Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24383.t1 | XP_003589220.1 | 98 | 344 | 7 | 0 | 17 | 360 | 18 | 361 | 4.70E-190 | 673.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24383.t1 | Q38899 | 66.5 | 349 | 111 | 2 | 18 | 360 | 14 | 362 | 8.3e-135 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24383.t1 | G7I3N6 | 98.0 | 344 | 7 | 0 | 17 | 360 | 18 | 361 | 3.4e-190 | 673.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058128 | MS.gene24383 | 0.811871 | 5.64E-51 | -1.69E-46 |
| MS.gene059616 | MS.gene24383 | 0.804859 | 1.76E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24383.t1 | MTR_1g019770 | 97.230 | 361 | 9 | 1 | 1 | 360 | 1 | 361 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24383.t1 | AT2G37560 | 66.476 | 349 | 111 | 2 | 18 | 360 | 14 | 362 | 2.34e-172 | 484 |
| MS.gene24383.t1 | AT2G37560 | 64.244 | 344 | 109 | 2 | 18 | 360 | 14 | 344 | 4.48e-170 | 478 |
Find 73 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAACATGAAAAGGAAAT+TGG | 0.153499 | 1.1:+3365240 | MS.gene24383:CDS |
| AACATGCCTTCAATCTTATA+TGG | 0.207992 | 1.1:-3367837 | None:intergenic |
| TATTCTGTAGTTGTCATTAA+TGG | 0.229602 | 1.1:+3366469 | MS.gene24383:CDS |
| TGGAGGCTACAATACGAATA+TGG | 0.260047 | 1.1:-3366908 | None:intergenic |
| AAAGCTAAACACAAGGTTTC+CGG | 0.285929 | 1.1:+3366717 | MS.gene24383:CDS |
| GGCAGTTTGGGACAAGAATA+TGG | 0.289237 | 1.1:+3367767 | MS.gene24383:intron |
| ATATTGATGGACCAGGATTA+AGG | 0.310552 | 1.1:+3366841 | MS.gene24383:CDS |
| GATATCAGTAATCTTGTGTT+TGG | 0.329500 | 1.1:-3365082 | None:intergenic |
| CTTAGGGAGAGAAGCCATTC+AGG | 0.346202 | 1.1:-3365294 | None:intergenic |
| ATTCTGTAGTTGTCATTAAT+GGG | 0.355542 | 1.1:+3366470 | MS.gene24383:CDS |
| AGATGAACAACAACGACAAT+TGG | 0.357101 | 1.1:+3364977 | None:intergenic |
| GTAGTAATTCACAATATTGA+TGG | 0.374954 | 1.1:+3366828 | MS.gene24383:CDS |
| GCTCTTCTGATGTATGGCTT+TGG | 0.385885 | 1.1:+3366397 | MS.gene24383:CDS |
| ACATGCCTTCAATCTTATAT+GGG | 0.410899 | 1.1:-3367836 | None:intergenic |
| TCAGACCATTAACTTAAAAC+AGG | 0.411589 | 1.1:+3366498 | MS.gene24383:CDS |
| TTGAATACACTCTGGGCATT+GGG | 0.413303 | 1.1:-3367936 | None:intergenic |
| TACTCTGAATTCTCATTTGA+CGG | 0.418075 | 1.1:+3368140 | MS.gene24383:CDS |
| CCAGACGAGCGAGGTATTGT+TGG | 0.423306 | 1.1:-3366875 | None:intergenic |
| ATATTAGGTTCTGATAGCTT+TGG | 0.426600 | 1.1:+3366671 | MS.gene24383:intron |
| TGAAGTGCTTCGGTTGTAAG+AGG | 0.428767 | 1.1:-3368228 | None:intergenic |
| GGATTCGCTCTTCTGATGTA+TGG | 0.431543 | 1.1:+3366391 | MS.gene24383:CDS |
| TTTGAATACACTCTGGGCAT+TGG | 0.433936 | 1.1:-3367937 | None:intergenic |
| CTAAACATGAAAAGGAAATT+GGG | 0.440776 | 1.1:+3365241 | MS.gene24383:CDS |
| TGGCTCACACACAGTTCAAT+TGG | 0.450005 | 1.1:+3367787 | MS.gene24383:CDS |
| TATTGATGGACCAGGATTAA+GGG | 0.455380 | 1.1:+3366842 | MS.gene24383:CDS |
| CAGACGAGCGAGGTATTGTT+GGG | 0.459713 | 1.1:-3366874 | None:intergenic |
| TTTGCCCCATATAAGATTGA+AGG | 0.461148 | 1.1:+3367831 | MS.gene24383:CDS |
| GTTTCAGAGTCCCTTAATCC+TGG | 0.463196 | 1.1:-3366852 | None:intergenic |
| CCAACAATACCTCGCTCGTC+TGG | 0.463209 | 1.1:+3366875 | MS.gene24383:CDS |
| TATTCAACCTAAACATGAAA+AGG | 0.467955 | 1.1:+3365233 | MS.gene24383:CDS |
| GATGAACAACAACGACAATT+GGG | 0.477909 | 1.1:+3364978 | None:intergenic |
| TCTTACATTGTTGTATGAAG+TGG | 0.478921 | 1.1:+3366776 | MS.gene24383:CDS |
| TATCGATGTTGTTGATGAAC+AGG | 0.486845 | 1.1:+3365101 | MS.gene24383:CDS |
| ATCTTATATGGGGCAAATGT+AGG | 0.486995 | 1.1:-3367825 | None:intergenic |
| CTTGTGTTTGGATTTCTTCA+CGG | 0.487363 | 1.1:-3365070 | None:intergenic |
| GTATGGCTTTGGATCTAAGA+AGG | 0.495801 | 1.1:+3366408 | MS.gene24383:CDS |
| GGAGGCTACAATACGAATAT+GGG | 0.507220 | 1.1:-3366907 | None:intergenic |
| GAGTAACCTGGCTGCTAACA+AGG | 0.508129 | 1.1:-3368122 | None:intergenic |
| ACGTTTCCTTGTTAGCAGCC+AGG | 0.508235 | 1.1:+3368116 | MS.gene24383:CDS |
| TGCTAACAAGGAAACGTTCT+CGG | 0.508303 | 1.1:-3368110 | None:intergenic |
| TTGACCATCGGAATGCCTCT+TGG | 0.512065 | 1.1:-3368190 | None:intergenic |
| GGAAGAGGAAGAAGAAGAAG+AGG | 0.513270 | 1.1:+3364999 | MS.gene24383:CDS |
| CAAATTTCTCATCCCGATGA+AGG | 0.522168 | 1.1:+3367975 | MS.gene24383:CDS |
| GGGAGCATTAACATGGTCAA+TGG | 0.522317 | 1.1:-3366928 | None:intergenic |
| CTGAATGGCTTCTCTCCCTA+AGG | 0.525332 | 1.1:+3365295 | MS.gene24383:CDS |
| CAAGAACTTTGAATACACTC+TGG | 0.530976 | 1.1:-3367944 | None:intergenic |
| ATCTTCAATAGATTGAGTAC+TGG | 0.534306 | 1.1:-3366751 | None:intergenic |
| GGAATTTAAAGATCACGAAC+TGG | 0.544269 | 1.1:+3368161 | MS.gene24383:CDS |
| ATTGAGTACTGGATGGCTGC+CGG | 0.547630 | 1.1:-3366740 | None:intergenic |
| CAACAACGACAATTGGGAAG+AGG | 0.569094 | 1.1:+3364984 | MS.gene24383:CDS |
| AGTACTGGATGGCTGCCGGC+CGG | 0.572496 | 1.1:-3366736 | None:intergenic |
| ACACACAGTTCAATTGGTGC+TGG | 0.584222 | 1.1:+3367793 | MS.gene24383:CDS |
| GAAGTGCTTCGGTTGTAAGA+GGG | 0.584506 | 1.1:-3368227 | None:intergenic |
| ATTCACAATATTGATGGACC+AGG | 0.597689 | 1.1:+3366834 | MS.gene24383:CDS |
| ATGCTGCTATGTATCCTGAA+TGG | 0.598898 | 1.1:+3365280 | MS.gene24383:CDS |
| GTTGTATGAAGTGGAAGTAG+AGG | 0.603568 | 1.1:+3366785 | MS.gene24383:CDS |
| AATACGAATATGGGTACAAG+AGG | 0.603954 | 1.1:-3366898 | None:intergenic |
| AAGAACTTTGAATACACTCT+GGG | 0.606048 | 1.1:-3367943 | None:intergenic |
| TCAATAGATTGAGTACTGGA+TGG | 0.610328 | 1.1:-3366747 | None:intergenic |
| CATGCCTTCAATCTTATATG+GGG | 0.613591 | 1.1:-3367835 | None:intergenic |
| CTGCCGTGTGCAAGAATCAG+AGG | 0.614174 | 1.1:-3367864 | None:intergenic |
| GTGCAAGCAATCTTGACCAT+CGG | 0.614626 | 1.1:-3368202 | None:intergenic |
| AGCATTAACATGGTCAATGG+AGG | 0.619176 | 1.1:-3366925 | None:intergenic |
| TTTAGGTTGAATATGCAATG+AGG | 0.624337 | 1.1:-3365223 | None:intergenic |
| TACAAAGGGGAGCATTAACA+TGG | 0.630431 | 1.1:-3366935 | None:intergenic |
| AATGAGAATTCAGAGTAACC+TGG | 0.635096 | 1.1:-3368134 | None:intergenic |
| CTAAACACAAGGTTTCCGGC+CGG | 0.653128 | 1.1:+3366721 | MS.gene24383:CDS |
| TACAAGAGGCCAGACGAGCG+AGG | 0.653242 | 1.1:-3366884 | None:intergenic |
| TATCCTCTGATTCTTGCACA+CGG | 0.655621 | 1.1:+3367861 | MS.gene24383:CDS |
| AAGACCAAGAGGCATTCCGA+TGG | 0.661202 | 1.1:+3368186 | MS.gene24383:CDS |
| ACGAACTGGTCAAGACCAAG+AGG | 0.697181 | 1.1:+3368175 | MS.gene24383:CDS |
| ACTGAGTAGAGATCACTGAT+CGG | 0.699405 | 1.1:-3368084 | None:intergenic |
| TCAAATGAAAGCTAAACACA+AGG | 0.718480 | 1.1:+3366710 | MS.gene24383:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTATTAAAAATGATT+TGG | + | chr1.1:3367566-3367585 | MS.gene24383:intron | 10.0% |
| !! | ATTTGATCAATTATTATTAT+TGG | - | chr1.1:3367497-3367516 | None:intergenic | 10.0% |
| !!! | TTCAATAACATATTTTAAAA+TGG | - | chr1.1:3367138-3367157 | None:intergenic | 10.0% |
| !! | AATAAACATAGAATTTGAAA+TGG | + | chr1.1:3365987-3366006 | MS.gene24383:intron | 15.0% |
| !!! | TAAGTTTTTATCATTTTACT+TGG | + | chr1.1:3367998-3368017 | MS.gene24383:intron | 15.0% |
| !!! | TTTTATTATGCAAAGAATTA+GGG | - | chr1.1:3365842-3365861 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTCAACATATT+AGG | + | chr1.1:3366656-3366675 | MS.gene24383:intron | 15.0% |
| !! | AATGTAATGTGATTTATGTT+TGG | + | chr1.1:3365463-3365482 | MS.gene24383:intron | 20.0% |
| !! | TGTACTTAAAATAGCTTATT+TGG | - | chr1.1:3366220-3366239 | None:intergenic | 20.0% |
| !! | TTCAAATTCTATGTTTATTG+TGG | - | chr1.1:3365986-3366005 | None:intergenic | 20.0% |
| !!! | CTTTTATTATGCAAAGAATT+AGG | - | chr1.1:3365843-3365862 | None:intergenic | 20.0% |
| !!! | GATTTTGTAAAATTGATTCT+GGG | + | chr1.1:3365427-3365446 | MS.gene24383:intron | 20.0% |
| !!! | TAAATTGTGTGTGAATTTTT+TGG | - | chr1.1:3366144-3366163 | None:intergenic | 20.0% |
| !!! | TGATTTTGTAAAATTGATTC+TGG | + | chr1.1:3365426-3365445 | MS.gene24383:intron | 20.0% |
| !!! | TTTTGATTTTGTATGTGATT+AGG | + | chr1.1:3365188-3365207 | MS.gene24383:intron | 20.0% |
| ! | AAACATGTAATATAGCTCTT+TGG | + | chr1.1:3366554-3366573 | MS.gene24383:intron | 25.0% |
| ! | AAGTATATGTGACTATATGA+AGG | + | chr1.1:3367696-3367715 | MS.gene24383:intron | 25.0% |
| ! | ATTCTGTAGTTGTCATTAAT+GGG | + | chr1.1:3366470-3366489 | MS.gene24383:CDS | 25.0% |
| ! | CCATATCTAAAGATGAAATA+TGG | - | chr1.1:3367033-3367052 | None:intergenic | 25.0% |
| ! | CCATATTTCATCTTTAGATA+TGG | + | chr1.1:3367030-3367049 | MS.gene24383:intron | 25.0% |
| ! | CTAAACATGAAAAGGAAATT+GGG | + | chr1.1:3365241-3365260 | MS.gene24383:CDS | 25.0% |
| ! | GTAGTAATTCACAATATTGA+TGG | + | chr1.1:3366828-3366847 | MS.gene24383:CDS | 25.0% |
| ! | TATTCAACCTAAACATGAAA+AGG | + | chr1.1:3365233-3365252 | MS.gene24383:CDS | 25.0% |
| ! | TATTCTGTAGTTGTCATTAA+TGG | + | chr1.1:3366469-3366488 | MS.gene24383:CDS | 25.0% |
| ! | TGATAAAAACTTACCTTCAT+CGG | - | chr1.1:3367991-3368010 | None:intergenic | 25.0% |
| ! | TTATACAGAGCTAAAAACTT+AGG | - | chr1.1:3367216-3367235 | None:intergenic | 25.0% |
| !! | AACATAGAATTTGAAATGGA+TGG | + | chr1.1:3365991-3366010 | MS.gene24383:intron | 25.0% |
| !! | ACATAGAATTTGAAATGGAT+GGG | + | chr1.1:3365992-3366011 | MS.gene24383:intron | 25.0% |
| !! | TTAACAGTTACATCTTCTTT+TGG | + | chr1.1:3367746-3367765 | MS.gene24383:intron | 25.0% |
| !!! | AAGAAACTATTTTCTAGCAA+AGG | + | chr1.1:3365035-3365054 | MS.gene24383:CDS | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr1.1:3365517-3365536 | None:intergenic | 25.0% |
| !!! | ATCTGTTTGAGATTTCTTTT+GGG | + | chr1.1:3367088-3367107 | MS.gene24383:intron | 25.0% |
| !!! | CTTGGTTTTGATAGATATAA+TGG | + | chr1.1:3367618-3367637 | MS.gene24383:intron | 25.0% |
| !!! | GTGCATATGACATAATTTTT+TGG | - | chr1.1:3365683-3365702 | None:intergenic | 25.0% |
| !!! | GTGCATTTTAAGTTTTACAT+TGG | + | chr1.1:3366328-3366347 | MS.gene24383:intron | 25.0% |
| !!! | GTTCTAAAGTAAGAAGATAA+AGG | - | chr1.1:3365940-3365959 | None:intergenic | 25.0% |
| !!! | TATCTGTTTGAGATTTCTTT+TGG | + | chr1.1:3367087-3367106 | MS.gene24383:intron | 25.0% |
| !!! | TATTTTTGCTGTTTATCACT+GGG | + | chr1.1:3367171-3367190 | MS.gene24383:intron | 25.0% |
| !!! | TGTGTGTGAATTTTTTGTAA+GGG | - | chr1.1:3366139-3366158 | None:intergenic | 25.0% |
| !!! | TTATCTTCTTACTTTAGAAC+CGG | + | chr1.1:3365940-3365959 | MS.gene24383:intron | 25.0% |
| !!! | TTATTTTTGCTGTTTATCAC+TGG | + | chr1.1:3367170-3367189 | MS.gene24383:intron | 25.0% |
| !!! | TTGTGTGTGAATTTTTTGTA+AGG | - | chr1.1:3366140-3366159 | None:intergenic | 25.0% |
| AACATGCCTTCAATCTTATA+TGG | - | chr1.1:3367840-3367859 | None:intergenic | 30.0% | |
| AACTCATATTCGCTTATAAG+TGG | + | chr1.1:3365741-3365760 | MS.gene24383:intron | 30.0% | |
| AAGAACTTTGAATACACTCT+GGG | - | chr1.1:3367946-3367965 | None:intergenic | 30.0% | |
| AATAGTTAGAATAGCAAGTC+CGG | - | chr1.1:3365962-3365981 | None:intergenic | 30.0% | |
| AATTTCTTAGTGAAGGATCT+CGG | + | chr1.1:3366610-3366629 | MS.gene24383:intron | 30.0% | |
| ACAGATGAATTTCTTAGTGA+AGG | + | chr1.1:3366603-3366622 | MS.gene24383:intron | 30.0% | |
| ACATGCCTTCAATCTTATAT+GGG | - | chr1.1:3367839-3367858 | None:intergenic | 30.0% | |
| ACTCATATTCGCTTATAAGT+GGG | + | chr1.1:3365742-3365761 | MS.gene24383:intron | 30.0% | |
| AGTGAAAAGTTAAGGCAAAA+TGG | + | chr1.1:3366578-3366597 | MS.gene24383:intron | 30.0% | |
| ATCTATCAAAACCAAGACTT+GGG | - | chr1.1:3367614-3367633 | None:intergenic | 30.0% | |
| ATCTTCAATAGATTGAGTAC+TGG | - | chr1.1:3366754-3366773 | None:intergenic | 30.0% | |
| ATGTCGTCTATAAGATAGTT+TGG | + | chr1.1:3367455-3367474 | MS.gene24383:intron | 30.0% | |
| CAGTAACTAAACTTACAAAG+GGG | - | chr1.1:3366951-3366970 | None:intergenic | 30.0% | |
| CCTAAACATGAAAAGGAAAT+TGG | + | chr1.1:3365240-3365259 | MS.gene24383:CDS | 30.0% | |
| CTCAAGACGAAGAAAATATT+TGG | - | chr1.1:3367286-3367305 | None:intergenic | 30.0% | |
| CTGTTAAGAAAAATAGTCAG+AGG | - | chr1.1:3367733-3367752 | None:intergenic | 30.0% | |
| GATAAAAACTTACCTTCATC+GGG | - | chr1.1:3367990-3368009 | None:intergenic | 30.0% | |
| GATATCAGTAATCTTGTGTT+TGG | - | chr1.1:3365085-3365104 | None:intergenic | 30.0% | |
| GATGGCATATATTAAGCAAA+AGG | + | chr1.1:3367418-3367437 | MS.gene24383:intron | 30.0% | |
| GCAGTAACTAAACTTACAAA+GGG | - | chr1.1:3366952-3366971 | None:intergenic | 30.0% | |
| TACTCTGAATTCTCATTTGA+CGG | + | chr1.1:3368140-3368159 | MS.gene24383:CDS | 30.0% | |
| TATCTATCAAAACCAAGACT+TGG | - | chr1.1:3367615-3367634 | None:intergenic | 30.0% | |
| TCAAATGAAAGCTAAACACA+AGG | + | chr1.1:3366710-3366729 | MS.gene24383:CDS | 30.0% | |
| TCAGACCATTAACTTAAAAC+AGG | + | chr1.1:3366498-3366517 | MS.gene24383:CDS | 30.0% | |
| TCTTACATTGTTGTATGAAG+TGG | + | chr1.1:3366776-3366795 | MS.gene24383:CDS | 30.0% | |
| ! | AGCTATATTACATGTTTCTG+TGG | - | chr1.1:3366551-3366570 | None:intergenic | 30.0% |
| ! | ATATTAGGTTCTGATAGCTT+TGG | + | chr1.1:3366671-3366690 | MS.gene24383:intron | 30.0% |
| ! | ATGCTGTTCTTTTCATATGT+AGG | + | chr1.1:3368028-3368047 | MS.gene24383:intron | 30.0% |
| ! | CCAATTTCCTTTTCATGTTT+AGG | - | chr1.1:3365243-3365262 | None:intergenic | 30.0% |
| !! | TCTTTGGTAGTGAAAAGTTA+AGG | + | chr1.1:3366570-3366589 | MS.gene24383:intron | 30.0% |
| !! | TTTAGGTTGAATATGCAATG+AGG | - | chr1.1:3365226-3365245 | None:intergenic | 30.0% |
| !!! | AGTTTTTAGCTCTGTATAAC+TGG | + | chr1.1:3367217-3367236 | MS.gene24383:intron | 30.0% |
| !!! | GCAAACCTGTTTTAAGTTAA+TGG | - | chr1.1:3366506-3366525 | None:intergenic | 30.0% |
| !!! | TAGAACTTTTTGAAGTGCTT+CGG | - | chr1.1:3368241-3368260 | None:intergenic | 30.0% |
| AAACGACTCTTGAAATCTTG+TGG | + | chr1.1:3367657-3367676 | MS.gene24383:intron | 35.0% | |
| AAAGCTAAACACAAGGTTTC+CGG | + | chr1.1:3366717-3366736 | MS.gene24383:CDS | 35.0% | |
| AACTGGACAATAGGACTAAA+TGG | + | chr1.1:3367234-3367253 | MS.gene24383:intron | 35.0% | |
| AAGTATGTTATGCGTGTGTT+TGG | + | chr1.1:3365385-3365404 | MS.gene24383:intron | 35.0% | |
| AATACGAATATGGGTACAAG+AGG | - | chr1.1:3366901-3366920 | None:intergenic | 35.0% | |
| AATGAGAATTCAGAGTAACC+TGG | - | chr1.1:3368137-3368156 | None:intergenic | 35.0% | |
| ACAAACACTTACTGCATCTT+TGG | - | chr1.1:3365652-3365671 | None:intergenic | 35.0% | |
| ATAGCACATACTTCTTACTC+CGG | - | chr1.1:3366036-3366055 | None:intergenic | 35.0% | |
| ATCATTGACGTAGGCATAAT+TGG | + | chr1.1:3365881-3365900 | MS.gene24383:intron | 35.0% | |
| ATCTTATATGGGGCAAATGT+AGG | - | chr1.1:3367828-3367847 | None:intergenic | 35.0% | |
| ATGGATGGGAAATGAAATCA+AGG | + | chr1.1:3366006-3366025 | MS.gene24383:intron | 35.0% | |
| ATTAAGCAAAAGGTGGTACT+TGG | + | chr1.1:3367428-3367447 | MS.gene24383:intron | 35.0% | |
| ATTTCTTAGTGAAGGATCTC+GGG | + | chr1.1:3366611-3366630 | MS.gene24383:intron | 35.0% | |
| CAAGAACTTTGAATACACTC+TGG | - | chr1.1:3367947-3367966 | None:intergenic | 35.0% | |
| CATGACTAATCGTTATGTTC+TGG | + | chr1.1:3365912-3365931 | MS.gene24383:intron | 35.0% | |
| CATGCCTTCAATCTTATATG+GGG | - | chr1.1:3367838-3367857 | None:intergenic | 35.0% | |
| CTTGTGTTTGGATTTCTTCA+CGG | - | chr1.1:3365073-3365092 | None:intergenic | 35.0% | |
| GAAAAGAGAGTGATACCTTA+GGG | - | chr1.1:3365313-3365332 | None:intergenic | 35.0% | |
| GAAATGAAATCAAGGTGAAC+CGG | + | chr1.1:3366014-3366033 | MS.gene24383:intron | 35.0% | |
| GCAAGTTGTTAAAGTTGAGA+TGG | + | chr1.1:3365781-3365800 | MS.gene24383:intron | 35.0% | |
| GGAAGGGAAAAAATACAGTT+AGG | - | chr1.1:3368057-3368076 | None:intergenic | 35.0% | |
| GGAATTTAAAGATCACGAAC+TGG | + | chr1.1:3368161-3368180 | MS.gene24383:CDS | 35.0% | |
| GGCAGTAACTAAACTTACAA+AGG | - | chr1.1:3366953-3366972 | None:intergenic | 35.0% | |
| GGCATATATTAAGCAAAAGG+TGG | + | chr1.1:3367421-3367440 | MS.gene24383:intron | 35.0% | |
| GGCTCATTCAAAAAAAGTGA+AGG | - | chr1.1:3366365-3366384 | None:intergenic | 35.0% | |
| GTCTATAAGATAGTTTGGTC+AGG | + | chr1.1:3367460-3367479 | MS.gene24383:intron | 35.0% | |
| TAACAACTTGCAATGCTAGA+GGG | - | chr1.1:3365772-3365791 | None:intergenic | 35.0% | |
| TCTGCTTTACAGTTGTTTGT+AGG | + | chr1.1:3367339-3367358 | MS.gene24383:intron | 35.0% | |
| TGAAAAGAGAGTGATACCTT+AGG | - | chr1.1:3365314-3365333 | None:intergenic | 35.0% | |
| TGACTACATTTGTGAAAGAC+AGG | + | chr1.1:3367389-3367408 | MS.gene24383:intron | 35.0% | |
| TTAACAACTTGCAATGCTAG+AGG | - | chr1.1:3365773-3365792 | None:intergenic | 35.0% | |
| TTTGCCCCATATAAGATTGA+AGG | + | chr1.1:3367831-3367850 | MS.gene24383:CDS | 35.0% | |
| ! | ACATCTTCTTTTGGCAGTTT+GGG | + | chr1.1:3367755-3367774 | MS.gene24383:intron | 35.0% |
| ! | AGAAGTATGTGCTATGTAAG+CGG | + | chr1.1:3366041-3366060 | MS.gene24383:intron | 35.0% |
| ! | ATATTGATGGACCAGGATTA+AGG | + | chr1.1:3366841-3366860 | MS.gene24383:CDS | 35.0% |
| ! | ATTCACAATATTGATGGACC+AGG | + | chr1.1:3366834-3366853 | MS.gene24383:CDS | 35.0% |
| ! | GTATGTATCTAGAGTGTGTT+TGG | + | chr1.1:3365356-3365375 | MS.gene24383:intron | 35.0% |
| ! | TACATCTTCTTTTGGCAGTT+TGG | + | chr1.1:3367754-3367773 | MS.gene24383:intron | 35.0% |
| ! | TATCGATGTTGTTGATGAAC+AGG | + | chr1.1:3365101-3365120 | MS.gene24383:CDS | 35.0% |
| ! | TATTGATGGACCAGGATTAA+GGG | + | chr1.1:3366842-3366861 | MS.gene24383:CDS | 35.0% |
| !! | TCAATAGATTGAGTACTGGA+TGG | - | chr1.1:3366750-3366769 | None:intergenic | 35.0% |
| !!! | AACTGTATTTTTTCCCTTCC+AGG | + | chr1.1:3368057-3368076 | MS.gene24383:intron | 35.0% |
| !!! | AATTTTGACTCCTCCAAAAG+TGG | + | chr1.1:3365624-3365643 | MS.gene24383:intron | 35.0% |
| !!! | TTTTTTGAATGAGCCAGATG+CGG | + | chr1.1:3366370-3366389 | MS.gene24383:intron | 35.0% |
| AAAACCAAGACTTGGGACTT+GGG | - | chr1.1:3367607-3367626 | None:intergenic | 40.0% | |
| ACTGAGTAGAGATCACTGAT+CGG | - | chr1.1:3368087-3368106 | None:intergenic | 40.0% | |
| AGCATTAACATGGTCAATGG+AGG | - | chr1.1:3366928-3366947 | None:intergenic | 40.0% | |
| ATGCTGCTATGTATCCTGAA+TGG | + | chr1.1:3365280-3365299 | MS.gene24383:CDS | 40.0% | |
| CAAATTTCTCATCCCGATGA+AGG | + | chr1.1:3367975-3367994 | MS.gene24383:CDS | 40.0% | |
| CTACGTCAATGATAGCAAAG+TGG | - | chr1.1:3365874-3365893 | None:intergenic | 40.0% | |
| CTGTGGAATGCAAGATGTTA+GGG | - | chr1.1:3366534-3366553 | None:intergenic | 40.0% | |
| CTTGAAATCTTGTGGCAGTA+GGG | + | chr1.1:3367665-3367684 | MS.gene24383:intron | 40.0% | |
| GCTCTGTATAACTGGACAAT+AGG | + | chr1.1:3367225-3367244 | MS.gene24383:intron | 40.0% | |
| GGAGGCTACAATACGAATAT+GGG | - | chr1.1:3366910-3366929 | None:intergenic | 40.0% | |
| GGGTGCTTGAACTTTGAATT+GGG | + | chr1.1:3367108-3367127 | MS.gene24383:intron | 40.0% | |
| GTTGTATGAAGTGGAAGTAG+AGG | + | chr1.1:3366785-3366804 | MS.gene24383:CDS | 40.0% | |
| TATCCTCTGATTCTTGCACA+CGG | + | chr1.1:3367861-3367880 | MS.gene24383:CDS | 40.0% | |
| TCTGTGGAATGCAAGATGTT+AGG | - | chr1.1:3366535-3366554 | None:intergenic | 40.0% | |
| TCTTGAAATCTTGTGGCAGT+AGG | + | chr1.1:3367664-3367683 | MS.gene24383:intron | 40.0% | |
| TGCTAACAAGGAAACGTTCT+CGG | - | chr1.1:3368113-3368132 | None:intergenic | 40.0% | |
| TGGAGGCTACAATACGAATA+TGG | - | chr1.1:3366911-3366930 | None:intergenic | 40.0% | |
| TGGGTGCTTGAACTTTGAAT+TGG | + | chr1.1:3367107-3367126 | MS.gene24383:intron | 40.0% | |
| TGGTCCTACAGCTTTCTAAA+AGG | - | chr1.1:3367266-3367285 | None:intergenic | 40.0% | |
| TTCTGCACGAGATAATCTGA+CGG | - | chr1.1:3366974-3366993 | None:intergenic | 40.0% | |
| TTGAATACACTCTGGGCATT+GGG | - | chr1.1:3367939-3367958 | None:intergenic | 40.0% | |
| TTTGAATACACTCTGGGCAT+TGG | - | chr1.1:3367940-3367959 | None:intergenic | 40.0% | |
| ! | CACTTTGCTATCATTGACGT+AGG | + | chr1.1:3365872-3365891 | MS.gene24383:intron | 40.0% |
| ! | GCTTGCAGAATTGATTCTAG+AGG | - | chr1.1:3365543-3365562 | None:intergenic | 40.0% |
| ! | GGTCCTACAGCTTTCTAAAA+GGG | - | chr1.1:3367265-3367284 | None:intergenic | 40.0% |
| !! | ATCTTTGGTTCCACTTTTGG+AGG | - | chr1.1:3365637-3365656 | None:intergenic | 40.0% |
| !! | GTATGGCTTTGGATCTAAGA+AGG | + | chr1.1:3366408-3366427 | MS.gene24383:CDS | 40.0% |
| !! | TACAAAGGGGAGCATTAACA+TGG | - | chr1.1:3366938-3366957 | None:intergenic | 40.0% |
| !! | TCACCCTTTTAGAAAGCTGT+AGG | + | chr1.1:3367259-3367278 | MS.gene24383:intron | 40.0% |
| !! | TGCATCTTTGGTTCCACTTT+TGG | - | chr1.1:3365640-3365659 | None:intergenic | 40.0% |
| !!! | TTGCAGCTGTTTTGACACTT+TGG | - | chr1.1:3367896-3367915 | None:intergenic | 40.0% |
| ACACACAGTTCAATTGGTGC+TGG | + | chr1.1:3367793-3367812 | MS.gene24383:CDS | 45.0% | |
| CAAAACCAAGACTTGGGACT+TGG | - | chr1.1:3367608-3367627 | None:intergenic | 45.0% | |
| CAACAACGACAATTGGGAAG+AGG | + | chr1.1:3364984-3365003 | MS.gene24383:CDS | 45.0% | |
| GCTCTTCTGATGTATGGCTT+TGG | + | chr1.1:3366397-3366416 | MS.gene24383:CDS | 45.0% | |
| GGAAGAGGAAGAAGAAGAAG+AGG | + | chr1.1:3364999-3365018 | MS.gene24383:CDS | 45.0% | |
| GGATTCGCTCTTCTGATGTA+TGG | + | chr1.1:3366391-3366410 | MS.gene24383:CDS | 45.0% | |
| GTGCAAGCAATCTTGACCAT+CGG | - | chr1.1:3368205-3368224 | None:intergenic | 45.0% | |
| GTTTCAGAGTCCCTTAATCC+TGG | - | chr1.1:3366855-3366874 | None:intergenic | 45.0% | |
| TGGCTCACACACAGTTCAAT+TGG | + | chr1.1:3367787-3367806 | MS.gene24383:CDS | 45.0% | |
| TTATCACTGGGTGTTCTCTG+AGG | + | chr1.1:3367183-3367202 | MS.gene24383:intron | 45.0% | |
| ! | GAAGTGCTTCGGTTGTAAGA+GGG | - | chr1.1:3368230-3368249 | None:intergenic | 45.0% |
| ! | GGCAGTTTGGGACAAGAATA+TGG | + | chr1.1:3367767-3367786 | MS.gene24383:intron | 45.0% |
| ! | GTGAAAGACAGGAAGTACGA+TGG | + | chr1.1:3367400-3367419 | MS.gene24383:intron | 45.0% |
| ! | TGAAGTGCTTCGGTTGTAAG+AGG | - | chr1.1:3368231-3368250 | None:intergenic | 45.0% |
| !! | GGGAGCATTAACATGGTCAA+TGG | - | chr1.1:3366931-3366950 | None:intergenic | 45.0% |
| !!! | AGCTGTTTTGACACTTTGGC+TGG | - | chr1.1:3367892-3367911 | None:intergenic | 45.0% |
| ACGAACTGGTCAAGACCAAG+AGG | + | chr1.1:3368175-3368194 | MS.gene24383:CDS | 50.0% | |
| ACGTTTCCTTGTTAGCAGCC+AGG | + | chr1.1:3368116-3368135 | MS.gene24383:CDS | 50.0% | |
| ACTGATCGGCATTCCTGGAA+GGG | - | chr1.1:3368073-3368092 | None:intergenic | 50.0% | |
| AGATCACTGATCGGCATTCC+TGG | - | chr1.1:3368078-3368097 | None:intergenic | 50.0% | |
| CTAAACACAAGGTTTCCGGC+CGG | + | chr1.1:3366721-3366740 | MS.gene24383:CDS | 50.0% | |
| CTGAATGGCTTCTCTCCCTA+AGG | + | chr1.1:3365295-3365314 | MS.gene24383:CDS | 50.0% | |
| CTTAGGGAGAGAAGCCATTC+AGG | - | chr1.1:3365297-3365316 | None:intergenic | 50.0% | |
| GAGTAACCTGGCTGCTAACA+AGG | - | chr1.1:3368125-3368144 | None:intergenic | 50.0% | |
| TTGACCATCGGAATGCCTCT+TGG | - | chr1.1:3368193-3368212 | None:intergenic | 50.0% | |
| !! | AAGACCAAGAGGCATTCCGA+TGG | + | chr1.1:3368186-3368205 | MS.gene24383:CDS | 50.0% |
| !! | ATTGAGTACTGGATGGCTGC+CGG | - | chr1.1:3366743-3366762 | None:intergenic | 50.0% |
| !! | CAGACGAGCGAGGTATTGTT+GGG | - | chr1.1:3366877-3366896 | None:intergenic | 50.0% |
| CACTGATCGGCATTCCTGGA+AGG | - | chr1.1:3368074-3368093 | None:intergenic | 55.0% | |
| CAGAAGAGCGAATCCGCATC+TGG | - | chr1.1:3366386-3366405 | None:intergenic | 55.0% | |
| CCAACAATACCTCGCTCGTC+TGG | + | chr1.1:3366875-3366894 | MS.gene24383:CDS | 55.0% | |
| CTGCCGTGTGCAAGAATCAG+AGG | - | chr1.1:3367867-3367886 | None:intergenic | 55.0% | |
| TGCTCCCAAGTCCCAAGTCT+TGG | + | chr1.1:3367600-3367619 | MS.gene24383:intron | 55.0% | |
| !! | CCAGACGAGCGAGGTATTGT+TGG | - | chr1.1:3366878-3366897 | None:intergenic | 55.0% |
| TACAAGAGGCCAGACGAGCG+AGG | - | chr1.1:3366887-3366906 | None:intergenic | 60.0% | |
| ! | AGTACTGGATGGCTGCCGGC+CGG | - | chr1.1:3366739-3366758 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 3364979 | 3368275 | 3364979 | ID=MS.gene24383 |
| chr1.1 | mRNA | 3364979 | 3368275 | 3364979 | ID=MS.gene24383.t1;Parent=MS.gene24383 |
| chr1.1 | exon | 3364979 | 3365122 | 3364979 | ID=MS.gene24383.t1.exon1;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3364979 | 3365122 | 3364979 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| chr1.1 | exon | 3365210 | 3365316 | 3365210 | ID=MS.gene24383.t1.exon2;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3365210 | 3365316 | 3365210 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| chr1.1 | exon | 3366387 | 3366519 | 3366387 | ID=MS.gene24383.t1.exon3;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3366387 | 3366519 | 3366387 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| chr1.1 | exon | 3366678 | 3366954 | 3366678 | ID=MS.gene24383.t1.exon4;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3366678 | 3366954 | 3366678 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| chr1.1 | exon | 3367772 | 3367996 | 3367772 | ID=MS.gene24383.t1.exon5;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3367772 | 3367996 | 3367772 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| chr1.1 | exon | 3368079 | 3368275 | 3368079 | ID=MS.gene24383.t1.exon6;Parent=MS.gene24383.t1 |
| chr1.1 | CDS | 3368079 | 3368275 | 3368079 | ID=cds.MS.gene24383.t1;Parent=MS.gene24383.t1 |
| Gene Sequence |
| Protein sequence |
