Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06172.t1 | XP_003630655.1 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 2.40E-67 | 264.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06172.t1 | Q9M0E0 | 81.4 | 129 | 24 | 0 | 1 | 129 | 1 | 129 | 1.3e-58 | 226.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06172.t1 | B7FH41 | 98.4 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 1.7e-67 | 264.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene06172 | 0.842549 | 2.42E-58 | -1.69E-46 |
| MS.gene049340 | MS.gene06172 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene06172 | 0.858787 | 6.48E-63 | -1.69E-46 |
| MS.gene049382 | MS.gene06172 | 0.806028 | 1.00E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene06172 | 0.815165 | 1.06E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene06172 | 0.906331 | 1.66E-80 | -1.69E-46 |
| MS.gene050290 | MS.gene06172 | 0.802598 | 5.20E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene06172 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene06172 | 0.849544 | 3.02E-60 | -1.69E-46 |
| MS.gene050815 | MS.gene06172 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene06172 | 0.820973 | 5.17E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene06172 | 0.84931 | 3.51E-60 | -1.69E-46 |
| MS.gene051243 | MS.gene06172 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene06172 | 0.843063 | 1.76E-58 | -1.69E-46 |
| MS.gene051328 | MS.gene06172 | 0.844261 | 8.44E-59 | -1.69E-46 |
| MS.gene051330 | MS.gene06172 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene06172 | 0.823878 | 1.09E-53 | -1.69E-46 |
| MS.gene051451 | MS.gene06172 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene06172 | 0.818457 | 1.94E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene06172 | 0.842782 | 2.10E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene06172 | 0.836724 | 7.91E-57 | -1.69E-46 |
| MS.gene051756 | MS.gene06172 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene06172 | 0.817228 | 3.68E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene06172 | 0.807909 | 4.02E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene06172 | 0.825738 | 3.98E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene06172 | 0.848539 | 5.75E-60 | -1.69E-46 |
| MS.gene052133 | MS.gene06172 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene052202 | MS.gene06172 | 0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene06172 | 0.851356 | 9.36E-61 | -1.69E-46 |
| MS.gene052302 | MS.gene06172 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene06172 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene06172 | 0.811736 | 6.03E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene06172 | 0.845874 | 3.09E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene06172 | 0.834228 | 3.38E-56 | -1.69E-46 |
| MS.gene053952 | MS.gene06172 | 0.819308 | 1.24E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene06172 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene06172 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene06172 | 0.850644 | 1.49E-60 | -1.69E-46 |
| MS.gene055424 | MS.gene06172 | 0.814507 | 1.49E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene06172 | 0.804517 | 2.08E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene06172 | 0.808848 | 2.53E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene06172 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene056432 | MS.gene06172 | 0.836205 | 1.07E-56 | -1.69E-46 |
| MS.gene056580 | MS.gene06172 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene06172 | 0.853763 | 1.93E-61 | -1.69E-46 |
| MS.gene056631 | MS.gene06172 | 0.875636 | 2.64E-68 | -1.69E-46 |
| MS.gene056760 | MS.gene06172 | 0.843815 | 1.11E-58 | -1.69E-46 |
| MS.gene057057 | MS.gene06172 | 0.860795 | 1.61E-63 | -1.69E-46 |
| MS.gene057094 | MS.gene06172 | 0.859598 | 3.70E-63 | -1.69E-46 |
| MS.gene057140 | MS.gene06172 | 0.851412 | 9.03E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene06172 | 0.873668 | 1.23E-67 | -1.69E-46 |
| MS.gene057705 | MS.gene06172 | 0.821829 | 3.28E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene06172 | 0.854472 | 1.20E-61 | -1.69E-46 |
| MS.gene05809 | MS.gene06172 | 0.827774 | 1.30E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene06172 | 0.809871 | 1.53E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene06172 | 0.837178 | 6.06E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene06172 | 0.909378 | 6.09E-82 | -1.69E-46 |
| MS.gene059726 | MS.gene06172 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene05978 | MS.gene06172 | 0.827262 | 1.72E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene06172 | 0.860822 | 1.58E-63 | -1.69E-46 |
| MS.gene06001 | MS.gene06172 | 0.892221 | 1.94E-74 | -1.69E-46 |
| MS.gene060429 | MS.gene06172 | 0.801782 | 7.65E-49 | -1.69E-46 |
| MS.gene060463 | MS.gene06172 | 0.815174 | 1.06E-51 | -1.69E-46 |
| MS.gene060465 | MS.gene06172 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene06172 | 0.800144 | 1.65E-48 | -1.69E-46 |
| MS.gene060917 | MS.gene06172 | 0.806028 | 1.00E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene06172 | 0.882622 | 8.92E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06172 | MS.gene58227 | PPI |
| MS.gene041458 | MS.gene06172 | PPI |
| MS.gene36468 | MS.gene06172 | PPI |
| MS.gene036595 | MS.gene06172 | PPI |
| MS.gene028323 | MS.gene06172 | PPI |
| MS.gene35135 | MS.gene06172 | PPI |
| MS.gene58719 | MS.gene06172 | PPI |
| MS.gene06172 | MS.gene049026 | PPI |
| MS.gene55887 | MS.gene06172 | PPI |
| MS.gene20156 | MS.gene06172 | PPI |
| MS.gene58227 | MS.gene06172 | PPI |
| MS.gene06172 | MS.gene023130 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06172.t1 | MTR_8g101910 | 98.450 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 4.67e-94 | 267 |
| MS.gene06172.t1 | MTR_8g101910 | 96.970 | 99 | 3 | 0 | 1 | 99 | 1 | 99 | 3.41e-68 | 201 |
| MS.gene06172.t1 | MTR_4g094598 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 7.77e-46 | 145 |
| MS.gene06172.t1 | MTR_1g105415 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 7.77e-46 | 145 |
| MS.gene06172.t1 | MTR_4g117470 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.99e-45 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06172.t1 | AT4G29430 | 81.395 | 129 | 24 | 0 | 1 | 129 | 1 | 129 | 5.77e-79 | 229 |
| MS.gene06172.t1 | AT2G19720 | 79.845 | 129 | 26 | 0 | 1 | 129 | 1 | 129 | 1.60e-77 | 225 |
| MS.gene06172.t1 | AT2G39590 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 3.50e-46 | 146 |
| MS.gene06172.t1 | AT5G59850 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene06172.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene06172.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene06172.t1 | AT1G07770 | 52.000 | 125 | 60 | 0 | 5 | 129 | 6 | 130 | 1.97e-45 | 144 |
| MS.gene06172.t1 | AT3G46040 | 50.400 | 125 | 62 | 0 | 5 | 129 | 6 | 130 | 2.76e-44 | 141 |
Find 33 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATCCTCCCCACTCTA+TGG | 0.263185 | 4.2:-3285826 | None:intergenic |
| GAAGAGATAACATTGGAAAT+AGG | 0.265767 | 4.2:-3285161 | None:intergenic |
| TACAACTCCTGATGGTGTTT+TGG | 0.307095 | 4.2:+3286150 | MS.gene06172:CDS |
| AATGTAGGTGGTCAGGTTCT+TGG | 0.331557 | 4.2:+3286196 | MS.gene06172:CDS |
| AGGATATATCAAGGACTTTC+AGG | 0.389863 | 4.2:+3285793 | MS.gene06172:intron |
| CCTTTGCCTTGAGGTCTTGT+CGG | 0.398017 | 4.2:-3285892 | None:intergenic |
| ATCATGAAGAGGCCGCAAAA+AGG | 0.404793 | 4.2:+3286173 | MS.gene06172:CDS |
| TGAGGTCTTGTCGGTACGTA+AGG | 0.430606 | 4.2:-3285883 | None:intergenic |
| TGTGATCCTCCCCACTCTAT+GGG | 0.457890 | 4.2:-3285825 | None:intergenic |
| GAACGATGCGTTGAGGAGTA+TGG | 0.475978 | 4.2:+3285097 | MS.gene06172:CDS |
| GAACACTCTTCCAACACATC+AGG | 0.488180 | 4.2:+3285934 | MS.gene06172:CDS |
| TCATGATCCAAAACACCATC+AGG | 0.488311 | 4.2:-3286157 | None:intergenic |
| AAGAAAAGAAGAGATAACAT+TGG | 0.493444 | 4.2:-3285168 | None:intergenic |
| GAGAAAGAGAAATGGGGAGA+AGG | 0.505773 | 4.2:+3285069 | None:intergenic |
| CATTAACCAACCTGATGTGT+TGG | 0.507241 | 4.2:-3285944 | None:intergenic |
| ATTCAATATCCTTTGCCTTG+AGG | 0.544391 | 4.2:-3285901 | None:intergenic |
| GAAGAGAGGCAAAGCTATGG+TGG | 0.562394 | 4.2:+3285130 | MS.gene06172:CDS |
| GTGTATGATCCCCATAGAGT+GGG | 0.576109 | 4.2:+3285815 | MS.gene06172:CDS |
| CATGTTGGCAGGATATATCA+AGG | 0.581279 | 4.2:+3285784 | MS.gene06172:intron |
| GAGGTCTTGTCGGTACGTAA+GGG | 0.585892 | 4.2:-3285882 | None:intergenic |
| TGAGAAGAGAGGCAAAGCTA+TGG | 0.613395 | 4.2:+3285127 | MS.gene06172:CDS |
| GGTGTATGATCCCCATAGAG+TGG | 0.614660 | 4.2:+3285814 | MS.gene06172:CDS |
| AGGTAGAATTAACGATTGCA+AGG | 0.617470 | 4.2:+3285859 | MS.gene06172:CDS |
| TACGTACCGACAAGACCTCA+AGG | 0.647236 | 4.2:+3285886 | MS.gene06172:CDS |
| CCGACAAGACCTCAAGGCAA+AGG | 0.651183 | 4.2:+3285892 | MS.gene06172:CDS |
| GGATACTGAACGATGCGTTG+AGG | 0.657571 | 4.2:+3285090 | MS.gene06172:CDS |
| AGGATCACAGTTGAACTACA+AGG | 0.660202 | 4.2:+3285839 | MS.gene06172:CDS |
| ATGGTGAATGCTGAGAAGAG+AGG | 0.672519 | 4.2:+3285116 | MS.gene06172:CDS |
| GTTGTGATTACAACTCCTGA+TGG | 0.673437 | 4.2:+3286142 | MS.gene06172:CDS |
| GTGATCCTCCCCACTCTATG+GGG | 0.676832 | 4.2:-3285824 | None:intergenic |
| TGTATGATCCCCATAGAGTG+GGG | 0.683001 | 4.2:+3285816 | MS.gene06172:CDS |
| ATGATCCCCATAGAGTGGGG+AGG | 0.698167 | 4.2:+3285819 | MS.gene06172:CDS |
| CTTCAAATCATGAAACACCG+CGG | 0.732704 | 4.2:+3285188 | MS.gene06172:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAAAGATATTTTTAG+TGG | + | chr4.2:3285423-3285442 | MS.gene06172:intron | 10.0% |
| !! | AACACTAAATAAAAACAAAA+CGG | - | chr4.2:3285974-3285993 | None:intergenic | 15.0% |
| !!! | AGAATTTAAAATATAAAAGC+TGG | - | chr4.2:3286046-3286065 | None:intergenic | 15.0% |
| !! | ATGTCTTAATTAATGGAATT+TGG | - | chr4.2:3285359-3285378 | None:intergenic | 20.0% |
| !! | CATTAATTAAGACATACATT+AGG | + | chr4.2:3285364-3285383 | MS.gene06172:intron | 20.0% |
| !! | CTAATGTATGTCTTAATTAA+TGG | - | chr4.2:3285366-3285385 | None:intergenic | 20.0% |
| !! | TGTCTTAATTAATGGAATTT+GGG | - | chr4.2:3285358-3285377 | None:intergenic | 20.0% |
| !! | TTACTAATAGATATGAGTAA+AGG | + | chr4.2:3286072-3286091 | MS.gene06172:intron | 20.0% |
| ! | AAGAAAAGAAGAGATAACAT+TGG | - | chr4.2:3285171-3285190 | None:intergenic | 25.0% |
| ! | AATTCAAACAAATATTACCG+CGG | - | chr4.2:3285208-3285227 | None:intergenic | 25.0% |
| ! | ATAGATATGAGTAAAGGAAA+AGG | + | chr4.2:3286078-3286097 | MS.gene06172:intron | 25.0% |
| ! | ATTTCATACTCATAAGATGA+AGG | - | chr4.2:3285259-3285278 | None:intergenic | 25.0% |
| ! | TAATTGTTGGAAAATAACCA+TGG | - | chr4.2:3285644-3285663 | None:intergenic | 25.0% |
| ! | TCATATCTCATGAAAAGAAA+TGG | + | chr4.2:3285615-3285634 | MS.gene06172:intron | 25.0% |
| ! | TTACTTCCATTATCTCAAAT+TGG | + | chr4.2:3285546-3285565 | MS.gene06172:intron | 25.0% |
| ! | TTTATTTATCTTGATGCAGT+GGG | + | chr4.2:3286114-3286133 | MS.gene06172:intron | 25.0% |
| ! | TTTCATACTCATAAGATGAA+GGG | - | chr4.2:3285258-3285277 | None:intergenic | 25.0% |
| !!! | TGTGTTTTGGATAATTCATT+AGG | + | chr4.2:3285308-3285327 | MS.gene06172:intron | 25.0% |
| !!! | TTTTATTTATCTTGATGCAG+TGG | + | chr4.2:3286113-3286132 | MS.gene06172:intron | 25.0% |
| ACAAATATAATCACGTGTGT+AGG | - | chr4.2:3285526-3285545 | None:intergenic | 30.0% | |
| AGCATGTATATGTACATGAA+AGG | + | chr4.2:3285700-3285719 | MS.gene06172:intron | 30.0% | |
| AGCATTCTCCATTTACAAAT+AGG | - | chr4.2:3286009-3286028 | None:intergenic | 30.0% | |
| CAGTTTCACCTATTTGTAAA+TGG | + | chr4.2:3285998-3286017 | MS.gene06172:intron | 30.0% | |
| GAAGAGATAACATTGGAAAT+AGG | - | chr4.2:3285164-3285183 | None:intergenic | 30.0% | |
| TAGTTCTTGAGAATGAGAAA+TGG | - | chr4.2:3285457-3285476 | None:intergenic | 30.0% | |
| TTATTTATCTTGATGCAGTG+GGG | + | chr4.2:3286115-3286134 | MS.gene06172:intron | 30.0% | |
| ! | ATTTTCCAACAATTATCAGC+TGG | + | chr4.2:3285649-3285668 | MS.gene06172:intron | 30.0% |
| ! | GTCATACCAATTTGAGATAA+TGG | - | chr4.2:3285555-3285574 | None:intergenic | 30.0% |
| !!! | TATGTATTCGTTTTTTGAGC+TGG | + | chr4.2:3285280-3285299 | MS.gene06172:intron | 30.0% |
| AATTATCAGCTGGATAAGCA+TGG | + | chr4.2:3285659-3285678 | MS.gene06172:intron | 35.0% | |
| AGGATATATCAAGGACTTTC+AGG | + | chr4.2:3285793-3285812 | MS.gene06172:intron | 35.0% | |
| AGGTAGAATTAACGATTGCA+AGG | + | chr4.2:3285859-3285878 | MS.gene06172:CDS | 35.0% | |
| ATGAAAAGAAATGGTCTCCA+TGG | + | chr4.2:3285624-3285643 | MS.gene06172:intron | 35.0% | |
| ATTCAATATCCTTTGCCTTG+AGG | - | chr4.2:3285904-3285923 | None:intergenic | 35.0% | |
| CTTATCCAGCTGATAATTGT+TGG | - | chr4.2:3285657-3285676 | None:intergenic | 35.0% | |
| ! | TGAGCTGGATTTATGTGTTT+TGG | + | chr4.2:3285295-3285314 | MS.gene06172:intron | 35.0% |
| !! | TAATTTGCTGTCGTTCATGT+TGG | + | chr4.2:3285769-3285788 | MS.gene06172:intron | 35.0% |
| AAAAAGGAATGTAGGTGGTC+AGG | + | chr4.2:3286189-3286208 | MS.gene06172:CDS | 40.0% | |
| AGGATCACAGTTGAACTACA+AGG | + | chr4.2:3285839-3285858 | MS.gene06172:CDS | 40.0% | |
| CATGTTGGCAGGATATATCA+AGG | + | chr4.2:3285784-3285803 | MS.gene06172:intron | 40.0% | |
| CATTAACCAACCTGATGTGT+TGG | - | chr4.2:3285947-3285966 | None:intergenic | 40.0% | |
| CTCAAATTGGTATGACGTTG+AGG | + | chr4.2:3285559-3285578 | MS.gene06172:intron | 40.0% | |
| CTTCAAATCATGAAACACCG+CGG | + | chr4.2:3285188-3285207 | MS.gene06172:CDS | 40.0% | |
| GTTGTGATTACAACTCCTGA+TGG | + | chr4.2:3286142-3286161 | MS.gene06172:CDS | 40.0% | |
| TCATGATCCAAAACACCATC+AGG | - | chr4.2:3286160-3286179 | None:intergenic | 40.0% | |
| ! | ACCACCTACATTCCTTTTTG+CGG | - | chr4.2:3286188-3286207 | None:intergenic | 40.0% |
| !! | TACAACTCCTGATGGTGTTT+TGG | + | chr4.2:3286150-3286169 | MS.gene06172:CDS | 40.0% |
| !! | TGGTGTTTTGGATCATGAAG+AGG | + | chr4.2:3286162-3286181 | MS.gene06172:CDS | 40.0% |
| AATGTAGGTGGTCAGGTTCT+TGG | + | chr4.2:3286196-3286215 | MS.gene06172:CDS | 45.0% | |
| ACTCTTCCAACACATCAGGT+TGG | + | chr4.2:3285938-3285957 | MS.gene06172:intron | 45.0% | |
| ATCATGAAGAGGCCGCAAAA+AGG | + | chr4.2:3286173-3286192 | MS.gene06172:CDS | 45.0% | |
| ATGGTGAATGCTGAGAAGAG+AGG | + | chr4.2:3285116-3285135 | MS.gene06172:CDS | 45.0% | |
| ATTGGTATGACGTTGAGGTG+TGG | + | chr4.2:3285564-3285583 | MS.gene06172:intron | 45.0% | |
| GAACACTCTTCCAACACATC+AGG | + | chr4.2:3285934-3285953 | MS.gene06172:CDS | 45.0% | |
| GTGTATGATCCCCATAGAGT+GGG | + | chr4.2:3285815-3285834 | MS.gene06172:CDS | 45.0% | |
| TGAGAAGAGAGGCAAAGCTA+TGG | + | chr4.2:3285127-3285146 | MS.gene06172:CDS | 45.0% | |
| TGTATGATCCCCATAGAGTG+GGG | + | chr4.2:3285816-3285835 | MS.gene06172:CDS | 45.0% | |
| TTGGTATGACGTTGAGGTGT+GGG | + | chr4.2:3285565-3285584 | MS.gene06172:intron | 45.0% | |
| !!! | TATTATTAATTTTAGATTTT+TGG | + | chr4.2:3285388-3285407 | MS.gene06172:intron | 5.0% |
| GAACGATGCGTTGAGGAGTA+TGG | + | chr4.2:3285097-3285116 | MS.gene06172:CDS | 50.0% | |
| GAAGAGAGGCAAAGCTATGG+TGG | + | chr4.2:3285130-3285149 | MS.gene06172:CDS | 50.0% | |
| GAGGCCGCAAAAAGGAATGT+AGG | + | chr4.2:3286181-3286200 | MS.gene06172:CDS | 50.0% | |
| GCCGCAAAAAGGAATGTAGG+TGG | + | chr4.2:3286184-3286203 | MS.gene06172:CDS | 50.0% | |
| GGATACTGAACGATGCGTTG+AGG | + | chr4.2:3285090-3285109 | MS.gene06172:CDS | 50.0% | |
| GGTGTATGATCCCCATAGAG+TGG | + | chr4.2:3285814-3285833 | MS.gene06172:CDS | 50.0% | |
| TGTGATCCTCCCCACTCTAT+GGG | - | chr4.2:3285828-3285847 | None:intergenic | 50.0% | |
| TTGCTGTCGTTCATGTTGGC+AGG | + | chr4.2:3285773-3285792 | MS.gene06172:intron | 50.0% | |
| ! | CCTTTGCCTTGAGGTCTTGT+CGG | - | chr4.2:3285895-3285914 | None:intergenic | 50.0% |
| ! | GAGGTCTTGTCGGTACGTAA+GGG | - | chr4.2:3285885-3285904 | None:intergenic | 50.0% |
| ! | GGGTGCAGTTGTCGTGTTTT+CGG | + | chr4.2:3285585-3285604 | MS.gene06172:intron | 50.0% |
| ! | TACGTACCGACAAGACCTCA+AGG | + | chr4.2:3285886-3285905 | MS.gene06172:CDS | 50.0% |
| ! | TGAGGTCTTGTCGGTACGTA+AGG | - | chr4.2:3285886-3285905 | None:intergenic | 50.0% |
| ATGATCCCCATAGAGTGGGG+AGG | + | chr4.2:3285819-3285838 | MS.gene06172:CDS | 55.0% | |
| CCGACAAGACCTCAAGGCAA+AGG | + | chr4.2:3285892-3285911 | MS.gene06172:CDS | 55.0% | |
| CTGTGATCCTCCCCACTCTA+TGG | - | chr4.2:3285829-3285848 | None:intergenic | 55.0% | |
| GTGATCCTCCCCACTCTATG+GGG | - | chr4.2:3285827-3285846 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3285080 | 3286231 | 3285080 | ID=MS.gene06172 |
| chr4.2 | mRNA | 3285080 | 3286231 | 3285080 | ID=MS.gene06172.t1;Parent=MS.gene06172 |
| chr4.2 | exon | 3285080 | 3285209 | 3285080 | ID=MS.gene06172.t1.exon1;Parent=MS.gene06172.t1 |
| chr4.2 | CDS | 3285080 | 3285209 | 3285080 | ID=cds.MS.gene06172.t1;Parent=MS.gene06172.t1 |
| chr4.2 | exon | 3285795 | 3285955 | 3285795 | ID=MS.gene06172.t1.exon2;Parent=MS.gene06172.t1 |
| chr4.2 | CDS | 3285795 | 3285955 | 3285795 | ID=cds.MS.gene06172.t1;Parent=MS.gene06172.t1 |
| chr4.2 | exon | 3286133 | 3286231 | 3286133 | ID=MS.gene06172.t1.exon3;Parent=MS.gene06172.t1 |
| chr4.2 | CDS | 3286133 | 3286231 | 3286133 | ID=cds.MS.gene06172.t1;Parent=MS.gene06172.t1 |
| Gene Sequence |
| Protein sequence |
