Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55887.t1 | XP_003630655.1 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 2.40E-67 | 264.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55887.t1 | Q9M0E0 | 81.4 | 129 | 24 | 0 | 1 | 129 | 1 | 129 | 1.3e-58 | 226.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55887.t1 | B7FH41 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 1.7e-67 | 264.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene55887 | 0.861519 | 9.69E-64 | -1.69E-46 |
| MS.gene049340 | MS.gene55887 | 0.824054 | 9.94E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene55887 | 0.878696 | 2.28E-69 | -1.69E-46 |
| MS.gene049382 | MS.gene55887 | 0.818935 | 1.51E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene55887 | 0.816317 | 5.89E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene55887 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene55887 | 0.81839 | 2.01E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene55887 | 0.895404 | 9.90E-76 | -1.69E-46 |
| MS.gene050303 | MS.gene55887 | 0.81747 | 3.24E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene55887 | 0.835988 | 1.22E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene55887 | 0.87698 | 9.07E-69 | -1.69E-46 |
| MS.gene050807 | MS.gene55887 | 0.826189 | 3.11E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene55887 | 0.831542 | 1.57E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene55887 | 0.824145 | 9.46E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene55887 | 0.821303 | 4.34E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene55887 | 0.808351 | 3.23E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene55887 | 0.83041 | 2.98E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene55887 | 0.832881 | 7.34E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene55887 | 0.867932 | 9.50E-66 | -1.69E-46 |
| MS.gene051330 | MS.gene55887 | 0.817437 | 3.30E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene55887 | 0.842636 | 2.29E-58 | -1.69E-46 |
| MS.gene05157 | MS.gene55887 | 0.8038 | 2.93E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene55887 | 0.803873 | 2.83E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene55887 | 0.813909 | 2.02E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene55887 | 0.806816 | 6.85E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene55887 | 0.819298 | 1.25E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene55887 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene051850 | MS.gene55887 | 0.814297 | 1.66E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene55887 | 0.817935 | 2.55E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene55887 | 0.83413 | 3.58E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene55887 | 0.85131 | 9.65E-61 | -1.69E-46 |
| MS.gene052397 | MS.gene55887 | 0.824904 | 6.27E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene55887 | 0.812583 | 3.94E-51 | -1.69E-46 |
| MS.gene052879 | MS.gene55887 | 0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene55887 | 0.81771 | 2.86E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene55887 | 0.848923 | 4.50E-60 | -1.69E-46 |
| MS.gene053008 | MS.gene55887 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene053074 | MS.gene55887 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene55887 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene55887 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene55887 | 0.804505 | 2.09E-49 | -1.69E-46 |
| MS.gene053590 | MS.gene55887 | 0.811173 | 7.99E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene55887 | 0.826243 | 3.02E-54 | -1.69E-46 |
| MS.gene055133 | MS.gene55887 | 0.804848 | 1.77E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene55887 | 0.855065 | 8.10E-62 | -1.69E-46 |
| MS.gene055424 | MS.gene55887 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene55887 | 0.846523 | 2.06E-59 | -1.69E-46 |
| MS.gene055912 | MS.gene55887 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene55887 | -0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene056432 | MS.gene55887 | 0.82711 | 1.87E-54 | -1.69E-46 |
| MS.gene056580 | MS.gene55887 | 0.826353 | 2.84E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene55887 | 0.850109 | 2.10E-60 | -1.69E-46 |
| MS.gene056631 | MS.gene55887 | 0.869005 | 4.28E-66 | -1.69E-46 |
| MS.gene056760 | MS.gene55887 | 0.863105 | 3.16E-64 | -1.69E-46 |
| MS.gene057057 | MS.gene55887 | 0.86146 | 1.01E-63 | -1.69E-46 |
| MS.gene057094 | MS.gene55887 | 0.825614 | 4.26E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene55887 | 0.850195 | 1.99E-60 | -1.69E-46 |
| MS.gene057234 | MS.gene55887 | 0.850225 | 1.95E-60 | -1.69E-46 |
| MS.gene057705 | MS.gene55887 | 0.836545 | 8.79E-57 | -1.69E-46 |
| MS.gene05795 | MS.gene55887 | 0.804303 | 2.30E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene55887 | 0.847067 | 1.46E-59 | -1.69E-46 |
| MS.gene058084 | MS.gene55887 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene05809 | MS.gene55887 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene55887 | 0.825762 | 3.93E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene55887 | 0.8958 | 6.79E-76 | -1.69E-46 |
| MS.gene059006 | MS.gene55887 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene059151 | MS.gene55887 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene55887 | 0.860338 | 2.22E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene55887 | 0.836932 | 7.00E-57 | -1.69E-46 |
| MS.gene059937 | MS.gene55887 | 0.819983 | 8.72E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene55887 | 0.879661 | 1.04E-69 | -1.69E-46 |
| MS.gene060194 | MS.gene55887 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene55887 | 0.831844 | 1.33E-55 | -1.69E-46 |
| MS.gene060463 | MS.gene55887 | 0.814485 | 1.50E-51 | -1.69E-46 |
| MS.gene060465 | MS.gene55887 | 0.817562 | 3.09E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene55887 | 0.804932 | 1.70E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene55887 | 0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene061145 | MS.gene55887 | 0.846376 | 2.26E-59 | -1.69E-46 |
| MS.gene061176 | MS.gene55887 | 0.809147 | 2.18E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene55887 | 0.807759 | 4.32E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene55887 | 0.808587 | 2.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35135 | MS.gene55887 | PPI |
| MS.gene55887 | MS.gene20156 | PPI |
| MS.gene55887 | MS.gene58719 | PPI |
| MS.gene55887 | MS.gene036595 | PPI |
| MS.gene55887 | MS.gene049026 | PPI |
| MS.gene55887 | MS.gene028323 | PPI |
| MS.gene55887 | MS.gene041458 | PPI |
| MS.gene55887 | MS.gene35135 | PPI |
| MS.gene55887 | MS.gene023130 | PPI |
| MS.gene028323 | MS.gene55887 | PPI |
| MS.gene55887 | MS.gene06172 | PPI |
| MS.gene55887 | MS.gene58227 | PPI |
| MS.gene55887 | MS.gene36468 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55887.t1 | MTR_8g101910 | 98.450 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 4.67e-94 | 267 |
| MS.gene55887.t1 | MTR_8g101910 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 3.41e-68 | 201 |
| MS.gene55887.t1 | MTR_4g094598 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 7.77e-46 | 145 |
| MS.gene55887.t1 | MTR_1g105415 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 7.77e-46 | 145 |
| MS.gene55887.t1 | MTR_4g117470 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.99e-45 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55887.t1 | AT4G29430 | 81.395 | 129 | 24 | 0 | 1 | 129 | 1 | 129 | 5.77e-79 | 229 |
| MS.gene55887.t1 | AT2G19720 | 79.845 | 129 | 26 | 0 | 1 | 129 | 1 | 129 | 1.60e-77 | 225 |
| MS.gene55887.t1 | AT2G39590 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 3.50e-46 | 146 |
| MS.gene55887.t1 | AT5G59850 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene55887.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene55887.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene55887.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene55887.t1 | AT3G46040 | 50.400 | 125 | 62 | 0 | 5 | 129 | 6 | 130 | 2.76e-44 | 141 |
Find 33 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATCCTCCCCACTCTA+TGG | 0.263185 | 4.3:-3490043 | None:intergenic |
| GAAGAGATAACATTGGAAAT+AGG | 0.265767 | 4.3:-3489267 | None:intergenic |
| TACAACTCCTGATGGTGTTT+TGG | 0.307095 | 4.3:+3490364 | MS.gene55887:CDS |
| AATGTAGGTGGTCAGGTTCT+TGG | 0.331557 | 4.3:+3490410 | MS.gene55887:CDS |
| AGGATATATCAAGGACTTTC+AGG | 0.389863 | 4.3:+3490010 | MS.gene55887:intron |
| CCTTTGCCTTGAGGTCTTGT+CGG | 0.398017 | 4.3:-3490109 | None:intergenic |
| ATCATGAAGAGGCCGCAAAA+AGG | 0.404793 | 4.3:+3490387 | MS.gene55887:CDS |
| TGAGGTCTTGTCGGTACGTA+AGG | 0.430606 | 4.3:-3490100 | None:intergenic |
| TGTGATCCTCCCCACTCTAT+GGG | 0.457890 | 4.3:-3490042 | None:intergenic |
| GAACGATGCGTTGAGGAGTA+TGG | 0.475978 | 4.3:+3489203 | MS.gene55887:CDS |
| GAACACTCTTCCAACACATC+AGG | 0.488180 | 4.3:+3490151 | MS.gene55887:CDS |
| TCATGATCCAAAACACCATC+AGG | 0.488311 | 4.3:-3490371 | None:intergenic |
| AAGAAAAGAAGAGATAACAT+TGG | 0.493444 | 4.3:-3489274 | None:intergenic |
| GAGAAAGAGAAATGGGGAGA+AGG | 0.505773 | 4.3:+3489175 | None:intergenic |
| CATTAACCAACCTGATGTGT+TGG | 0.507241 | 4.3:-3490161 | None:intergenic |
| ATTCAATATCCTTTGCCTTG+AGG | 0.544391 | 4.3:-3490118 | None:intergenic |
| GAAGAGAGGCAAAGCTATGG+TGG | 0.562394 | 4.3:+3489236 | MS.gene55887:CDS |
| GTGTATGATCCCCATAGAGT+GGG | 0.576109 | 4.3:+3490032 | MS.gene55887:CDS |
| CATGTTGGCAGGATATATCA+AGG | 0.581279 | 4.3:+3490001 | MS.gene55887:intron |
| GAGGTCTTGTCGGTACGTAA+GGG | 0.585892 | 4.3:-3490099 | None:intergenic |
| TGAGAAGAGAGGCAAAGCTA+TGG | 0.613395 | 4.3:+3489233 | MS.gene55887:CDS |
| GGTGTATGATCCCCATAGAG+TGG | 0.614660 | 4.3:+3490031 | MS.gene55887:CDS |
| AGGTAGAATTAACGATTGCA+AGG | 0.617470 | 4.3:+3490076 | MS.gene55887:CDS |
| TACGTACCGACAAGACCTCA+AGG | 0.647236 | 4.3:+3490103 | MS.gene55887:CDS |
| CCGACAAGACCTCAAGGCAA+AGG | 0.651183 | 4.3:+3490109 | MS.gene55887:CDS |
| GGATACTGAACGATGCGTTG+AGG | 0.657571 | 4.3:+3489196 | MS.gene55887:CDS |
| AGGATCACAGTTGAACTACA+AGG | 0.660202 | 4.3:+3490056 | MS.gene55887:CDS |
| ATGGTGAATGCTGAGAAGAG+AGG | 0.672519 | 4.3:+3489222 | MS.gene55887:CDS |
| GTTGTGATTACAACTCCTGA+TGG | 0.673437 | 4.3:+3490356 | MS.gene55887:CDS |
| GTGATCCTCCCCACTCTATG+GGG | 0.676832 | 4.3:-3490041 | None:intergenic |
| TGTATGATCCCCATAGAGTG+GGG | 0.683001 | 4.3:+3490033 | MS.gene55887:CDS |
| ATGATCCCCATAGAGTGGGG+AGG | 0.698167 | 4.3:+3490036 | MS.gene55887:CDS |
| CTTCAAATCATGAAACACCG+CGG | 0.732704 | 4.3:+3489294 | MS.gene55887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACTAAATAAAAACAAAA+CGG | - | chr4.3:3490191-3490210 | None:intergenic | 15.0% |
| !!! | AGAATTTAAAATATAAAAGC+TGG | - | chr4.3:3490263-3490282 | None:intergenic | 15.0% |
| !!! | TTTTTAATAGATATGAGTAA+AGG | + | chr4.3:3490286-3490305 | MS.gene55887:intron | 15.0% |
| !! | ATGTCTTAATTAATGGAATT+TGG | - | chr4.3:3489465-3489484 | None:intergenic | 20.0% |
| !! | CATTAATTAAGACATACATT+AGG | + | chr4.3:3489470-3489489 | MS.gene55887:intron | 20.0% |
| !! | CTAATGTATGTCTTAATTAA+TGG | - | chr4.3:3489472-3489491 | None:intergenic | 20.0% |
| !! | TGTCTTAATTAATGGAATTT+GGG | - | chr4.3:3489464-3489483 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTTACTTCTTAT+GGG | + | chr4.3:3489544-3489563 | MS.gene55887:intron | 20.0% |
| ! | AAGAAAAGAAGAGATAACAT+TGG | - | chr4.3:3489277-3489296 | None:intergenic | 25.0% |
| ! | AATTCAAACAAATATTACCG+CGG | - | chr4.3:3489314-3489333 | None:intergenic | 25.0% |
| ! | ATAGATATGAGTAAAGGAAA+AGG | + | chr4.3:3490292-3490311 | MS.gene55887:intron | 25.0% |
| ! | ATTTCATACTCATAAGATGA+AGG | - | chr4.3:3489365-3489384 | None:intergenic | 25.0% |
| ! | CATAAGAAGTAAGAAAAACA+AGG | - | chr4.3:3489545-3489564 | None:intergenic | 25.0% |
| ! | TAATTGTTGGAAAATAACCA+TGG | - | chr4.3:3489861-3489880 | None:intergenic | 25.0% |
| ! | TCATATCTCATGAAAAGAAA+TGG | + | chr4.3:3489832-3489851 | MS.gene55887:intron | 25.0% |
| ! | TTACTTCCATTATCTCAAAT+TGG | + | chr4.3:3489763-3489782 | MS.gene55887:intron | 25.0% |
| ! | TTTATTTATCTTGATGCAGT+GGG | + | chr4.3:3490328-3490347 | MS.gene55887:intron | 25.0% |
| ! | TTTCATACTCATAAGATGAA+GGG | - | chr4.3:3489364-3489383 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTCTTACTTCTTA+TGG | + | chr4.3:3489543-3489562 | MS.gene55887:intron | 25.0% |
| !!! | TGTGTTTTGGATAATTCATT+AGG | + | chr4.3:3489414-3489433 | MS.gene55887:intron | 25.0% |
| !!! | TTTTATTTATCTTGATGCAG+TGG | + | chr4.3:3490327-3490346 | MS.gene55887:intron | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4.3:3489570-3489589 | MS.gene55887:intron | 30.0% | |
| ACAAATATAATCACGTGTGT+AGG | - | chr4.3:3489743-3489762 | None:intergenic | 30.0% | |
| AGCATGTATATGTACATGAA+AGG | + | chr4.3:3489917-3489936 | MS.gene55887:intron | 30.0% | |
| AGCATTCTCCATATACAAAT+AGG | - | chr4.3:3490226-3490245 | None:intergenic | 30.0% | |
| CAGTTTCTCCTATTTGTATA+TGG | + | chr4.3:3490215-3490234 | MS.gene55887:intron | 30.0% | |
| GAAGAGATAACATTGGAAAT+AGG | - | chr4.3:3489270-3489289 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4.3:3489519-3489538 | None:intergenic | 30.0% | |
| TTATTTATCTTGATGCAGTG+GGG | + | chr4.3:3490329-3490348 | MS.gene55887:intron | 30.0% | |
| TTCTTATGGGTCAAAAACAA+TGG | + | chr4.3:3489557-3489576 | MS.gene55887:intron | 30.0% | |
| ! | ATTTTCCAACAATTATCAGC+TGG | + | chr4.3:3489866-3489885 | MS.gene55887:intron | 30.0% |
| ! | GTCATACCAATTTGAGATAA+TGG | - | chr4.3:3489772-3489791 | None:intergenic | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4.3:3489642-3489661 | None:intergenic | 30.0% |
| !!! | TATGTATTCGTTTTTTGAGC+TGG | + | chr4.3:3489386-3489405 | MS.gene55887:intron | 30.0% |
| AATTATCAGCTGGATAAGCA+TGG | + | chr4.3:3489876-3489895 | MS.gene55887:intron | 35.0% | |
| AGGATATATCAAGGACTTTC+AGG | + | chr4.3:3490010-3490029 | MS.gene55887:intron | 35.0% | |
| AGGTAGAATTAACGATTGCA+AGG | + | chr4.3:3490076-3490095 | MS.gene55887:CDS | 35.0% | |
| ATGAAAAGAAATGGTCTCCA+TGG | + | chr4.3:3489841-3489860 | MS.gene55887:intron | 35.0% | |
| ATTCAATATCCTTTGCCTTG+AGG | - | chr4.3:3490121-3490140 | None:intergenic | 35.0% | |
| CTTATCCAGCTGATAATTGT+TGG | - | chr4.3:3489874-3489893 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4.3:3489637-3489656 | MS.gene55887:intron | 35.0% | |
| ! | TGAGCTGGATTTATGTGTTT+TGG | + | chr4.3:3489401-3489420 | MS.gene55887:intron | 35.0% |
| !! | TAATTTGCTGTCGTTCATGT+TGG | + | chr4.3:3489986-3490005 | MS.gene55887:intron | 35.0% |
| AAAAAGGAATGTAGGTGGTC+AGG | + | chr4.3:3490403-3490422 | MS.gene55887:CDS | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr4.3:3489580-3489599 | MS.gene55887:intron | 40.0% | |
| AGGATCACAGTTGAACTACA+AGG | + | chr4.3:3490056-3490075 | MS.gene55887:CDS | 40.0% | |
| CATGTTGGCAGGATATATCA+AGG | + | chr4.3:3490001-3490020 | MS.gene55887:intron | 40.0% | |
| CATTAACCAACCTGATGTGT+TGG | - | chr4.3:3490164-3490183 | None:intergenic | 40.0% | |
| CTCAAATTGGTATGACGTTG+AGG | + | chr4.3:3489776-3489795 | MS.gene55887:intron | 40.0% | |
| CTTCAAATCATGAAACACCG+CGG | + | chr4.3:3489294-3489313 | MS.gene55887:CDS | 40.0% | |
| GTTGTGATTACAACTCCTGA+TGG | + | chr4.3:3490356-3490375 | MS.gene55887:CDS | 40.0% | |
| TCATGATCCAAAACACCATC+AGG | - | chr4.3:3490374-3490393 | None:intergenic | 40.0% | |
| ! | ACCACCTACATTCCTTTTTG+CGG | - | chr4.3:3490402-3490421 | None:intergenic | 40.0% |
| !! | TACAACTCCTGATGGTGTTT+TGG | + | chr4.3:3490364-3490383 | MS.gene55887:CDS | 40.0% |
| !! | TGGTGTTTTGGATCATGAAG+AGG | + | chr4.3:3490376-3490395 | MS.gene55887:CDS | 40.0% |
| AATGTAGGTGGTCAGGTTCT+TGG | + | chr4.3:3490410-3490429 | MS.gene55887:CDS | 45.0% | |
| ACTCTTCCAACACATCAGGT+TGG | + | chr4.3:3490155-3490174 | MS.gene55887:intron | 45.0% | |
| ATCATGAAGAGGCCGCAAAA+AGG | + | chr4.3:3490387-3490406 | MS.gene55887:CDS | 45.0% | |
| ATGGTGAATGCTGAGAAGAG+AGG | + | chr4.3:3489222-3489241 | MS.gene55887:CDS | 45.0% | |
| ATTGGTATGACGTTGAGGTG+TGG | + | chr4.3:3489781-3489800 | MS.gene55887:intron | 45.0% | |
| GAACACTCTTCCAACACATC+AGG | + | chr4.3:3490151-3490170 | MS.gene55887:CDS | 45.0% | |
| GTGTATGATCCCCATAGAGT+GGG | + | chr4.3:3490032-3490051 | MS.gene55887:CDS | 45.0% | |
| TGAGAAGAGAGGCAAAGCTA+TGG | + | chr4.3:3489233-3489252 | MS.gene55887:CDS | 45.0% | |
| TGTATGATCCCCATAGAGTG+GGG | + | chr4.3:3490033-3490052 | MS.gene55887:CDS | 45.0% | |
| TTGGTATGACGTTGAGGTGT+GGG | + | chr4.3:3489782-3489801 | MS.gene55887:intron | 45.0% | |
| GAACGATGCGTTGAGGAGTA+TGG | + | chr4.3:3489203-3489222 | MS.gene55887:CDS | 50.0% | |
| GAAGAGAGGCAAAGCTATGG+TGG | + | chr4.3:3489236-3489255 | MS.gene55887:CDS | 50.0% | |
| GAGGCCGCAAAAAGGAATGT+AGG | + | chr4.3:3490395-3490414 | MS.gene55887:CDS | 50.0% | |
| GCCGCAAAAAGGAATGTAGG+TGG | + | chr4.3:3490398-3490417 | MS.gene55887:CDS | 50.0% | |
| GGATACTGAACGATGCGTTG+AGG | + | chr4.3:3489196-3489215 | MS.gene55887:CDS | 50.0% | |
| GGTGTATGATCCCCATAGAG+TGG | + | chr4.3:3490031-3490050 | MS.gene55887:CDS | 50.0% | |
| TGTGATCCTCCCCACTCTAT+GGG | - | chr4.3:3490045-3490064 | None:intergenic | 50.0% | |
| TTGCTGTCGTTCATGTTGGC+AGG | + | chr4.3:3489990-3490009 | MS.gene55887:intron | 50.0% | |
| ! | CCTTTGCCTTGAGGTCTTGT+CGG | - | chr4.3:3490112-3490131 | None:intergenic | 50.0% |
| ! | GAGGTCTTGTCGGTACGTAA+GGG | - | chr4.3:3490102-3490121 | None:intergenic | 50.0% |
| ! | TACGTACCGACAAGACCTCA+AGG | + | chr4.3:3490103-3490122 | MS.gene55887:CDS | 50.0% |
| ! | TGAGGTCTTGTCGGTACGTA+AGG | - | chr4.3:3490103-3490122 | None:intergenic | 50.0% |
| ATGATCCCCATAGAGTGGGG+AGG | + | chr4.3:3490036-3490055 | MS.gene55887:CDS | 55.0% | |
| CCGACAAGACCTCAAGGCAA+AGG | + | chr4.3:3490109-3490128 | MS.gene55887:CDS | 55.0% | |
| CTGTGATCCTCCCCACTCTA+TGG | - | chr4.3:3490046-3490065 | None:intergenic | 55.0% | |
| GTGATCCTCCCCACTCTATG+GGG | - | chr4.3:3490044-3490063 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3489186 | 3490445 | 3489186 | ID=MS.gene55887 |
| chr4.3 | mRNA | 3489186 | 3490445 | 3489186 | ID=MS.gene55887.t1;Parent=MS.gene55887 |
| chr4.3 | exon | 3489186 | 3489315 | 3489186 | ID=MS.gene55887.t1.exon1;Parent=MS.gene55887.t1 |
| chr4.3 | CDS | 3489186 | 3489315 | 3489186 | ID=cds.MS.gene55887.t1;Parent=MS.gene55887.t1 |
| chr4.3 | exon | 3490012 | 3490172 | 3490012 | ID=MS.gene55887.t1.exon2;Parent=MS.gene55887.t1 |
| chr4.3 | CDS | 3490012 | 3490172 | 3490012 | ID=cds.MS.gene55887.t1;Parent=MS.gene55887.t1 |
| chr4.3 | exon | 3490347 | 3490445 | 3490347 | ID=MS.gene55887.t1.exon3;Parent=MS.gene55887.t1 |
| chr4.3 | CDS | 3490347 | 3490445 | 3490347 | ID=cds.MS.gene55887.t1;Parent=MS.gene55887.t1 |
| Gene Sequence |
| Protein sequence |
