AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67108

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67108.t1 MTR_1g019770 97.507 361 8 1 1 360 1 361 0.0 729
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67108.t1 AT2G37560 66.762 349 110 2 18 360 14 362 2.48e-173 486
MS.gene67108.t1 AT2G37560 64.244 344 109 2 18 360 14 344 3.97e-170 478

Find 73 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAACATGAAAAGGAAAT+TGG 0.153499 1.3:+3839541 MS.gene67108:CDS
AACATGCCTTCAATCTTATA+TGG 0.207992 1.3:-3842139 None:intergenic
AAAGCTAAACGCAAGGTTTC+CGG 0.211000 1.3:+3841018 MS.gene67108:CDS
TATTCTGTAGTTGTCATTAA+TGG 0.229602 1.3:+3840770 MS.gene67108:CDS
TGGAGGCTACAATACGAATA+TGG 0.260047 1.3:-3841209 None:intergenic
GGCAGTTTGGGACAAGAATA+TGG 0.289237 1.3:+3842069 MS.gene67108:intron
ATATTGATGGACCAGGATTA+AGG 0.310552 1.3:+3841142 MS.gene67108:CDS
GATATCAGTAATCTTGTGTT+TGG 0.329500 1.3:-3839383 None:intergenic
CTTAGGGAGAGAAGCCATTC+AGG 0.346202 1.3:-3839595 None:intergenic
ATTCTGTAGTTGTCATTAAT+GGG 0.355542 1.3:+3840771 MS.gene67108:CDS
AGATGAACAACAACGACAAT+TGG 0.357101 1.3:+3839278 None:intergenic
GTAGTAATTCACAATATTGA+TGG 0.374954 1.3:+3841129 MS.gene67108:CDS
GCTCTTCTGATGTATGGCTT+TGG 0.385885 1.3:+3840698 MS.gene67108:CDS
ACATGCCTTCAATCTTATAT+GGG 0.410899 1.3:-3842138 None:intergenic
TCAGACCATTAACTTAAAAC+AGG 0.411589 1.3:+3840799 MS.gene67108:CDS
TTGAATACACTCTGGGCATT+GGG 0.413303 1.3:-3842238 None:intergenic
TACTCTGAATTCTCATTTGA+CGG 0.418075 1.3:+3842442 MS.gene67108:CDS
CCAGACGAGCGAGGTATTGT+TGG 0.423306 1.3:-3841176 None:intergenic
ATATTAGGTTCTGATAGCTT+TGG 0.426600 1.3:+3840972 MS.gene67108:intron
TGAAGTGCTTCGGTTGTAAG+AGG 0.428767 1.3:-3842530 None:intergenic
GGATTCGCTCTTCTGATGTA+TGG 0.431543 1.3:+3840692 MS.gene67108:CDS
TTTGAATACACTCTGGGCAT+TGG 0.433936 1.3:-3842239 None:intergenic
CTAAACATGAAAAGGAAATT+GGG 0.440776 1.3:+3839542 MS.gene67108:CDS
TGGCTCACACACAGTTCAAT+TGG 0.450005 1.3:+3842089 MS.gene67108:CDS
TATTGATGGACCAGGATTAA+GGG 0.455380 1.3:+3841143 MS.gene67108:CDS
CAGACGAGCGAGGTATTGTT+GGG 0.459713 1.3:-3841175 None:intergenic
TTTGCCCCATATAAGATTGA+AGG 0.461148 1.3:+3842133 MS.gene67108:CDS
GTTTCAGAGTCCCTTAATCC+TGG 0.463196 1.3:-3841153 None:intergenic
CCAACAATACCTCGCTCGTC+TGG 0.463209 1.3:+3841176 MS.gene67108:CDS
TATTCAACCTAAACATGAAA+AGG 0.467955 1.3:+3839534 MS.gene67108:CDS
GATGAACAACAACGACAATT+GGG 0.477909 1.3:+3839279 None:intergenic
TCTTACATTGTTGTATGAAG+TGG 0.478921 1.3:+3841077 MS.gene67108:CDS
TATCGATGTTGTTGATGAAC+AGG 0.486845 1.3:+3839402 MS.gene67108:CDS
ATCTTATATGGGGCAAATGT+AGG 0.486995 1.3:-3842127 None:intergenic
CTTGTGTTTGGATTTCTTCA+CGG 0.487363 1.3:-3839371 None:intergenic
GTATGGCTTTGGATCTAAGA+AGG 0.495801 1.3:+3840709 MS.gene67108:CDS
GGAGGCTACAATACGAATAT+GGG 0.507220 1.3:-3841208 None:intergenic
GAGTAACCTGGCTGCTAACA+AGG 0.508129 1.3:-3842424 None:intergenic
ACGTTTCCTTGTTAGCAGCC+AGG 0.508235 1.3:+3842418 MS.gene67108:CDS
TGCTAACAAGGAAACGTTCT+CGG 0.508303 1.3:-3842412 None:intergenic
TTGACCATCGGAATGCCTCT+TGG 0.512065 1.3:-3842492 None:intergenic
GGAAGAGGAAGAAGAAGAAG+AGG 0.513270 1.3:+3839300 MS.gene67108:CDS
CAAATTTCTCATCCCGATGA+AGG 0.522168 1.3:+3842277 MS.gene67108:CDS
GGGAGCATTAACATGGTCAA+TGG 0.522317 1.3:-3841229 None:intergenic
CTGAATGGCTTCTCTCCCTA+AGG 0.525332 1.3:+3839596 MS.gene67108:CDS
CAAGAACTTTGAATACACTC+TGG 0.530976 1.3:-3842246 None:intergenic
ATCTTCAATAGATTGAGTAC+TGG 0.534306 1.3:-3841052 None:intergenic
GGAATTTAAAGATCACGAAC+TGG 0.544269 1.3:+3842463 MS.gene67108:CDS
ATTGAGTACTGGATGGCTGC+CGG 0.547630 1.3:-3841041 None:intergenic
CAACAACGACAATTGGGAAG+AGG 0.569094 1.3:+3839285 MS.gene67108:CDS
AGTACTGGATGGCTGCCGGC+CGG 0.572496 1.3:-3841037 None:intergenic
ACACACAGTTCAATTGGTGC+TGG 0.584222 1.3:+3842095 MS.gene67108:CDS
GAAGTGCTTCGGTTGTAAGA+GGG 0.584506 1.3:-3842529 None:intergenic
ATTCACAATATTGATGGACC+AGG 0.597689 1.3:+3841135 MS.gene67108:CDS
ATGCTGCTATGTATCCTGAA+TGG 0.598898 1.3:+3839581 MS.gene67108:CDS
GTTGTATGAAGTGGAAGTAG+AGG 0.603568 1.3:+3841086 MS.gene67108:CDS
AATACGAATATGGGTACAAG+AGG 0.603954 1.3:-3841199 None:intergenic
AAGAACTTTGAATACACTCT+GGG 0.606048 1.3:-3842245 None:intergenic
TCAATAGATTGAGTACTGGA+TGG 0.610328 1.3:-3841048 None:intergenic
CATGCCTTCAATCTTATATG+GGG 0.613591 1.3:-3842137 None:intergenic
CTGCCGTGTGCAAGAATCAG+AGG 0.614174 1.3:-3842166 None:intergenic
GTGCAAGCAATCTTGACCAT+CGG 0.614626 1.3:-3842504 None:intergenic
AGCATTAACATGGTCAATGG+AGG 0.619176 1.3:-3841226 None:intergenic
TTTAGGTTGAATATGCAATG+AGG 0.624337 1.3:-3839524 None:intergenic
TACAAAGGGGAGCATTAACA+TGG 0.630431 1.3:-3841236 None:intergenic
AATGAGAATTCAGAGTAACC+TGG 0.635096 1.3:-3842436 None:intergenic
TCAAATGAAAGCTAAACGCA+AGG 0.651514 1.3:+3841011 MS.gene67108:CDS
TACAAGAGGCCAGACGAGCG+AGG 0.653242 1.3:-3841185 None:intergenic
TATCCTCTGATTCTTGCACA+CGG 0.655621 1.3:+3842163 MS.gene67108:CDS
AAGACCAAGAGGCATTCCGA+TGG 0.661202 1.3:+3842488 MS.gene67108:CDS
CTAAACGCAAGGTTTCCGGC+CGG 0.673224 1.3:+3841022 MS.gene67108:CDS
ACGAACTGGTCAAGACCAAG+AGG 0.697181 1.3:+3842477 MS.gene67108:CDS
ACTGAGTAGAGATCACTGAT+CGG 0.699405 1.3:-3842386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTATTAAAAATGATT+TGG + chr1.3:3841868-3841887 MS.gene67108:intron 10.0%
!! ATTTGATCAATTATTATTAT+TGG - chr1.3:3841799-3841818 None:intergenic 10.0%
!!! TTCAATAACATATTTTAAAA+TGG - chr1.3:3841439-3841458 None:intergenic 10.0%
!! AATAAACATAGAATTTGAAA+TGG + chr1.3:3840288-3840307 MS.gene67108:intron 15.0%
!!! TAAGTTTTTATCATTTTACT+TGG + chr1.3:3842300-3842319 MS.gene67108:intron 15.0%
!!! TTTTATTATGCAAAGAATTA+GGG - chr1.3:3840143-3840162 None:intergenic 15.0%
!!! TTTTTTCTTTTCAACATATT+AGG + chr1.3:3840957-3840976 MS.gene67108:intron 15.0%
!! AATGTAATGTGATTTATGTT+TGG + chr1.3:3839764-3839783 MS.gene67108:intron 20.0%
!! TGTACTTAAAATAGCTTATT+TGG - chr1.3:3840521-3840540 None:intergenic 20.0%
!! TTCAAATTCTATGTTTATTG+TGG - chr1.3:3840287-3840306 None:intergenic 20.0%
!!! CTTTTATTATGCAAAGAATT+AGG - chr1.3:3840144-3840163 None:intergenic 20.0%
!!! GATTTTGTAAAATTGATTCT+GGG + chr1.3:3839728-3839747 MS.gene67108:intron 20.0%
!!! TAAATTGTGTGTGAATTTTT+TGG - chr1.3:3840445-3840464 None:intergenic 20.0%
!!! TGATTTTGTAAAATTGATTC+TGG + chr1.3:3839727-3839746 MS.gene67108:intron 20.0%
!!! TTTTGATTTTGTATGTGATT+AGG + chr1.3:3839489-3839508 MS.gene67108:intron 20.0%
! AAACATGTAATATAGCTCTT+TGG + chr1.3:3840855-3840874 MS.gene67108:intron 25.0%
! AAGTATATGTGACTATATGA+AGG + chr1.3:3841998-3842017 MS.gene67108:intron 25.0%
! ATTCTGTAGTTGTCATTAAT+GGG + chr1.3:3840771-3840790 MS.gene67108:CDS 25.0%
! CCATATCTAAAGATGAAATA+TGG - chr1.3:3841334-3841353 None:intergenic 25.0%
! CCATATTTCATCTTTAGATA+TGG + chr1.3:3841331-3841350 MS.gene67108:intron 25.0%
! CTAAACATGAAAAGGAAATT+GGG + chr1.3:3839542-3839561 MS.gene67108:CDS 25.0%
! GTAGTAATTCACAATATTGA+TGG + chr1.3:3841129-3841148 MS.gene67108:CDS 25.0%
! TATTCAACCTAAACATGAAA+AGG + chr1.3:3839534-3839553 MS.gene67108:CDS 25.0%
! TATTCTGTAGTTGTCATTAA+TGG + chr1.3:3840770-3840789 MS.gene67108:CDS 25.0%
! TGATAAAAACTTACCTTCAT+CGG - chr1.3:3842293-3842312 None:intergenic 25.0%
! TTATACAGAGCTAAAAACTT+AGG - chr1.3:3841517-3841536 None:intergenic 25.0%
!! AACATAGAATTTGAAATGGA+TGG + chr1.3:3840292-3840311 MS.gene67108:intron 25.0%
!! ACATAGAATTTGAAATGGAT+GGG + chr1.3:3840293-3840312 MS.gene67108:intron 25.0%
!! TTAACAGTTACATCTTCTTT+TGG + chr1.3:3842048-3842067 MS.gene67108:intron 25.0%
!!! AAGAAACTATTTTCTAGCAA+AGG + chr1.3:3839336-3839355 MS.gene67108:CDS 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr1.3:3839818-3839837 None:intergenic 25.0%
!!! ATCTGTTTGAGATTTCTTTT+GGG + chr1.3:3841389-3841408 MS.gene67108:intron 25.0%
!!! CTTGGTTTTGATAGATATAA+TGG + chr1.3:3841920-3841939 MS.gene67108:intron 25.0%
!!! GTGCATATGACATAATTTTT+TGG - chr1.3:3839984-3840003 None:intergenic 25.0%
!!! GTGCATTTTAAGTTTTACAT+TGG + chr1.3:3840629-3840648 MS.gene67108:intron 25.0%
!!! GTTCTAAAGTAAGAAGATAA+AGG - chr1.3:3840241-3840260 None:intergenic 25.0%
!!! TATCTGTTTGAGATTTCTTT+TGG + chr1.3:3841388-3841407 MS.gene67108:intron 25.0%
!!! TATTTTTGCTGTTTATCACT+GGG + chr1.3:3841472-3841491 MS.gene67108:intron 25.0%
!!! TGTGTGTGAATTTTTTGTAA+GGG - chr1.3:3840440-3840459 None:intergenic 25.0%
!!! TTATCTTCTTACTTTAGAAC+CGG + chr1.3:3840241-3840260 MS.gene67108:intron 25.0%
!!! TTATTTTTGCTGTTTATCAC+TGG + chr1.3:3841471-3841490 MS.gene67108:intron 25.0%
!!! TTGTGTGTGAATTTTTTGTA+AGG - chr1.3:3840441-3840460 None:intergenic 25.0%
AACATGCCTTCAATCTTATA+TGG - chr1.3:3842142-3842161 None:intergenic 30.0%
AACTCATATTCGCTTATAAG+TGG + chr1.3:3840042-3840061 MS.gene67108:intron 30.0%
AAGAACTTTGAATACACTCT+GGG - chr1.3:3842248-3842267 None:intergenic 30.0%
AATAGTTAGAATAGCAAGTC+CGG - chr1.3:3840263-3840282 None:intergenic 30.0%
AATTTCTTAGTGAAGGATCT+CGG + chr1.3:3840911-3840930 MS.gene67108:intron 30.0%
ACAGATGAATTTCTTAGTGA+AGG + chr1.3:3840904-3840923 MS.gene67108:intron 30.0%
ACATGCCTTCAATCTTATAT+GGG - chr1.3:3842141-3842160 None:intergenic 30.0%
ACTCATATTCGCTTATAAGT+GGG + chr1.3:3840043-3840062 MS.gene67108:intron 30.0%
AGTGAAAAGTTAAGGCAAAA+TGG + chr1.3:3840879-3840898 MS.gene67108:intron 30.0%
ATCTATCAAAACCAAGACTT+GGG - chr1.3:3841916-3841935 None:intergenic 30.0%
ATCTTCAATAGATTGAGTAC+TGG - chr1.3:3841055-3841074 None:intergenic 30.0%
ATGTCGTCTATAAGATAGTT+TGG + chr1.3:3841757-3841776 MS.gene67108:intron 30.0%
CAGTAACTAAACTTACAAAG+GGG - chr1.3:3841252-3841271 None:intergenic 30.0%
CCTAAACATGAAAAGGAAAT+TGG + chr1.3:3839541-3839560 MS.gene67108:CDS 30.0%
CTCAAGACGAAGAAAATATT+TGG - chr1.3:3841587-3841606 None:intergenic 30.0%
CTGTTAAGAAAAATAGTCAG+AGG - chr1.3:3842035-3842054 None:intergenic 30.0%
GATAAAAACTTACCTTCATC+GGG - chr1.3:3842292-3842311 None:intergenic 30.0%
GATATCAGTAATCTTGTGTT+TGG - chr1.3:3839386-3839405 None:intergenic 30.0%
GATGGCATATATTAAGCAAA+AGG + chr1.3:3841720-3841739 MS.gene67108:intron 30.0%
GCAGTAACTAAACTTACAAA+GGG - chr1.3:3841253-3841272 None:intergenic 30.0%
TACTCTGAATTCTCATTTGA+CGG + chr1.3:3842442-3842461 MS.gene67108:CDS 30.0%
TATCTATCAAAACCAAGACT+TGG - chr1.3:3841917-3841936 None:intergenic 30.0%
TCAGACCATTAACTTAAAAC+AGG + chr1.3:3840799-3840818 MS.gene67108:CDS 30.0%
TCTTACATTGTTGTATGAAG+TGG + chr1.3:3841077-3841096 MS.gene67108:CDS 30.0%
! AGCTATATTACATGTTTCTG+TGG - chr1.3:3840852-3840871 None:intergenic 30.0%
! ATATTAGGTTCTGATAGCTT+TGG + chr1.3:3840972-3840991 MS.gene67108:intron 30.0%
! ATGCTGTTCTTTTCATATGT+AGG + chr1.3:3842330-3842349 MS.gene67108:intron 30.0%
! CCAATTTCCTTTTCATGTTT+AGG - chr1.3:3839544-3839563 None:intergenic 30.0%
!! TCTTTGGTAGTGAAAAGTTA+AGG + chr1.3:3840871-3840890 MS.gene67108:intron 30.0%
!! TTTAGGTTGAATATGCAATG+AGG - chr1.3:3839527-3839546 None:intergenic 30.0%
!!! AGTTTTTAGCTCTGTATAAC+TGG + chr1.3:3841518-3841537 MS.gene67108:intron 30.0%
!!! GCAAACCTGTTTTAAGTTAA+TGG - chr1.3:3840807-3840826 None:intergenic 30.0%
!!! TAGAACTTTTTGAAGTGCTT+CGG - chr1.3:3842543-3842562 None:intergenic 30.0%
AAACGACTCTTGAAATCTTG+TGG + chr1.3:3841959-3841978 MS.gene67108:intron 35.0%
AACTGGACAATAGGACTAAA+TGG + chr1.3:3841535-3841554 MS.gene67108:intron 35.0%
AAGTATGTTATGCGTGTGTT+TGG + chr1.3:3839686-3839705 MS.gene67108:intron 35.0%
AATACGAATATGGGTACAAG+AGG - chr1.3:3841202-3841221 None:intergenic 35.0%
AATGAGAATTCAGAGTAACC+TGG - chr1.3:3842439-3842458 None:intergenic 35.0%
ACAAACACTTACTGCATCTT+TGG - chr1.3:3839953-3839972 None:intergenic 35.0%
ATAGCACATACTTCTTACTC+CGG - chr1.3:3840337-3840356 None:intergenic 35.0%
ATCATTGACGTAGGCATAAT+TGG + chr1.3:3840182-3840201 MS.gene67108:intron 35.0%
ATCTTATATGGGGCAAATGT+AGG - chr1.3:3842130-3842149 None:intergenic 35.0%
ATGGATGGGAAATGAAATCA+AGG + chr1.3:3840307-3840326 MS.gene67108:intron 35.0%
ATTAAGCAAAAGGTGGTACT+TGG + chr1.3:3841730-3841749 MS.gene67108:intron 35.0%
ATTTCTTAGTGAAGGATCTC+GGG + chr1.3:3840912-3840931 MS.gene67108:intron 35.0%
CAAGAACTTTGAATACACTC+TGG - chr1.3:3842249-3842268 None:intergenic 35.0%
CATGACTAATCGTTATGTTC+TGG + chr1.3:3840213-3840232 MS.gene67108:intron 35.0%
CATGCCTTCAATCTTATATG+GGG - chr1.3:3842140-3842159 None:intergenic 35.0%
CGTCTATAAGATAGTTTGGT+CGG + chr1.3:3841761-3841780 MS.gene67108:intron 35.0%
CTTGTGTTTGGATTTCTTCA+CGG - chr1.3:3839374-3839393 None:intergenic 35.0%
GAAAAGAGAGTGATACCTTA+GGG - chr1.3:3839614-3839633 None:intergenic 35.0%
GAAATGAAATCAAGGTGAAC+CGG + chr1.3:3840315-3840334 MS.gene67108:intron 35.0%
GCAAGTTGTTAAAGTTGAGA+TGG + chr1.3:3840082-3840101 MS.gene67108:intron 35.0%
GGAAGGGAAAAAATACAGTT+AGG - chr1.3:3842359-3842378 None:intergenic 35.0%
GGAATTTAAAGATCACGAAC+TGG + chr1.3:3842463-3842482 MS.gene67108:CDS 35.0%
GGCAGTAACTAAACTTACAA+AGG - chr1.3:3841254-3841273 None:intergenic 35.0%
GGCATATATTAAGCAAAAGG+TGG + chr1.3:3841723-3841742 MS.gene67108:intron 35.0%
GGCTCATTCAAAAAAAGTGA+AGG - chr1.3:3840666-3840685 None:intergenic 35.0%
GTCTATAAGATAGTTTGGTC+GGG + chr1.3:3841762-3841781 MS.gene67108:intron 35.0%
TAACAACTTGCAATGCTAGA+GGG - chr1.3:3840073-3840092 None:intergenic 35.0%
TCAAATGAAAGCTAAACGCA+AGG + chr1.3:3841011-3841030 MS.gene67108:CDS 35.0%
TCTGCTTTACAGTTGTTTGT+AGG + chr1.3:3841641-3841660 MS.gene67108:intron 35.0%
TGAAAAGAGAGTGATACCTT+AGG - chr1.3:3839615-3839634 None:intergenic 35.0%
TGACTACATTTGTGAAAGAC+AGG + chr1.3:3841691-3841710 MS.gene67108:intron 35.0%
TTAACAACTTGCAATGCTAG+AGG - chr1.3:3840074-3840093 None:intergenic 35.0%
TTTGCCCCATATAAGATTGA+AGG + chr1.3:3842133-3842152 MS.gene67108:CDS 35.0%
! ACATCTTCTTTTGGCAGTTT+GGG + chr1.3:3842057-3842076 MS.gene67108:intron 35.0%
! AGAAGTATGTGCTATGTAAG+CGG + chr1.3:3840342-3840361 MS.gene67108:intron 35.0%
! ATATTGATGGACCAGGATTA+AGG + chr1.3:3841142-3841161 MS.gene67108:CDS 35.0%
! ATTCACAATATTGATGGACC+AGG + chr1.3:3841135-3841154 MS.gene67108:CDS 35.0%
! GGTTCTACAGCTTTCTAAAA+GGG - chr1.3:3841566-3841585 None:intergenic 35.0%
! GTATGTATCTAGAGTGTGTT+TGG + chr1.3:3839657-3839676 MS.gene67108:intron 35.0%
! TACATCTTCTTTTGGCAGTT+TGG + chr1.3:3842056-3842075 MS.gene67108:intron 35.0%
! TATCGATGTTGTTGATGAAC+AGG + chr1.3:3839402-3839421 MS.gene67108:CDS 35.0%
! TATTGATGGACCAGGATTAA+GGG + chr1.3:3841143-3841162 MS.gene67108:CDS 35.0%
! TGGTTCTACAGCTTTCTAAA+AGG - chr1.3:3841567-3841586 None:intergenic 35.0%
!! TCAATAGATTGAGTACTGGA+TGG - chr1.3:3841051-3841070 None:intergenic 35.0%
!!! AACTGTATTTTTTCCCTTCC+AGG + chr1.3:3842359-3842378 MS.gene67108:intron 35.0%
!!! AATTTTGACTCCTCCAAAAG+TGG + chr1.3:3839925-3839944 MS.gene67108:intron 35.0%
!!! TTTTTTGAATGAGCCAGATG+CGG + chr1.3:3840671-3840690 MS.gene67108:intron 35.0%
AAAACCAAGACTTGGGACTT+GGG - chr1.3:3841909-3841928 None:intergenic 40.0%
AAAGCTAAACGCAAGGTTTC+CGG + chr1.3:3841018-3841037 MS.gene67108:CDS 40.0%
ACTGAGTAGAGATCACTGAT+CGG - chr1.3:3842389-3842408 None:intergenic 40.0%
AGCATTAACATGGTCAATGG+AGG - chr1.3:3841229-3841248 None:intergenic 40.0%
ATGCTGCTATGTATCCTGAA+TGG + chr1.3:3839581-3839600 MS.gene67108:CDS 40.0%
CAAATTTCTCATCCCGATGA+AGG + chr1.3:3842277-3842296 MS.gene67108:CDS 40.0%
CTACGTCAATGATAGCAAAG+TGG - chr1.3:3840175-3840194 None:intergenic 40.0%
CTGTGGAATGCAAGATGTTA+GGG - chr1.3:3840835-3840854 None:intergenic 40.0%
CTTGAAATCTTGTGGCAGTA+GGG + chr1.3:3841967-3841986 MS.gene67108:intron 40.0%
GCTCTGTATAACTGGACAAT+AGG + chr1.3:3841526-3841545 MS.gene67108:intron 40.0%
GGAGGCTACAATACGAATAT+GGG - chr1.3:3841211-3841230 None:intergenic 40.0%
GGGTGCTTGAACTTTGAATT+GGG + chr1.3:3841409-3841428 MS.gene67108:intron 40.0%
GTTGTATGAAGTGGAAGTAG+AGG + chr1.3:3841086-3841105 MS.gene67108:CDS 40.0%
TATCCTCTGATTCTTGCACA+CGG + chr1.3:3842163-3842182 MS.gene67108:CDS 40.0%
TCTGTGGAATGCAAGATGTT+AGG - chr1.3:3840836-3840855 None:intergenic 40.0%
TCTTGAAATCTTGTGGCAGT+AGG + chr1.3:3841966-3841985 MS.gene67108:intron 40.0%
TGCTAACAAGGAAACGTTCT+CGG - chr1.3:3842415-3842434 None:intergenic 40.0%
TGGAGGCTACAATACGAATA+TGG - chr1.3:3841212-3841231 None:intergenic 40.0%
TGGGTGCTTGAACTTTGAAT+TGG + chr1.3:3841408-3841427 MS.gene67108:intron 40.0%
TTCTGCACGAGATAATCTGA+CGG - chr1.3:3841275-3841294 None:intergenic 40.0%
TTGAATACACTCTGGGCATT+GGG - chr1.3:3842241-3842260 None:intergenic 40.0%
TTTGAATACACTCTGGGCAT+TGG - chr1.3:3842242-3842261 None:intergenic 40.0%
! CACTTTGCTATCATTGACGT+AGG + chr1.3:3840173-3840192 MS.gene67108:intron 40.0%
! GCTTGCAGAATTGATTCTAG+AGG - chr1.3:3839844-3839863 None:intergenic 40.0%
!! ATCTTTGGTTCCACTTTTGG+AGG - chr1.3:3839938-3839957 None:intergenic 40.0%
!! GTATGGCTTTGGATCTAAGA+AGG + chr1.3:3840709-3840728 MS.gene67108:CDS 40.0%
!! TACAAAGGGGAGCATTAACA+TGG - chr1.3:3841239-3841258 None:intergenic 40.0%
!! TGCATCTTTGGTTCCACTTT+TGG - chr1.3:3839941-3839960 None:intergenic 40.0%
!!! TTGCAGCTGTTTTGACACTT+TGG - chr1.3:3842198-3842217 None:intergenic 40.0%
ACACACAGTTCAATTGGTGC+TGG + chr1.3:3842095-3842114 MS.gene67108:CDS 45.0%
CAAAACCAAGACTTGGGACT+TGG - chr1.3:3841910-3841929 None:intergenic 45.0%
CAACAACGACAATTGGGAAG+AGG + chr1.3:3839285-3839304 MS.gene67108:CDS 45.0%
GCTCTTCTGATGTATGGCTT+TGG + chr1.3:3840698-3840717 MS.gene67108:CDS 45.0%
GGAAGAGGAAGAAGAAGAAG+AGG + chr1.3:3839300-3839319 MS.gene67108:CDS 45.0%
GGATTCGCTCTTCTGATGTA+TGG + chr1.3:3840692-3840711 MS.gene67108:CDS 45.0%
GTGCAAGCAATCTTGACCAT+CGG - chr1.3:3842507-3842526 None:intergenic 45.0%
GTTTCAGAGTCCCTTAATCC+TGG - chr1.3:3841156-3841175 None:intergenic 45.0%
TGGCTCACACACAGTTCAAT+TGG + chr1.3:3842089-3842108 MS.gene67108:CDS 45.0%
TTATCACTGGGTGTTCTCTG+AGG + chr1.3:3841484-3841503 MS.gene67108:intron 45.0%
! GAAGTGCTTCGGTTGTAAGA+GGG - chr1.3:3842532-3842551 None:intergenic 45.0%
! GGCAGTTTGGGACAAGAATA+TGG + chr1.3:3842069-3842088 MS.gene67108:intron 45.0%
! GTGAAAGACAGGAAGTACGA+TGG + chr1.3:3841702-3841721 MS.gene67108:intron 45.0%
! TGAAGTGCTTCGGTTGTAAG+AGG - chr1.3:3842533-3842552 None:intergenic 45.0%
!! GGGAGCATTAACATGGTCAA+TGG - chr1.3:3841232-3841251 None:intergenic 45.0%
!!! AGCTGTTTTGACACTTTGGC+TGG - chr1.3:3842194-3842213 None:intergenic 45.0%
ACGAACTGGTCAAGACCAAG+AGG + chr1.3:3842477-3842496 MS.gene67108:CDS 50.0%
ACGTTTCCTTGTTAGCAGCC+AGG + chr1.3:3842418-3842437 MS.gene67108:CDS 50.0%
ACTGATCGGCATTCCTGGAA+GGG - chr1.3:3842375-3842394 None:intergenic 50.0%
AGATCACTGATCGGCATTCC+TGG - chr1.3:3842380-3842399 None:intergenic 50.0%
CTGAATGGCTTCTCTCCCTA+AGG + chr1.3:3839596-3839615 MS.gene67108:CDS 50.0%
CTTAGGGAGAGAAGCCATTC+AGG - chr1.3:3839598-3839617 None:intergenic 50.0%
GAGTAACCTGGCTGCTAACA+AGG - chr1.3:3842427-3842446 None:intergenic 50.0%
TTGACCATCGGAATGCCTCT+TGG - chr1.3:3842495-3842514 None:intergenic 50.0%
!! AAGACCAAGAGGCATTCCGA+TGG + chr1.3:3842488-3842507 MS.gene67108:CDS 50.0%
!! ATTGAGTACTGGATGGCTGC+CGG - chr1.3:3841044-3841063 None:intergenic 50.0%
!! CAGACGAGCGAGGTATTGTT+GGG - chr1.3:3841178-3841197 None:intergenic 50.0%
CACTGATCGGCATTCCTGGA+AGG - chr1.3:3842376-3842395 None:intergenic 55.0%
CAGAAGAGCGAATCCGCATC+TGG - chr1.3:3840687-3840706 None:intergenic 55.0%
CCAACAATACCTCGCTCGTC+TGG + chr1.3:3841176-3841195 MS.gene67108:CDS 55.0%
CTAAACGCAAGGTTTCCGGC+CGG + chr1.3:3841022-3841041 MS.gene67108:CDS 55.0%
CTGCCGTGTGCAAGAATCAG+AGG - chr1.3:3842169-3842188 None:intergenic 55.0%
TGCTCCCAAGTCCCAAGTCT+TGG + chr1.3:3841902-3841921 MS.gene67108:intron 55.0%
!! CCAGACGAGCGAGGTATTGT+TGG - chr1.3:3841179-3841198 None:intergenic 55.0%
TACAAGAGGCCAGACGAGCG+AGG - chr1.3:3841188-3841207 None:intergenic 60.0%
! AGTACTGGATGGCTGCCGGC+CGG - chr1.3:3841040-3841059 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 3839280 3842577 3839280 ID=MS.gene67108
chr1.3 mRNA 3839280 3842577 3839280 ID=MS.gene67108.t1;Parent=MS.gene67108
chr1.3 exon 3839280 3839423 3839280 ID=MS.gene67108.t1.exon1;Parent=MS.gene67108.t1
chr1.3 CDS 3839280 3839423 3839280 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
chr1.3 exon 3839511 3839617 3839511 ID=MS.gene67108.t1.exon2;Parent=MS.gene67108.t1
chr1.3 CDS 3839511 3839617 3839511 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
chr1.3 exon 3840688 3840820 3840688 ID=MS.gene67108.t1.exon3;Parent=MS.gene67108.t1
chr1.3 CDS 3840688 3840820 3840688 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
chr1.3 exon 3840979 3841255 3840979 ID=MS.gene67108.t1.exon4;Parent=MS.gene67108.t1
chr1.3 CDS 3840979 3841255 3840979 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
chr1.3 exon 3842074 3842298 3842074 ID=MS.gene67108.t1.exon5;Parent=MS.gene67108.t1
chr1.3 CDS 3842074 3842298 3842074 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
chr1.3 exon 3842381 3842577 3842381 ID=MS.gene67108.t1.exon6;Parent=MS.gene67108.t1
chr1.3 CDS 3842381 3842577 3842381 ID=cds.MS.gene67108.t1;Parent=MS.gene67108.t1
Gene Sequence

>MS.gene67108

ATGAACAACAACGACAATTGGGAAGAGGAAGAAGAAGAAGAGGATCTAGAATTCTCAAGAAACTATTTTCTAGCAAAGGAATTAACATCTTCCGTGAAGAAATCCAAACACAAGATTACTGATATCGATGTTGTTGATGAACAGGTAAGTATCAATTGATGAATGAAAATGAACTTTTTTATTCTATTGAATTTCTGCTTATACTTAGTTTTTGATTTTGTATGTGATTAGGAACTTAGAGAAGCCTCATTGCATATTCAACCTAAACATGAAAAGGAAATTGGGCTTTTAATCGATTCGTATGCTGCTATGTATCCTGAATGGCTTCTCTCCCTAAGGTATCACTCTCTTTTCATTCTTATCATTCAAATAATAGTGTATGTATCTAGAGTGTGTTTGGAGTGAGAAGTATGTTATGCGTGTGTTTGGTTATGCGTTAACGTAAATTGATTTTGTAAAATTGATTCTGGGTAAAAGTGAGTTGAATGTAATGTGATTTATGTTTGGATGTATTGATGTTAAAGTGAAAAATTAACCAAACATGTCAAAATCAATTCTACACCTCTAGAATCAATTCTGCAAGCGAAATCAATTCTTCTTTAAATCAACCAAACATGTCAAAATCAATTCTACATCTCTAGAATCAATTTTGACTCCTCCAAAAGTGGAACCAAAGATGCAGTAAGTGTTTGTTTAACATACCAAAAAATTATGTCATATGCACTTGAATGTTTGTTCGTAATACTTGTTTCAATTGAGTATAACTCATATTCGCTTATAAGTGGGCAGACCCTCTAGCATTGCAAGTTGTTAAAGTTGAGATGGACAGTAGTATTTAAATAAAGCTTTGTACTTTGTAACCCTAATTCTTTGCATAATAAAAGTGCAATAGCCACTTTGCTATCATTGACGTAGGCATAATTGGCTGAACTTCATGACTAATCGTTATGTTCTGGTGCCTTTATCTTCTTACTTTAGAACCGGACTTGCTATTCTAACTATTTCCACAATAAACATAGAATTTGAAATGGATGGGAAATGAAATCAAGGTGAACCGGAGTAAGAAGTATGTGCTATGTAAGCGGTCTTCATAAGCTATCTGAGAATTTGTTAAAATAAATTATAAACAACTTATGTACATAAACTATTTTTGTATACCCTTACAAAAAATTCACACACAATTTATATCATGAGATATGTCCAAAAAATTCACACACAATTTATATCATGAGATATGTCCAAATAAGCTATTTTAAGTACAATTTTATACGCTTTCATTGCTGTATAATGTATTAATGTATTATAGCTTGTTGAATTTGATTTGTATTTTTAAAAAGTGACTTTAAGATGTGCATTTTAAGTTTTACATTGGAATTATTGTGACCTTCACTTTTTTTGAATGAGCCAGATGCGGATTCGCTCTTCTGATGTATGGCTTTGGATCTAAGAAGGCTTTGATTGAAGACTTTGCTTCGAAGACATTGACAGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAACAGGTTTGCATTCTCCCTAACATCTTGCATTCCACAGAAACATGTAATATAGCTCTTTGGTAGTGAAAAGTTAAGGCAAAATGGAGACAGATGAATTTCTTAGTGAAGGATCTCGGGTTTTCGATGCTCTAAGCTTTAGTTTTTTCTTTTCAACATATTAGGTTCTGATAGCTTTGGCTGAACTTCTATGTGATCAAATGAAAGCTAAACGCAAGGTTTCCGGCCGGCAGCCATCCAGTACTCAATCTATTGAAGATCTTCTTACATTGTTGTATGAAGTGGAAGTAGAGGACAGCAATTCTTTCGTTTGTGTAGTAATTCACAATATTGATGGACCAGGATTAAGGGACTCTGAAACCCAACAATACCTCGCTCGTCTGGCCTCTTGTACCCATATTCGTATTGTAGCCTCCATTGACCATGTTAATGCTCCCCTTTGTAAGTTTAGTTACTGCCGTCAGATTATCTCGTGCAGAATATATTTCTTGTAAATTGTTAGTGTAGTCAATATTGCCATATTTCATCTTTAGATATGGCTTGAAGTTATGTTTTCTTGAATTGTTCTATTATTATCTGTTTGAGATTTCTTTTGGGTGCTTGAACTTTGAATTGGGAATGCCATTTTAAAATATGTTATTGAATTTATTTATTTATTATTTTTGCTGTTTATCACTGGGTGTTCTCTGAGGATCTGATCCTAAGTTTTTAGCTCTGTATAACTGGACAATAGGACTAAATGGCATCACCCTTTTAGAAAGCTGTAGAACCAAATATTTTCTTCGTCTTGAGACTTAAAGTTGCTATCATATTATTTATTTGAACTTCTGCTTTACAGTTGTTTGTAGGAAAGAAATGAATATATAAGATCAGAACTGACTACATTTGTGAAAGACAGGAAGTACGATGGCATATATTAAGCAAAAGGTGGTACTTGGTAGAATGTCGTCTATAAGATAGTTTGGTCGGGCGAGTAAAAGACCAATAATAATAATTGATCAAATGCGAAGTAGCTTACAATGTCAGATGCTGAATATGATTAAGAAAAACAGCAAAAACTATTAAAAATGATTTGGATCTAAATGCTTGCTCCCAAGTCCCAAGTCTTGGTTTTGATAGATATAATGGCATCATTTAATCAGAGAAACGACTCTTGAAATCTTGTGGCAGTAGGGTATAAAATAAGTATATGTGACTATATGAAGGTTTTTTTGTTGCCTCTGACTATTTTTCTTAACAGTTACATCTTCTTTTGGCAGTTTGGGACAAGAATATGGCTCACACACAGTTCAATTGGTGCTGGCATCATGTTCCTACATTTGCCCCATATAAGATTGAAGGCATGTTTTATCCTCTGATTCTTGCACACGGCAGTGCCAGCCAAAGTGTCAAAACAGCTGCAATAGTTTTGCAAAGTTTGACACCCAATGCCCAGAGTGTATTCAAAGTTCTTGCTGAATATCAAATTTCTCATCCCGATGAAGGTAAGTTTTTATCATTTTACTTGGATATCATATGCTGTTCTTTTCATATGTAGGTGTCCTAACTGTATTTTTTCCCTTCCAGGAATGCCGATCAGTGATCTCTACTCAGTCTGCCGAGAACGTTTCCTTGTTAGCAGCCAGGTTACTCTGAATTCTCATTTGACGGAATTTAAAGATCACGAACTGGTCAAGACCAAGAGGCATTCCGATGGTCAAGATTGCTTGCACATCCCTCTTACAACCGAAGCACTTCAAAAAGTTCTACTTGAGATCAGTTAG
Protein sequence

>MS.gene67108.t1

MNNNDNWEEEEEEEDLEFSRNYFLAKELTSSVKKSKHKITDIDVVDEQELREASLHIQPKHEKEIGLLIDSYAAMYPEWLLSLRCGFALLMYGFGSKKALIEDFASKTLTEYSVVVINGYLQTINLKQVLIALAELLCDQMKAKRKVSGRQPSSTQSIEDLLTLLYEVEVEDSNSFVCVVIHNIDGPGLRDSETQQYLARLASCTHIRIVASIDHVNAPLFWDKNMAHTQFNWCWHHVPTFAPYKIEGMFYPLILAHGSASQSVKTAAIVLQSLTPNAQSVFKVLAEYQISHPDEGMPISDLYSVCRERFLVSSQVTLNSHLTEFKDHELVKTKRHSDGQDCLHIPLTTEALQKVLLEIS