Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026652.t1 | XP_013466476.1 | 95.6 | 481 | 21 | 0 | 1 | 481 | 1 | 481 | 2.90E-259 | 904 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026652.t1 | Q70DU8 | 72.3 | 470 | 130 | 0 | 8 | 477 | 4 | 473 | 8.1e-202 | 704.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026652.t1 | A0A072VGG1 | 95.6 | 481 | 21 | 0 | 1 | 481 | 1 | 481 | 2.1e-259 | 904.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene026652 | MS.gene057392 | PPI |
MS.gene62087 | MS.gene026652 | PPI |
MS.gene026652 | MS.gene030576 | PPI |
MS.gene026652 | MS.gene76463 | PPI |
MS.gene026652 | MS.gene49712 | PPI |
MS.gene026652 | MS.gene70176 | PPI |
MS.gene026652 | MS.gene035576 | PPI |
MS.gene025244 | MS.gene026652 | PPI |
MS.gene026652 | MS.gene89630 | PPI |
MS.gene026652 | MS.gene64463 | PPI |
MS.gene026652 | MS.gene016051 | PPI |
MS.gene026652 | MS.gene037163 | PPI |
MS.gene026652 | MS.gene33139 | PPI |
MS.gene012075 | MS.gene026652 | PPI |
MS.gene026652 | MS.gene042286 | PPI |
MS.gene026652 | MS.gene012582 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026652.t1 | MTR_1g029840 | 95.634 | 481 | 21 | 0 | 1 | 481 | 1 | 481 | 0.0 | 947 |
MS.gene026652.t1 | MTR_1g029840 | 88.150 | 481 | 57 | 0 | 1 | 481 | 1 | 481 | 0.0 | 871 |
MS.gene026652.t1 | MTR_3g088150 | 77.426 | 474 | 107 | 0 | 8 | 481 | 10 | 483 | 0.0 | 788 |
MS.gene026652.t1 | MTR_8g094600 | 66.878 | 474 | 157 | 0 | 8 | 481 | 61 | 534 | 0.0 | 688 |
MS.gene026652.t1 | MTR_8g076480 | 51.096 | 456 | 223 | 0 | 15 | 470 | 8 | 463 | 1.26e-173 | 497 |
MS.gene026652.t1 | MTR_2g097950 | 48.380 | 463 | 236 | 1 | 11 | 470 | 15 | 477 | 1.11e-158 | 459 |
MS.gene026652.t1 | MTR_4g065040 | 52.643 | 454 | 212 | 1 | 20 | 470 | 9 | 462 | 1.16e-150 | 439 |
MS.gene026652.t1 | MTR_2g097950 | 45.870 | 460 | 217 | 2 | 11 | 470 | 15 | 442 | 2.22e-141 | 414 |
MS.gene026652.t1 | MTR_1222s0010 | 36.436 | 376 | 227 | 5 | 24 | 395 | 13 | 380 | 1.55e-77 | 257 |
MS.gene026652.t1 | MTR_1314s0010 | 36.982 | 338 | 203 | 4 | 116 | 445 | 1 | 336 | 1.57e-74 | 238 |
MS.gene026652.t1 | MTR_2g034160 | 24.894 | 470 | 321 | 10 | 14 | 466 | 86 | 540 | 8.85e-40 | 152 |
MS.gene026652.t1 | MTR_4g106510 | 29.640 | 361 | 239 | 8 | 95 | 445 | 130 | 485 | 6.09e-36 | 139 |
MS.gene026652.t1 | MTR_3g078550 | 29.917 | 361 | 238 | 7 | 95 | 445 | 100 | 455 | 1.58e-35 | 138 |
MS.gene026652.t1 | MTR_3g078550 | 29.917 | 361 | 238 | 7 | 95 | 445 | 130 | 485 | 2.04e-35 | 138 |
MS.gene026652.t1 | MTR_4g107040 | 28.261 | 460 | 282 | 15 | 12 | 446 | 99 | 535 | 1.16e-34 | 136 |
MS.gene026652.t1 | MTR_3g078490 | 29.178 | 353 | 233 | 8 | 103 | 445 | 170 | 515 | 2.55e-33 | 132 |
MS.gene026652.t1 | MTR_2g067660 | 26.087 | 414 | 287 | 10 | 42 | 446 | 112 | 515 | 3.00e-33 | 132 |
MS.gene026652.t1 | MTR_8g064170 | 28.604 | 444 | 297 | 12 | 14 | 446 | 98 | 532 | 4.90e-33 | 132 |
MS.gene026652.t1 | MTR_3g078170 | 28.285 | 449 | 296 | 12 | 12 | 446 | 97 | 533 | 2.29e-31 | 127 |
MS.gene026652.t1 | MTR_8g083530 | 27.051 | 451 | 295 | 16 | 14 | 446 | 60 | 494 | 1.46e-29 | 121 |
MS.gene026652.t1 | MTR_6g086300 | 26.872 | 454 | 292 | 15 | 14 | 446 | 59 | 493 | 2.48e-26 | 112 |
MS.gene026652.t1 | MTR_6g086300 | 26.872 | 454 | 292 | 15 | 14 | 446 | 59 | 493 | 2.48e-26 | 112 |
MS.gene026652.t1 | MTR_6g086340 | 27.551 | 392 | 250 | 15 | 77 | 445 | 110 | 490 | 2.26e-24 | 106 |
MS.gene026652.t1 | MTR_8g064170 | 26.757 | 441 | 277 | 14 | 14 | 446 | 98 | 500 | 1.21e-23 | 104 |
MS.gene026652.t1 | MTR_4g131180 | 24.885 | 434 | 291 | 11 | 17 | 429 | 49 | 468 | 2.00e-23 | 103 |
MS.gene026652.t1 | MTR_3g078170 | 27.548 | 363 | 239 | 11 | 12 | 360 | 97 | 449 | 3.62e-21 | 96.3 |
MS.gene026652.t1 | MTR_2g009750 | 27.988 | 343 | 218 | 12 | 78 | 406 | 118 | 445 | 1.06e-20 | 95.1 |
MS.gene026652.t1 | MTR_2g009750 | 27.988 | 343 | 218 | 12 | 78 | 406 | 119 | 446 | 1.10e-20 | 95.1 |
MS.gene026652.t1 | MTR_4g020720 | 42.308 | 130 | 66 | 4 | 183 | 306 | 116 | 242 | 1.27e-20 | 92.0 |
MS.gene026652.t1 | MTR_4g131180 | 24.528 | 424 | 285 | 11 | 17 | 419 | 49 | 458 | 3.20e-20 | 93.6 |
MS.gene026652.t1 | MTR_2g009750 | 27.697 | 343 | 220 | 12 | 78 | 406 | 119 | 447 | 4.31e-20 | 93.6 |
MS.gene026652.t1 | MTR_1g014320 | 24.242 | 429 | 300 | 10 | 17 | 429 | 49 | 468 | 5.01e-20 | 93.2 |
MS.gene026652.t1 | MTR_8g083520 | 24.183 | 459 | 265 | 17 | 14 | 446 | 51 | 452 | 6.23e-19 | 89.7 |
MS.gene026652.t1 | MTR_8g083520 | 24.873 | 394 | 231 | 14 | 75 | 446 | 22 | 372 | 8.94e-19 | 88.2 |
MS.gene026652.t1 | MTR_4g093170 | 26.623 | 308 | 205 | 8 | 113 | 406 | 174 | 474 | 2.58e-18 | 88.2 |
MS.gene026652.t1 | MTR_2g042330 | 23.615 | 343 | 244 | 8 | 113 | 442 | 152 | 489 | 9.42e-17 | 83.2 |
MS.gene026652.t1 | MTR_3g078170 | 26.744 | 344 | 228 | 11 | 12 | 341 | 97 | 430 | 1.14e-16 | 82.4 |
MS.gene026652.t1 | MTR_3g078170 | 26.744 | 344 | 228 | 11 | 12 | 341 | 97 | 430 | 1.15e-16 | 82.4 |
MS.gene026652.t1 | MTR_3g078490 | 33.889 | 180 | 109 | 5 | 103 | 277 | 140 | 314 | 2.45e-16 | 80.9 |
MS.gene026652.t1 | MTR_4g020710 | 52.941 | 68 | 32 | 0 | 301 | 368 | 16 | 83 | 4.31e-16 | 75.5 |
MS.gene026652.t1 | MTR_8g083530 | 28.627 | 255 | 165 | 9 | 14 | 259 | 60 | 306 | 3.02e-14 | 74.7 |
MS.gene026652.t1 | MTR_1399s0020 | 29.688 | 192 | 128 | 5 | 252 | 440 | 145 | 332 | 5.68e-13 | 70.5 |
MS.gene026652.t1 | MTR_1690s0010 | 28.155 | 206 | 133 | 8 | 116 | 312 | 146 | 345 | 5.85e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026652.t1 | AT1G44170 | 72.961 | 466 | 126 | 0 | 8 | 473 | 4 | 469 | 0.0 | 730 |
MS.gene026652.t1 | AT1G44170 | 72.961 | 466 | 126 | 0 | 8 | 473 | 4 | 469 | 0.0 | 730 |
MS.gene026652.t1 | AT1G44170 | 75.062 | 405 | 98 | 1 | 72 | 473 | 2 | 406 | 0.0 | 660 |
MS.gene026652.t1 | AT4G34240 | 67.304 | 471 | 154 | 0 | 11 | 481 | 70 | 540 | 0.0 | 658 |
MS.gene026652.t1 | AT4G34240 | 67.304 | 471 | 154 | 0 | 11 | 481 | 55 | 525 | 0.0 | 657 |
MS.gene026652.t1 | AT4G34240 | 70.960 | 396 | 115 | 0 | 86 | 481 | 3 | 398 | 0.0 | 582 |
MS.gene026652.t1 | AT4G36250 | 48.261 | 460 | 235 | 1 | 14 | 470 | 6 | 465 | 8.11e-167 | 479 |
MS.gene026652.t1 | AT4G34240 | 68.224 | 321 | 102 | 0 | 11 | 331 | 70 | 390 | 5.03e-155 | 446 |
MS.gene026652.t1 | AT3G66658 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 1.64e-42 | 159 |
MS.gene026652.t1 | AT3G66658 | 27.064 | 436 | 292 | 8 | 34 | 451 | 106 | 533 | 3.29e-42 | 158 |
MS.gene026652.t1 | AT1G74920 | 29.781 | 366 | 241 | 9 | 95 | 449 | 125 | 485 | 9.43e-40 | 150 |
MS.gene026652.t1 | AT1G74920 | 29.781 | 366 | 241 | 9 | 95 | 449 | 130 | 490 | 1.67e-39 | 149 |
MS.gene026652.t1 | AT1G23800 | 28.764 | 445 | 299 | 11 | 12 | 446 | 89 | 525 | 3.51e-38 | 146 |
MS.gene026652.t1 | AT1G79440 | 30.117 | 342 | 228 | 9 | 112 | 446 | 184 | 521 | 8.03e-35 | 137 |
MS.gene026652.t1 | AT3G48170 | 28.488 | 344 | 231 | 7 | 112 | 445 | 147 | 485 | 8.18e-35 | 136 |
MS.gene026652.t1 | AT3G48000 | 28.097 | 452 | 293 | 14 | 12 | 446 | 93 | 529 | 4.08e-33 | 132 |
MS.gene026652.t1 | AT3G24503 | 27.114 | 343 | 236 | 9 | 113 | 446 | 155 | 492 | 5.90e-27 | 114 |
MS.gene026652.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 92 | 508 | 6.37e-21 | 96.3 |
MS.gene026652.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 8.91e-21 | 95.5 |
MS.gene026652.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 8.91e-21 | 95.5 |
MS.gene026652.t1 | AT2G24270 | 25.349 | 430 | 294 | 13 | 14 | 429 | 52 | 468 | 9.29e-21 | 95.5 |
MS.gene026652.t1 | AT1G54100 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 4.95e-20 | 93.2 |
MS.gene026652.t1 | AT1G54100 | 22.714 | 339 | 246 | 7 | 116 | 442 | 154 | 488 | 4.95e-20 | 93.2 |
MS.gene026652.t1 | AT2G14170 | 25.362 | 414 | 273 | 16 | 50 | 445 | 82 | 477 | 1.57e-18 | 88.6 |
MS.gene026652.t1 | AT1G23800 | 29.804 | 255 | 166 | 7 | 12 | 259 | 89 | 337 | 2.04e-18 | 87.8 |
MS.gene026652.t1 | AT2G14170 | 25.362 | 414 | 273 | 16 | 50 | 445 | 191 | 586 | 2.46e-18 | 88.6 |
MS.gene026652.t1 | AT2G14170 | 25.469 | 373 | 245 | 14 | 50 | 406 | 191 | 546 | 8.87e-17 | 83.6 |
Find 83 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGATGATGACAAAGTTTC+TGG | 0.156174 | 1.4:-15017072 | MS.gene026652:CDS |
TTCTCAGTTGAAGGCACTTC+TGG | 0.189731 | 1.4:-15026390 | MS.gene026652:CDS |
CGATCGCTTGATAAAGCTTT+TGG | 0.222465 | 1.4:-15017091 | MS.gene026652:CDS |
TTATCACTTGATCCAGTAAT+TGG | 0.245135 | 1.4:-15018199 | MS.gene026652:CDS |
TGATTCAAATATTAACTTAC+AGG | 0.261532 | 1.4:-15017621 | MS.gene026652:intron |
GCAATTCATACTTTGCCTTT+TGG | 0.268675 | 1.4:-15015811 | MS.gene026652:CDS |
TTGAGAATAACGTTTGATTC+TGG | 0.302281 | 1.4:-15026440 | MS.gene026652:CDS |
GCTGCAATAGCTCCAATTAC+TGG | 0.309379 | 1.4:+15018187 | None:intergenic |
TTTGTTGTTATGATATAATC+TGG | 0.316109 | 1.4:+15017309 | None:intergenic |
GATTAGCCCTACTGTTCTAT+TGG | 0.328993 | 1.4:-15016902 | MS.gene026652:CDS |
TCGTTGCTGGCAAAACTGTT+AGG | 0.339610 | 1.4:-15018115 | MS.gene026652:CDS |
AGCTTTGATGTGATAAATTC+AGG | 0.353189 | 1.4:-15016515 | MS.gene026652:CDS |
GACTGTTTCTGCTGGTGGTT+TGG | 0.353589 | 1.4:-15016429 | MS.gene026652:CDS |
CATCAATCTCATCTTTGTAT+TGG | 0.356661 | 1.4:+15015663 | None:intergenic |
TCCAGCCACATCATCGTTGC+TGG | 0.362338 | 1.4:-15018128 | MS.gene026652:CDS |
GTTTCTGGTAAGATTGTTCA+TGG | 0.366193 | 1.4:-15017057 | MS.gene026652:CDS |
CCTCCAAGCTCCAGCACAAC+TGG | 0.367836 | 1.4:+15017662 | None:intergenic |
CTCATCTTTGTATTGGTGTA+TGG | 0.403429 | 1.4:+15015670 | None:intergenic |
ATATTTGAATCAACAACAAC+TGG | 0.414978 | 1.4:+15017632 | None:intergenic |
ACACCAGTTGTGCTGGAGCT+TGG | 0.416382 | 1.4:-15017665 | MS.gene026652:CDS |
CGTTGCTGGCAAAACTGTTA+GGG | 0.425700 | 1.4:-15018114 | MS.gene026652:CDS |
CTTAATTCGTACCGTGATGA+TGG | 0.427177 | 1.4:+15016825 | None:intergenic |
ATAATGAGCGAAGAGATATT+TGG | 0.444128 | 1.4:-15016859 | MS.gene026652:CDS |
ATGGAAAGTTTCTCAGTTGA+AGG | 0.449116 | 1.4:-15026399 | MS.gene026652:CDS |
TTTGTTAAGACTGTTTCTGC+TGG | 0.453254 | 1.4:-15016437 | MS.gene026652:CDS |
GATTGTTCATGGAGGTGAAA+AGG | 0.454910 | 1.4:-15017046 | MS.gene026652:CDS |
GATACTATTTCAGCTGAAGA+AGG | 0.460660 | 1.4:+15018587 | None:intergenic |
GCATTGGATGGCTCCGGAAA+AGG | 0.463175 | 1.4:-15018733 | MS.gene026652:intron |
ATTGCAAGGTGGCAACTAGA+AGG | 0.464455 | 1.4:-15017380 | MS.gene026652:intron |
GGAGTAGGTGAGAGTGGAGT+GGG | 0.469025 | 1.4:-15015787 | MS.gene026652:CDS |
CTGTATTACTGCAACAAAAG+TGG | 0.474056 | 1.4:-15018036 | MS.gene026652:CDS |
ATATATGCAGCAAGAGGCTT+CGG | 0.476234 | 1.4:+15016491 | None:intergenic |
GCACCTTACACCAGTTGTGC+TGG | 0.485174 | 1.4:-15017672 | MS.gene026652:CDS |
ATTGAGTACCTCTTGGATGA+AGG | 0.488247 | 1.4:+15026295 | None:intergenic |
GTTAAGACTGTTTCTGCTGG+TGG | 0.490673 | 1.4:-15016434 | MS.gene026652:CDS |
CTCATCTATAAGAGTTGTTG+AGG | 0.493781 | 1.4:-15018077 | MS.gene026652:CDS |
CCAGTTGTGCTGGAGCTTGG+AGG | 0.497518 | 1.4:-15017662 | MS.gene026652:CDS |
CACTCAAGGAATTGAAGCAT+TGG | 0.498600 | 1.4:-15018749 | MS.gene026652:CDS |
GAAGGATAATCGCTGGAAAG+TGG | 0.505649 | 1.4:-15017362 | MS.gene026652:CDS |
CTCATGTAAAACTGCACTCA+AGG | 0.507865 | 1.4:-15018763 | MS.gene026652:CDS |
GAGATTGATGAAGGCTCTCA+TGG | 0.510072 | 1.4:-15015650 | MS.gene026652:CDS |
GCTCCAGCACAACTGGTGTA+AGG | 0.510660 | 1.4:+15017669 | None:intergenic |
GGAAAGTGGGGTTGCAACAA+TGG | 0.510938 | 1.4:-15017348 | MS.gene026652:CDS |
TACAAAGATGAGATTGATGA+AGG | 0.513208 | 1.4:-15015659 | MS.gene026652:CDS |
GTAATTGGAGCTATTGCAGC+TGG | 0.513650 | 1.4:-15018184 | MS.gene026652:CDS |
AAGAGTGGCACGCATTGTTA+TGG | 0.524412 | 1.4:-15017708 | MS.gene026652:CDS |
AAGGATAATCGCTGGAAAGT+GGG | 0.525366 | 1.4:-15017361 | MS.gene026652:CDS |
ATTGAAGCATTGGATGGCTC+CGG | 0.525858 | 1.4:-15018739 | MS.gene026652:CDS |
AAAAGACTATGCTCCTAAGT+TGG | 0.527792 | 1.4:-15017289 | MS.gene026652:intron |
ATGAAGGCTCTCATGGGTGG+TGG | 0.534832 | 1.4:-15015643 | MS.gene026652:CDS |
GCCAGCAACGATGATGTGGC+TGG | 0.536814 | 1.4:+15018127 | None:intergenic |
TTTGGAGGAGTAGGTGAGAG+TGG | 0.537231 | 1.4:-15015793 | MS.gene026652:CDS |
GGGACATCCAATAGAACAGT+AGG | 0.538615 | 1.4:+15016895 | None:intergenic |
CTCTCACCTACTCCTCCAAA+AGG | 0.540508 | 1.4:+15015796 | None:intergenic |
ATCTTTGTATTGGTGTATGG+TGG | 0.551950 | 1.4:+15015673 | None:intergenic |
TCATCTATAAGAGTTGTTGA+GGG | 0.559074 | 1.4:-15018076 | MS.gene026652:CDS |
AGGAGTAGGTGAGAGTGGAG+TGG | 0.559793 | 1.4:-15015788 | MS.gene026652:CDS |
TGTATTACTGCAACAAAAGT+GGG | 0.565567 | 1.4:-15018035 | MS.gene026652:CDS |
GCAACTAGAAGGATAATCGC+TGG | 0.565895 | 1.4:-15017369 | MS.gene026652:CDS |
GTAAATATATATGCAGCAAG+AGG | 0.571237 | 1.4:+15016485 | None:intergenic |
TTAATTCGTACCGTGATGAT+GGG | 0.573561 | 1.4:+15016826 | None:intergenic |
GTAAGACTCGAAGCTACGAA+TGG | 0.580175 | 1.4:-15026418 | MS.gene026652:CDS |
ACCGTGATGATGGGAAGTAA+TGG | 0.581585 | 1.4:+15016835 | None:intergenic |
CAAGGAATTGAAGCATTGGA+TGG | 0.593249 | 1.4:-15018745 | MS.gene026652:CDS |
AAAACTGTTAGGGGAATACA+TGG | 0.600533 | 1.4:-15018104 | MS.gene026652:CDS |
AGGATAATCGCTGGAAAGTG+GGG | 0.609873 | 1.4:-15017360 | MS.gene026652:CDS |
GTGGCTGGAGAAATTTCTGA+TGG | 0.612827 | 1.4:+15018142 | None:intergenic |
TATTGCAGCTGGTAATGCTG+TGG | 0.623724 | 1.4:-15018173 | MS.gene026652:CDS |
GTTGCTGGCAAAACTGTTAG+GGG | 0.625264 | 1.4:-15018113 | MS.gene026652:CDS |
TCCATTACTTCCCATCATCA+CGG | 0.627032 | 1.4:-15016836 | MS.gene026652:intron |
AGCTGAATCCTTCATCCAAG+AGG | 0.631889 | 1.4:-15026303 | MS.gene026652:intron |
TACAAACGACAAGAAGCTCA+AGG | 0.637163 | 1.4:-15016465 | MS.gene026652:CDS |
GAAATAGTATCTGAACCACT+TGG | 0.643478 | 1.4:-15018575 | MS.gene026652:CDS |
AGTGGAGTGGGTGCATACCA+TGG | 0.646385 | 1.4:-15015775 | MS.gene026652:CDS |
GGACATCCAATAGAACAGTA+GGG | 0.647357 | 1.4:+15016896 | None:intergenic |
ATGATCAACACAACTCCAAG+TGG | 0.650557 | 1.4:+15018560 | None:intergenic |
GCTTTATCAAGCGATCGAAG+TGG | 0.653845 | 1.4:+15017097 | None:intergenic |
TTGTGTTGATCATCTCTGCA+TGG | 0.653993 | 1.4:-15018550 | MS.gene026652:CDS |
AGATTGATGAAGGCTCTCAT+GGG | 0.665748 | 1.4:-15015649 | MS.gene026652:CDS |
CTCATTATCAGAGAATCACG+CGG | 0.673973 | 1.4:+15016874 | None:intergenic |
TTGATGAAGGCTCTCATGGG+TGG | 0.678752 | 1.4:-15015646 | MS.gene026652:CDS |
TCTGGTAAGATTGTTCATGG+AGG | 0.703693 | 1.4:-15017054 | MS.gene026652:CDS |
TCATTATCAGAGAATCACGC+GGG | 0.717383 | 1.4:+15016875 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 15015626 | 15026528 | 15015626 | ID=MS.gene026652 |
chr1.4 | mRNA | 15015626 | 15026528 | 15015626 | ID=MS.gene026652.t1;Parent=MS.gene026652 |
chr1.4 | exon | 15026304 | 15026528 | 15026304 | ID=MS.gene026652.t1.exon1;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15026304 | 15026528 | 15026304 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15018734 | 15018802 | 15018734 | ID=MS.gene026652.t1.exon2;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15018734 | 15018802 | 15018734 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15018537 | 15018633 | 15018537 | ID=MS.gene026652.t1.exon3;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15018537 | 15018633 | 15018537 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15018017 | 15018223 | 15018017 | ID=MS.gene026652.t1.exon4;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15018017 | 15018223 | 15018017 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15017622 | 15017737 | 15017622 | ID=MS.gene026652.t1.exon5;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15017622 | 15017737 | 15017622 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15017290 | 15017394 | 15017290 | ID=MS.gene026652.t1.exon6;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15017290 | 15017394 | 15017290 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15017033 | 15017205 | 15017033 | ID=MS.gene026652.t1.exon7;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15017033 | 15017205 | 15017033 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15016837 | 15016927 | 15016837 | ID=MS.gene026652.t1.exon8;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15016837 | 15016927 | 15016837 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15016406 | 15016555 | 15016406 | ID=MS.gene026652.t1.exon9;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15016406 | 15016555 | 15016406 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
chr1.4 | exon | 15015626 | 15015836 | 15015626 | ID=MS.gene026652.t1.exon10;Parent=MS.gene026652.t1 |
chr1.4 | CDS | 15015626 | 15015836 | 15015626 | ID=cds.MS.gene026652.t1;Parent=MS.gene026652.t1 |
Gene Sequence |
Protein sequence |