Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028066.t1 | XP_024639787.1 | 74.2 | 753 | 153 | 8 | 2 | 721 | 98 | 842 | 3.40E-302 | 1047.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028066.t1 | Q9FHJ6 | 61.9 | 494 | 184 | 3 | 141 | 634 | 297 | 786 | 2.5e-181 | 637.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028066.t1 | A0A396HQ15 | 74.2 | 753 | 153 | 8 | 2 | 721 | 98 | 842 | 2.4e-302 | 1047.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028066 | MS.gene07051 | PPI |
| MS.gene08109 | MS.gene028066 | PPI |
| MS.gene28807 | MS.gene028066 | PPI |
| MS.gene028066 | MS.gene041861 | PPI |
| MS.gene028066 | MS.gene044021 | PPI |
| MS.gene028066 | MS.gene072702 | PPI |
| MS.gene028066 | MS.gene61735 | PPI |
| MS.gene028066 | MS.gene061260 | PPI |
| MS.gene028066 | MS.gene041794 | PPI |
| MS.gene028066 | MS.gene67108 | PPI |
| MS.gene24383 | MS.gene028066 | PPI |
| MS.gene028066 | MS.gene04079 | PPI |
| MS.gene062778 | MS.gene028066 | PPI |
| MS.gene028066 | MS.gene04418 | PPI |
| MS.gene22500 | MS.gene028066 | PPI |
| MS.gene05640 | MS.gene028066 | PPI |
| MS.gene61736 | MS.gene028066 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028066.t1 | MTR_2g041270 | 60.455 | 483 | 187 | 3 | 108 | 589 | 148 | 627 | 0.0 | 617 |
| MS.gene028066.t1 | MTR_3g047950 | 50.202 | 496 | 221 | 5 | 105 | 587 | 101 | 583 | 3.93e-169 | 508 |
| MS.gene028066.t1 | MTR_4g109580 | 35.255 | 451 | 274 | 7 | 145 | 586 | 173 | 614 | 1.84e-80 | 270 |
| MS.gene028066.t1 | MTR_4g109580 | 37.047 | 386 | 226 | 6 | 145 | 521 | 173 | 550 | 4.64e-73 | 248 |
| MS.gene028066.t1 | MTR_4g109590 | 25.191 | 262 | 153 | 7 | 314 | 564 | 18 | 247 | 2.45e-18 | 86.3 |
| MS.gene028066.t1 | MTR_4g070090 | 23.583 | 441 | 300 | 17 | 155 | 578 | 42 | 462 | 8.10e-16 | 81.6 |
| MS.gene028066.t1 | MTR_5g027390 | 23.573 | 403 | 276 | 15 | 193 | 578 | 43 | 430 | 7.30e-15 | 78.2 |
| MS.gene028066.t1 | MTR_5g026880 | 82.051 | 39 | 7 | 0 | 4 | 42 | 90 | 128 | 9.73e-14 | 69.3 |
| MS.gene028066.t1 | MTR_5g078250 | 21.728 | 382 | 270 | 12 | 146 | 517 | 8 | 370 | 7.72e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028066.t1 | AT5G45400 | 57.237 | 608 | 237 | 9 | 110 | 715 | 267 | 853 | 0.0 | 708 |
| MS.gene028066.t1 | AT4G19130 | 51.303 | 729 | 294 | 16 | 2 | 715 | 103 | 785 | 0.0 | 685 |
| MS.gene028066.t1 | AT4G19130 | 51.303 | 729 | 294 | 16 | 2 | 715 | 102 | 784 | 0.0 | 685 |
| MS.gene028066.t1 | AT2G06510 | 58.723 | 470 | 188 | 4 | 116 | 583 | 173 | 638 | 0.0 | 582 |
| MS.gene028066.t1 | AT2G06510 | 57.172 | 488 | 203 | 4 | 98 | 583 | 132 | 615 | 0.0 | 582 |
| MS.gene028066.t1 | AT5G08020 | 34.205 | 497 | 300 | 10 | 109 | 590 | 120 | 604 | 1.32e-87 | 289 |
| MS.gene028066.t1 | AT5G61000 | 33.333 | 498 | 304 | 10 | 109 | 590 | 144 | 629 | 1.41e-78 | 265 |
| MS.gene028066.t1 | AT1G52950 | 21.769 | 441 | 293 | 17 | 146 | 559 | 10 | 425 | 5.27e-15 | 79.3 |
Find 191 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGGGCATTTCCAATTT+TGG | 0.090395 | 5.3:+16680309 | MS.gene028066:CDS |
| CAAATTAAAGATGAAAATTT+AGG | 0.110279 | 5.3:+16680535 | MS.gene028066:CDS |
| CCATTTCCCATCTCCATTAA+TGG | 0.173464 | 5.3:-16680680 | None:intergenic |
| ACTAATACTGGTAGAGATTA+TGG | 0.192201 | 5.3:+16681171 | MS.gene028066:CDS |
| TACTGTCTCCCTTGATTTGC+TGG | 0.197849 | 5.3:-16681198 | None:intergenic |
| TTCTCGCTTAGCCGTTATTC+TGG | 0.243165 | 5.3:-16679777 | None:intergenic |
| TCTTCCTGTAGGTTCTCTAT+TGG | 0.256643 | 5.3:-16679678 | None:intergenic |
| TTGGGACATTCCTCCCTTCC+TGG | 0.264291 | 5.3:-16680450 | None:intergenic |
| CATTGCCACCAGCCAATTAT+TGG | 0.268493 | 5.3:+16680381 | MS.gene028066:CDS |
| GTATTAGTGTTGCTATTTAT+AGG | 0.272455 | 5.3:-16681156 | None:intergenic |
| CAATCAGCTGCTGGTCAATT+AGG | 0.281184 | 5.3:+16679401 | MS.gene028066:CDS |
| AATCAGGTTCTACCAATAAT+TGG | 0.283594 | 5.3:-16680393 | None:intergenic |
| TGTGTTTATTCTAACACTTC+TGG | 0.288309 | 5.3:+16679542 | MS.gene028066:CDS |
| CAGGTTGATTTCTAAGACTT+AGG | 0.296689 | 5.3:-16681320 | None:intergenic |
| CTGTTGATGCTTGTGATTAT+AGG | 0.300029 | 5.3:+16680725 | MS.gene028066:CDS |
| TTCAGAGAATCATCTAGTTT+TGG | 0.304942 | 5.3:+16680484 | MS.gene028066:CDS |
| TATGGATTCAAAGCAGATAT+TGG | 0.313616 | 5.3:-16679731 | None:intergenic |
| GACTTCAATGGGAAGTCTAT+TGG | 0.320866 | 5.3:+16680355 | MS.gene028066:CDS |
| CAGGTGGTGCTTCGGGTAAT+TGG | 0.321850 | 5.3:+16681388 | MS.gene028066:CDS |
| ATTGTCCACATATTCTGATA+TGG | 0.329169 | 5.3:-16679749 | None:intergenic |
| GATTGTGCAGGTGCTTCTTT+TGG | 0.329678 | 5.3:-16679353 | None:intergenic |
| CTTGACAAATGGGACTTGAT+TGG | 0.331100 | 5.3:+16679314 | MS.gene028066:CDS |
| CATTGGTGACATTGAAAGTA+TGG | 0.337409 | 5.3:+16680093 | MS.gene028066:CDS |
| AAATTAAAGATGAAAATTTA+GGG | 0.343214 | 5.3:+16680536 | MS.gene028066:CDS |
| AAATGTGGCTGTGCCATCTA+TGG | 0.351761 | 5.3:+16679490 | MS.gene028066:CDS |
| GGGATTATACTTGGGGCTGG+GGG | 0.353000 | 5.3:-16679710 | None:intergenic |
| GCAAATCAAGGGAGACAGTA+TGG | 0.353573 | 5.3:+16681201 | MS.gene028066:CDS |
| CTGCAAAATATTTGCGACTC+TGG | 0.355243 | 5.3:+16680292 | MS.gene028066:CDS |
| GTAAAAGCCTCTGGAAAATC+AGG | 0.366700 | 5.3:-16680409 | None:intergenic |
| TGCAAAATATTTGCGACTCT+GGG | 0.373210 | 5.3:+16680293 | MS.gene028066:CDS |
| AATATGCTGATAGGAATCAT+AGG | 0.374551 | 5.3:+16681531 | MS.gene028066:CDS |
| GTTGGATCAGGTGGTGCTTC+GGG | 0.375032 | 5.3:+16681381 | MS.gene028066:CDS |
| AACTCTGCTATCAACACAAC+TGG | 0.376895 | 5.3:+16681087 | MS.gene028066:CDS |
| TGGCACCGGTCTATTCAAAT+TGG | 0.380597 | 5.3:-16679594 | None:intergenic |
| AGATAGGAAATGTAACAAAA+AGG | 0.384124 | 5.3:+16680654 | MS.gene028066:CDS |
| TGGGATTATACTTGGGGCTG+GGG | 0.388493 | 5.3:-16679711 | None:intergenic |
| ATCTGAATCTAAATCTCTTC+TGG | 0.391043 | 5.3:+16681017 | MS.gene028066:CDS |
| AGGGTGATCTCTTGATCATT+AGG | 0.394098 | 5.3:-16679995 | None:intergenic |
| GGCCAGACATGTCTTTCAAC+TGG | 0.394180 | 5.3:-16680216 | None:intergenic |
| ACTTCAATGGGAAGTCTATT+GGG | 0.394181 | 5.3:+16680356 | MS.gene028066:CDS |
| ATGGATTCAAAGCAGATATT+GGG | 0.394808 | 5.3:-16679730 | None:intergenic |
| TGGATGTTATACTTGACAAA+TGG | 0.395820 | 5.3:+16679303 | MS.gene028066:CDS |
| ATAAATAGCAACACTAATAC+TGG | 0.396439 | 5.3:+16681159 | MS.gene028066:CDS |
| TGCTATAGATGGCAGCATAT+TGG | 0.401374 | 5.3:+16681414 | MS.gene028066:CDS |
| ACTGTCTCCCTTGATTTGCT+GGG | 0.404586 | 5.3:-16681197 | None:intergenic |
| GTAAAGTCTATCTTGTTTCA+AGG | 0.408554 | 5.3:+16679933 | MS.gene028066:CDS |
| TGTTGGATCAGGTGGTGCTT+CGG | 0.416969 | 5.3:+16681380 | MS.gene028066:CDS |
| AAAAGCACAAGAAGGTCATC+AGG | 0.419673 | 5.3:-16681578 | None:intergenic |
| GGACTTCTGAGAAGCCTGAT+TGG | 0.419699 | 5.3:+16680557 | MS.gene028066:CDS |
| CCATTAATGGAGATGGGAAA+TGG | 0.422381 | 5.3:+16680680 | MS.gene028066:CDS |
| TGCGACACAAATATGCTGAT+AGG | 0.425685 | 5.3:+16681522 | MS.gene028066:CDS |
| AATAGACCGGTGCCAGTCAA+TGG | 0.428354 | 5.3:+16679602 | MS.gene028066:CDS |
| CTAATACTGGTAGAGATTAT+GGG | 0.434473 | 5.3:+16681172 | MS.gene028066:CDS |
| GCAGATATTGGGATTATACT+TGG | 0.435057 | 5.3:-16679719 | None:intergenic |
| GCCAGAGTAAATGCTTTCAA+TGG | 0.441532 | 5.3:+16681459 | MS.gene028066:CDS |
| CTATTTATAGGATTATATAC+TGG | 0.442454 | 5.3:-16681144 | None:intergenic |
| ACAGCTTGTCCTATCATGAT+AGG | 0.445959 | 5.3:+16680631 | MS.gene028066:CDS |
| CTTTCAATGGGAAGTCTGTT+GGG | 0.446726 | 5.3:+16681472 | MS.gene028066:CDS |
| AACAGGGTGTCTGTTGGATC+AGG | 0.448421 | 5.3:+16681369 | MS.gene028066:CDS |
| GCCAGAGTAAATGACTTCAA+TGG | 0.448872 | 5.3:+16680343 | MS.gene028066:CDS |
| ATAGATGGCACAGCCACATT+TGG | 0.450374 | 5.3:-16679488 | None:intergenic |
| GCTTTCAATGGGAAGTCTGT+TGG | 0.450488 | 5.3:+16681471 | MS.gene028066:CDS |
| TGTAGCAACTGTGGAGGCTC+TGG | 0.451488 | 5.3:+16681279 | MS.gene028066:CDS |
| GTAATTGGAATTGCTATAGA+TGG | 0.451871 | 5.3:+16681403 | MS.gene028066:CDS |
| GACGGAAATTGTAAATCTGC+TGG | 0.454634 | 5.3:-16680069 | None:intergenic |
| ATTCGGACGGTGGAGAAATA+CGG | 0.455045 | 5.3:+16679858 | MS.gene028066:CDS |
| ATGGCAGCATATTGGACATT+GGG | 0.457784 | 5.3:+16681422 | MS.gene028066:CDS |
| TTGGGATTATACTTGGGGCT+GGG | 0.458057 | 5.3:-16679712 | None:intergenic |
| TTCTATGATGTAACTGAAGT+TGG | 0.458684 | 5.3:+16679911 | MS.gene028066:CDS |
| CAATAATTGGCTGGTGGCAA+TGG | 0.462805 | 5.3:-16680380 | None:intergenic |
| GCTATCAACACAACTGGACC+AGG | 0.466648 | 5.3:+16681093 | MS.gene028066:CDS |
| AAGGTTACCATTAATGGAGA+TGG | 0.467707 | 5.3:+16680673 | MS.gene028066:CDS |
| TTCCTATCTCCTATCATGAT+AGG | 0.468609 | 5.3:-16680640 | None:intergenic |
| CCAGAGTAAATGACTTCAAT+GGG | 0.469838 | 5.3:+16680344 | MS.gene028066:CDS |
| GTTCAAGTTAAAAGTAAAAG+AGG | 0.469995 | 5.3:+16680927 | MS.gene028066:CDS |
| GAAGTGTTGAATTAACTGTA+TGG | 0.471291 | 5.3:+16680239 | MS.gene028066:CDS |
| TTGAAAGCATTTACTCTGGC+AGG | 0.471556 | 5.3:-16681456 | None:intergenic |
| ATGGGAAATGGCGTTGTGTA+AGG | 0.472745 | 5.3:+16680692 | MS.gene028066:CDS |
| GACAATTAAAGCCAGAATAA+CGG | 0.475855 | 5.3:+16679766 | MS.gene028066:CDS |
| TCTCTCAGTGTAAAAGCCTC+TGG | 0.476862 | 5.3:-16680418 | None:intergenic |
| AACGGTGGTTCCTATGCAGC+TGG | 0.480530 | 5.3:+16679452 | MS.gene028066:CDS |
| CAGATATTGGGATTATACTT+GGG | 0.483457 | 5.3:-16679718 | None:intergenic |
| GGATGTTATACTTGACAAAT+GGG | 0.487105 | 5.3:+16679304 | MS.gene028066:CDS |
| CTCCAGTTGAAAGACATGTC+TGG | 0.498906 | 5.3:+16680214 | MS.gene028066:CDS |
| TAAAGTCTATCTTGTTTCAA+GGG | 0.500547 | 5.3:+16679934 | MS.gene028066:CDS |
| ACAGTCGGACGATCCATAGA+TGG | 0.501554 | 5.3:-16679503 | None:intergenic |
| ATTGGGATTATACTTGGGGC+TGG | 0.502489 | 5.3:-16679713 | None:intergenic |
| CCCATTGAAGTCATTTACTC+TGG | 0.505729 | 5.3:-16680344 | None:intergenic |
| CATACTTTCAATGTCACCAA+TGG | 0.506813 | 5.3:-16680092 | None:intergenic |
| GTTGATAGCAGAGTTAATAG+TGG | 0.507516 | 5.3:-16681079 | None:intergenic |
| GGTGGCGTAGCTTGTCCACT+TGG | 0.507990 | 5.3:-16681123 | None:intergenic |
| AAGTGTTGAATTAACTGTAT+GGG | 0.508629 | 5.3:+16680240 | MS.gene028066:CDS |
| CCAGAGTAAATGCTTTCAAT+GGG | 0.511038 | 5.3:+16681460 | MS.gene028066:CDS |
| CTCTGAAAATAGATTGACTT+GGG | 0.512351 | 5.3:-16680468 | None:intergenic |
| ATATGCTGATAGGAATCATA+GGG | 0.515936 | 5.3:+16681532 | MS.gene028066:CDS |
| GCACAGATAGATATCCAATC+AGG | 0.516540 | 5.3:-16680571 | None:intergenic |
| ATCATTAATGCCAGCTGCAT+AGG | 0.517325 | 5.3:-16679462 | None:intergenic |
| GTCCTATCATGATAGGAGAT+AGG | 0.520523 | 5.3:+16680638 | MS.gene028066:CDS |
| ATTTACAATTTCCGTCCCAT+TGG | 0.520615 | 5.3:+16680076 | MS.gene028066:CDS |
| TATGGGACCCCAGCAAATCA+AGG | 0.522049 | 5.3:+16681189 | MS.gene028066:CDS |
| TGTCCACTTGGAAGGCACCC+TGG | 0.524694 | 5.3:-16681111 | None:intergenic |
| TGAATCCATATCAGAATATG+TGG | 0.525989 | 5.3:+16679744 | MS.gene028066:CDS |
| ATACTTTCAATGTCACCAAT+GGG | 0.528293 | 5.3:-16680091 | None:intergenic |
| GGCAACTTGCTTTAATGCCG+TGG | 0.529916 | 5.3:+16679880 | MS.gene028066:CDS |
| TTCGGACGGTGGAGAAATAC+GGG | 0.532082 | 5.3:+16679859 | MS.gene028066:CDS |
| ATCAACCTGAACAGTCTGAT+GGG | 0.532694 | 5.3:+16681334 | MS.gene028066:CDS |
| ATGATCACACTGGAATGACT+TGG | 0.534220 | 5.3:+16680770 | MS.gene028066:CDS |
| ATAGACCGGTGCCAGTCAAT+GGG | 0.538835 | 5.3:+16679603 | MS.gene028066:CDS |
| CAATCTGATGTGAGTCATGC+AGG | 0.538866 | 5.3:+16679371 | MS.gene028066:CDS |
| GTATAACTGATGTGATATCA+AGG | 0.540445 | 5.3:-16680015 | None:intergenic |
| TTTCTCATGATTGATGCTGT+AGG | 0.540594 | 5.3:-16680163 | None:intergenic |
| CCCATTGAAAGCATTTACTC+TGG | 0.541065 | 5.3:-16681460 | None:intergenic |
| ACCTGAACAGTCTGATGGGG+GGG | 0.541556 | 5.3:+16681338 | MS.gene028066:CDS |
| GGAGCATCATTTCTTCCTGT+AGG | 0.542933 | 5.3:-16679689 | None:intergenic |
| TATAACAATGCCCGAGGTGA+GGG | 0.549414 | 5.3:+16679809 | MS.gene028066:CDS |
| AACTGTAGTGAAAGCAGAGA+AGG | 0.549497 | 5.3:+16680981 | MS.gene028066:CDS |
| GATGGCAGCATATTGGACAT+TGG | 0.549717 | 5.3:+16681421 | MS.gene028066:CDS |
| CTTGATTGGAAAACCTGTCC+CGG | 0.551122 | 5.3:+16679328 | MS.gene028066:CDS |
| GGCTGTCGGTACATAGGCTG+AGG | 0.554196 | 5.3:-16679641 | None:intergenic |
| GGAGATGGCTGTCGGTACAT+AGG | 0.555014 | 5.3:-16679647 | None:intergenic |
| AGGTTCTACCAATAATTGGC+TGG | 0.555216 | 5.3:-16680389 | None:intergenic |
| ATTTGCAGAAATCATCCGTA+AGG | 0.556193 | 5.3:+16680885 | MS.gene028066:CDS |
| GCGTAGCTTGTCCACTTGGA+AGG | 0.557207 | 5.3:-16681119 | None:intergenic |
| GCAAGATACAGTACATCTGA+TGG | 0.557340 | 5.3:+16679569 | MS.gene028066:CDS |
| TAACGGCTAAGCGAGAACTC+AGG | 0.558612 | 5.3:+16679783 | MS.gene028066:CDS |
| ACGGAAATTGTAAATCTGCT+GGG | 0.558897 | 5.3:-16680068 | None:intergenic |
| TGGAGCCAATTTGAATAGAC+CGG | 0.560042 | 5.3:+16679589 | MS.gene028066:CDS |
| CTATTGGTGTACATAGGAGA+TGG | 0.561342 | 5.3:-16679662 | None:intergenic |
| CTGTCTCCCTTGATTTGCTG+GGG | 0.561982 | 5.3:-16681196 | None:intergenic |
| GGAGGGTGGCGAGATCATCA+TGG | 0.563260 | 5.3:+16680807 | MS.gene028066:CDS |
| AGGTTACCATTAATGGAGAT+GGG | 0.564707 | 5.3:+16680674 | MS.gene028066:CDS |
| TACGCCAACAGGGTGTCTGT+TGG | 0.564868 | 5.3:+16681363 | MS.gene028066:CDS |
| AGAGAATGGTTTGACCAGGA+AGG | 0.566968 | 5.3:+16680436 | MS.gene028066:CDS |
| TAAGACCCATTGACTGGCAC+CGG | 0.569305 | 5.3:-16679608 | None:intergenic |
| AGATATTGGGATTATACTTG+GGG | 0.572799 | 5.3:-16679717 | None:intergenic |
| AGTGTTGAATTAACTGTATG+GGG | 0.577662 | 5.3:+16680241 | MS.gene028066:CDS |
| ATTATCAACTTTATCAAACT+CGG | 0.579996 | 5.3:-16681496 | None:intergenic |
| AACGGCTAAGCGAGAACTCA+GGG | 0.580930 | 5.3:+16679784 | MS.gene028066:CDS |
| GGAGATGTACAATCAGCTGC+TGG | 0.581552 | 5.3:+16679392 | MS.gene028066:CDS |
| AGGGTGTCTGTTGGATCAGG+TGG | 0.584100 | 5.3:+16681372 | MS.gene028066:CDS |
| CTATAACAATGCCCGAGGTG+AGG | 0.587915 | 5.3:+16679808 | MS.gene028066:CDS |
| CTTAAGTCTGAGAAAGCAGA+AGG | 0.587995 | 5.3:+16681054 | MS.gene028066:CDS |
| ATTTAGTGAAGAGAACCTTA+CGG | 0.589040 | 5.3:-16680900 | None:intergenic |
| AATCAACCTGAACAGTCTGA+TGG | 0.589455 | 5.3:+16681333 | MS.gene028066:CDS |
| GAAAATTCACAGTATTTGAA+CGG | 0.598419 | 5.3:+16679434 | MS.gene028066:CDS |
| GAGGGTGGCGAGATCATCAT+GGG | 0.599256 | 5.3:+16680808 | MS.gene028066:CDS |
| GAATAAACACAGCTAGCTGA+AGG | 0.599996 | 5.3:-16679530 | None:intergenic |
| TGATCACACTGGAATGACTT+GGG | 0.602012 | 5.3:+16680771 | MS.gene028066:CDS |
| CTACATGACATGTATGAACC+AGG | 0.602038 | 5.3:-16681261 | None:intergenic |
| AAAGTCTATCTTGTTTCAAG+GGG | 0.605100 | 5.3:+16679935 | MS.gene028066:CDS |
| TCTCTGAAAATAGATTGACT+TGG | 0.605586 | 5.3:-16680469 | None:intergenic |
| GAGAATGGTTTGACCAGGAA+GGG | 0.605835 | 5.3:+16680437 | MS.gene028066:CDS |
| GAGTTATCATCGTCAAGACA+TGG | 0.606744 | 5.3:-16680040 | None:intergenic |
| CGAACATAAGACCCATTGAC+TGG | 0.607967 | 5.3:-16679614 | None:intergenic |
| TTTATAGGATTATATACTGG+TGG | 0.609635 | 5.3:-16681141 | None:intergenic |
| TGATCTCTTGATCATTAGGA+AGG | 0.611567 | 5.3:-16679991 | None:intergenic |
| ACTGAGAGAATGGTTTGACC+AGG | 0.616882 | 5.3:+16680432 | MS.gene028066:CDS |
| CAACCTGAACAGTCTGATGG+GGG | 0.617878 | 5.3:+16681336 | MS.gene028066:CDS |
| TTGCTAGCAAAAGCACAAGA+AGG | 0.618421 | 5.3:-16681586 | None:intergenic |
| AATGGTTTGACCAGGAAGGG+AGG | 0.620111 | 5.3:+16680440 | MS.gene028066:CDS |
| TATGGAAAGCAACAGCATTG+TGG | 0.620227 | 5.3:+16680111 | MS.gene028066:CDS |
| ATGGGACCCCAGCAAATCAA+GGG | 0.620842 | 5.3:+16681190 | MS.gene028066:CDS |
| GGTTCTCTATTGGTGTACAT+AGG | 0.627445 | 5.3:-16679668 | None:intergenic |
| ATCATAGAACTGATCAGCCA+CGG | 0.627780 | 5.3:-16679897 | None:intergenic |
| TGACTCACATCAGATTGTGC+AGG | 0.628551 | 5.3:-16679365 | None:intergenic |
| TACACCAATAGAGAACCTAC+AGG | 0.628627 | 5.3:+16679674 | MS.gene028066:CDS |
| CGGAAATTGTAAATCTGCTG+GGG | 0.629297 | 5.3:-16680067 | None:intergenic |
| TCAACCTGAACAGTCTGATG+GGG | 0.633489 | 5.3:+16681335 | MS.gene028066:CDS |
| CATTAATGATAGACCAAATG+TGG | 0.633940 | 5.3:+16679475 | MS.gene028066:CDS |
| AATTCACAGTATTTGAACGG+TGG | 0.635714 | 5.3:+16679437 | MS.gene028066:CDS |
| AACCTGAACAGTCTGATGGG+GGG | 0.636864 | 5.3:+16681337 | MS.gene028066:CDS |
| TTCTACCAATAATTGGCTGG+TGG | 0.640568 | 5.3:-16680386 | None:intergenic |
| TACATGTCATGTAGCAACTG+TGG | 0.642138 | 5.3:+16681270 | MS.gene028066:CDS |
| AGCACAAGAAGGTCATCAGG+AGG | 0.647215 | 5.3:-16681575 | None:intergenic |
| GCAAAATATTTGCGACTCTG+GGG | 0.647962 | 5.3:+16680294 | MS.gene028066:CDS |
| ATACAGTTAATTCAACACTT+CGG | 0.648500 | 5.3:-16680237 | None:intergenic |
| TGTCGGTACATAGGCTGAGG+AGG | 0.649146 | 5.3:-16679638 | None:intergenic |
| TTTCAATGTCACCAATGGGA+CGG | 0.650355 | 5.3:-16680087 | None:intergenic |
| TGATCCAACAGACACCCTGT+TGG | 0.659476 | 5.3:-16681367 | None:intergenic |
| CTAGCTGAAGGATTCACAGT+CGG | 0.661743 | 5.3:-16679518 | None:intergenic |
| GGACCAGGGTGCCTTCCAAG+TGG | 0.662955 | 5.3:+16681108 | MS.gene028066:CDS |
| ATGCAGATACATGATCACAC+TGG | 0.663859 | 5.3:+16680760 | MS.gene028066:CDS |
| ATGTCATGTAGCAACTGTGG+AGG | 0.670037 | 5.3:+16681273 | MS.gene028066:CDS |
| TATAACTGATGTGATATCAA+GGG | 0.673788 | 5.3:-16680014 | None:intergenic |
| CATTGTGGATGTGATTGCTG+TGG | 0.675524 | 5.3:+16680126 | MS.gene028066:CDS |
| TGTACATAGGAGATGGCTGT+CGG | 0.677597 | 5.3:-16679655 | None:intergenic |
| CTATCAACACAACTGGACCA+GGG | 0.680062 | 5.3:+16681094 | MS.gene028066:CDS |
| AGGGTCTATAACAATGCCCG+AGG | 0.697756 | 5.3:+16679803 | MS.gene028066:CDS |
| GTGTTGAATTAACTGTATGG+GGG | 0.715516 | 5.3:+16680242 | MS.gene028066:CDS |
| TATGCTGATAGGAATCATAG+GGG | 0.719538 | 5.3:+16681533 | MS.gene028066:CDS |
| ATGCTGATAGGAATCATAGG+GGG | 0.737640 | 5.3:+16681534 | MS.gene028066:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAGATGAAAATTTA+GGG | + | chr5.3:16680536-16680555 | MS.gene028066:CDS | 10.0% |
| !! | CAAATTAAAGATGAAAATTT+AGG | + | chr5.3:16680535-16680554 | MS.gene028066:CDS | 15.0% |
| !! | ATCAAAACTAAAAAACTAAC+AGG | - | chr5.3:16679146-16679165 | None:intergenic | 20.0% |
| !! | ATTATCAACTTTATCAAACT+CGG | - | chr5.3:16681499-16681518 | None:intergenic | 20.0% |
| !! | CTATTTATAGGATTATATAC+TGG | - | chr5.3:16681147-16681166 | None:intergenic | 20.0% |
| !! | TAGTTGAAGAATTTCATTAA+AGG | + | chr5.3:16679110-16679129 | MS.gene028066:intron | 20.0% |
| !!! | AGTATTTTCTTTTGATCTTT+TGG | + | chr5.3:16679835-16679854 | MS.gene028066:CDS | 20.0% |
| !!! | TTTAGTTTTGATATTGTTGA+AGG | + | chr5.3:16679154-16679173 | MS.gene028066:intron | 20.0% |
| ! | AACAAAAAGGTTACCATTAA+TGG | + | chr5.3:16680667-16680686 | MS.gene028066:CDS | 25.0% |
| ! | AGATAGGAAATGTAACAAAA+AGG | + | chr5.3:16680654-16680673 | MS.gene028066:CDS | 25.0% |
| ! | ATAAATAGCAACACTAATAC+TGG | + | chr5.3:16681159-16681178 | MS.gene028066:CDS | 25.0% |
| ! | ATACAGTTAATTCAACACTT+CGG | - | chr5.3:16680240-16680259 | None:intergenic | 25.0% |
| ! | GAAAATTCACAGTATTTGAA+CGG | + | chr5.3:16679434-16679453 | MS.gene028066:CDS | 25.0% |
| ! | TATAACTGATGTGATATCAA+GGG | - | chr5.3:16680017-16680036 | None:intergenic | 25.0% |
| ! | TTTATAGGATTATATACTGG+TGG | - | chr5.3:16681144-16681163 | None:intergenic | 25.0% |
| !! | AGAAAATGTAAATCTTTTGC+AGG | - | chr5.3:16680838-16680857 | None:intergenic | 25.0% |
| !! | GTTCAAGTTAAAAGTAAAAG+AGG | + | chr5.3:16680927-16680946 | MS.gene028066:CDS | 25.0% |
| !! | TAAAGTCTATCTTGTTTCAA+GGG | + | chr5.3:16679934-16679953 | MS.gene028066:CDS | 25.0% |
| !! | TTCTTTTGATCTTTTGGATT+CGG | + | chr5.3:16679841-16679860 | MS.gene028066:CDS | 25.0% |
| !!! | AAGTGTTGAATTAACTGTAT+GGG | + | chr5.3:16680240-16680259 | MS.gene028066:CDS | 25.0% |
| !!! | GTATTAGTGTTGCTATTTAT+AGG | - | chr5.3:16681159-16681178 | None:intergenic | 25.0% |
| AAGAAAAAAAACTGCTATGC+TGG | - | chr5.3:16681230-16681249 | None:intergenic | 30.0% | |
| AATATGCTGATAGGAATCAT+AGG | + | chr5.3:16681531-16681550 | MS.gene028066:CDS | 30.0% | |
| AATCAGGTTCTACCAATAAT+TGG | - | chr5.3:16680396-16680415 | None:intergenic | 30.0% | |
| AATTATCATCATTGTTGAGC+TGG | + | chr5.3:16679283-16679302 | MS.gene028066:intron | 30.0% | |
| ACTAATACTGGTAGAGATTA+TGG | + | chr5.3:16681171-16681190 | MS.gene028066:CDS | 30.0% | |
| AGATATTGGGATTATACTTG+GGG | - | chr5.3:16679720-16679739 | None:intergenic | 30.0% | |
| ATACTTTCAATGTCACCAAT+GGG | - | chr5.3:16680094-16680113 | None:intergenic | 30.0% | |
| ATATGCTGATAGGAATCATA+GGG | + | chr5.3:16681532-16681551 | MS.gene028066:CDS | 30.0% | |
| ATCTGAATCTAAATCTCTTC+TGG | + | chr5.3:16681017-16681036 | MS.gene028066:CDS | 30.0% | |
| ATGGATTCAAAGCAGATATT+GGG | - | chr5.3:16679733-16679752 | None:intergenic | 30.0% | |
| ATTGTCCACATATTCTGATA+TGG | - | chr5.3:16679752-16679771 | None:intergenic | 30.0% | |
| ATTTAGTGAAGAGAACCTTA+CGG | - | chr5.3:16680903-16680922 | None:intergenic | 30.0% | |
| CAGATATTGGGATTATACTT+GGG | - | chr5.3:16679721-16679740 | None:intergenic | 30.0% | |
| CATTAATGATAGACCAAATG+TGG | + | chr5.3:16679475-16679494 | MS.gene028066:CDS | 30.0% | |
| CTAATACTGGTAGAGATTAT+GGG | + | chr5.3:16681172-16681191 | MS.gene028066:CDS | 30.0% | |
| GACAATTAAAGCCAGAATAA+CGG | + | chr5.3:16679766-16679785 | MS.gene028066:CDS | 30.0% | |
| GCATCAATCATGAGAAAAAA+TGG | + | chr5.3:16680169-16680188 | MS.gene028066:CDS | 30.0% | |
| GGATGTTATACTTGACAAAT+GGG | + | chr5.3:16679304-16679323 | MS.gene028066:CDS | 30.0% | |
| GTAATTGGAATTGCTATAGA+TGG | + | chr5.3:16681403-16681422 | MS.gene028066:CDS | 30.0% | |
| GTATAACTGATGTGATATCA+AGG | - | chr5.3:16680018-16680037 | None:intergenic | 30.0% | |
| TATGGATTCAAAGCAGATAT+TGG | - | chr5.3:16679734-16679753 | None:intergenic | 30.0% | |
| TGAATCCATATCAGAATATG+TGG | + | chr5.3:16679744-16679763 | MS.gene028066:CDS | 30.0% | |
| TGGATGTTATACTTGACAAA+TGG | + | chr5.3:16679303-16679322 | MS.gene028066:CDS | 30.0% | |
| TGTGTTTATTCTAACACTTC+TGG | + | chr5.3:16679542-16679561 | MS.gene028066:CDS | 30.0% | |
| TTCTATGATGTAACTGAAGT+TGG | + | chr5.3:16679911-16679930 | MS.gene028066:CDS | 30.0% | |
| ! | AAAGTCTATCTTGTTTCAAG+GGG | + | chr5.3:16679935-16679954 | MS.gene028066:CDS | 30.0% |
| ! | AGTGTTGAATTAACTGTATG+GGG | + | chr5.3:16680241-16680260 | MS.gene028066:CDS | 30.0% |
| ! | CTCTGAAAATAGATTGACTT+GGG | - | chr5.3:16680471-16680490 | None:intergenic | 30.0% |
| ! | GAAGGCTTTTATTAACCAAT+CGG | + | chr5.3:16679172-16679191 | MS.gene028066:intron | 30.0% |
| ! | GCAGATTTTACAACCAAAAT+TGG | - | chr5.3:16680325-16680344 | None:intergenic | 30.0% |
| ! | GTAAAGTCTATCTTGTTTCA+AGG | + | chr5.3:16679933-16679952 | MS.gene028066:CDS | 30.0% |
| ! | TCTCTGAAAATAGATTGACT+TGG | - | chr5.3:16680472-16680491 | None:intergenic | 30.0% |
| ! | TGATTGATATTCTTTTGAGC+TGG | - | chr5.3:16679971-16679990 | None:intergenic | 30.0% |
| !! | GAAGTGTTGAATTAACTGTA+TGG | + | chr5.3:16680239-16680258 | MS.gene028066:CDS | 30.0% |
| !! | TTCAGAGAATCATCTAGTTT+TGG | + | chr5.3:16680484-16680503 | MS.gene028066:CDS | 30.0% |
| !!! | AGCAGTTTTTTTTCTTCATC+AGG | + | chr5.3:16681234-16681253 | MS.gene028066:CDS | 30.0% |
| AAGGTTACCATTAATGGAGA+TGG | + | chr5.3:16680673-16680692 | MS.gene028066:CDS | 35.0% | |
| AATTCACAGTATTTGAACGG+TGG | + | chr5.3:16679437-16679456 | MS.gene028066:CDS | 35.0% | |
| ACGGAAATTGTAAATCTGCT+GGG | - | chr5.3:16680071-16680090 | None:intergenic | 35.0% | |
| ACTTCAATGGGAAGTCTATT+GGG | + | chr5.3:16680356-16680375 | MS.gene028066:CDS | 35.0% | |
| AGGTTACCATTAATGGAGAT+GGG | + | chr5.3:16680674-16680693 | MS.gene028066:CDS | 35.0% | |
| ATTTACAATTTCCGTCCCAT+TGG | + | chr5.3:16680076-16680095 | MS.gene028066:CDS | 35.0% | |
| ATTTGCAGAAATCATCCGTA+AGG | + | chr5.3:16680885-16680904 | MS.gene028066:CDS | 35.0% | |
| CATACTTTCAATGTCACCAA+TGG | - | chr5.3:16680095-16680114 | None:intergenic | 35.0% | |
| CCAGAGTAAATGACTTCAAT+GGG | + | chr5.3:16680344-16680363 | MS.gene028066:CDS | 35.0% | |
| CCAGAGTAAATGCTTTCAAT+GGG | + | chr5.3:16681460-16681479 | MS.gene028066:CDS | 35.0% | |
| CTGTTGATGCTTGTGATTAT+AGG | + | chr5.3:16680725-16680744 | MS.gene028066:CDS | 35.0% | |
| GCAAATCATTTGTCAATCAC+TGG | - | chr5.3:16679245-16679264 | None:intergenic | 35.0% | |
| GCAGATATTGGGATTATACT+TGG | - | chr5.3:16679722-16679741 | None:intergenic | 35.0% | |
| GTGTTGAATTAACTGTATGG+GGG | + | chr5.3:16680242-16680261 | MS.gene028066:CDS | 35.0% | |
| TATGCTGATAGGAATCATAG+GGG | + | chr5.3:16681533-16681552 | MS.gene028066:CDS | 35.0% | |
| TGATCTCTTGATCATTAGGA+AGG | - | chr5.3:16679994-16680013 | None:intergenic | 35.0% | |
| TGCAAAATATTTGCGACTCT+GGG | + | chr5.3:16680293-16680312 | MS.gene028066:CDS | 35.0% | |
| TTCCTATCTCCTATCATGAT+AGG | - | chr5.3:16680643-16680662 | None:intergenic | 35.0% | |
| TTTCTCATGATTGATGCTGT+AGG | - | chr5.3:16680166-16680185 | None:intergenic | 35.0% | |
| ! | AAAATACTTTTCCCTCACCT+CGG | - | chr5.3:16679823-16679842 | None:intergenic | 35.0% |
| ! | CATTGGTGACATTGAAAGTA+TGG | + | chr5.3:16680093-16680112 | MS.gene028066:CDS | 35.0% |
| ! | TTTGATCTTTTGGATTCGGA+CGG | + | chr5.3:16679845-16679864 | MS.gene028066:CDS | 35.0% |
| !! | CAGGTTGATTTCTAAGACTT+AGG | - | chr5.3:16681323-16681342 | None:intergenic | 35.0% |
| !! | GTTGATAGCAGAGTTAATAG+TGG | - | chr5.3:16681082-16681101 | None:intergenic | 35.0% |
| !! | GTTTTGGTAAAAGTGAAGTG+CGG | + | chr5.3:16680500-16680519 | MS.gene028066:CDS | 35.0% |
| AACTCTGCTATCAACACAAC+TGG | + | chr5.3:16681087-16681106 | MS.gene028066:CDS | 40.0% | |
| AACTGTAGTGAAAGCAGAGA+AGG | + | chr5.3:16680981-16681000 | MS.gene028066:CDS | 40.0% | |
| AATCAACCTGAACAGTCTGA+TGG | + | chr5.3:16681333-16681352 | MS.gene028066:CDS | 40.0% | |
| ACAGCTTGTCCTATCATGAT+AGG | + | chr5.3:16680631-16680650 | MS.gene028066:CDS | 40.0% | |
| AGGGTGATCTCTTGATCATT+AGG | - | chr5.3:16679998-16680017 | None:intergenic | 40.0% | |
| AGGTTCTACCAATAATTGGC+TGG | - | chr5.3:16680392-16680411 | None:intergenic | 40.0% | |
| ATAGGAATCATAGGGGGATT+TGG | + | chr5.3:16681540-16681559 | MS.gene028066:CDS | 40.0% | |
| ATCAACCTGAACAGTCTGAT+GGG | + | chr5.3:16681334-16681353 | MS.gene028066:CDS | 40.0% | |
| ATCATAGAACTGATCAGCCA+CGG | - | chr5.3:16679900-16679919 | None:intergenic | 40.0% | |
| ATCATTAATGCCAGCTGCAT+AGG | - | chr5.3:16679465-16679484 | None:intergenic | 40.0% | |
| ATGATCACACTGGAATGACT+TGG | + | chr5.3:16680770-16680789 | MS.gene028066:CDS | 40.0% | |
| ATGCAGATACATGATCACAC+TGG | + | chr5.3:16680760-16680779 | MS.gene028066:CDS | 40.0% | |
| ATGCTGATAGGAATCATAGG+GGG | + | chr5.3:16681534-16681553 | MS.gene028066:CDS | 40.0% | |
| ATGGCAGCATATTGGACATT+GGG | + | chr5.3:16681422-16681441 | MS.gene028066:CDS | 40.0% | |
| CCATTAATGGAGATGGGAAA+TGG | + | chr5.3:16680680-16680699 | MS.gene028066:CDS | 40.0% | |
| CCATTTCCCATCTCCATTAA+TGG | - | chr5.3:16680683-16680702 | None:intergenic | 40.0% | |
| CCCATTGAAGTCATTTACTC+TGG | - | chr5.3:16680347-16680366 | None:intergenic | 40.0% | |
| CGGAAATTGTAAATCTGCTG+GGG | - | chr5.3:16680070-16680089 | None:intergenic | 40.0% | |
| CTACATGACATGTATGAACC+AGG | - | chr5.3:16681264-16681283 | None:intergenic | 40.0% | |
| CTATTGGTGTACATAGGAGA+TGG | - | chr5.3:16679665-16679684 | None:intergenic | 40.0% | |
| CTGCAAAATATTTGCGACTC+TGG | + | chr5.3:16680292-16680311 | MS.gene028066:CDS | 40.0% | |
| CTTAAGTCTGAGAAAGCAGA+AGG | + | chr5.3:16681054-16681073 | MS.gene028066:CDS | 40.0% | |
| CTTGACAAATGGGACTTGAT+TGG | + | chr5.3:16679314-16679333 | MS.gene028066:CDS | 40.0% | |
| CTTTCAATGGGAAGTCTGTT+GGG | + | chr5.3:16681472-16681491 | MS.gene028066:CDS | 40.0% | |
| GAATAAACACAGCTAGCTGA+AGG | - | chr5.3:16679533-16679552 | None:intergenic | 40.0% | |
| GACGGAAATTGTAAATCTGC+TGG | - | chr5.3:16680072-16680091 | None:intergenic | 40.0% | |
| GACTTCAATGGGAAGTCTAT+TGG | + | chr5.3:16680355-16680374 | MS.gene028066:CDS | 40.0% | |
| GAGTTATCATCGTCAAGACA+TGG | - | chr5.3:16680043-16680062 | None:intergenic | 40.0% | |
| GCAAAATATTTGCGACTCTG+GGG | + | chr5.3:16680294-16680313 | MS.gene028066:CDS | 40.0% | |
| GCAAGATACAGTACATCTGA+TGG | + | chr5.3:16679569-16679588 | MS.gene028066:CDS | 40.0% | |
| GCACAGATAGATATCCAATC+AGG | - | chr5.3:16680574-16680593 | None:intergenic | 40.0% | |
| GCCAGAGTAAATGACTTCAA+TGG | + | chr5.3:16680343-16680362 | MS.gene028066:CDS | 40.0% | |
| GCCAGAGTAAATGCTTTCAA+TGG | + | chr5.3:16681459-16681478 | MS.gene028066:CDS | 40.0% | |
| GGTTCTCTATTGGTGTACAT+AGG | - | chr5.3:16679671-16679690 | None:intergenic | 40.0% | |
| GTAGTAAAACTTCCTCCGAT+TGG | - | chr5.3:16679190-16679209 | None:intergenic | 40.0% | |
| GTCCTATCATGATAGGAGAT+AGG | + | chr5.3:16680638-16680657 | MS.gene028066:CDS | 40.0% | |
| TACACCAATAGAGAACCTAC+AGG | + | chr5.3:16679674-16679693 | MS.gene028066:CDS | 40.0% | |
| TACATGTCATGTAGCAACTG+TGG | + | chr5.3:16681270-16681289 | MS.gene028066:CDS | 40.0% | |
| TATGGAAAGCAACAGCATTG+TGG | + | chr5.3:16680111-16680130 | MS.gene028066:CDS | 40.0% | |
| TCTTCCTGTAGGTTCTCTAT+TGG | - | chr5.3:16679681-16679700 | None:intergenic | 40.0% | |
| TGATCACACTGGAATGACTT+GGG | + | chr5.3:16680771-16680790 | MS.gene028066:CDS | 40.0% | |
| TGCGACACAAATATGCTGAT+AGG | + | chr5.3:16681522-16681541 | MS.gene028066:CDS | 40.0% | |
| TGCTATAGATGGCAGCATAT+TGG | + | chr5.3:16681414-16681433 | MS.gene028066:CDS | 40.0% | |
| TGGAGCCAATTTGAATAGAC+CGG | + | chr5.3:16679589-16679608 | MS.gene028066:CDS | 40.0% | |
| TTCTACCAATAATTGGCTGG+TGG | - | chr5.3:16680389-16680408 | None:intergenic | 40.0% | |
| TTTCAATGTCACCAATGGGA+CGG | - | chr5.3:16680090-16680109 | None:intergenic | 40.0% | |
| ! | AAAAGCACAAGAAGGTCATC+AGG | - | chr5.3:16681581-16681600 | None:intergenic | 40.0% |
| ! | AAATACTTTTCCCTCACCTC+GGG | - | chr5.3:16679822-16679841 | None:intergenic | 40.0% |
| ! | AGGCTTTTACACTGAGAGAA+TGG | + | chr5.3:16680422-16680441 | MS.gene028066:CDS | 40.0% |
| ! | ATGGGGGAGTTTTTGCAATA+CGG | + | chr5.3:16680258-16680277 | MS.gene028066:CDS | 40.0% |
| ! | GGCTTTTATTAACCAATCGG+AGG | + | chr5.3:16679175-16679194 | MS.gene028066:intron | 40.0% |
| ! | GTAAAAGCCTCTGGAAAATC+AGG | - | chr5.3:16680412-16680431 | None:intergenic | 40.0% |
| !! | ATCATAGGGGGATTTGGTTT+TGG | + | chr5.3:16681546-16681565 | MS.gene028066:CDS | 40.0% |
| !! | CCCATTGAAAGCATTTACTC+TGG | - | chr5.3:16681463-16681482 | None:intergenic | 40.0% |
| !! | TTGAAAGCATTTACTCTGGC+AGG | - | chr5.3:16681459-16681478 | None:intergenic | 40.0% |
| AAATGTGGCTGTGCCATCTA+TGG | + | chr5.3:16679490-16679509 | MS.gene028066:CDS | 45.0% | |
| ACTGAGAGAATGGTTTGACC+AGG | + | chr5.3:16680432-16680451 | MS.gene028066:CDS | 45.0% | |
| AGAGAATGGTTTGACCAGGA+AGG | + | chr5.3:16680436-16680455 | MS.gene028066:CDS | 45.0% | |
| ATAGATGGCACAGCCACATT+TGG | - | chr5.3:16679491-16679510 | None:intergenic | 45.0% | |
| ATGGGAAATGGCGTTGTGTA+AGG | + | chr5.3:16680692-16680711 | MS.gene028066:CDS | 45.0% | |
| ATGTCATGTAGCAACTGTGG+AGG | + | chr5.3:16681273-16681292 | MS.gene028066:CDS | 45.0% | |
| ATTCGGACGGTGGAGAAATA+CGG | + | chr5.3:16679858-16679877 | MS.gene028066:CDS | 45.0% | |
| ATTGGGATTATACTTGGGGC+TGG | - | chr5.3:16679716-16679735 | None:intergenic | 45.0% | |
| CAATAATTGGCTGGTGGCAA+TGG | - | chr5.3:16680383-16680402 | None:intergenic | 45.0% | |
| CAATCAGCTGCTGGTCAATT+AGG | + | chr5.3:16679401-16679420 | MS.gene028066:CDS | 45.0% | |
| CAATCTGATGTGAGTCATGC+AGG | + | chr5.3:16679371-16679390 | MS.gene028066:CDS | 45.0% | |
| CATTGCCACCAGCCAATTAT+TGG | + | chr5.3:16680381-16680400 | MS.gene028066:CDS | 45.0% | |
| CATTGTGGATGTGATTGCTG+TGG | + | chr5.3:16680126-16680145 | MS.gene028066:CDS | 45.0% | |
| CGAACATAAGACCCATTGAC+TGG | - | chr5.3:16679617-16679636 | None:intergenic | 45.0% | |
| CTAGCTGAAGGATTCACAGT+CGG | - | chr5.3:16679521-16679540 | None:intergenic | 45.0% | |
| CTATCAACACAACTGGACCA+GGG | + | chr5.3:16681094-16681113 | MS.gene028066:CDS | 45.0% | |
| CTCCAGTTGAAAGACATGTC+TGG | + | chr5.3:16680214-16680233 | MS.gene028066:CDS | 45.0% | |
| CTTGATTGGAAAACCTGTCC+CGG | + | chr5.3:16679328-16679347 | MS.gene028066:CDS | 45.0% | |
| GAGAATGGTTTGACCAGGAA+GGG | + | chr5.3:16680437-16680456 | MS.gene028066:CDS | 45.0% | |
| GATGGCAGCATATTGGACAT+TGG | + | chr5.3:16681421-16681440 | MS.gene028066:CDS | 45.0% | |
| GCAAATCAAGGGAGACAGTA+TGG | + | chr5.3:16681201-16681220 | MS.gene028066:CDS | 45.0% | |
| GCTTTCAATGGGAAGTCTGT+TGG | + | chr5.3:16681471-16681490 | MS.gene028066:CDS | 45.0% | |
| TATAACAATGCCCGAGGTGA+GGG | + | chr5.3:16679809-16679828 | MS.gene028066:CDS | 45.0% | |
| TCAACCTGAACAGTCTGATG+GGG | + | chr5.3:16681335-16681354 | MS.gene028066:CDS | 45.0% | |
| TCTCTCAGTGTAAAAGCCTC+TGG | - | chr5.3:16680421-16680440 | None:intergenic | 45.0% | |
| TGACTCACATCAGATTGTGC+AGG | - | chr5.3:16679368-16679387 | None:intergenic | 45.0% | |
| TGTACATAGGAGATGGCTGT+CGG | - | chr5.3:16679658-16679677 | None:intergenic | 45.0% | |
| TTCTCGCTTAGCCGTTATTC+TGG | - | chr5.3:16679780-16679799 | None:intergenic | 45.0% | |
| TTGGGATTATACTTGGGGCT+GGG | - | chr5.3:16679715-16679734 | None:intergenic | 45.0% | |
| TTTGTCAATCACTGGCACAG+AGG | - | chr5.3:16679237-16679256 | None:intergenic | 45.0% | |
| ! | GATTGTGCAGGTGCTTCTTT+TGG | - | chr5.3:16679356-16679375 | None:intergenic | 45.0% |
| ! | GGAGCATCATTTCTTCCTGT+AGG | - | chr5.3:16679692-16679711 | None:intergenic | 45.0% |
| ! | GGGAGTTTTTGCAATACGGA+AGG | + | chr5.3:16680262-16680281 | MS.gene028066:CDS | 45.0% |
| ! | GGTAGAACCTGATTTTCCAG+AGG | + | chr5.3:16680402-16680421 | MS.gene028066:CDS | 45.0% |
| ! | TTTTCTTCATCAGGTGCTCC+TGG | + | chr5.3:16681243-16681262 | MS.gene028066:CDS | 45.0% |
| !! | ACTGTCTCCCTTGATTTGCT+GGG | - | chr5.3:16681200-16681219 | None:intergenic | 45.0% |
| !! | GACTTGGGTTACTGCTTTTC+AGG | + | chr5.3:16680786-16680805 | MS.gene028066:CDS | 45.0% |
| !! | TACTGTCTCCCTTGATTTGC+TGG | - | chr5.3:16681201-16681220 | None:intergenic | 45.0% |
| !! | TGGCACCGGTCTATTCAAAT+TGG | - | chr5.3:16679597-16679616 | None:intergenic | 45.0% |
| !! | TGGGTTACTGCTTTTCAGGA+GGG | + | chr5.3:16680790-16680809 | MS.gene028066:CDS | 45.0% |
| !! | TTGGGTTACTGCTTTTCAGG+AGG | + | chr5.3:16680789-16680808 | MS.gene028066:CDS | 45.0% |
| !!! | CTCTGGGGCATTTCCAATTT+TGG | + | chr5.3:16680309-16680328 | MS.gene028066:CDS | 45.0% |
| AACCTGAACAGTCTGATGGG+GGG | + | chr5.3:16681337-16681356 | MS.gene028066:CDS | 50.0% | |
| AACGGCTAAGCGAGAACTCA+GGG | + | chr5.3:16679784-16679803 | MS.gene028066:CDS | 50.0% | |
| AATGGTTTGACCAGGAAGGG+AGG | + | chr5.3:16680440-16680459 | MS.gene028066:CDS | 50.0% | |
| ACAGTCGGACGATCCATAGA+TGG | - | chr5.3:16679506-16679525 | None:intergenic | 50.0% | |
| AGCACAAGAAGGTCATCAGG+AGG | - | chr5.3:16681578-16681597 | None:intergenic | 50.0% | |
| AGGGTCTATAACAATGCCCG+AGG | + | chr5.3:16679803-16679822 | MS.gene028066:CDS | 50.0% | |
| ATGGGACCCCAGCAAATCAA+GGG | + | chr5.3:16681190-16681209 | MS.gene028066:CDS | 50.0% | |
| CAACCTGAACAGTCTGATGG+GGG | + | chr5.3:16681336-16681355 | MS.gene028066:CDS | 50.0% | |
| CTATAACAATGCCCGAGGTG+AGG | + | chr5.3:16679808-16679827 | MS.gene028066:CDS | 50.0% | |
| GCTATCAACACAACTGGACC+AGG | + | chr5.3:16681093-16681112 | MS.gene028066:CDS | 50.0% | |
| GGAGATGTACAATCAGCTGC+TGG | + | chr5.3:16679392-16679411 | MS.gene028066:CDS | 50.0% | |
| GGCCAGACATGTCTTTCAAC+TGG | - | chr5.3:16680219-16680238 | None:intergenic | 50.0% | |
| TAACGGCTAAGCGAGAACTC+AGG | + | chr5.3:16679783-16679802 | MS.gene028066:CDS | 50.0% | |
| TATGGGACCCCAGCAAATCA+AGG | + | chr5.3:16681189-16681208 | MS.gene028066:CDS | 50.0% | |
| TGATCCAACAGACACCCTGT+TGG | - | chr5.3:16681370-16681389 | None:intergenic | 50.0% | |
| TGGGATTATACTTGGGGCTG+GGG | - | chr5.3:16679714-16679733 | None:intergenic | 50.0% | |
| TGTTGGATCAGGTGGTGCTT+CGG | + | chr5.3:16681380-16681399 | MS.gene028066:CDS | 50.0% | |
| TTCGGACGGTGGAGAAATAC+GGG | + | chr5.3:16679859-16679878 | MS.gene028066:CDS | 50.0% | |
| ! | AACAGGGTGTCTGTTGGATC+AGG | + | chr5.3:16681369-16681388 | MS.gene028066:CDS | 50.0% |
| ! | AATAGACCGGTGCCAGTCAA+TGG | + | chr5.3:16679602-16679621 | MS.gene028066:CDS | 50.0% |
| ! | ATAGACCGGTGCCAGTCAAT+GGG | + | chr5.3:16679603-16679622 | MS.gene028066:CDS | 50.0% |
| ! | GATCTTTTGGATTCGGACGG+TGG | + | chr5.3:16679848-16679867 | MS.gene028066:CDS | 50.0% |
| ! | GGACTTCTGAGAAGCCTGAT+TGG | + | chr5.3:16680557-16680576 | MS.gene028066:CDS | 50.0% |
| ! | GGCAACTTGCTTTAATGCCG+TGG | + | chr5.3:16679880-16679899 | MS.gene028066:CDS | 50.0% |
| ! | TAAGACCCATTGACTGGCAC+CGG | - | chr5.3:16679611-16679630 | None:intergenic | 50.0% |
| !! | CTGTCTCCCTTGATTTGCTG+GGG | - | chr5.3:16681199-16681218 | None:intergenic | 50.0% |
| !! | GTTACTGCTTTTCAGGAGGG+TGG | + | chr5.3:16680793-16680812 | MS.gene028066:CDS | 50.0% |
| AACGGTGGTTCCTATGCAGC+TGG | + | chr5.3:16679452-16679471 | MS.gene028066:CDS | 55.0% | |
| ACCTGAACAGTCTGATGGGG+GGG | + | chr5.3:16681338-16681357 | MS.gene028066:CDS | 55.0% | |
| CAGGTGGTGCTTCGGGTAAT+TGG | + | chr5.3:16681388-16681407 | MS.gene028066:CDS | 55.0% | |
| GAGGGTGGCGAGATCATCAT+GGG | + | chr5.3:16680808-16680827 | MS.gene028066:CDS | 55.0% | |
| GGAGATGGCTGTCGGTACAT+AGG | - | chr5.3:16679650-16679669 | None:intergenic | 55.0% | |
| GGGATTATACTTGGGGCTGG+GGG | - | chr5.3:16679713-16679732 | None:intergenic | 55.0% | |
| GTTGGATCAGGTGGTGCTTC+GGG | + | chr5.3:16681381-16681400 | MS.gene028066:CDS | 55.0% | |
| TGTAGCAACTGTGGAGGCTC+TGG | + | chr5.3:16681279-16681298 | MS.gene028066:CDS | 55.0% | |
| TGTCGGTACATAGGCTGAGG+AGG | - | chr5.3:16679641-16679660 | None:intergenic | 55.0% | |
| TTGGGACATTCCTCCCTTCC+TGG | - | chr5.3:16680453-16680472 | None:intergenic | 55.0% | |
| ! | AGGGTGTCTGTTGGATCAGG+TGG | + | chr5.3:16681372-16681391 | MS.gene028066:CDS | 55.0% |
| ! | GCGTAGCTTGTCCACTTGGA+AGG | - | chr5.3:16681122-16681141 | None:intergenic | 55.0% |
| ! | TACGCCAACAGGGTGTCTGT+TGG | + | chr5.3:16681363-16681382 | MS.gene028066:CDS | 55.0% |
| !! | GCAGGTGCTTCTTTTGGTGC+CGG | - | chr5.3:16679350-16679369 | None:intergenic | 55.0% |
| !!! | CAGGTGCTTCTTTTGGTGCC+GGG | - | chr5.3:16679349-16679368 | None:intergenic | 55.0% |
| ACCCCCCCATCAGACTGTTC+AGG | - | chr5.3:16681342-16681361 | None:intergenic | 60.0% | |
| GGAGGGTGGCGAGATCATCA+TGG | + | chr5.3:16680807-16680826 | MS.gene028066:CDS | 60.0% | |
| GGCTGTCGGTACATAGGCTG+AGG | - | chr5.3:16679644-16679663 | None:intergenic | 60.0% | |
| ! | GGTGGCGTAGCTTGTCCACT+TGG | - | chr5.3:16681126-16681145 | None:intergenic | 60.0% |
| !! | TGTCCACTTGGAAGGCACCC+TGG | - | chr5.3:16681114-16681133 | None:intergenic | 60.0% |
| !!! | GCTTCTTTTGGTGCCGGGAC+AGG | - | chr5.3:16679344-16679363 | None:intergenic | 60.0% |
| ATGGGGGGGTCTACGCCAAC+AGG | + | chr5.3:16681352-16681371 | MS.gene028066:CDS | 65.0% | |
| TGGGGGGGTCTACGCCAACA+GGG | + | chr5.3:16681353-16681372 | MS.gene028066:CDS | 65.0% | |
| ! | GGACCAGGGTGCCTTCCAAG+TGG | + | chr5.3:16681108-16681127 | MS.gene028066:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 16679087 | 16681605 | 16679087 | ID=MS.gene028066 |
| chr5.3 | mRNA | 16679087 | 16681605 | 16679087 | ID=MS.gene028066.t1;Parent=MS.gene028066 |
| chr5.3 | exon | 16679087 | 16679089 | 16679087 | ID=MS.gene028066.t1.exon1;Parent=MS.gene028066.t1 |
| chr5.3 | CDS | 16679087 | 16679089 | 16679087 | ID=cds.MS.gene028066.t1;Parent=MS.gene028066.t1 |
| chr5.3 | exon | 16679302 | 16681605 | 16679302 | ID=MS.gene028066.t1.exon2;Parent=MS.gene028066.t1 |
| chr5.3 | CDS | 16679302 | 16681605 | 16679302 | ID=cds.MS.gene028066.t1;Parent=MS.gene028066.t1 |
| Gene Sequence |
| Protein sequence |
