Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36468.t1 | NP_001275136.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-68 | 266.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36468.t1 | P42798 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.6e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36468.t1 | A0A1U7YEG5 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-68 | 266.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene36468 | 0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene36468 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene36468 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene36468 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene36468 | 0.807564 | 4.75E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene36468 | 0.858431 | 8.28E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene36468 | 0.848064 | 7.78E-60 | -1.69E-46 |
| MS.gene050320 | MS.gene36468 | 0.814888 | 1.22E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene36468 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene36468 | 0.871319 | 7.48E-67 | -1.69E-46 |
| MS.gene050916 | MS.gene36468 | 0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene36468 | 0.860905 | 1.49E-63 | -1.69E-46 |
| MS.gene051245 | MS.gene36468 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene36468 | 0.822472 | 2.33E-53 | -1.69E-46 |
| MS.gene051330 | MS.gene36468 | 0.880507 | 5.19E-70 | -1.69E-46 |
| MS.gene05134 | MS.gene36468 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene36468 | 0.815856 | 7.46E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene36468 | 0.804447 | 2.15E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene36468 | 0.816326 | 5.86E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene36468 | 0.84155 | 4.44E-58 | -1.69E-46 |
| MS.gene051700 | MS.gene36468 | 0.860097 | 2.62E-63 | -1.69E-46 |
| MS.gene051746 | MS.gene36468 | 0.896531 | 3.37E-76 | -1.69E-46 |
| MS.gene051748 | MS.gene36468 | 0.883414 | 4.58E-71 | -1.69E-46 |
| MS.gene051756 | MS.gene36468 | 0.828623 | 8.11E-55 | -1.69E-46 |
| MS.gene051757 | MS.gene36468 | 0.827678 | 1.37E-54 | -1.69E-46 |
| MS.gene051850 | MS.gene36468 | 0.842796 | 2.08E-58 | -1.69E-46 |
| MS.gene051885 | MS.gene36468 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene36468 | 0.857291 | 1.80E-62 | -1.69E-46 |
| MS.gene051903 | MS.gene36468 | 0.894547 | 2.23E-75 | -1.69E-46 |
| MS.gene051975 | MS.gene36468 | 0.847334 | 1.24E-59 | -1.69E-46 |
| MS.gene052133 | MS.gene36468 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene36468 | 0.815514 | 8.89E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene36468 | 0.823929 | 1.06E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene36468 | 0.910893 | 1.12E-82 | -1.69E-46 |
| MS.gene053058 | MS.gene36468 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene053109 | MS.gene36468 | 0.831269 | 1.84E-55 | -1.69E-46 |
| MS.gene053381 | MS.gene36468 | 0.811676 | 6.22E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene36468 | 0.851164 | 1.06E-60 | -1.69E-46 |
| MS.gene054403 | MS.gene36468 | 0.8031 | 4.09E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene36468 | 0.807837 | 4.16E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene36468 | 0.831705 | 1.43E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene36468 | 0.817247 | 3.64E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene36468 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene36468 | -0.824713 | 6.95E-54 | -1.69E-46 |
| MS.gene055603 | MS.gene36468 | 0.846582 | 1.98E-59 | -1.69E-46 |
| MS.gene055780 | MS.gene36468 | 0.822795 | 1.96E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene36468 | 0.850381 | 1.76E-60 | -1.69E-46 |
| MS.gene056043 | MS.gene36468 | -0.844805 | 6.02E-59 | -1.69E-46 |
| MS.gene056075 | MS.gene36468 | 0.875701 | 2.50E-68 | -1.69E-46 |
| MS.gene056091 | MS.gene36468 | 0.866351 | 3.04E-65 | -1.69E-46 |
| MS.gene056215 | MS.gene36468 | 0.830676 | 2.57E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene36468 | 0.823799 | 1.14E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene36468 | 0.832589 | 8.67E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene36468 | 0.805266 | 1.45E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene36468 | 0.820665 | 6.08E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene36468 | 0.898829 | 3.62E-77 | -1.69E-46 |
| MS.gene056986 | MS.gene36468 | 0.855902 | 4.62E-62 | -1.69E-46 |
| MS.gene057057 | MS.gene36468 | 0.824686 | 7.06E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene36468 | 0.910707 | 1.39E-82 | -1.69E-46 |
| MS.gene057140 | MS.gene36468 | 0.810918 | 9.08E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene36468 | 0.834609 | 2.71E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene36468 | 0.835596 | 1.53E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene36468 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene36468 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene36468 | 0.808846 | 2.53E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene36468 | 0.836194 | 1.08E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene36468 | 0.855533 | 5.92E-62 | -1.69E-46 |
| MS.gene058852 | MS.gene36468 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene36468 | 0.880851 | 3.91E-70 | -1.69E-46 |
| MS.gene058911 | MS.gene36468 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene36468 | 0.828738 | 7.61E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene36468 | 0.837888 | 3.98E-57 | -1.69E-46 |
| MS.gene05954 | MS.gene36468 | 0.815766 | 7.82E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene36468 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene36468 | 0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene36468 | 0.941297 | 5.32E-101 | -1.69E-46 |
| MS.gene06011 | MS.gene36468 | 0.874023 | 9.34E-68 | -1.69E-46 |
| MS.gene060429 | MS.gene36468 | 0.878176 | 3.47E-69 | -1.69E-46 |
| MS.gene060463 | MS.gene36468 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene36468 | 0.80846 | 3.06E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene36468 | 0.843789 | 1.13E-58 | -1.69E-46 |
| MS.gene060763 | MS.gene36468 | 0.844828 | 5.93E-59 | -1.69E-46 |
| MS.gene060830 | MS.gene36468 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene060917 | MS.gene36468 | 0.823428 | 1.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35135 | MS.gene36468 | PPI |
| MS.gene36468 | MS.gene049026 | PPI |
| MS.gene36468 | MS.gene041458 | PPI |
| MS.gene36468 | MS.gene023130 | PPI |
| MS.gene36468 | MS.gene06172 | PPI |
| MS.gene36468 | MS.gene58227 | PPI |
| MS.gene028323 | MS.gene36468 | PPI |
| MS.gene36468 | MS.gene20156 | PPI |
| MS.gene36468 | MS.gene58719 | PPI |
| MS.gene36468 | MS.gene036595 | PPI |
| MS.gene55887 | MS.gene36468 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36468.t1 | MTR_4g117470 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.05e-93 | 266 |
| MS.gene36468.t1 | MTR_4g094598 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene36468.t1 | MTR_1g105415 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene36468.t1 | MTR_8g101910 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 1.82e-45 | 144 |
| MS.gene36468.t1 | MTR_8g101910 | 49.474 | 95 | 48 | 0 | 6 | 100 | 5 | 99 | 1.72e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36468.t1 | AT5G59850 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene36468.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene36468.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene36468.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene36468.t1 | AT3G46040 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 4.03e-92 | 262 |
| MS.gene36468.t1 | AT2G39590 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.30e-87 | 249 |
| MS.gene36468.t1 | AT4G29430 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 2.98e-47 | 149 |
| MS.gene36468.t1 | AT2G19720 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 3.11e-45 | 144 |
Find 28 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTGGTTATAGGATATAT+TGG | 0.379495 | 4.1:-18562207 | MS.gene36468:intron |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 4.1:-18560717 | MS.gene36468:CDS |
| ATTAGTCCTCGTTTCGATGT+TGG | 0.460967 | 4.1:-18562105 | MS.gene36468:CDS |
| AAAATTGTTGTGGAATTGAA+TGG | 0.479932 | 4.1:-18562150 | MS.gene36468:CDS |
| TACGTTGATGATCACAGGTC+TGG | 0.486815 | 4.1:-18562174 | MS.gene36468:CDS |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 4.1:-18560671 | MS.gene36468:CDS |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 4.1:-18562074 | MS.gene36468:CDS |
| AGGATGGCCTAATCATAACT+TGG | 0.529437 | 4.1:+18562351 | None:intergenic |
| GGAAGCGCCAAGTTATGATT+AGG | 0.530843 | 4.1:-18562358 | MS.gene36468:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 4.1:-18560725 | MS.gene36468:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 4.1:-18560672 | MS.gene36468:CDS |
| TCGAATACGTTGATGATCAC+AGG | 0.543527 | 4.1:-18562179 | MS.gene36468:CDS |
| GCTAGGAGAAAGAATGTTGG+TGG | 0.567141 | 4.1:-18560683 | MS.gene36468:CDS |
| TTGTAACAGCAAATATGGTG+AGG | 0.575157 | 4.1:-18562433 | None:intergenic |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 4.1:-18562055 | MS.gene36468:intron |
| TGTAACAGCAAATATGGTGA+GGG | 0.583163 | 4.1:-18562432 | None:intergenic |
| GAGGCTAGGAGAAAGAATGT+TGG | 0.584494 | 4.1:-18560686 | MS.gene36468:CDS |
| TCATGGATCATGAAGAGGCT+AGG | 0.585008 | 4.1:-18560700 | MS.gene36468:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.619087 | 4.1:-18562380 | MS.gene36468:CDS |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.620427 | 4.1:-18562087 | MS.gene36468:CDS |
| CTTATCGTCATGCAAAAGCA+TGG | 0.625917 | 4.1:-18562308 | MS.gene36468:intron |
| CAGGTCTGGCAAAATTGTTG+TGG | 0.629911 | 4.1:-18562160 | MS.gene36468:CDS |
| AATGGAAGATTGAATAAGTG+TGG | 0.630140 | 4.1:-18562132 | MS.gene36468:CDS |
| TGGTATCATGGATCATGAAG+AGG | 0.639197 | 4.1:-18560705 | MS.gene36468:CDS |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 4.1:+18560712 | None:intergenic |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 4.1:-18562083 | MS.gene36468:CDS |
| TGTACAATGCTGAGAAACGT+GGG | 0.665211 | 4.1:-18562379 | MS.gene36468:CDS |
| TTGACACCAACATCGAAACG+AGG | 0.688564 | 4.1:+18562099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAATTATTCTTTTATTTAT+TGG | - | chr4.1:18561915-18561934 | MS.gene36468:intron | 10.0% |
| !! | AAAGAAAAACTAATAGTTAA+AGG | - | chr4.1:18562136-18562155 | MS.gene36468:CDS | 15.0% |
| !! | AAATTATAAAAACAGCTTAT+AGG | - | chr4.1:18561257-18561276 | MS.gene36468:intron | 15.0% |
| !! | AAGAAAAACTAATAGTTAAA+GGG | - | chr4.1:18562137-18562156 | MS.gene36468:CDS | 15.0% |
| !! | ATAAAACACAAACTTAATTA+GGG | + | chr4.1:18561410-18561429 | None:intergenic | 15.0% |
| !! | TATAAAACACAAACTTAATT+AGG | + | chr4.1:18561411-18561430 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATTATGCTTTTA+TGG | - | chr4.1:18561839-18561858 | MS.gene36468:intron | 15.0% |
| !!! | TTTTCTTATTATGCTTTTAT+GGG | - | chr4.1:18561840-18561859 | MS.gene36468:intron | 15.0% |
| !! | AAAATATTAAAAGATGGGAT+GGG | + | chr4.1:18562001-18562020 | None:intergenic | 20.0% |
| !! | AAATAAAAGAATAATTAGCG+AGG | + | chr4.1:18561913-18561932 | None:intergenic | 20.0% |
| !! | AATTGAATAATTGTTGCAAA+AGG | + | chr4.1:18562049-18562068 | None:intergenic | 20.0% |
| !! | ACAAAGTATATAAAGATTGT+CGG | + | chr4.1:18562174-18562193 | None:intergenic | 20.0% |
| !! | AGAAAAACTAATAGTTAAAG+GGG | - | chr4.1:18562138-18562157 | MS.gene36468:CDS | 20.0% |
| !! | CAAAAGCAAATAAATTAGAA+AGG | + | chr4.1:18561564-18561583 | None:intergenic | 20.0% |
| !! | TAAAATATTAAAAGATGGGA+TGG | + | chr4.1:18562002-18562021 | None:intergenic | 20.0% |
| !! | TAAATTCAAACCGTTATTAA+TGG | - | chr4.1:18561806-18561825 | MS.gene36468:intron | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | - | chr4.1:18561562-18561581 | MS.gene36468:intron | 20.0% |
| !!! | TCATGAATCATTTTTAATGA+TGG | - | chr4.1:18561777-18561796 | MS.gene36468:intron | 20.0% |
| !!! | TTTCTTATTATGCTTTTATG+GGG | - | chr4.1:18561841-18561860 | MS.gene36468:intron | 20.0% |
| ! | AAAATTGTTGTGGAATTGAA+TGG | - | chr4.1:18560927-18560946 | MS.gene36468:intron | 25.0% |
| ! | AGAAAACTAACTTATGTCAA+TGG | + | chr4.1:18561153-18561172 | None:intergenic | 25.0% |
| ! | GTATAGTAAATAGATAGAGT+GGG | + | chr4.1:18561891-18561910 | None:intergenic | 25.0% |
| ! | TATACTTTGTAGTAAATCGA+TGG | - | chr4.1:18562184-18562203 | MS.gene36468:CDS | 25.0% |
| ! | TCAAACTAGTATCATGTTTA+TGG | + | chr4.1:18561061-18561080 | None:intergenic | 25.0% |
| ! | TGATATATTGTATACTCTTG+TGG | - | chr4.1:18560854-18560873 | MS.gene36468:intron | 25.0% |
| ! | TTGACTTATGCTTCATATAT+TGG | - | chr4.1:18561681-18561700 | MS.gene36468:intron | 25.0% |
| !! | GAACTTATGAAATTAGCTTA+TGG | - | chr4.1:18561186-18561205 | MS.gene36468:intron | 25.0% |
| !! | GTATCATATGATTTTTCTTG+TGG | - | chr4.1:18562289-18562308 | MS.gene36468:intron | 25.0% |
| !!! | ATTGACATAAGTTAGTTTTC+TGG | - | chr4.1:18561152-18561171 | MS.gene36468:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr4.1:18560749-18560768 | None:intergenic | 25.0% |
| !!! | TTGACATAAGTTAGTTTTCT+GGG | - | chr4.1:18561153-18561172 | MS.gene36468:intron | 25.0% |
| AAAATAAGCCGATAAAAGCT+TGG | + | chr4.1:18561220-18561239 | None:intergenic | 30.0% | |
| AAACTTAATTAGGGTCTGTT+TGG | + | chr4.1:18561401-18561420 | None:intergenic | 30.0% | |
| AAATAAGCCGATAAAAGCTT+GGG | + | chr4.1:18561219-18561238 | None:intergenic | 30.0% | |
| AATGGAAGATTGAATAAGTG+TGG | - | chr4.1:18560945-18560964 | MS.gene36468:intron | 30.0% | |
| ACAAGCAACATAACATTCAA+CGG | + | chr4.1:18562267-18562286 | None:intergenic | 30.0% | |
| ATTTGAGCAACCAATAGTTA+GGG | + | chr4.1:18562316-18562335 | None:intergenic | 30.0% | |
| CTTGTGGTTATAGGATATAT+TGG | - | chr4.1:18560870-18560889 | MS.gene36468:intron | 30.0% | |
| GGTATAGTAAATAGATAGAG+TGG | + | chr4.1:18561892-18561911 | None:intergenic | 30.0% | |
| TATAGTTCCTAACTTTCTTG+TGG | - | chr4.1:18561427-18561446 | MS.gene36468:intron | 30.0% | |
| TCAAACCGTTATTAATGGTT+GGG | - | chr4.1:18561811-18561830 | MS.gene36468:intron | 30.0% | |
| TCATATATTGGAAATCACTG+TGG | - | chr4.1:18561693-18561712 | MS.gene36468:intron | 30.0% | |
| TTCAAACCGTTATTAATGGT+TGG | - | chr4.1:18561810-18561829 | MS.gene36468:intron | 30.0% | |
| TTGTATACTCTTGTGGTTAT+AGG | - | chr4.1:18560861-18560880 | MS.gene36468:intron | 30.0% | |
| ! | CAATATTCCCAAGCTTTTAT+CGG | - | chr4.1:18561209-18561228 | MS.gene36468:intron | 30.0% |
| ! | TTATTATGCTTTTATGGGGT+GGG | - | chr4.1:18561845-18561864 | MS.gene36468:intron | 30.0% |
| !! | ATGTAGTTGACTCTATTTTG+TGG | - | chr4.1:18560810-18560829 | MS.gene36468:intron | 30.0% |
| !! | TGTAGTTGACTCTATTTTGT+GGG | - | chr4.1:18560811-18560830 | MS.gene36468:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+TGG | + | chr4.1:18560745-18560764 | None:intergenic | 30.0% |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | - | chr4.1:18561569-18561588 | MS.gene36468:intron | 30.0% |
| !!! | CTAGTAGGCTTTTAAAACTT+GGG | - | chr4.1:18561612-18561631 | MS.gene36468:intron | 30.0% |
| !!! | TCTAGTAGGCTTTTAAAACT+TGG | - | chr4.1:18561611-18561630 | MS.gene36468:intron | 30.0% |
| ACAGAAACCTGTTCTATATG+GGG | - | chr4.1:18562095-18562114 | MS.gene36468:CDS | 35.0% | |
| AGAATGACCACAAGAAAGTT+AGG | + | chr4.1:18561437-18561456 | None:intergenic | 35.0% | |
| AGACAGAAACCTGTTCTATA+TGG | - | chr4.1:18562093-18562112 | MS.gene36468:CDS | 35.0% | |
| ATACGCCCAACCATTAATAA+CGG | + | chr4.1:18561819-18561838 | None:intergenic | 35.0% | |
| ATATTGGAAATCACTGTGGT+AGG | - | chr4.1:18561697-18561716 | MS.gene36468:intron | 35.0% | |
| CCTACTAGACCTAACATAAA+GGG | + | chr4.1:18561600-18561619 | None:intergenic | 35.0% | |
| CTACTAGACCTAACATAAAG+GGG | + | chr4.1:18561599-18561618 | None:intergenic | 35.0% | |
| CTGAAGTTGCTATCATCATA+TGG | - | chr4.1:18562237-18562256 | MS.gene36468:intron | 35.0% | |
| GACAGAAACCTGTTCTATAT+GGG | - | chr4.1:18562094-18562113 | MS.gene36468:CDS | 35.0% | |
| GATTTGAGCAACCAATAGTT+AGG | + | chr4.1:18562317-18562336 | None:intergenic | 35.0% | |
| TAGTAAATAGATAGAGTGGG+AGG | + | chr4.1:18561888-18561907 | None:intergenic | 35.0% | |
| TGTTTGATCTCGACATAACA+AGG | + | chr4.1:18561531-18561550 | None:intergenic | 35.0% | |
| TTAATTAGGGTCTGTTTGGA+TGG | + | chr4.1:18561397-18561416 | None:intergenic | 35.0% | |
| TTGCTCAAATCATGCAGTTT+GGG | - | chr4.1:18562326-18562345 | MS.gene36468:CDS | 35.0% | |
| ! | CTTATTATGCTTTTATGGGG+TGG | - | chr4.1:18561844-18561863 | MS.gene36468:intron | 35.0% |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr4.1:18562406-18562425 | MS.gene36468:CDS | 35.0% |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr4.1:18561616-18561635 | MS.gene36468:intron | 35.0% |
| AGGATGGCCTAATCATAACT+TGG | + | chr4.1:18560729-18560748 | None:intergenic | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr4.1:18560697-18560716 | MS.gene36468:CDS | 40.0% | |
| ATTAGTCCTCGTTTCGATGT+TGG | - | chr4.1:18560972-18560991 | MS.gene36468:intron | 40.0% | |
| CAAATGTCTCACTCACTTAC+GGG | - | chr4.1:18561728-18561747 | MS.gene36468:intron | 40.0% | |
| CCAAATGTCTCACTCACTTA+CGG | - | chr4.1:18561727-18561746 | MS.gene36468:intron | 40.0% | |
| CCCTTTATGTTAGGTCTAGT+AGG | - | chr4.1:18561597-18561616 | MS.gene36468:intron | 40.0% | |
| CGTAAGTGAGTGAGACATTT+GGG | + | chr4.1:18561729-18561748 | None:intergenic | 40.0% | |
| CTAACATAAAGGGGAATTCC+AGG | + | chr4.1:18561590-18561609 | None:intergenic | 40.0% | |
| CTGGAATTCCCCTTTATGTT+AGG | - | chr4.1:18561588-18561607 | MS.gene36468:intron | 40.0% | |
| CTGTATTCCCCATATAGAAC+AGG | + | chr4.1:18562105-18562124 | None:intergenic | 40.0% | |
| CTTATCGTCATGCAAAAGCA+TGG | - | chr4.1:18560769-18560788 | MS.gene36468:intron | 40.0% | |
| GCCTACTAGACCTAACATAA+AGG | + | chr4.1:18561601-18561620 | None:intergenic | 40.0% | |
| GGTGGGAGTAGAATATTCAT+TGG | - | chr4.1:18561862-18561881 | MS.gene36468:intron | 40.0% | |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr4.1:18560994-18561013 | MS.gene36468:intron | 40.0% | |
| GTTGCTCAAATCATGCAGTT+TGG | - | chr4.1:18562325-18562344 | MS.gene36468:CDS | 40.0% | |
| TAAGTCAAGACAAACACTGC+CGG | + | chr4.1:18561669-18561688 | None:intergenic | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr4.1:18562372-18562391 | MS.gene36468:CDS | 40.0% | |
| TGTACAATGCTGAGAAACGT+GGG | - | chr4.1:18560698-18560717 | MS.gene36468:CDS | 40.0% | |
| TTCTTGTGGTCCCTAACTAT+TGG | - | chr4.1:18562303-18562322 | MS.gene36468:intron | 40.0% | |
| TTTGTGTACCACATTGACGT+TGG | - | chr4.1:18561457-18561476 | MS.gene36468:intron | 40.0% | |
| ! | CATGCTTTTGCATGACGATA+AGG | + | chr4.1:18560771-18560790 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr4.1:18560776-18560795 | MS.gene36468:intron | 40.0% |
| !! | AACTTGGGTTGGAATTGTAG+AGG | - | chr4.1:18561627-18561646 | MS.gene36468:intron | 40.0% |
| !! | ACTTGGGTTGGAATTGTAGA+GGG | - | chr4.1:18561628-18561647 | MS.gene36468:intron | 40.0% |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr4.1:18562405-18562424 | MS.gene36468:CDS | 40.0% |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr4.1:18560990-18561009 | MS.gene36468:intron | 40.0% |
| !! | TCGAATACGTTGATGATCAC+AGG | - | chr4.1:18560898-18560917 | MS.gene36468:intron | 40.0% |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr4.1:18561035-18561054 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | + | chr4.1:18561036-18561055 | None:intergenic | 40.0% |
| AGGGGTTAACCAGAACAATC+CGG | - | chr4.1:18561647-18561666 | MS.gene36468:intron | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr4.1:18562368-18562387 | None:intergenic | 45.0% | |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr4.1:18562352-18562371 | MS.gene36468:CDS | 45.0% | |
| CACTCACTTACGGGACTATT+TGG | - | chr4.1:18561737-18561756 | MS.gene36468:intron | 45.0% | |
| CAGGTCTGGCAAAATTGTTG+TGG | - | chr4.1:18560917-18560936 | MS.gene36468:intron | 45.0% | |
| CCGTAAGTGAGTGAGACATT+TGG | + | chr4.1:18561730-18561749 | None:intergenic | 45.0% | |
| GAGGCTAGGAGAAAGAATGT+TGG | - | chr4.1:18562391-18562410 | MS.gene36468:CDS | 45.0% | |
| GCTAGGAGAAAGAATGTTGG+TGG | - | chr4.1:18562394-18562413 | MS.gene36468:CDS | 45.0% | |
| TCAAGACTCCAACGTCAATG+TGG | + | chr4.1:18561468-18561487 | None:intergenic | 45.0% | |
| TCATGGATCATGAAGAGGCT+AGG | - | chr4.1:18562377-18562396 | MS.gene36468:CDS | 45.0% | |
| TTGACACCAACATCGAAACG+AGG | + | chr4.1:18560981-18561000 | None:intergenic | 45.0% | |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr4.1:18560780-18560799 | MS.gene36468:intron | 45.0% |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr4.1:18561003-18561022 | MS.gene36468:intron | 45.0% |
| !! | CTTGGGTTGGAATTGTAGAG+GGG | - | chr4.1:18561629-18561648 | MS.gene36468:intron | 45.0% |
| !! | GGAAGCGCCAAGTTATGATT+AGG | - | chr4.1:18560719-18560738 | MS.gene36468:CDS | 45.0% |
| !! | TACGTTGATGATCACAGGTC+TGG | - | chr4.1:18560903-18560922 | MS.gene36468:intron | 45.0% |
| !! | AAATTAAAATATTAAAAGAT+GGG | + | chr4.1:18562006-18562025 | None:intergenic | 5.0% |
| !! | TAAATTAAAATATTAAAAGA+TGG | + | chr4.1:18562007-18562026 | None:intergenic | 5.0% |
| CAAACACTGCCGGATTGTTC+TGG | + | chr4.1:18561659-18561678 | None:intergenic | 50.0% | |
| GACTACCTCTGCTGGTATCA+TGG | - | chr4.1:18562360-18562379 | MS.gene36468:CDS | 50.0% | |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr4.1:18561022-18561041 | MS.gene36468:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18560658 | 18562441 | 18560658 | ID=MS.gene36468 |
| chr4.1 | mRNA | 18560658 | 18562441 | 18560658 | ID=MS.gene36468.t1;Parent=MS.gene36468 |
| chr4.1 | exon | 18562309 | 18562441 | 18562309 | ID=MS.gene36468.t1.exon1;Parent=MS.gene36468.t1 |
| chr4.1 | CDS | 18562309 | 18562441 | 18562309 | ID=cds.MS.gene36468.t1;Parent=MS.gene36468.t1 |
| chr4.1 | exon | 18562056 | 18562216 | 18562056 | ID=MS.gene36468.t1.exon2;Parent=MS.gene36468.t1 |
| chr4.1 | CDS | 18562056 | 18562216 | 18562056 | ID=cds.MS.gene36468.t1;Parent=MS.gene36468.t1 |
| chr4.1 | exon | 18560658 | 18560756 | 18560658 | ID=MS.gene36468.t1.exon3;Parent=MS.gene36468.t1 |
| chr4.1 | CDS | 18560658 | 18560756 | 18560658 | ID=cds.MS.gene36468.t1;Parent=MS.gene36468.t1 |
| Gene Sequence |
| Protein sequence |
