Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028323.t1 | NP_001275136.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-68 | 266.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028323.t1 | P42798 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.6e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028323.t1 | A0A1U7YEG5 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-68 | 266.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028323 | MS.gene041458 | PPI |
| MS.gene028323 | MS.gene35135 | PPI |
| MS.gene028323 | MS.gene023130 | PPI |
| MS.gene55887 | MS.gene028323 | PPI |
| MS.gene35135 | MS.gene028323 | PPI |
| MS.gene028323 | MS.gene06172 | PPI |
| MS.gene028323 | MS.gene58227 | PPI |
| MS.gene028323 | MS.gene55887 | PPI |
| MS.gene028323 | MS.gene36468 | PPI |
| MS.gene028323 | MS.gene20156 | PPI |
| MS.gene028323 | MS.gene58719 | PPI |
| MS.gene028323 | MS.gene036595 | PPI |
| MS.gene028323 | MS.gene049026 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028323.t1 | MTR_4g117470 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.05e-93 | 266 |
| MS.gene028323.t1 | MTR_4g094598 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene028323.t1 | MTR_1g105415 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene028323.t1 | MTR_8g101910 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 1.82e-45 | 144 |
| MS.gene028323.t1 | MTR_8g101910 | 49.474 | 95 | 48 | 0 | 6 | 100 | 5 | 99 | 1.72e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028323.t1 | AT5G59850 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene028323.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene028323.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene028323.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene028323.t1 | AT3G46040 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 4.03e-92 | 262 |
| MS.gene028323.t1 | AT2G39590 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.30e-87 | 249 |
| MS.gene028323.t1 | AT4G29430 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 2.98e-47 | 149 |
| MS.gene028323.t1 | AT2G19720 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 3.11e-45 | 144 |
Find 28 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTGGTTATAGGATATAT+TGG | 0.379495 | 4.2:-17680020 | MS.gene028323:intron |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 4.2:-17678530 | MS.gene028323:CDS |
| ATTAGTCCTCGTTTCGATGT+TGG | 0.460967 | 4.2:-17679918 | MS.gene028323:CDS |
| AAAATTGTTGTGGAATTGAA+TGG | 0.479932 | 4.2:-17679963 | MS.gene028323:CDS |
| TACGTTGATGATCACAGGTC+TGG | 0.486815 | 4.2:-17679987 | MS.gene028323:CDS |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 4.2:-17678484 | MS.gene028323:CDS |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 4.2:-17679887 | MS.gene028323:CDS |
| AGGATGGCCTAATCATAACT+TGG | 0.529437 | 4.2:+17680171 | None:intergenic |
| GGAAGCGCCAAGTTATGATT+AGG | 0.530843 | 4.2:-17680178 | MS.gene028323:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 4.2:-17678538 | MS.gene028323:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 4.2:-17678485 | MS.gene028323:CDS |
| TCGAATACGTTGATGATCAC+AGG | 0.543527 | 4.2:-17679992 | MS.gene028323:CDS |
| GCTAGGAGAAAGAATGTTGG+TGG | 0.567141 | 4.2:-17678496 | MS.gene028323:CDS |
| TTGTAACAGCAAATATGGTG+AGG | 0.575157 | 4.2:-17680253 | None:intergenic |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 4.2:-17679868 | MS.gene028323:intron |
| TGTAACAGCAAATATGGTGA+GGG | 0.583163 | 4.2:-17680252 | None:intergenic |
| GAGGCTAGGAGAAAGAATGT+TGG | 0.584494 | 4.2:-17678499 | MS.gene028323:CDS |
| TCATGGATCATGAAGAGGCT+AGG | 0.585008 | 4.2:-17678513 | MS.gene028323:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.619087 | 4.2:-17680200 | MS.gene028323:CDS |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.620427 | 4.2:-17679900 | MS.gene028323:CDS |
| CTTATCGTCATGCAAAAGCA+TGG | 0.625917 | 4.2:-17680128 | MS.gene028323:intron |
| CAGGTCTGGCAAAATTGTTG+TGG | 0.629911 | 4.2:-17679973 | MS.gene028323:CDS |
| AATGGAAGATTGAATAAGTG+TGG | 0.630140 | 4.2:-17679945 | MS.gene028323:CDS |
| TGGTATCATGGATCATGAAG+AGG | 0.639197 | 4.2:-17678518 | MS.gene028323:CDS |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 4.2:+17678525 | None:intergenic |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 4.2:-17679896 | MS.gene028323:CDS |
| TGTACAATGCTGAGAAACGT+GGG | 0.665211 | 4.2:-17680199 | MS.gene028323:CDS |
| TTGACACCAACATCGAAACG+AGG | 0.688564 | 4.2:+17679912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAATTATTCTTTTATTTAT+TGG | - | chr4.2:17679735-17679754 | MS.gene028323:intron | 10.0% |
| !! | AAAGAAAAACTAATAGTTAA+AGG | - | chr4.2:17679956-17679975 | MS.gene028323:CDS | 15.0% |
| !! | AAATTATAAAAACAGCTTAT+AGG | - | chr4.2:17679077-17679096 | MS.gene028323:intron | 15.0% |
| !! | AAGAAAAACTAATAGTTAAA+GGG | - | chr4.2:17679957-17679976 | MS.gene028323:CDS | 15.0% |
| !! | ATAAAACACAAACTTAATTA+GGG | + | chr4.2:17679230-17679249 | None:intergenic | 15.0% |
| !! | TAAATTCAAACCATTATTAA+TGG | - | chr4.2:17679626-17679645 | MS.gene028323:intron | 15.0% |
| !! | TATAAAACACAAACTTAATT+AGG | + | chr4.2:17679231-17679250 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATTATGCTTTTA+TGG | - | chr4.2:17679659-17679678 | MS.gene028323:intron | 15.0% |
| !!! | TTTTCTTATTATGCTTTTAT+GGG | - | chr4.2:17679660-17679679 | MS.gene028323:intron | 15.0% |
| !! | AAAATATTAAAAGATGGGAT+GGG | + | chr4.2:17679821-17679840 | None:intergenic | 20.0% |
| !! | AAATAAAAGAATAATTAGCG+AGG | + | chr4.2:17679733-17679752 | None:intergenic | 20.0% |
| !! | AATTGAATAATTGTTGCAAA+AGG | + | chr4.2:17679869-17679888 | None:intergenic | 20.0% |
| !! | ACAAAGTATATAAAGATTGT+CGG | + | chr4.2:17679994-17680013 | None:intergenic | 20.0% |
| !! | AGAAAAACTAATAGTTAAAG+GGG | - | chr4.2:17679958-17679977 | MS.gene028323:CDS | 20.0% |
| !! | TAAAATATTAAAAGATGGGA+TGG | + | chr4.2:17679822-17679841 | None:intergenic | 20.0% |
| !!! | TCATGAATCATTTTTAATGA+TGG | - | chr4.2:17679597-17679616 | MS.gene028323:intron | 20.0% |
| !!! | TTTCTTATTATGCTTTTATG+GGG | - | chr4.2:17679661-17679680 | MS.gene028323:intron | 20.0% |
| !!! | TTTTTTCCTTTCTAATCTAT+TGG | - | chr4.2:17679375-17679394 | MS.gene028323:intron | 20.0% |
| ! | AAAATTGTTGTGGAATTGAA+TGG | - | chr4.2:17678747-17678766 | MS.gene028323:intron | 25.0% |
| ! | AGAAAACTAACTTATGTCAA+TGG | + | chr4.2:17678973-17678992 | None:intergenic | 25.0% |
| ! | GTATAGTAAATAGATAGAGT+GGG | + | chr4.2:17679711-17679730 | None:intergenic | 25.0% |
| ! | TATACTTTGTAGTAAATCGA+TGG | - | chr4.2:17680004-17680023 | MS.gene028323:CDS | 25.0% |
| ! | TCAAACCATTATTAATGGTT+GGG | - | chr4.2:17679631-17679650 | MS.gene028323:intron | 25.0% |
| ! | TCAAACTAGTATCATGTTTA+TGG | + | chr4.2:17678881-17678900 | None:intergenic | 25.0% |
| ! | TGATATATTGTATACTCTTG+TGG | - | chr4.2:17678674-17678693 | MS.gene028323:intron | 25.0% |
| ! | TTCAAACCATTATTAATGGT+TGG | - | chr4.2:17679630-17679649 | MS.gene028323:intron | 25.0% |
| ! | TTGACTTATGCTTCATATAT+TGG | - | chr4.2:17679501-17679520 | MS.gene028323:intron | 25.0% |
| !! | GAACTTATGAAATTAGCTTA+TGG | - | chr4.2:17679006-17679025 | MS.gene028323:intron | 25.0% |
| !! | GTATCATATGATTTTTCTTG+TGG | - | chr4.2:17680109-17680128 | MS.gene028323:intron | 25.0% |
| !!! | ATTGACATAAGTTAGTTTTC+TGG | - | chr4.2:17678972-17678991 | MS.gene028323:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr4.2:17678562-17678581 | None:intergenic | 25.0% |
| !!! | TTGACATAAGTTAGTTTTCT+GGG | - | chr4.2:17678973-17678992 | MS.gene028323:intron | 25.0% |
| AAAATAAGCCGATAAAAGCT+TGG | + | chr4.2:17679040-17679059 | None:intergenic | 30.0% | |
| AAACTTAATTAGGGTCTGTT+TGG | + | chr4.2:17679221-17679240 | None:intergenic | 30.0% | |
| AAATAAGCCGATAAAAGCTT+GGG | + | chr4.2:17679039-17679058 | None:intergenic | 30.0% | |
| AATGGAAGATTGAATAAGTG+TGG | - | chr4.2:17678765-17678784 | MS.gene028323:intron | 30.0% | |
| ACAAGCAACATAACATTCAA+CGG | + | chr4.2:17680087-17680106 | None:intergenic | 30.0% | |
| ATTTGAGCAACCAATAGTTA+GGG | + | chr4.2:17680136-17680155 | None:intergenic | 30.0% | |
| CAAAAGCCAATAGATTAGAA+AGG | + | chr4.2:17679384-17679403 | None:intergenic | 30.0% | |
| CTTGTGGTTATAGGATATAT+TGG | - | chr4.2:17678690-17678709 | MS.gene028323:intron | 30.0% | |
| GGTATAGTAAATAGATAGAG+TGG | + | chr4.2:17679712-17679731 | None:intergenic | 30.0% | |
| TATAGTTCCTAACTTTCTTG+TGG | - | chr4.2:17679247-17679266 | MS.gene028323:intron | 30.0% | |
| TCATATATTGGAAATCACTG+TGG | - | chr4.2:17679513-17679532 | MS.gene028323:intron | 30.0% | |
| TTGTATACTCTTGTGGTTAT+AGG | - | chr4.2:17678681-17678700 | MS.gene028323:intron | 30.0% | |
| ! | CAATATTCCCAAGCTTTTAT+CGG | - | chr4.2:17679029-17679048 | MS.gene028323:intron | 30.0% |
| ! | TTATTATGCTTTTATGGGGT+GGG | - | chr4.2:17679665-17679684 | MS.gene028323:intron | 30.0% |
| !! | ATGTAGTTGACTCTATTTTG+TGG | - | chr4.2:17678627-17678646 | MS.gene028323:intron | 30.0% |
| !! | TGTAGTTGACTCTATTTTGT+GGG | - | chr4.2:17678628-17678647 | MS.gene028323:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | + | chr4.2:17678558-17678577 | None:intergenic | 30.0% |
| !!! | CTAGTAGGCTTTTAAAACTT+GGG | - | chr4.2:17679432-17679451 | MS.gene028323:intron | 30.0% |
| !!! | CTTTCTAATCTATTGGCTTT+TGG | - | chr4.2:17679382-17679401 | MS.gene028323:intron | 30.0% |
| !!! | TCTAGTAGGCTTTTAAAACT+TGG | - | chr4.2:17679431-17679450 | MS.gene028323:intron | 30.0% |
| ACAGAAACCTGTTCTATATG+GGG | - | chr4.2:17679915-17679934 | MS.gene028323:CDS | 35.0% | |
| AGAATGACCACAAGAAAGTT+AGG | + | chr4.2:17679257-17679276 | None:intergenic | 35.0% | |
| AGACAGAAACCTGTTCTATA+TGG | - | chr4.2:17679913-17679932 | MS.gene028323:CDS | 35.0% | |
| ATACGCCCAACCATTAATAA+TGG | + | chr4.2:17679639-17679658 | None:intergenic | 35.0% | |
| ATATTGGAAATCACTGTGGT+AGG | - | chr4.2:17679517-17679536 | MS.gene028323:intron | 35.0% | |
| CCTACTAGACCTAACATAAA+GGG | + | chr4.2:17679420-17679439 | None:intergenic | 35.0% | |
| CTACTAGACCTAACATAAAG+GGG | + | chr4.2:17679419-17679438 | None:intergenic | 35.0% | |
| CTGAAGTTGCTATCATCATA+TGG | - | chr4.2:17680057-17680076 | MS.gene028323:intron | 35.0% | |
| GACAGAAACCTGTTCTATAT+GGG | - | chr4.2:17679914-17679933 | MS.gene028323:CDS | 35.0% | |
| GATTTGAGCAACCAATAGTT+AGG | + | chr4.2:17680137-17680156 | None:intergenic | 35.0% | |
| TAGTAAATAGATAGAGTGGG+AGG | + | chr4.2:17679708-17679727 | None:intergenic | 35.0% | |
| TGTTTGATCTCGACATAACA+AGG | + | chr4.2:17679351-17679370 | None:intergenic | 35.0% | |
| TTAATTAGGGTCTGTTTGGA+TGG | + | chr4.2:17679217-17679236 | None:intergenic | 35.0% | |
| TTGCTCAAATCATGCAGTTT+GGG | - | chr4.2:17680146-17680165 | MS.gene028323:CDS | 35.0% | |
| ! | CTTATTATGCTTTTATGGGG+TGG | - | chr4.2:17679664-17679683 | MS.gene028323:intron | 35.0% |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr4.2:17680226-17680245 | MS.gene028323:CDS | 35.0% |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr4.2:17679436-17679455 | MS.gene028323:intron | 35.0% |
| AGGATGGCCTAATCATAACT+TGG | + | chr4.2:17678542-17678561 | None:intergenic | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr4.2:17678510-17678529 | MS.gene028323:CDS | 40.0% | |
| ATTAGTCCTCGTTTCGATGT+TGG | - | chr4.2:17678792-17678811 | MS.gene028323:intron | 40.0% | |
| CAAATGTCTCACTCACTTAC+GGG | - | chr4.2:17679548-17679567 | MS.gene028323:intron | 40.0% | |
| CCAAATGTCTCACTCACTTA+CGG | - | chr4.2:17679547-17679566 | MS.gene028323:intron | 40.0% | |
| CCCTTTATGTTAGGTCTAGT+AGG | - | chr4.2:17679417-17679436 | MS.gene028323:intron | 40.0% | |
| CGTAAGTGAGTGAGACATTT+GGG | + | chr4.2:17679549-17679568 | None:intergenic | 40.0% | |
| CTAACATAAAGGGGAATTCC+AGG | + | chr4.2:17679410-17679429 | None:intergenic | 40.0% | |
| CTGGAATTCCCCTTTATGTT+AGG | - | chr4.2:17679408-17679427 | MS.gene028323:intron | 40.0% | |
| CTGTATTCCCCATATAGAAC+AGG | + | chr4.2:17679925-17679944 | None:intergenic | 40.0% | |
| CTTATCGTCATGCAAAAGCA+TGG | - | chr4.2:17678582-17678601 | MS.gene028323:intron | 40.0% | |
| GCCTACTAGACCTAACATAA+AGG | + | chr4.2:17679421-17679440 | None:intergenic | 40.0% | |
| GGTGGGAGTAGAATATTCAT+TGG | - | chr4.2:17679682-17679701 | MS.gene028323:intron | 40.0% | |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr4.2:17678814-17678833 | MS.gene028323:intron | 40.0% | |
| GTTGCTCAAATCATGCAGTT+TGG | - | chr4.2:17680145-17680164 | MS.gene028323:CDS | 40.0% | |
| TAAGTCAAGACAAACACTGC+CGG | + | chr4.2:17679489-17679508 | None:intergenic | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr4.2:17680192-17680211 | MS.gene028323:CDS | 40.0% | |
| TGTACAATGCTGAGAAACGT+GGG | - | chr4.2:17678511-17678530 | MS.gene028323:CDS | 40.0% | |
| TTCTTGTGGTCCCTAACTAT+TGG | - | chr4.2:17680123-17680142 | MS.gene028323:intron | 40.0% | |
| TTTGTGTACCACATTGACGT+TGG | - | chr4.2:17679277-17679296 | MS.gene028323:intron | 40.0% | |
| ! | CATGCTTTTGCATGACGATA+AGG | + | chr4.2:17678584-17678603 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr4.2:17678589-17678608 | MS.gene028323:intron | 40.0% |
| !! | AACTTGGGTTGGAATTGTAG+AGG | - | chr4.2:17679447-17679466 | MS.gene028323:intron | 40.0% |
| !! | ACTTGGGTTGGAATTGTAGA+GGG | - | chr4.2:17679448-17679467 | MS.gene028323:intron | 40.0% |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr4.2:17680225-17680244 | MS.gene028323:CDS | 40.0% |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr4.2:17678810-17678829 | MS.gene028323:intron | 40.0% |
| !! | TCGAATACGTTGATGATCAC+AGG | - | chr4.2:17678718-17678737 | MS.gene028323:intron | 40.0% |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr4.2:17678855-17678874 | None:intergenic | 40.0% |
| !!! | ATCTATTGGCTTTTGGTTCC+TGG | - | chr4.2:17679389-17679408 | MS.gene028323:intron | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | + | chr4.2:17678856-17678875 | None:intergenic | 40.0% |
| AGGGGTTAACCAGAACAATC+CGG | - | chr4.2:17679467-17679486 | MS.gene028323:intron | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr4.2:17680188-17680207 | None:intergenic | 45.0% | |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr4.2:17680172-17680191 | MS.gene028323:CDS | 45.0% | |
| CACTCACTTACGGGACTATT+TGG | - | chr4.2:17679557-17679576 | MS.gene028323:intron | 45.0% | |
| CAGGTCTGGCAAAATTGTTG+TGG | - | chr4.2:17678737-17678756 | MS.gene028323:intron | 45.0% | |
| CCGTAAGTGAGTGAGACATT+TGG | + | chr4.2:17679550-17679569 | None:intergenic | 45.0% | |
| GAGGCTAGGAGAAAGAATGT+TGG | - | chr4.2:17680211-17680230 | MS.gene028323:CDS | 45.0% | |
| GCTAGGAGAAAGAATGTTGG+TGG | - | chr4.2:17680214-17680233 | MS.gene028323:CDS | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | + | chr4.2:17679288-17679307 | None:intergenic | 45.0% | |
| TCATGGATCATGAAGAGGCT+AGG | - | chr4.2:17680197-17680216 | MS.gene028323:CDS | 45.0% | |
| TTGACACCAACATCGAAACG+AGG | + | chr4.2:17678801-17678820 | None:intergenic | 45.0% | |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr4.2:17678593-17678612 | MS.gene028323:intron | 45.0% |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr4.2:17678823-17678842 | MS.gene028323:intron | 45.0% |
| !! | CTTGGGTTGGAATTGTAGAG+GGG | - | chr4.2:17679449-17679468 | MS.gene028323:intron | 45.0% |
| !! | GGAAGCGCCAAGTTATGATT+AGG | - | chr4.2:17678532-17678551 | MS.gene028323:CDS | 45.0% |
| !! | TACGTTGATGATCACAGGTC+TGG | - | chr4.2:17678723-17678742 | MS.gene028323:intron | 45.0% |
| !! | AAATTAAAATATTAAAAGAT+GGG | + | chr4.2:17679826-17679845 | None:intergenic | 5.0% |
| !! | TAAATTAAAATATTAAAAGA+TGG | + | chr4.2:17679827-17679846 | None:intergenic | 5.0% |
| CAAACACTGCCGGATTGTTC+TGG | + | chr4.2:17679479-17679498 | None:intergenic | 50.0% | |
| GACTACCTCTGCTGGTATCA+TGG | - | chr4.2:17680180-17680199 | MS.gene028323:CDS | 50.0% | |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr4.2:17678842-17678861 | MS.gene028323:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 17678471 | 17680261 | 17678471 | ID=MS.gene028323 |
| chr4.2 | mRNA | 17678471 | 17680261 | 17678471 | ID=MS.gene028323.t1;Parent=MS.gene028323 |
| chr4.2 | exon | 17680129 | 17680261 | 17680129 | ID=MS.gene028323.t1.exon1;Parent=MS.gene028323.t1 |
| chr4.2 | CDS | 17680129 | 17680261 | 17680129 | ID=cds.MS.gene028323.t1;Parent=MS.gene028323.t1 |
| chr4.2 | exon | 17679869 | 17680029 | 17679869 | ID=MS.gene028323.t1.exon2;Parent=MS.gene028323.t1 |
| chr4.2 | CDS | 17679869 | 17680029 | 17679869 | ID=cds.MS.gene028323.t1;Parent=MS.gene028323.t1 |
| chr4.2 | exon | 17678471 | 17678569 | 17678471 | ID=MS.gene028323.t1.exon3;Parent=MS.gene028323.t1 |
| chr4.2 | CDS | 17678471 | 17678569 | 17678471 | ID=cds.MS.gene028323.t1;Parent=MS.gene028323.t1 |
| Gene Sequence |
| Protein sequence |
