |
| MS.gene59150.t1 | AT4G10465 | 36.691 | 139 | 78 | 2 | 19 | 147 | 45 | 183 | 1.29e-25 | 96.3 |
| MS.gene59150.t1 | AT3G56891 | 36.774 | 155 | 64 | 6 | 24 | 147 | 15 | 166 | 1.02e-24 | 93.6 |
| MS.gene59150.t1 | AT3G56891 | 36.986 | 146 | 58 | 6 | 33 | 147 | 1 | 143 | 1.12e-22 | 87.8 |
| MS.gene59150.t1 | AT2G18196 | 36.000 | 125 | 70 | 2 | 33 | 147 | 1 | 125 | 1.14e-22 | 87.0 |
| MS.gene59150.t1 | AT1G29100 | 33.557 | 149 | 67 | 5 | 26 | 147 | 4 | 147 | 1.41e-17 | 74.7 |
| MS.gene59150.t1 | AT1G29100 | 32.877 | 146 | 66 | 5 | 29 | 147 | 1 | 141 | 3.29e-16 | 70.9 |
| MS.gene59150.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 4 | 140 | 1.36e-14 | 66.6 |
| MS.gene59150.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 1.43e-14 | 66.6 |
| MS.gene59150.t1 | AT3G48970 | 39.416 | 137 | 68 | 6 | 26 | 147 | 2 | 138 | 1.43e-14 | 66.6 |
| MS.gene59150.t1 | AT1G66240 | 43.077 | 65 | 37 | 0 | 25 | 89 | 33 | 97 | 2.04e-13 | 62.8 |
| MS.gene59150.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 7.07e-13 | 65.1 |
| MS.gene59150.t1 | AT3G06130 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.26e-12 | 64.3 |
| MS.gene59150.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.87e-12 | 63.9 |
| MS.gene59150.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.87e-12 | 63.9 |
| MS.gene59150.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.92e-12 | 63.9 |
| MS.gene59150.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.92e-12 | 63.9 |
| MS.gene59150.t1 | AT5G19090 | 42.424 | 66 | 38 | 0 | 24 | 89 | 9 | 74 | 1.92e-12 | 63.9 |
| MS.gene59150.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.62e-12 | 60.1 |
| MS.gene59150.t1 | AT3G56240 | 40.909 | 66 | 39 | 0 | 25 | 90 | 3 | 68 | 2.62e-12 | 60.1 |
| MS.gene59150.t1 | AT5G27690 | 40.323 | 62 | 37 | 0 | 29 | 90 | 34 | 95 | 7.06e-12 | 62.0 |
| MS.gene59150.t1 | AT1G23000 | 37.879 | 66 | 41 | 0 | 24 | 89 | 72 | 137 | 3.27e-11 | 60.1 |
| MS.gene59150.t1 | AT1G23000 | 37.143 | 70 | 44 | 0 | 24 | 93 | 12 | 81 | 4.86e-11 | 59.7 |
Find 27 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCAGTTGATGGGTATTC+AGG | 0.224406 | 1.4:-15443763 | None:intergenic |
| AGTTTCTCATCCATTGCATT+AGG | 0.260018 | 1.4:-15446197 | None:intergenic |
| TCATATGCTTGTGATATATA+AGG | 0.307329 | 1.4:-15446122 | None:intergenic |
| ACCAAGTTGTATGGAATATA+TGG | 0.307606 | 1.4:-15446092 | None:intergenic |
| GGTTGAAATCAAGGTGAAAA+TGG | 0.336258 | 1.4:+15443907 | MS.gene59150:CDS |
| ACATGATGGAACATGCATTA+GGG | 0.371774 | 1.4:-15446244 | None:intergenic |
| TTCCCTGAATACCCATCAAC+TGG | 0.374593 | 1.4:+15443760 | MS.gene59150:CDS |
| TACATGATGGAACATGCATT+AGG | 0.388858 | 1.4:-15446245 | None:intergenic |
| GTTTCTCATCCATTGCATTA+GGG | 0.401204 | 1.4:-15446196 | None:intergenic |
| CTGGTAAAAGAGCAGAGTTT+TGG | 0.416513 | 1.4:+15446069 | MS.gene59150:CDS |
| CAAAGCAAAGTAACTGTTAG+TGG | 0.418002 | 1.4:+15446005 | MS.gene59150:CDS |
| CTTGCAGACGGTTGAAATCA+AGG | 0.426981 | 1.4:+15443898 | MS.gene59150:intron |
| GGATAAGCCACCAAGTTGTA+TGG | 0.438268 | 1.4:-15446101 | None:intergenic |
| TTCCAGTTGATGGGTATTCA+GGG | 0.463226 | 1.4:-15443762 | None:intergenic |
| ATTAATGCATTGTTACATGA+TGG | 0.474887 | 1.4:-15446258 | None:intergenic |
| ATGGATGTGAAAGAAAAGTT+AGG | 0.497945 | 1.4:+15443936 | MS.gene59150:CDS |
| AATTCTGTTGCTCACATGAA+AGG | 0.514806 | 1.4:+15443959 | MS.gene59150:CDS |
| GCCATATATTCCATACAACT+TGG | 0.516330 | 1.4:+15446091 | MS.gene59150:CDS |
| GAACTGATGAAAACCTGCAT+TGG | 0.531746 | 1.4:-15443796 | None:intergenic |
| ATATATTCCATACAACTTGG+TGG | 0.560676 | 1.4:+15446094 | MS.gene59150:CDS |
| GAGTTCTTCACATAACCAGC+TGG | 0.563801 | 1.4:-15446155 | None:intergenic |
| TATGACAAGAAAGCACCAGC+TGG | 0.601918 | 1.4:+15446140 | MS.gene59150:CDS |
| AATATCTAGCCCTAATGCAA+TGG | 0.608147 | 1.4:+15446187 | MS.gene59150:CDS |
| TTAAAGAAAATACAGAACAC+TGG | 0.644870 | 1.4:+15446050 | MS.gene59150:CDS |
| GCATGCAGGTGTGAAGCAAG+TGG | 0.652347 | 1.4:+15445968 | MS.gene59150:intron |
| AAGGTGAAAATGGACTGTGA+TGG | 0.659683 | 1.4:+15443917 | MS.gene59150:CDS |
| TGCAGGTGTGAAGCAAGTGG+AGG | 0.726031 | 1.4:+15445971 | MS.gene59150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAACTAAGTATTAATA+GGG | - | chr1.4:15444491-15444510 | None:intergenic | 10.0% |
| !! | TTTAATAACTAAGTATTAAT+AGG | - | chr1.4:15444492-15444511 | None:intergenic | 10.0% |
| !!! | AAAGTTTTATTGTAAATAAA+TGG | + | chr1.4:15445384-15445403 | MS.gene59150:intron | 10.0% |
| !!! | AGATTCTTTTTTTTTTTTTT+TGG | - | chr1.4:15445930-15445949 | None:intergenic | 10.0% |
| !!! | TTTTAAGAATTTTTAATAAG+TGG | - | chr1.4:15445462-15445481 | None:intergenic | 10.0% |
| !! | ATACATAATGAGATTATATA+AGG | - | chr1.4:15444942-15444961 | None:intergenic | 15.0% |
| !! | TAATTGTTGTACAAAATATA+AGG | + | chr1.4:15445131-15445150 | MS.gene59150:intron | 15.0% |
| !! | TACGAATATAATAATTTCAT+AGG | + | chr1.4:15445072-15445091 | MS.gene59150:intron | 15.0% |
| !!! | AACTACTTTTGAATAATAAA+TGG | - | chr1.4:15445799-15445818 | None:intergenic | 15.0% |
| !!! | TTTTATTGAAAAAATCTCTA+AGG | - | chr1.4:15445419-15445438 | None:intergenic | 15.0% |
| !! | AAAAGAATCTAATCCATATT+TGG | + | chr1.4:15445940-15445959 | MS.gene59150:intron | 20.0% |
| !! | AATAAATGCAACATAATACT+AGG | + | chr1.4:15445239-15445258 | MS.gene59150:intron | 20.0% |
| !! | CTTCAAAGACTAAAAATTTA+AGG | - | chr1.4:15444902-15444921 | None:intergenic | 20.0% |
| !! | GAATAAATACTAAAAGAGTT+TGG | - | chr1.4:15445584-15445603 | None:intergenic | 20.0% |
| !! | TATAATAATTTCATAGGACT+TGG | + | chr1.4:15445078-15445097 | MS.gene59150:intron | 20.0% |
| !! | TTTATTTGTTTGAGTATTCA+AGG | + | chr1.4:15445635-15445654 | MS.gene59150:intron | 20.0% |
| !!! | AACCCTATAATTTTTGTTTT+GGG | - | chr1.4:15445107-15445126 | None:intergenic | 20.0% |
| !!! | TAACCCTATAATTTTTGTTT+TGG | - | chr1.4:15445108-15445127 | None:intergenic | 20.0% |
| !!! | TTTGCGAAGTTATTTTTAAA+AGG | + | chr1.4:15445545-15445564 | MS.gene59150:intron | 20.0% |
| !!! | TTTTCTTTAACACTCTATTT+CGG | - | chr1.4:15446040-15446059 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTCTCTCTTTTAA+TGG | - | chr1.4:15445367-15445386 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr1.4:15445918-15445937 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr1.4:15445919-15445938 | None:intergenic | 20.0% |
| ! | AAGTTAAATAGGTCAGATTT+AGG | + | chr1.4:15444432-15444451 | MS.gene59150:intron | 25.0% |
| ! | AATGGAAACACTATATGAAA+TGG | - | chr1.4:15444982-15445001 | None:intergenic | 25.0% |
| ! | ATAACTAAGTATTAATAGGG+CGG | - | chr1.4:15444488-15444507 | None:intergenic | 25.0% |
| ! | ATACATATAGAATCTAATCC+TGG | + | chr1.4:15445885-15445904 | MS.gene59150:intron | 25.0% |
| ! | ATGGTTGAACATTATGTTAA+CGG | + | chr1.4:15444275-15444294 | MS.gene59150:intron | 25.0% |
| ! | ATGTGATGTTATAAACAAAG+AGG | - | chr1.4:15443852-15443871 | None:intergenic | 25.0% |
| ! | CAAAGACTAAAAATTTAAGG+AGG | - | chr1.4:15444899-15444918 | None:intergenic | 25.0% |
| ! | CAAAGCATGTTAAGTTAAAT+AGG | + | chr1.4:15444421-15444440 | MS.gene59150:intron | 25.0% |
| ! | TACATATAGAATCTAATCCT+GGG | + | chr1.4:15445886-15445905 | MS.gene59150:intron | 25.0% |
| ! | TATAACAACAAAGCCTATTA+CGG | - | chr1.4:15444585-15444604 | None:intergenic | 25.0% |
| ! | TCATATGCTTGTGATATATA+AGG | - | chr1.4:15446125-15446144 | None:intergenic | 25.0% |
| ! | TGCCCAAAACAAAAATTATA+GGG | + | chr1.4:15445102-15445121 | MS.gene59150:intron | 25.0% |
| ! | TTAAAGAAAATACAGAACAC+TGG | + | chr1.4:15446050-15446069 | MS.gene59150:CDS | 25.0% |
| ! | TTGCCCAAAACAAAAATTAT+AGG | + | chr1.4:15445101-15445120 | MS.gene59150:intron | 25.0% |
| !!! | AGTCTTTTAAGTAGTCTTTA+AGG | + | chr1.4:15444653-15444672 | MS.gene59150:intron | 25.0% |
| !!! | GTTGTTATAGGTTTTTAAGT+AGG | + | chr1.4:15444596-15444615 | MS.gene59150:intron | 25.0% |
| !!! | TGGTTTTTTCTTGACATAAA+TGG | + | chr1.4:15444036-15444055 | MS.gene59150:intron | 25.0% |
| !!! | TTTTTAGTCTTTGAAGATTG+AGG | + | chr1.4:15444906-15444925 | MS.gene59150:intron | 25.0% |
| AAAAAAACACAAACCAATGC+AGG | + | chr1.4:15443783-15443802 | MS.gene59150:CDS | 30.0% | |
| AAATACACCTAACATTAGCA+TGG | + | chr1.4:15445049-15445068 | MS.gene59150:intron | 30.0% | |
| ACCAAGTTGTATGGAATATA+TGG | - | chr1.4:15446095-15446114 | None:intergenic | 30.0% | |
| AGCTACGTTGAAAAAAGAAA+TGG | + | chr1.4:15445276-15445295 | MS.gene59150:intron | 30.0% | |
| ATAACAACAAAGCCTATTAC+GGG | - | chr1.4:15444584-15444603 | None:intergenic | 30.0% | |
| ATATATTCCATACAACTTGG+TGG | + | chr1.4:15446094-15446113 | MS.gene59150:CDS | 30.0% | |
| ATGCTAATGTTAGGTGTATT+TGG | - | chr1.4:15445050-15445069 | None:intergenic | 30.0% | |
| ATGGATGTGAAAGAAAAGTT+AGG | + | chr1.4:15443936-15443955 | MS.gene59150:CDS | 30.0% | |
| ATTGCATACTTCAAACTTAG+TGG | + | chr1.4:15444016-15444035 | MS.gene59150:intron | 30.0% | |
| TGATGACCTTAATGTAAAGT+AGG | + | chr1.4:15444712-15444731 | MS.gene59150:intron | 30.0% | |
| TTGTATATTTCTCTTGCAGA+CGG | + | chr1.4:15443886-15443905 | MS.gene59150:intron | 30.0% | |
| TTTGAGTATTCAAGGAGAAA+CGG | + | chr1.4:15445643-15445662 | MS.gene59150:intron | 30.0% | |
| ! | ATAAGGTGTCTCATAAGAAT+AGG | + | chr1.4:15445148-15445167 | MS.gene59150:intron | 30.0% |
| ! | ATCAGTCCAGACTTTTAAAT+AGG | + | chr1.4:15444754-15444773 | MS.gene59150:intron | 30.0% |
| ! | GTTTTCATCACTAAACATGT+TGG | - | chr1.4:15446225-15446244 | None:intergenic | 30.0% |
| !! | GTAATAGGCTTTGTTGTTAT+AGG | + | chr1.4:15444584-15444603 | MS.gene59150:intron | 30.0% |
| !!! | GCGAAGTTATTTTTAAAAGG+CGG | + | chr1.4:15445548-15445567 | MS.gene59150:intron | 30.0% |
| !!! | TGTGTTTTTTTCCAGTTGAT+GGG | - | chr1.4:15443774-15443793 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTTTTCCAGTTGA+TGG | - | chr1.4:15443775-15443794 | None:intergenic | 30.0% |
| AAAATTCGTAGACCAGACTT+AGG | + | chr1.4:15444795-15444814 | MS.gene59150:intron | 35.0% | |
| AATATCTAGCCCTAATGCAA+TGG | + | chr1.4:15446187-15446206 | MS.gene59150:CDS | 35.0% | |
| AATTCTGTTGCTCACATGAA+AGG | + | chr1.4:15443959-15443978 | MS.gene59150:CDS | 35.0% | |
| ACATTGGCATGAATCATGTA+TGG | - | chr1.4:15445338-15445357 | None:intergenic | 35.0% | |
| ACCTGACCTATTTAAAAGTC+TGG | - | chr1.4:15444763-15444782 | None:intergenic | 35.0% | |
| AGTTTCTCATCCATTGCATT+AGG | - | chr1.4:15446200-15446219 | None:intergenic | 35.0% | |
| ATGATTCATGCCAATGTTCT+TGG | + | chr1.4:15445341-15445360 | MS.gene59150:intron | 35.0% | |
| ATTCGTACCATGCTAATGTT+AGG | - | chr1.4:15445059-15445078 | None:intergenic | 35.0% | |
| CAAAGCAAAGTAACTGTTAG+TGG | + | chr1.4:15446005-15446024 | MS.gene59150:CDS | 35.0% | |
| CAACGTAGCTAAGTAAGTAA+AGG | - | chr1.4:15445266-15445285 | None:intergenic | 35.0% | |
| GCCATATATTCCATACAACT+TGG | + | chr1.4:15446091-15446110 | MS.gene59150:CDS | 35.0% | |
| GGTTGAAATCAAGGTGAAAA+TGG | + | chr1.4:15443907-15443926 | MS.gene59150:CDS | 35.0% | |
| GTCTGTTTAGCGTATTTAGT+AGG | + | chr1.4:15444675-15444694 | MS.gene59150:intron | 35.0% | |
| GTTTCTCATCCATTGCATTA+GGG | - | chr1.4:15446199-15446218 | None:intergenic | 35.0% | |
| TTATCTATCAGTCCCGTAAT+AGG | + | chr1.4:15444569-15444588 | MS.gene59150:intron | 35.0% | |
| TTTGTAAAAAGCCTAAGCCT+AGG | - | chr1.4:15444405-15444424 | None:intergenic | 35.0% | |
| ! | AAAGAGGCGTGAACAAAATT+TGG | - | chr1.4:15443836-15443855 | None:intergenic | 35.0% |
| ! | ACATGATGGAACATGCATTA+GGG | - | chr1.4:15446247-15446266 | None:intergenic | 35.0% |
| ! | ACTTTTAAATAGGTCAGGTC+AGG | + | chr1.4:15444764-15444783 | MS.gene59150:intron | 35.0% |
| ! | CTTTTAATGGCCAAGAACAT+TGG | - | chr1.4:15445354-15445373 | None:intergenic | 35.0% |
| ! | TACATGATGGAACATGCATT+AGG | - | chr1.4:15446248-15446267 | None:intergenic | 35.0% |
| ! | TCCAGACTTTTAAATAGGTC+AGG | + | chr1.4:15444759-15444778 | MS.gene59150:intron | 35.0% |
| ! | TTTTTGTGTCCTTGAGTGAT+TGG | - | chr1.4:15445210-15445229 | None:intergenic | 35.0% |
| !!! | GGCTCGAAGTTTTGAAATTT+TGG | - | chr1.4:15444234-15444253 | None:intergenic | 35.0% |
| ACCTTAATGTAAAGTAGGCC+TGG | + | chr1.4:15444717-15444736 | MS.gene59150:intron | 40.0% | |
| AGACTTGAACCCAAGTGATA+CGG | - | chr1.4:15444302-15444321 | None:intergenic | 40.0% | |
| CCATCTATGACAACAGCAAT+TGG | - | chr1.4:15444259-15444278 | None:intergenic | 40.0% | |
| CTATGACAACAGCAATTGGT+GGG | - | chr1.4:15444255-15444274 | None:intergenic | 40.0% | |
| GAACTGATGAAAACCTGCAT+TGG | - | chr1.4:15443799-15443818 | None:intergenic | 40.0% | |
| GACTTAGGTCTTTCAAAGCT+TGG | + | chr1.4:15444810-15444829 | MS.gene59150:intron | 40.0% | |
| GTCTGACTTATGTAGTAGAG+AGG | + | chr1.4:15444379-15444398 | MS.gene59150:intron | 40.0% | |
| TAGAATCTAATCCTGGGCTT+TGG | + | chr1.4:15445892-15445911 | MS.gene59150:intron | 40.0% | |
| TCCAGGCCTACTTTACATTA+AGG | - | chr1.4:15444721-15444740 | None:intergenic | 40.0% | |
| TCTATGACAACAGCAATTGG+TGG | - | chr1.4:15444256-15444275 | None:intergenic | 40.0% | |
| TCTTGAACACCAATCACTCA+AGG | + | chr1.4:15445198-15445217 | MS.gene59150:intron | 40.0% | |
| TGATTTGAAAGCCTACTTCC+AGG | - | chr1.4:15444738-15444757 | None:intergenic | 40.0% | |
| TTGTGAATCCTCAACGAGTT+TGG | + | chr1.4:15444357-15444376 | MS.gene59150:intron | 40.0% | |
| TTTCCATTCTTCTTTGCGAG+AGG | + | chr1.4:15444994-15445013 | MS.gene59150:intron | 40.0% | |
| ! | CCAATTGCTGTTGTCATAGA+TGG | + | chr1.4:15444256-15444275 | MS.gene59150:intron | 40.0% |
| ! | CTGGTAAAAGAGCAGAGTTT+TGG | + | chr1.4:15446069-15446088 | MS.gene59150:CDS | 40.0% |
| !! | AAGGTGAAAATGGACTGTGA+TGG | + | chr1.4:15443917-15443936 | MS.gene59150:CDS | 40.0% |
| !! | AGCTTTGAAAGACCTAAGTC+TGG | - | chr1.4:15444810-15444829 | None:intergenic | 40.0% |
| !! | TTCCAGTTGATGGGTATTCA+GGG | - | chr1.4:15443765-15443784 | None:intergenic | 40.0% |
| !! | TTTCCAGTTGATGGGTATTC+AGG | - | chr1.4:15443766-15443785 | None:intergenic | 40.0% |
| AAGTCAGACCAAACTCGTTG+AGG | - | chr1.4:15444368-15444387 | None:intergenic | 45.0% | |
| CATATTTGGACCATGCATGC+AGG | + | chr1.4:15445954-15445973 | MS.gene59150:intron | 45.0% | |
| CTGCATGCATGGTCCAAATA+TGG | - | chr1.4:15445956-15445975 | None:intergenic | 45.0% | |
| CTTATGTAGTAGAGAGGCCT+AGG | + | chr1.4:15444385-15444404 | MS.gene59150:intron | 45.0% | |
| CTTGCAGACGGTTGAAATCA+AGG | + | chr1.4:15443898-15443917 | MS.gene59150:intron | 45.0% | |
| GACTTGAACCCAAGTGATAC+GGG | - | chr1.4:15444301-15444320 | None:intergenic | 45.0% | |
| GAGTTCTTCACATAACCAGC+TGG | - | chr1.4:15446158-15446177 | None:intergenic | 45.0% | |
| GCTAAGAATGACACATCTCC+AGG | - | chr1.4:15444841-15444860 | None:intergenic | 45.0% | |
| GGATAAGCCACCAAGTTGTA+TGG | - | chr1.4:15446104-15446123 | None:intergenic | 45.0% | |
| TGTAAAGTAGGCCTGGAAGT+AGG | + | chr1.4:15444724-15444743 | MS.gene59150:intron | 45.0% | |
| TTCCCTGAATACCCATCAAC+TGG | + | chr1.4:15443760-15443779 | MS.gene59150:CDS | 45.0% | |
| !! | TATGACAAGAAAGCACCAGC+TGG | + | chr1.4:15446140-15446159 | MS.gene59150:CDS | 45.0% |
| AGGTCTTTCAAAGCTTGGCC+TGG | + | chr1.4:15444815-15444834 | MS.gene59150:intron | 50.0% | |
| CCACCTCTCGCAAAGAAGAA+TGG | - | chr1.4:15445000-15445019 | None:intergenic | 50.0% | |
| CCATTCTTCTTTGCGAGAGG+TGG | + | chr1.4:15444997-15445016 | MS.gene59150:intron | 50.0% | |
| GTTAACGGCCCGTATCACTT+GGG | + | chr1.4:15444290-15444309 | MS.gene59150:intron | 50.0% | |
| TAGTAGAGAGGCCTAGGCTT+AGG | + | chr1.4:15444391-15444410 | MS.gene59150:intron | 50.0% | |
| TGTTAACGGCCCGTATCACT+TGG | + | chr1.4:15444289-15444308 | MS.gene59150:intron | 50.0% | |
| TTGCTTCACACCTGCATGCA+TGG | - | chr1.4:15445967-15445986 | None:intergenic | 50.0% | |
| ACAAAAGAGGGCCAAAGCCC+AGG | - | chr1.4:15445906-15445925 | None:intergenic | 55.0% | |
| GAATGACACATCTCCAGGCC+AGG | - | chr1.4:15444836-15444855 | None:intergenic | 55.0% | |
| GCATGCAGGTGTGAAGCAAG+TGG | + | chr1.4:15445968-15445987 | MS.gene59150:intron | 55.0% | |
| TGCAGGTGTGAAGCAAGTGG+AGG | + | chr1.4:15445971-15445990 | MS.gene59150:intron | 55.0% | |
| TTTCAAAGCTTGGCCTGGCC+TGG | + | chr1.4:15444820-15444839 | MS.gene59150:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 15443730 | 15446268 | 15443730 | ID=MS.gene59150 |
| chr1.4 | mRNA | 15443730 | 15446268 | 15443730 | ID=MS.gene59150.t1;Parent=MS.gene59150 |
| chr1.4 | exon | 15443730 | 15443804 | 15443730 | ID=MS.gene59150.t1.exon1;Parent=MS.gene59150.t1 |
| chr1.4 | CDS | 15443730 | 15443804 | 15443730 | ID=cds.MS.gene59150.t1;Parent=MS.gene59150.t1 |
| chr1.4 | exon | 15443905 | 15443980 | 15443905 | ID=MS.gene59150.t1.exon2;Parent=MS.gene59150.t1 |
| chr1.4 | CDS | 15443905 | 15443980 | 15443905 | ID=cds.MS.gene59150.t1;Parent=MS.gene59150.t1 |
| chr1.4 | exon | 15445976 | 15446268 | 15445976 | ID=MS.gene59150.t1.exon3;Parent=MS.gene59150.t1 |
| chr1.4 | CDS | 15445976 | 15446268 | 15445976 | ID=cds.MS.gene59150.t1;Parent=MS.gene59150.t1 |
| Gene Sequence |
| Protein sequence |
