AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044021

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044021.t1 MTR_1g019770 96.419 363 11 1 1 363 1 361 0.0 722
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044021.t1 AT2G37560 66.762 349 110 2 21 363 14 362 7.58e-174 488
MS.gene044021.t1 AT2G37560 64.535 344 108 2 21 363 14 344 6.94e-171 480

Find 66 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAACATGAAAAGGAAAT+TGG 0.153499 1.2:+3880242 MS.gene044021:CDS
TATTCTGTAGTTGTCATTAA+TGG 0.190748 1.2:+3881413 MS.gene044021:CDS
AACATGCCTTCAATCTTATA+TGG 0.207992 1.2:-3882841 None:intergenic
TAGAAGCAACAATGCGAATA+TGG 0.224039 1.2:-3881849 None:intergenic
GGCAGTTTGGGACAAGAATA+TGG 0.298608 1.2:+3882771 MS.gene044021:intron
ATATTGATGGACCAGGATTA+AGG 0.310552 1.2:+3881782 MS.gene044021:CDS
ATTCTGTCAAATGAGAATTC+AGG 0.313525 1.2:-3883146 None:intergenic
AGATGAATGACAACGAGAAT+TGG 0.316812 1.2:+3879970 None:intergenic
GATATCAGTAATCTTGTGTT+TGG 0.329500 1.2:-3880084 None:intergenic
CTTAGGGAGAGAAGCCATTC+AGG 0.346202 1.2:-3880296 None:intergenic
GACATCCAGTACTCAATCTA+TGG 0.352364 1.2:+3881687 MS.gene044021:CDS
ATTCTGTAGTTGTCATTAAT+GGG 0.355542 1.2:+3881414 MS.gene044021:CDS
GTAGTCATTCACAATATTGA+TGG 0.374954 1.2:+3881769 MS.gene044021:CDS
GCTCTTCTGATGTATGGCTT+TGG 0.376226 1.2:+3881341 MS.gene044021:CDS
GGCTTCGCTCTTCTGATGTA+TGG 0.398018 1.2:+3881335 MS.gene044021:CDS
ACATGCCTTCAATCTTATAT+GGG 0.410899 1.2:-3882840 None:intergenic
TCAGACCATTAACTTAAAAC+AGG 0.411589 1.2:+3881442 MS.gene044021:CDS
GATGAATGACAACGAGAATT+GGG 0.411650 1.2:+3879971 None:intergenic
TTGAATACACTCTGGGCATT+GGG 0.413303 1.2:-3882940 None:intergenic
TGAAGTGCTTCGGTTGTAAG+AGG 0.426284 1.2:-3883231 None:intergenic
TTTGAATACACTCTGGGCAT+TGG 0.433936 1.2:-3882941 None:intergenic
TTCTGTCAAATGAGAATTCA+GGG 0.434196 1.2:-3883145 None:intergenic
AAACTTGCCTTCATCAGGAT+TGG 0.435844 1.2:-3882986 None:intergenic
CTAAACATGAAAAGGAAATT+GGG 0.440776 1.2:+3880243 MS.gene044021:CDS
TAGAACTTTCTGAAGTGCTT+CGG 0.446345 1.2:-3883241 None:intergenic
TGGCTCACACGCAGTTCAAT+TGG 0.450408 1.2:+3882791 MS.gene044021:CDS
TATTGATGGACCAGGATTAA+GGG 0.455380 1.2:+3881783 MS.gene044021:CDS
TTTGCCCCATATAAGATTGA+AGG 0.461148 1.2:+3882835 MS.gene044021:CDS
GTTTCAGAGTCCCTTAATCC+TGG 0.463196 1.2:-3881793 None:intergenic
TATTCAACCTAAACATGAAA+AGG 0.467955 1.2:+3880235 MS.gene044021:CDS
CAGTCGAGCAAGATAGTGTT+GGG 0.477731 1.2:-3881815 None:intergenic
TTGACCATCGGAATGCCTCT+TGG 0.480687 1.2:-3883193 None:intergenic
AGAAGCAACAATGCGAATAT+GGG 0.481183 1.2:-3881848 None:intergenic
TATCGATGTTGTTGATGAAC+AGG 0.486845 1.2:+3880103 MS.gene044021:CDS
ATCTTATATGGGGCAAATGT+AGG 0.486995 1.2:-3882829 None:intergenic
CTTGTGTTTGGATTTCTTCA+CGG 0.487363 1.2:-3880072 None:intergenic
CAAATTTCCAATCCTGATGA+AGG 0.491913 1.2:+3882979 MS.gene044021:CDS
GGGTAACCTGGCTGCTAACA+AGG 0.495589 1.2:-3883125 None:intergenic
GTATGGCTTTGGATCTAAGA+AGG 0.495801 1.2:+3881352 MS.gene044021:CDS
AGTACTGGATGTCTGCCGGC+TGG 0.514722 1.2:-3881677 None:intergenic
ACGTTTCCTTGTTAGCAGCC+AGG 0.517589 1.2:+3883119 MS.gene044021:CDS
CTGAATGGCTTCTCTCCCTA+AGG 0.525332 1.2:+3880297 MS.gene044021:CDS
ATCTTCCATAGATTGAGTAC+TGG 0.527353 1.2:-3881692 None:intergenic
CAAGAACTTTGAATACACTC+TGG 0.530976 1.2:-3882948 None:intergenic
TGCTAACAAGGAAACGTTCA+CGG 0.541569 1.2:-3883113 None:intergenic
CCAACACTATCTTGCTCGAC+TGG 0.549634 1.2:+3881816 MS.gene044021:CDS
AATGAGAATTCAGGGTAACC+TGG 0.552341 1.2:-3883137 None:intergenic
ACACGCAGTTCAATTGGTGC+TGG 0.559239 1.2:+3882797 MS.gene044021:CDS
CCAGTCGAGCAAGATAGTGT+TGG 0.568472 1.2:-3881816 None:intergenic
ATTGAGTACTGGATGTCTGC+CGG 0.580064 1.2:-3881681 None:intergenic
GAAGTGCTTCGGTTGTAAGA+GGG 0.591394 1.2:-3883230 None:intergenic
ATTCACAATATTGATGGACC+AGG 0.597689 1.2:+3881775 MS.gene044021:CDS
ATGCTGCTATGTATCCTGAA+TGG 0.598898 1.2:+3880282 MS.gene044021:CDS
AAGAACTTTGAATACACTCT+GGG 0.606048 1.2:-3882947 None:intergenic
AGAATTTAAAGACCATGAGC+TGG 0.613367 1.2:+3883164 MS.gene044021:CDS
CATGCCTTCAATCTTATATG+GGG 0.613591 1.2:-3882839 None:intergenic
CTGCCGTGTGCAAGAATCAG+AGG 0.614174 1.2:-3882868 None:intergenic
GTGCAAGCAATCTTGACCAT+CGG 0.614626 1.2:-3883205 None:intergenic
TTTAGGTTGAATATGCAATG+AGG 0.624337 1.2:-3880225 None:intergenic
ACTGAGTAGAGGTCACTGAT+CGG 0.640537 1.2:-3883087 None:intergenic
CTAAACGCAAGGTTTCCAGC+CGG 0.643818 1.2:+3881662 MS.gene044021:CDS
TATCCTCTGATTCTTGCACA+CGG 0.655621 1.2:+3882865 MS.gene044021:CDS
AAAACCAAGAGGCATTCCGA+TGG 0.661202 1.2:+3883189 MS.gene044021:CDS
TCAAGTGAAAGCTAAACGCA+AGG 0.668907 1.2:+3881651 MS.gene044021:CDS
ATGAGCTGGTCAAAACCAAG+AGG 0.715068 1.2:+3883178 MS.gene044021:CDS
GTTCACGGCAGACTGAGTAG+AGG 0.732037 1.2:-3883098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTTTTTAACATATT+AGG + chr1.2:3881597-3881616 MS.gene044021:intron 10.0%
!! CTTAAATTTGAATTGTAAAT+AGG + chr1.2:3882076-3882095 MS.gene044021:intron 15.0%
!! TTAAACAGATATAAAAACAT+AGG - chr1.2:3882238-3882257 None:intergenic 15.0%
!! TTCAATAAAATGTTTCAAAA+AGG - chr1.2:3882182-3882201 None:intergenic 15.0%
!!! TTTGATCAATTCTTATTTTT+TGG - chr1.2:3882499-3882518 None:intergenic 15.0%
!!! TTTTATTATGCAAAGAATTA+GGG - chr1.2:3880840-3880859 None:intergenic 15.0%
!!! TTTTTATTATGCAAAGAATT+AGG - chr1.2:3880841-3880860 None:intergenic 15.0%
!! AATATTAACTAAACTTACAC+AGG - chr1.2:3881894-3881913 None:intergenic 20.0%
!! AATGTAATGTGATTTATGTT+TGG + chr1.2:3880465-3880484 MS.gene044021:intron 20.0%
!! ATATTAACTAAACTTACACA+GGG - chr1.2:3881893-3881912 None:intergenic 20.0%
!! CAAAACTATTAAAAATGACT+AGG + chr1.2:3882570-3882589 MS.gene044021:intron 20.0%
!! TGTACTTAAAATAGCTTATT+TGG - chr1.2:3881171-3881190 None:intergenic 20.0%
!!! AGAATTGATTTTGACATATT+TGG - chr1.2:3880592-3880611 None:intergenic 20.0%
!!! ATTGTGTAATATTTTTTGCA+AGG - chr1.2:3881130-3881149 None:intergenic 20.0%
!!! ATTGTTTTATTATCATCTGT+TGG + chr1.2:3882036-3882055 MS.gene044021:intron 20.0%
!!! CAAGTTTTTATCATTTTACT+TGG + chr1.2:3883002-3883021 MS.gene044021:intron 20.0%
!!! GATTTTGTAAAATTGATTCT+GGG + chr1.2:3880429-3880448 MS.gene044021:intron 20.0%
!!! TGATTTTGTAAAATTGATTC+TGG + chr1.2:3880428-3880447 MS.gene044021:intron 20.0%
!!! TTAGTGTTGATAGAATATAA+TGG + chr1.2:3882620-3882639 MS.gene044021:intron 20.0%
!!! TTGTGTAATATTTTTTGCAA+GGG - chr1.2:3881129-3881148 None:intergenic 20.0%
!!! TTTTGATTTTGTATGTGATT+AGG + chr1.2:3880190-3880209 MS.gene044021:intron 20.0%
! AAAAATGACTAGGATCTAAA+TGG + chr1.2:3882580-3882599 MS.gene044021:intron 25.0%
! AACATGTAATTATAGCTCTT+TGG + chr1.2:3881499-3881518 MS.gene044021:intron 25.0%
! AACTCATATTCGCTTATAAT+TGG + chr1.2:3880739-3880758 MS.gene044021:intron 25.0%
! AAGTATATGCGACTATATAA+AGG + chr1.2:3882702-3882721 MS.gene044021:intron 25.0%
! ACTCATATTCGCTTATAATT+GGG + chr1.2:3880740-3880759 MS.gene044021:intron 25.0%
! ATTCTGTAGTTGTCATTAAT+GGG + chr1.2:3881414-3881433 MS.gene044021:CDS 25.0%
! CTAAACATGAAAAGGAAATT+GGG + chr1.2:3880243-3880262 MS.gene044021:CDS 25.0%
! GATAAACATAGGATTTGAAA+TGG + chr1.2:3880986-3881005 MS.gene044021:intron 25.0%
! TATTAACTAAACTTACACAG+GGG - chr1.2:3881892-3881911 None:intergenic 25.0%
! TATTCAACCTAAACATGAAA+AGG + chr1.2:3880235-3880254 MS.gene044021:CDS 25.0%
! TATTCTGTAGTTGTCATTAA+TGG + chr1.2:3881413-3881432 MS.gene044021:CDS 25.0%
! TGGCATCATTTAATCTATTT+AGG + chr1.2:3882640-3882659 MS.gene044021:intron 25.0%
! TTCAAATCCTATGTTTATCA+TGG - chr1.2:3880985-3881004 None:intergenic 25.0%
!! ATGCTGTTCTTTTCATATAT+AGG + chr1.2:3883032-3883051 MS.gene044021:intron 25.0%
!! TCTTACATTTTTGTATGAAG+TGG + chr1.2:3881717-3881736 MS.gene044021:CDS 25.0%
!!! AAGAAACTATTTTCTAGCAA+AGG + chr1.2:3880037-3880056 MS.gene044021:CDS 25.0%
!!! ACAAACCTGTTTTAAGTTAA+TGG - chr1.2:3881450-3881469 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr1.2:3880519-3880538 None:intergenic 25.0%
!!! GTTCTAAAGTAAGAAGATAA+AGG - chr1.2:3880939-3880958 None:intergenic 25.0%
!!! GTTTGCTTGAATTTTTTTTC+AGG + chr1.2:3882008-3882027 MS.gene044021:intron 25.0%
!!! TCAAAAAGGCTTTATACTTT+TGG - chr1.2:3882168-3882187 None:intergenic 25.0%
!!! TGCATTTTTAAGTTTTACGT+TGG + chr1.2:3881272-3881291 MS.gene044021:intron 25.0%
!!! TTATCTTCTTACTTTAGAAC+CGG + chr1.2:3880939-3880958 MS.gene044021:intron 25.0%
AACATGCCTTCAATCTTATA+TGG - chr1.2:3882844-3882863 None:intergenic 30.0%
AAGAACTTTGAATACACTCT+GGG - chr1.2:3882950-3882969 None:intergenic 30.0%
AAGTATGTTATGTGTGTGTT+TGG + chr1.2:3880387-3880406 MS.gene044021:intron 30.0%
AATAGTTAGAATAGCAAGTC+CGG - chr1.2:3880961-3880980 None:intergenic 30.0%
ACATGCCTTCAATCTTATAT+GGG - chr1.2:3882843-3882862 None:intergenic 30.0%
ACTATTGCCATGATAAACAT+AGG + chr1.2:3880975-3880994 MS.gene044021:intron 30.0%
ATAGCACATACTTCATACTT+CGG - chr1.2:3881036-3881055 None:intergenic 30.0%
ATTCTATCAACACTAAGTCT+TGG - chr1.2:3882616-3882635 None:intergenic 30.0%
ATTCTGTCAAATGAGAATTC+AGG - chr1.2:3883149-3883168 None:intergenic 30.0%
CCTAAACATGAAAAGGAAAT+TGG + chr1.2:3880242-3880261 MS.gene044021:CDS 30.0%
CTGATCGTATTAGAGAAATT+AGG + chr1.2:3882405-3882424 MS.gene044021:intron 30.0%
GACTACACTAACAATTTACA+AGG - chr1.2:3881944-3881963 None:intergenic 30.0%
GATATCAGTAATCTTGTGTT+TGG - chr1.2:3880087-3880106 None:intergenic 30.0%
GGCTCATTAAAAAAAAGTGA+AGG - chr1.2:3881309-3881328 None:intergenic 30.0%
GTAGTCATTCACAATATTGA+TGG + chr1.2:3881769-3881788 MS.gene044021:CDS 30.0%
GTGAAAAGTTAAGGCAAAAA+TGG + chr1.2:3881524-3881543 MS.gene044021:intron 30.0%
TATCTGTTTAACCAGACAAT+AGG + chr1.2:3882247-3882266 MS.gene044021:intron 30.0%
TCAGACCATTAACTTAAAAC+AGG + chr1.2:3881442-3881461 MS.gene044021:CDS 30.0%
TGCCATATTTCATCATCTTT+AGG + chr1.2:3881969-3881988 MS.gene044021:intron 30.0%
TGCCTAAAGATGATGAAATA+TGG - chr1.2:3881974-3881993 None:intergenic 30.0%
TGGATGGAAAATGAAATCAA+AGG + chr1.2:3881006-3881025 MS.gene044021:intron 30.0%
TGGTTCTTCAACTTTCTAAA+AGG - chr1.2:3882288-3882307 None:intergenic 30.0%
TTAAACAAACACTGCATCTT+TGG - chr1.2:3880654-3880673 None:intergenic 30.0%
TTAACAGTTACATCTTCTGT+TGG + chr1.2:3882750-3882769 MS.gene044021:intron 30.0%
TTCTGTCAAATGAGAATTCA+GGG - chr1.2:3883148-3883167 None:intergenic 30.0%
! AACATAGGATTTGAAATGGA+TGG + chr1.2:3880990-3881009 MS.gene044021:intron 30.0%
! CCAATTTCCTTTTCATGTTT+AGG - chr1.2:3880245-3880264 None:intergenic 30.0%
! CTCAAGAACAAGAAAAGTTT+TGG - chr1.2:3882308-3882327 None:intergenic 30.0%
! GCTATAATTACATGTTTCTG+TGG - chr1.2:3881495-3881514 None:intergenic 30.0%
! GGTTCTTCAACTTTCTAAAA+GGG - chr1.2:3882287-3882306 None:intergenic 30.0%
! GTGCATAAGACAAAACTTTT+TGG - chr1.2:3880681-3880700 None:intergenic 30.0%
!! ATCTGTTGGAGGTTTATTTT+GGG + chr1.2:3882050-3882069 MS.gene044021:intron 30.0%
!! GTTTTATTATCATCTGTTGG+AGG + chr1.2:3882039-3882058 MS.gene044021:intron 30.0%
!! TCTTTGGTAGTGAAAAGTTA+AGG + chr1.2:3881515-3881534 MS.gene044021:intron 30.0%
!! TTTAGGTTGAATATGCAATG+AGG - chr1.2:3880228-3880247 None:intergenic 30.0%
!!! GCTTGAATTTTTTTTCAGGT+TGG + chr1.2:3882012-3882031 MS.gene044021:intron 30.0%
!!! TTTTTTTAATGAGCCAGATG+CGG + chr1.2:3881314-3881333 MS.gene044021:intron 30.0%
AAATGACTCTTGTTGCAGTA+GGG + chr1.2:3882670-3882689 MS.gene044021:intron 35.0%
AACTGTTAAGCAACTAGAAG+AGG - chr1.2:3882739-3882758 None:intergenic 35.0%
ACAGATGAATGTCTTAGTGA+AGG + chr1.2:3881549-3881568 MS.gene044021:intron 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG + chr1.2:3879995-3880014 MS.gene044021:CDS 35.0%
AGAAGCAACAATGCGAATAT+GGG - chr1.2:3881851-3881870 None:intergenic 35.0%
AGAATTTAAAGACCATGAGC+TGG + chr1.2:3883164-3883183 MS.gene044021:CDS 35.0%
ATCATTGACGTAGGCATAAT+TGG + chr1.2:3880880-3880899 MS.gene044021:intron 35.0%
ATCTTATATGGGGCAAATGT+AGG - chr1.2:3882832-3882851 None:intergenic 35.0%
ATCTTCCATAGATTGAGTAC+TGG - chr1.2:3881695-3881714 None:intergenic 35.0%
CAAATTTCCAATCCTGATGA+AGG + chr1.2:3882979-3882998 MS.gene044021:CDS 35.0%
CAAGAACTTTGAATACACTC+TGG - chr1.2:3882951-3882970 None:intergenic 35.0%
CATGACTAATCGTTATGTTC+TGG + chr1.2:3880911-3880930 MS.gene044021:intron 35.0%
CATGCCTTCAATCTTATATG+GGG - chr1.2:3882842-3882861 None:intergenic 35.0%
CGTATTAGAGAAATTAGGAG+CGG + chr1.2:3882410-3882429 MS.gene044021:intron 35.0%
CTTGTGTTTGGATTTCTTCA+CGG - chr1.2:3880075-3880094 None:intergenic 35.0%
GAAAAGAGAGTGATACCTTA+GGG - chr1.2:3880315-3880334 None:intergenic 35.0%
GATAAAAACTTGCCTTCATC+AGG - chr1.2:3882994-3883013 None:intergenic 35.0%
GTGACATCTGTAAGATAGTT+TGG + chr1.2:3882457-3882476 MS.gene044021:intron 35.0%
TAGAAGCAACAATGCGAATA+TGG - chr1.2:3881852-3881871 None:intergenic 35.0%
TATGTGTGTGTTTGGTTATG+CGG + chr1.2:3880395-3880414 MS.gene044021:intron 35.0%
TCCTACAAACGACTATAAAG+CGG - chr1.2:3882364-3882383 None:intergenic 35.0%
TCTTATACATCTGATTGTGC+AGG - chr1.2:3882532-3882551 None:intergenic 35.0%
TGAAAAGAGAGTGATACCTT+AGG - chr1.2:3880316-3880335 None:intergenic 35.0%
TTTGCCCCATATAAGATTGA+AGG + chr1.2:3882835-3882854 MS.gene044021:CDS 35.0%
! ATATTGATGGACCAGGATTA+AGG + chr1.2:3881782-3881801 MS.gene044021:CDS 35.0%
! ATTCACAATATTGATGGACC+AGG + chr1.2:3881775-3881794 MS.gene044021:CDS 35.0%
! CATCTGTTGGAGGTTTATTT+TGG + chr1.2:3882049-3882068 MS.gene044021:intron 35.0%
! GTATGTATCTAGAGTGTGTT+TGG + chr1.2:3880358-3880377 MS.gene044021:intron 35.0%
! TATCGATGTTGTTGATGAAC+AGG + chr1.2:3880103-3880122 MS.gene044021:CDS 35.0%
! TATTGATGGACCAGGATTAA+GGG + chr1.2:3881783-3881802 MS.gene044021:CDS 35.0%
!! GCAAGTTGATAAAGTTGAGA+TGG + chr1.2:3880779-3880798 MS.gene044021:intron 35.0%
!! TAGAACTTTCTGAAGTGCTT+CGG - chr1.2:3883244-3883263 None:intergenic 35.0%
!! TTCGCTTGCAGAATTGATTT+TGG - chr1.2:3880548-3880567 None:intergenic 35.0%
!! TTTGTTTGATTTGTGCTCTG+AGG + chr1.2:3882205-3882224 MS.gene044021:intron 35.0%
!!! AATTTTGACTCCTCCAAAAG+TGG + chr1.2:3880626-3880645 MS.gene044021:intron 35.0%
AAACTTGCCTTCATCAGGAT+TGG - chr1.2:3882989-3883008 None:intergenic 40.0%
AACCAGACAATAGGACTTAC+TGG + chr1.2:3882256-3882275 MS.gene044021:intron 40.0%
AACTTAGAGCATAGCACACT+CGG - chr1.2:3881578-3881597 None:intergenic 40.0%
AATGAGAATTCAGGGTAACC+TGG - chr1.2:3883140-3883159 None:intergenic 40.0%
ACAAACGACTATAAAGCGGA+AGG - chr1.2:3882360-3882379 None:intergenic 40.0%
ACATCTTCTGTTGGCAGTTT+GGG + chr1.2:3882759-3882778 MS.gene044021:intron 40.0%
AGCAGTCTTCATAAGCTATC+TGG + chr1.2:3881059-3881078 MS.gene044021:intron 40.0%
ATCAACACTAAGTCTTGGAC+AGG - chr1.2:3882611-3882630 None:intergenic 40.0%
ATGCTGCTATGTATCCTGAA+TGG + chr1.2:3880282-3880301 MS.gene044021:CDS 40.0%
CAAACGACTATAAAGCGGAA+GGG - chr1.2:3882359-3882378 None:intergenic 40.0%
CTACGTCAATGATAGCAAAG+TGG - chr1.2:3880873-3880892 None:intergenic 40.0%
CTGTGGAATGCAAGATGTTA+GGG - chr1.2:3881478-3881497 None:intergenic 40.0%
GAAATGACTCTTGTTGCAGT+AGG + chr1.2:3882669-3882688 MS.gene044021:intron 40.0%
GACATCCAGTACTCAATCTA+TGG + chr1.2:3881687-3881706 MS.gene044021:CDS 40.0%
GCAGTCTTCATAAGCTATCT+GGG + chr1.2:3881060-3881079 MS.gene044021:intron 40.0%
TACATCTTCTGTTGGCAGTT+TGG + chr1.2:3882758-3882777 MS.gene044021:intron 40.0%
TATCAACTTGCAACGCTAGA+GGG - chr1.2:3880770-3880789 None:intergenic 40.0%
TATCCTCTGATTCTTGCACA+CGG + chr1.2:3882865-3882884 MS.gene044021:CDS 40.0%
TCAAGTGAAAGCTAAACGCA+AGG + chr1.2:3881651-3881670 MS.gene044021:CDS 40.0%
TCCGCTTTATAGTCGTTTGT+AGG + chr1.2:3882360-3882379 MS.gene044021:intron 40.0%
TCTGTGGAATGCAAGATGTT+AGG - chr1.2:3881479-3881498 None:intergenic 40.0%
TGCTAACAAGGAAACGTTCA+CGG - chr1.2:3883116-3883135 None:intergenic 40.0%
TGGGAGGGAAAAATACAGTT+AGG - chr1.2:3883061-3883080 None:intergenic 40.0%
TGTGGAATGCAAGATGTTAG+GGG - chr1.2:3881477-3881496 None:intergenic 40.0%
TTATCAACTTGCAACGCTAG+AGG - chr1.2:3880771-3880790 None:intergenic 40.0%
TTGAATACACTCTGGGCATT+GGG - chr1.2:3882943-3882962 None:intergenic 40.0%
TTTGAATACACTCTGGGCAT+TGG - chr1.2:3882944-3882963 None:intergenic 40.0%
! CACTTTGCTATCATTGACGT+AGG + chr1.2:3880871-3880890 MS.gene044021:intron 40.0%
! TAACTGTATTTTTCCCTCCC+AGG + chr1.2:3883060-3883079 MS.gene044021:intron 40.0%
!! ATCTTTGGTTCCACTTTTGG+AGG - chr1.2:3880639-3880658 None:intergenic 40.0%
!! GCTTGCAGAATTGATTTTGG+AGG - chr1.2:3880545-3880564 None:intergenic 40.0%
!! GTATGGCTTTGGATCTAAGA+AGG + chr1.2:3881352-3881371 MS.gene044021:CDS 40.0%
!! TGCATCTTTGGTTCCACTTT+TGG - chr1.2:3880642-3880661 None:intergenic 40.0%
!!! TTGCAGCTGTTTTGACACTT+TGG - chr1.2:3882900-3882919 None:intergenic 40.0%
ACTGAGTAGAGGTCACTGAT+CGG - chr1.2:3883090-3883109 None:intergenic 45.0%
ACTTAGAGCATAGCACACTC+GGG - chr1.2:3881577-3881596 None:intergenic 45.0%
ATGAGCTGGTCAAAACCAAG+AGG + chr1.2:3883178-3883197 MS.gene044021:CDS 45.0%
CAGTCGAGCAAGATAGTGTT+GGG - chr1.2:3881818-3881837 None:intergenic 45.0%
CGGCACATATTGAGCAAAAG+TGG + chr1.2:3882430-3882449 MS.gene044021:intron 45.0%
GCTCTTCTGATGTATGGCTT+TGG + chr1.2:3881341-3881360 MS.gene044021:CDS 45.0%
GTGCAAGCAATCTTGACCAT+CGG - chr1.2:3883208-3883227 None:intergenic 45.0%
GTTTCAGAGTCCCTTAATCC+TGG - chr1.2:3881796-3881815 None:intergenic 45.0%
TGCCAGTAAGTCCTATTGTC+TGG - chr1.2:3882261-3882280 None:intergenic 45.0%
! GAAGTGCTTCGGTTGTAAGA+GGG - chr1.2:3883233-3883252 None:intergenic 45.0%
! GGCAGTTTGGGACAAGAATA+TGG + chr1.2:3882771-3882790 MS.gene044021:intron 45.0%
! TGAAGTGCTTCGGTTGTAAG+AGG - chr1.2:3883234-3883253 None:intergenic 45.0%
!! AAAACCAAGAGGCATTCCGA+TGG + chr1.2:3883189-3883208 MS.gene044021:CDS 45.0%
!! ATTGAGTACTGGATGTCTGC+CGG - chr1.2:3881684-3881703 None:intergenic 45.0%
!!! AGCTGTTTTGACACTTTGGC+TGG - chr1.2:3882896-3882915 None:intergenic 45.0%
!!! TCTTGGTTTTGACCAGCTCA+TGG - chr1.2:3883179-3883198 None:intergenic 45.0%
ACACGCAGTTCAATTGGTGC+TGG + chr1.2:3882797-3882816 MS.gene044021:CDS 50.0%
ACGTTTCCTTGTTAGCAGCC+AGG + chr1.2:3883119-3883138 MS.gene044021:CDS 50.0%
CCAACACTATCTTGCTCGAC+TGG + chr1.2:3881816-3881835 MS.gene044021:CDS 50.0%
CCAGTCGAGCAAGATAGTGT+TGG - chr1.2:3881819-3881838 None:intergenic 50.0%
CTAAACGCAAGGTTTCCAGC+CGG + chr1.2:3881662-3881681 MS.gene044021:CDS 50.0%
CTGAATGGCTTCTCTCCCTA+AGG + chr1.2:3880297-3880316 MS.gene044021:CDS 50.0%
CTTAGGGAGAGAAGCCATTC+AGG - chr1.2:3880299-3880318 None:intergenic 50.0%
GGCTTCGCTCTTCTGATGTA+TGG + chr1.2:3881335-3881354 MS.gene044021:CDS 50.0%
TGGCTCACACGCAGTTCAAT+TGG + chr1.2:3882791-3882810 MS.gene044021:CDS 50.0%
TTGACCATCGGAATGCCTCT+TGG - chr1.2:3883196-3883215 None:intergenic 50.0%
ACTGATCGGCATTCCTGGGA+GGG - chr1.2:3883076-3883095 None:intergenic 55.0%
AGGTCACTGATCGGCATTCC+TGG - chr1.2:3883081-3883100 None:intergenic 55.0%
CTGCCGTGTGCAAGAATCAG+AGG - chr1.2:3882871-3882890 None:intergenic 55.0%
GGGTAACCTGGCTGCTAACA+AGG - chr1.2:3883128-3883147 None:intergenic 55.0%
GGTCACTGATCGGCATTCCT+GGG - chr1.2:3883080-3883099 None:intergenic 55.0%
GTTCACGGCAGACTGAGTAG+AGG - chr1.2:3883101-3883120 None:intergenic 55.0%
CACTGATCGGCATTCCTGGG+AGG - chr1.2:3883077-3883096 None:intergenic 60.0%
CAGAAGAGCGAAGCCGCATC+TGG - chr1.2:3881330-3881349 None:intergenic 60.0%
! AGTACTGGATGTCTGCCGGC+TGG - chr1.2:3881680-3881699 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3879972 3883278 3879972 ID=MS.gene044021
chr1.2 mRNA 3879972 3883278 3879972 ID=MS.gene044021.t1;Parent=MS.gene044021
chr1.2 exon 3879972 3880124 3879972 ID=MS.gene044021.t1.exon1;Parent=MS.gene044021.t1
chr1.2 CDS 3879972 3880124 3879972 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
chr1.2 exon 3880212 3880318 3880212 ID=MS.gene044021.t1.exon2;Parent=MS.gene044021.t1
chr1.2 CDS 3880212 3880318 3880212 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
chr1.2 exon 3881331 3881463 3881331 ID=MS.gene044021.t1.exon3;Parent=MS.gene044021.t1
chr1.2 CDS 3881331 3881463 3881331 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
chr1.2 exon 3881619 3881895 3881619 ID=MS.gene044021.t1.exon4;Parent=MS.gene044021.t1
chr1.2 CDS 3881619 3881895 3881619 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
chr1.2 exon 3882776 3883000 3882776 ID=MS.gene044021.t1.exon5;Parent=MS.gene044021.t1
chr1.2 CDS 3882776 3883000 3882776 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
chr1.2 exon 3883082 3883278 3883082 ID=MS.gene044021.t1.exon6;Parent=MS.gene044021.t1
chr1.2 CDS 3883082 3883278 3883082 ID=cds.MS.gene044021.t1;Parent=MS.gene044021.t1
Gene Sequence

>MS.gene044021

ATGAATGACAACGAGAATTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATTTAGAATTCTCAAGAAACTATTTTCTAGCAAAGGAATTAACATCTTCCGTGAAGAAATCCAAACACAAGATTACTGATATCGATGTTGTTGATGAACAGGTAAGTATCAATTGATGAATGAAAATGAACTTTTTTATTCTATTGAATTTCTGCTTATACTTAGTTTTTGATTTTGTATGTGATTAGGAACTTAGAGAAGCCTCATTGCATATTCAACCTAAACATGAAAAGGAAATTGGGCTTTTAATCGATTCGTATGCTGCTATGTATCCTGAATGGCTTCTCTCCCTAAGGTATCACTCTCTTTTCATTCTTATCATTCAAATAATAGTGTATGTATCTAGAGTGTGTTTGGAGTGAGAAGTATGTTATGTGTGTGTTTGGTTATGCGGTAACGTAAATTGATTTTGTAAAATTGATTCTGGGTAAAAGTGAGTTGAATGTAATGTGATTTATGTTTGGATGTATTGATGTAAAATTGAAAAATTAACCAAACATGTCAAAATCAATTCTACACCTCCAAAATCAATTCTGCAAGCGAAATCAATTCTTCTTTAAATCAACCAAATATGTCAAAATCAATTCTACATCTCTAGAATCAATTTTGACTCCTCCAAAAGTGGAACCAAAGATGCAGTGTTTGTTTAACATACCAAAAAGTTTTGTCTTATGCACTTAAATGTTTGTTCGTTATACATGTTTCAATTGAGTATAACTCATATTCGCTTATAATTGGGCAGACCCTCTAGCGTTGCAAGTTGATAAAGTTGAGATGGACAGTAGTATTTAAATAAAGCTCTGTACTTTGTAACCCTAATTCTTTGCATAATAAAAAGTGCAATAGCCACTTTGCTATCATTGACGTAGGCATAATTGGCTGAACTTCATGACTAATCGTTATGTTCTGGTGCCTTTATCTTCTTACTTTAGAACCGGACTTGCTATTCTAACTATTGCCATGATAAACATAGGATTTGAAATGGATGGAAAATGAAATCAAAGGTGAACCGAAGTATGAAGTATGTGCTATGTAAGCAGTCTTCATAAGCTATCTGGGAGTTTGTTAAAATAAATTATAAATCATAAACTATTTATGTATACCCTTGCAAAAAATATTACACAATTTATATCATGACATAAGTCCAAATAAGCTATTTTAAGTACATATTTATACTCTTTCAGTATTGTATAATGTATTATAGCTTGTTGAATTAGATTTGTATTTTTAAAAAGTGACTTTAAGATGTGCATTTTTAAGTTTTACGTTGGAAATATTGTGACCTTCACTTTTTTTTAATGAGCCAGATGCGGCTTCGCTCTTCTGATGTATGGCTTTGGATCTAAGAAGGCTTTGATTGAAGACTTTGCTTCAAAGACACTGACTGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAACAGGTTTGTATTGCCCCTAACATCTTGCATTCCACAGAAACATGTAATTATAGCTCTTTGGTAGTGAAAAGTTAAGGCAAAAATGGAGACAGATGAATGTCTTAGTGAAGGATCCCGAGTGTGCTATGCTCTAAGTTTTTTTCTTTTTAACATATTAGGTTCTGATAGCTTTGACTGAACTTCTATGTGATCAAGTGAAAGCTAAACGCAAGGTTTCCAGCCGGCAGACATCCAGTACTCAATCTATGGAAGATCTTCTTACATTTTTGTATGAAGTGGAAGTAGAAGACAGCGATTCTTTCGTTTGTGTAGTCATTCACAATATTGATGGACCAGGATTAAGGGACTCTGAAACCCAACACTATCTTGCTCGACTGGCTTCTTGTACCCATATTCGCATTGTTGCTTCTATTGATCATGTTAATGCTCCCCTGTGTAAGTTTAGTTAATATTGTGACATTATCTTGTGCTGAATATATTCCTTGTAAATTGTTAGTGTAGTCAGTCTTGCCATATTTCATCATCTTTAGGCATGTCTTCATGTTATGTTTGCTTGAATTTTTTTTCAGGTTGGAATTGTTTTATTATCATCTGTTGGAGGTTTATTTTGGGTGTCTTAAATTTGAATTGTAAATAGGAGCTTCAATAGTGCAGTTTAGAATTAAATTTGCATAAAATCAATTACTTCATTATTAGTTCACAATCCAAAAGTATAAAGCCTTTTTGAAACATTTTATTGAAATTTTTGTTTGATTTGTGCTCTGAGGATCTGATCCTATGTTTTTATATCTGTTTAACCAGACAATAGGACTTACTGGCATCACCCTTTTAGAAAGTTGAAGAACCAAAACTTTTCTTGTTCTTGAGACTTAAAATCGCTACTATTATTTATTTACCCTTCCGCTTTATAGTCGTTTGTAGGAAAGAAATGAACAAGATTAAAACTGATCGTATTAGAGAAATTAGGAGCGGCACATATTGAGCAAAAGTGGTAGAGTGACATCTGTAAGATAGTTTGGTCAAGTGAGTAAAAGACCAAAAAATAAGAATTGATCAAATGAAAAATAACCTGCACAATCAGATGTATAAGACGATTAAAAAAAAAAAAGCAAAACTATTAAAAATGACTAGGATCTAAATGGTTGCTCCTGTCCAAGACTTAGTGTTGATAGAATATAATGGCATCATTTAATCTATTTAGGAGTAGAGAAATGACTCTTGTTGCAGTAGGGAGAAAAATGAAGTATATGCGACTATATAAAGGATTTTCTGCTGCCTCTTCTAGTTGCTTAACAGTTACATCTTCTGTTGGCAGTTTGGGACAAGAATATGGCTCACACGCAGTTCAATTGGTGCTGGCATCATGTTCCTACATTTGCCCCATATAAGATTGAAGGCATGTTTTATCCTCTGATTCTTGCACACGGCAGTGCCAGCCAAAGTGTCAAAACAGCTGCAATAGTTTTGCAAAGTTTGACACCCAATGCCCAGAGTGTATTCAAAGTTCTTGCTGAATATCAAATTTCCAATCCTGATGAAGGCAAGTTTTTATCATTTTACTTGGATCTCATATGCTGTTCTTTTCATATATAGGTGTCCTAACTGTATTTTTCCCTCCCAGGAATGCCGATCAGTGACCTCTACTCAGTCTGCCGTGAACGTTTCCTTGTTAGCAGCCAGGTTACCCTGAATTCTCATTTGACAGAATTTAAAGACCATGAGCTGGTCAAAACCAAGAGGCATTCCGATGGTCAAGATTGCTTGCACATCCCTCTTACAACCGAAGCACTTCAGAAAGTTCTACTTGAGATCAGTTAG
Protein sequence

>MS.gene044021.t1

MNDNENWEEEEEEEEEEDLEFSRNYFLAKELTSSVKKSKHKITDIDVVDEQELREASLHIQPKHEKEIGLLIDSYAAMYPEWLLSLRCGFALLMYGFGSKKALIEDFASKTLTEYSVVVINGYLQTINLKQVLIALTELLCDQVKAKRKVSSRQTSSTQSMEDLLTFLYEVEVEDSDSFVCVVIHNIDGPGLRDSETQHYLARLASCTHIRIVASIDHVNAPLFWDKNMAHTQFNWCWHHVPTFAPYKIEGMFYPLILAHGSASQSVKTAAIVLQSLTPNAQSVFKVLAEYQISNPDEGMPISDLYSVCRERFLVSSQVTLNSHLTEFKDHELVKTKRHSDGQDCLHIPLTTEALQKVLLEIS