Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58227.t1 | NP_001275136.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-68 | 266.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58227.t1 | P42798 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.6e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58227.t1 | A0A1U7YEG5 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-68 | 266.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene58227 | 0.801522 | 8.65E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene58227 | 0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene58227 | 0.815229 | 1.03E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene58227 | 0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene58227 | 0.822169 | 2.74E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene58227 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene049824 | MS.gene58227 | 0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene58227 | 0.816869 | 4.43E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene58227 | 0.866503 | 2.72E-65 | -1.69E-46 |
| MS.gene050253 | MS.gene58227 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene58227 | 0.819489 | 1.13E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene58227 | 0.82157 | 3.76E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene58227 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene58227 | 0.860925 | 1.47E-63 | -1.69E-46 |
| MS.gene050838 | MS.gene58227 | 0.921338 | 4.06E-88 | -1.69E-46 |
| MS.gene050945 | MS.gene58227 | 0.80041 | 1.46E-48 | -1.69E-46 |
| MS.gene050955 | MS.gene58227 | 0.834955 | 2.22E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene58227 | 0.851262 | 9.95E-61 | -1.69E-46 |
| MS.gene051063 | MS.gene58227 | 0.825229 | 5.25E-54 | -1.69E-46 |
| MS.gene051233 | MS.gene58227 | 0.840967 | 6.32E-58 | -1.69E-46 |
| MS.gene051234 | MS.gene58227 | 0.885201 | 9.97E-72 | -1.69E-46 |
| MS.gene051330 | MS.gene58227 | 0.805007 | 1.64E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene58227 | 0.830464 | 2.89E-55 | -1.69E-46 |
| MS.gene051642 | MS.gene58227 | 0.812356 | 4.42E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene58227 | 0.816998 | 4.14E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene58227 | 0.849309 | 3.51E-60 | -1.69E-46 |
| MS.gene051700 | MS.gene58227 | 0.857087 | 2.07E-62 | -1.69E-46 |
| MS.gene051746 | MS.gene58227 | 0.887461 | 1.40E-72 | -1.69E-46 |
| MS.gene051748 | MS.gene58227 | 0.888539 | 5.40E-73 | -1.69E-46 |
| MS.gene051756 | MS.gene58227 | 0.815846 | 7.50E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene58227 | 0.87867 | 2.33E-69 | -1.69E-46 |
| MS.gene051885 | MS.gene58227 | 0.873579 | 1.32E-67 | -1.69E-46 |
| MS.gene05188 | MS.gene58227 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene58227 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene58227 | 0.890672 | 7.97E-74 | -1.69E-46 |
| MS.gene051975 | MS.gene58227 | 0.828494 | 8.71E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene58227 | 0.825687 | 4.09E-54 | -1.69E-46 |
| MS.gene052133 | MS.gene58227 | 0.837105 | 6.33E-57 | -1.69E-46 |
| MS.gene052296 | MS.gene58227 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene58227 | 0.8536 | 2.15E-61 | -1.69E-46 |
| MS.gene052479 | MS.gene58227 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene052818 | MS.gene58227 | -0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene58227 | 0.891717 | 3.08E-74 | -1.69E-46 |
| MS.gene053058 | MS.gene58227 | 0.830896 | 2.27E-55 | -1.69E-46 |
| MS.gene053109 | MS.gene58227 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene053122 | MS.gene58227 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene58227 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene58227 | 0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene58227 | 0.85518 | 7.50E-62 | -1.69E-46 |
| MS.gene053677 | MS.gene58227 | 0.801654 | 8.13E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene58227 | 0.831619 | 1.51E-55 | -1.69E-46 |
| MS.gene053952 | MS.gene58227 | 0.881506 | 2.27E-70 | -1.69E-46 |
| MS.gene054250 | MS.gene58227 | 0.834317 | 3.21E-56 | -1.69E-46 |
| MS.gene054403 | MS.gene58227 | 0.86124 | 1.18E-63 | -1.69E-46 |
| MS.gene05469 | MS.gene58227 | 0.814358 | 1.60E-51 | -1.69E-46 |
| MS.gene054937 | MS.gene58227 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene055162 | MS.gene58227 | 0.802791 | 4.74E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene58227 | 0.81047 | 1.13E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene58227 | 0.805489 | 1.30E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene58227 | 0.84394 | 1.03E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene58227 | 0.819239 | 1.29E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene58227 | 0.802827 | 4.66E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene58227 | 0.825961 | 3.52E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene58227 | 0.854612 | 1.10E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene58227 | -0.839529 | 1.50E-57 | -1.69E-46 |
| MS.gene055603 | MS.gene58227 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene58227 | -0.863201 | 2.95E-64 | -1.69E-46 |
| MS.gene056075 | MS.gene58227 | 0.916593 | 1.48E-85 | -1.69E-46 |
| MS.gene056091 | MS.gene58227 | 0.816148 | 6.42E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene58227 | 0.815374 | 9.55E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene58227 | 0.821184 | 4.62E-53 | -1.69E-46 |
| MS.gene056522 | MS.gene58227 | -0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene056605 | MS.gene58227 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene58227 | 0.83283 | 7.56E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene58227 | 0.828792 | 7.38E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene58227 | 0.813994 | 1.93E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene58227 | 0.895538 | 8.72E-76 | -1.69E-46 |
| MS.gene057102 | MS.gene58227 | 0.850488 | 1.64E-60 | -1.69E-46 |
| MS.gene057234 | MS.gene58227 | 0.828314 | 9.63E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene58227 | 0.867311 | 1.50E-65 | -1.69E-46 |
| MS.gene05781 | MS.gene58227 | 0.831606 | 1.52E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene58227 | 0.814499 | 1.49E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene58227 | 0.803402 | 3.55E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene58227 | 0.852081 | 5.83E-61 | -1.69E-46 |
| MS.gene058149 | MS.gene58227 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene58227 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene58227 | 0.823893 | 1.08E-53 | -1.69E-46 |
| MS.gene058720 | MS.gene58227 | 0.823296 | 1.50E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene58227 | 0.849534 | 3.04E-60 | -1.69E-46 |
| MS.gene058906 | MS.gene58227 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene58227 | 0.830292 | 3.19E-55 | -1.69E-46 |
| MS.gene059171 | MS.gene58227 | 0.865332 | 6.38E-65 | -1.69E-46 |
| MS.gene059227 | MS.gene58227 | 0.8858 | 5.95E-72 | -1.69E-46 |
| MS.gene059726 | MS.gene58227 | 0.827004 | 1.99E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene58227 | 0.90071 | 5.58E-78 | -1.69E-46 |
| MS.gene06011 | MS.gene58227 | 0.86198 | 7.00E-64 | -1.69E-46 |
| MS.gene060429 | MS.gene58227 | 0.817867 | 2.64E-52 | -1.69E-46 |
| MS.gene060465 | MS.gene58227 | 0.802265 | 6.09E-49 | -1.69E-46 |
| MS.gene060574 | MS.gene58227 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene58227 | 0.870953 | 9.88E-67 | -1.69E-46 |
| MS.gene060830 | MS.gene58227 | 0.808596 | 2.87E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene58227 | 0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene58227 | 0.832202 | 1.08E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06172 | MS.gene58227 | PPI |
| MS.gene041458 | MS.gene58227 | PPI |
| MS.gene36468 | MS.gene58227 | PPI |
| MS.gene58227 | MS.gene049026 | PPI |
| MS.gene036595 | MS.gene58227 | PPI |
| MS.gene028323 | MS.gene58227 | PPI |
| MS.gene58227 | MS.gene023130 | PPI |
| MS.gene35135 | MS.gene58227 | PPI |
| MS.gene58719 | MS.gene58227 | PPI |
| MS.gene58227 | MS.gene06172 | PPI |
| MS.gene55887 | MS.gene58227 | PPI |
| MS.gene20156 | MS.gene58227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58227.t1 | MTR_4g117470 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.05e-93 | 266 |
| MS.gene58227.t1 | MTR_4g094598 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene58227.t1 | MTR_1g105415 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene58227.t1 | MTR_8g101910 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 1.82e-45 | 144 |
| MS.gene58227.t1 | MTR_8g101910 | 49.474 | 95 | 48 | 0 | 6 | 100 | 5 | 99 | 1.72e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58227.t1 | AT5G59850 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene58227.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene58227.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene58227.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene58227.t1 | AT3G46040 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 4.03e-92 | 262 |
| MS.gene58227.t1 | AT2G39590 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.30e-87 | 249 |
| MS.gene58227.t1 | AT4G29430 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 2.98e-47 | 149 |
| MS.gene58227.t1 | AT2G19720 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 3.11e-45 | 144 |
Find 30 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCACTTCTGCTGGTATTA+TGG | 0.215449 | 8.3:+8397577 | MS.gene58227:CDS |
| TTATGCTTTATAGGTTATAT+TGG | 0.301097 | 8.3:+8396370 | MS.gene58227:intron |
| TATGATTAGGCCTTCCTCTA+AGG | 0.335085 | 8.3:+8396168 | MS.gene58227:CDS |
| GAATTTGATGATAACCTTAG+AGG | 0.407415 | 8.3:-8396182 | None:intergenic |
| GAAAGCGTCAAGTTATGATT+AGG | 0.452540 | 8.3:+8396155 | MS.gene58227:CDS |
| TATGTTGATGATCACAGATC+TGG | 0.452973 | 8.3:+8396403 | MS.gene58227:CDS |
| GGTCCTTGGCTTCTTCTACT+AGG | 0.468896 | 8.3:+8397637 | MS.gene58227:CDS |
| AATGTTGGTGGTAAGGTCCT+TGG | 0.482167 | 8.3:+8397623 | MS.gene58227:CDS |
| AAAATCGTTGTTGAATTGAA+TGG | 0.485579 | 8.3:+8396427 | MS.gene58227:CDS |
| GAGAAAGAATGTTGGTGGTA+AGG | 0.495772 | 8.3:+8397616 | MS.gene58227:CDS |
| ATGGTAGGTTGAACAAATGT+GGG | 0.519393 | 8.3:+8396446 | MS.gene58227:CDS |
| ATCCATAATACCAGCAGAAG+TGG | 0.531152 | 8.3:-8397579 | None:intergenic |
| TAGACTTCTCCCTTCCAGAC+AGG | 0.537117 | 8.3:+8396522 | MS.gene58227:CDS |
| ATGTACAATGCTGAGAAAAG+AGG | 0.544704 | 8.3:+8396133 | MS.gene58227:CDS |
| TTCAACTGACCTGTCTGGAA+GGG | 0.545440 | 8.3:-8396531 | None:intergenic |
| TTTCAACTGACCTGTCTGGA+AGG | 0.549780 | 8.3:-8396532 | None:intergenic |
| ATGTTGATGATCACAGATCT+GGG | 0.565212 | 8.3:+8396404 | MS.gene58227:CDS |
| GCTAGGAGAAAGAATGTTGG+TGG | 0.567141 | 8.3:+8397611 | MS.gene58227:CDS |
| TAGCCTAGTAGAAGAAGCCA+AGG | 0.575489 | 8.3:-8397640 | None:intergenic |
| AATGGTAGGTTGAACAAATG+TGG | 0.577364 | 8.3:+8396445 | MS.gene58227:CDS |
| GAGGCTAGGAGAAAGAATGT+TGG | 0.584494 | 8.3:+8397608 | MS.gene58227:CDS |
| TTATGGATCATGAAGAGGCT+AGG | 0.585160 | 8.3:+8397594 | MS.gene58227:CDS |
| TTGATGATAACCTTAGAGGA+AGG | 0.606187 | 8.3:-8396178 | None:intergenic |
| TGGTATTATGGATCATGAAG+AGG | 0.606467 | 8.3:+8397589 | MS.gene58227:CDS |
| GTCGGTGTCAAGGAGATTGA+AGG | 0.613514 | 8.3:+8396490 | MS.gene58227:CDS |
| TCGTTGTTGAATTGAATGGT+AGG | 0.614641 | 8.3:+8396431 | MS.gene58227:CDS |
| CAAAACACTGACTCTCACCA+TGG | 0.638914 | 8.3:-8396092 | None:intergenic |
| GTGTCAAGGAGATTGAAGGT+TGG | 0.653545 | 8.3:+8396494 | MS.gene58227:CDS |
| TGGTAGGTTGAACAAATGTG+GGG | 0.708928 | 8.3:+8396447 | MS.gene58227:CDS |
| TTGACACCGACATCAAAACG+AGG | 0.734537 | 8.3:-8396478 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATAATAACAATTTA+AGG | - | chr8.3:8397443-8397462 | None:intergenic | 10.0% |
| !! | ATAATATAAAATATGCAGTT+TGG | + | chr8.3:8397542-8397561 | MS.gene58227:intron | 15.0% |
| !! | CTAAAATTGATCATAAAAAA+CGG | - | chr8.3:8397320-8397339 | None:intergenic | 15.0% |
| !!! | AACTTAATTTATCTTTTGAT+AGG | + | chr8.3:8396731-8396750 | MS.gene58227:intron | 15.0% |
| !!! | TGAAAACAATACTAATTTTT+GGG | + | chr8.3:8396550-8396569 | MS.gene58227:intron | 15.0% |
| !!! | TTGAAAACAATACTAATTTT+TGG | + | chr8.3:8396549-8396568 | MS.gene58227:intron | 15.0% |
| !!! | TTGATTTGATATAATTTTGT+GGG | + | chr8.3:8396295-8396314 | MS.gene58227:intron | 15.0% |
| !!! | TTTGATTTGATATAATTTTG+TGG | + | chr8.3:8396294-8396313 | MS.gene58227:intron | 15.0% |
| !!! | TTTGATTTGATATATTTTGT+GGG | + | chr8.3:8396347-8396366 | MS.gene58227:intron | 15.0% |
| !!! | TTTTGATTTGATATATTTTG+TGG | + | chr8.3:8396346-8396365 | MS.gene58227:intron | 15.0% |
| !! | AAAACTAATAAATGTTGCAT+TGG | - | chr8.3:8396842-8396861 | None:intergenic | 20.0% |
| !! | GGATGAAATTCATTAAATAA+GGG | - | chr8.3:8396879-8396898 | None:intergenic | 20.0% |
| !! | TGGATGAAATTCATTAAATA+AGG | - | chr8.3:8396880-8396899 | None:intergenic | 20.0% |
| !! | TTATGCTTTATAGGTTATAT+TGG | + | chr8.3:8396370-8396389 | MS.gene58227:intron | 20.0% |
| !! | TTGCATGATTCAATTATTTA+GGG | + | chr8.3:8396270-8396289 | MS.gene58227:intron | 20.0% |
| !!! | AAAAAACGGAGATTTTTTTT+AGG | - | chr8.3:8397306-8397325 | None:intergenic | 20.0% |
| !!! | AGGAAAAAAAAAGATTTTAG+AGG | - | chr8.3:8396239-8396258 | None:intergenic | 20.0% |
| !!! | ATTAAATAAGGGTATAATAG+TGG | - | chr8.3:8396868-8396887 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTCAA+TGG | - | chr8.3:8396963-8396982 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCCTTTCATTGA+AGG | + | chr8.3:8396247-8396266 | MS.gene58227:intron | 20.0% |
| ! | AAAATCGTTGTTGAATTGAA+TGG | + | chr8.3:8396427-8396446 | MS.gene58227:CDS | 25.0% |
| ! | ATTGAACTTATATGAACGTT+GGG | + | chr8.3:8397469-8397488 | MS.gene58227:intron | 25.0% |
| ! | GTTGCATGATTCAATTATTT+AGG | + | chr8.3:8396269-8396288 | MS.gene58227:intron | 25.0% |
| ! | TATAGTTTCTTACTCCTATT+TGG | + | chr8.3:8397252-8397271 | MS.gene58227:intron | 25.0% |
| ! | TATTGAACTTATATGAACGT+TGG | + | chr8.3:8397468-8397487 | MS.gene58227:intron | 25.0% |
| ! | TCATGCTTCATATTAAAGAT+TGG | + | chr8.3:8397216-8397235 | MS.gene58227:intron | 25.0% |
| !! | TATAATTTTGTGGGTATGTT+TGG | + | chr8.3:8396304-8396323 | MS.gene58227:intron | 25.0% |
| !! | TGATTTGGAACAAATTTACT+CGG | - | chr8.3:8397189-8397208 | None:intergenic | 25.0% |
| !!! | TCACAATATTAGTCGTTTTA+AGG | - | chr8.3:8397010-8397029 | None:intergenic | 25.0% |
| !!! | TCAGCTTATTTTCATAAACA+TGG | + | chr8.3:8396682-8396701 | MS.gene58227:intron | 25.0% |
| !!! | TTTGGTGGTTCAATTTTTTA+GGG | + | chr8.3:8396322-8396341 | MS.gene58227:intron | 25.0% |
| AAACGACTAATATTGTGAGA+CGG | + | chr8.3:8397012-8397031 | MS.gene58227:intron | 30.0% | |
| AAGCATGAACTATCATGATT+TGG | - | chr8.3:8397204-8397223 | None:intergenic | 30.0% | |
| AAGTTCACACAAATATGCAT+TGG | - | chr8.3:8397117-8397136 | None:intergenic | 30.0% | |
| ACACCCTTATTAATTGTAGT+TGG | - | chr8.3:8396917-8396936 | None:intergenic | 30.0% | |
| ATTTACTCGGCTTAACAAAA+TGG | - | chr8.3:8397176-8397195 | None:intergenic | 30.0% | |
| CATAGCTATATGTAAGAACA+TGG | - | chr8.3:8397078-8397097 | None:intergenic | 30.0% | |
| CCACCAACTACAATTAATAA+GGG | + | chr8.3:8396911-8396930 | MS.gene58227:intron | 30.0% | |
| TCCACCAACTACAATTAATA+AGG | + | chr8.3:8396910-8396929 | MS.gene58227:intron | 30.0% | |
| TTTGGGAGAACTTATGAAAA+CGG | + | chr8.3:8396634-8396653 | MS.gene58227:intron | 30.0% | |
| ! | GAATTTGATGATAACCTTAG+AGG | - | chr8.3:8396185-8396204 | None:intergenic | 30.0% |
| !! | TTTTGTGGGTTATGCTTTAT+AGG | + | chr8.3:8396361-8396380 | MS.gene58227:intron | 30.0% |
| !!! | GTTTGGTGGTTCAATTTTTT+AGG | + | chr8.3:8396321-8396340 | MS.gene58227:intron | 30.0% |
| AAGGTTGTGCACGATTATTA+AGG | - | chr8.3:8396991-8397010 | None:intergenic | 35.0% | |
| ACACAAATATGCATTGGAAG+TGG | - | chr8.3:8397111-8397130 | None:intergenic | 35.0% | |
| AGACAATAATTGTGAGACAG+AGG | - | chr8.3:8396773-8396792 | None:intergenic | 35.0% | |
| AGTAAGCTGTTTATCCAAAC+AGG | + | chr8.3:8397051-8397070 | MS.gene58227:intron | 35.0% | |
| ATCATGCAACCTTCAATGAA+AGG | - | chr8.3:8396259-8396278 | None:intergenic | 35.0% | |
| ATGTACAATGCTGAGAAAAG+AGG | + | chr8.3:8396133-8396152 | MS.gene58227:CDS | 35.0% | |
| CCCTTATTAATTGTAGTTGG+TGG | - | chr8.3:8396914-8396933 | None:intergenic | 35.0% | |
| CTCATCGTTATGCAAAAACA+CGG | + | chr8.3:8396205-8396224 | MS.gene58227:CDS | 35.0% | |
| GAAACAACACTACACACAAA+AGG | - | chr8.3:8397500-8397519 | None:intergenic | 35.0% | |
| GACAATAATTGTGAGACAGA+GGG | - | chr8.3:8396772-8396791 | None:intergenic | 35.0% | |
| TATCACCTGTGAGAATGTTT+GGG | + | chr8.3:8396617-8396636 | MS.gene58227:intron | 35.0% | |
| TCGTTGTTGAATTGAATGGT+AGG | + | chr8.3:8396431-8396450 | MS.gene58227:CDS | 35.0% | |
| TGGTATTATGGATCATGAAG+AGG | + | chr8.3:8397589-8397608 | MS.gene58227:CDS | 35.0% | |
| TTATCACCTGTGAGAATGTT+TGG | + | chr8.3:8396616-8396635 | MS.gene58227:intron | 35.0% | |
| TTTGTCCACAAAGACCAAAT+AGG | - | chr8.3:8397269-8397288 | None:intergenic | 35.0% | |
| ! | AATGGTAGGTTGAACAAATG+TGG | + | chr8.3:8396445-8396464 | MS.gene58227:CDS | 35.0% |
| ! | AATTTTGTGGGTATGTTTGG+TGG | + | chr8.3:8396307-8396326 | MS.gene58227:intron | 35.0% |
| ! | ATGGTAGGTTGAACAAATGT+GGG | + | chr8.3:8396446-8396465 | MS.gene58227:CDS | 35.0% |
| ! | ATTTGTTGCTTGGATGATCT+AGG | + | chr8.3:8397392-8397411 | MS.gene58227:intron | 35.0% |
| ! | TTACTCCTATTTGGTCTTTG+TGG | + | chr8.3:8397261-8397280 | MS.gene58227:intron | 35.0% |
| ! | TTGATGATAACCTTAGAGGA+AGG | - | chr8.3:8396181-8396200 | None:intergenic | 35.0% |
| !! | ATGTTGATGATCACAGATCT+GGG | + | chr8.3:8396404-8396423 | MS.gene58227:CDS | 35.0% |
| !! | ATTAGTCCTCGTTTTGATGT+CGG | + | chr8.3:8396472-8396491 | MS.gene58227:CDS | 35.0% |
| !! | GAAAGCGTCAAGTTATGATT+AGG | + | chr8.3:8396155-8396174 | MS.gene58227:CDS | 35.0% |
| !! | TATGTTGATGATCACAGATC+TGG | + | chr8.3:8396403-8396422 | MS.gene58227:CDS | 35.0% |
| !! | TCAATTTTAGCCTCTACTAG+AGG | + | chr8.3:8397330-8397349 | MS.gene58227:intron | 35.0% |
| !! | TCTGTCAACAATTTGTTGCT+TGG | + | chr8.3:8397382-8397401 | MS.gene58227:intron | 35.0% |
| ATCCATAATACCAGCAGAAG+TGG | - | chr8.3:8397582-8397601 | None:intergenic | 40.0% | |
| CACATAAAAGCCTCTAGTAG+AGG | - | chr8.3:8397343-8397362 | None:intergenic | 40.0% | |
| GACTAATATTGTGAGACGGA+GGG | + | chr8.3:8397016-8397035 | MS.gene58227:intron | 40.0% | |
| TATGATTAGGCCTTCCTCTA+AGG | + | chr8.3:8396168-8396187 | MS.gene58227:CDS | 40.0% | |
| TGTAAGAACATGGTCCTGTT+TGG | - | chr8.3:8397068-8397087 | None:intergenic | 40.0% | |
| TTATGGATCATGAAGAGGCT+AGG | + | chr8.3:8397594-8397613 | MS.gene58227:CDS | 40.0% | |
| ! | CTACTAGAGGCTTTTATGTG+TGG | + | chr8.3:8397343-8397362 | MS.gene58227:intron | 40.0% |
| ! | CTTCAGTGTTATCGATTGCA+TGG | + | chr8.3:8397147-8397166 | MS.gene58227:intron | 40.0% |
| ! | TGGTAGGTTGAACAAATGTG+GGG | + | chr8.3:8396447-8396466 | MS.gene58227:CDS | 40.0% |
| ! | TTCTTTTGCATAGTGTCTGC+TGG | + | chr8.3:8396576-8396595 | MS.gene58227:intron | 40.0% |
| ! | TTGTTTTCAACTGACCTGTC+TGG | - | chr8.3:8396539-8396558 | None:intergenic | 40.0% |
| !! | AGTTGGTGGAGTAGTTAAGT+TGG | - | chr8.3:8396900-8396919 | None:intergenic | 40.0% |
| !! | CGTGTTTTTGCATAACGATG+AGG | - | chr8.3:8396207-8396226 | None:intergenic | 40.0% |
| !! | GAGAAAGAATGTTGGTGGTA+AGG | + | chr8.3:8397616-8397635 | MS.gene58227:CDS | 40.0% |
| !!! | ATTGTTTTGACCACTTCTGC+TGG | + | chr8.3:8397569-8397588 | MS.gene58227:CDS | 40.0% |
| CGACTAATATTGTGAGACGG+AGG | + | chr8.3:8397015-8397034 | MS.gene58227:intron | 45.0% | |
| GACCACTTCTGCTGGTATTA+TGG | + | chr8.3:8397577-8397596 | MS.gene58227:CDS | 45.0% | |
| GAGGCTAGGAGAAAGAATGT+TGG | + | chr8.3:8397608-8397627 | MS.gene58227:CDS | 45.0% | |
| GCTAGGAGAAAGAATGTTGG+TGG | + | chr8.3:8397611-8397630 | MS.gene58227:CDS | 45.0% | |
| GTGTCAAGGAGATTGAAGGT+TGG | + | chr8.3:8396494-8396513 | MS.gene58227:CDS | 45.0% | |
| GTTCTCCCAAACATTCTCAC+AGG | - | chr8.3:8396625-8396644 | None:intergenic | 45.0% | |
| TTCAACTGACCTGTCTGGAA+GGG | - | chr8.3:8396534-8396553 | None:intergenic | 45.0% | |
| TTGACACCGACATCAAAACG+AGG | - | chr8.3:8396481-8396500 | None:intergenic | 45.0% | |
| TTTCAACTGACCTGTCTGGA+AGG | - | chr8.3:8396535-8396554 | None:intergenic | 45.0% | |
| !! | AATGTTGGTGGTAAGGTCCT+TGG | + | chr8.3:8397623-8397642 | MS.gene58227:CDS | 45.0% |
| !!! | TCGTTTTGATGTCGGTGTCA+AGG | + | chr8.3:8396480-8396499 | MS.gene58227:CDS | 45.0% |
| !! | TTTATATTATAAAAATGTAA+GGG | - | chr8.3:8397532-8397551 | None:intergenic | 5.0% |
| !!! | TTTTATATTATAAAAATGTA+AGG | - | chr8.3:8397533-8397552 | None:intergenic | 5.0% |
| TAGACTTCTCCCTTCCAGAC+AGG | + | chr8.3:8396522-8396541 | MS.gene58227:CDS | 50.0% | |
| !! | GTCGGTGTCAAGGAGATTGA+AGG | + | chr8.3:8396490-8396509 | MS.gene58227:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8396094 | 8397658 | 8396094 | ID=MS.gene58227 |
| chr8.3 | mRNA | 8396094 | 8397658 | 8396094 | ID=MS.gene58227.t1;Parent=MS.gene58227 |
| chr8.3 | exon | 8396094 | 8396226 | 8396094 | ID=MS.gene58227.t1.exon1;Parent=MS.gene58227.t1 |
| chr8.3 | CDS | 8396094 | 8396226 | 8396094 | ID=cds.MS.gene58227.t1;Parent=MS.gene58227.t1 |
| chr8.3 | exon | 8396383 | 8396543 | 8396383 | ID=MS.gene58227.t1.exon2;Parent=MS.gene58227.t1 |
| chr8.3 | CDS | 8396383 | 8396543 | 8396383 | ID=cds.MS.gene58227.t1;Parent=MS.gene58227.t1 |
| chr8.3 | exon | 8397560 | 8397658 | 8397560 | ID=MS.gene58227.t1.exon3;Parent=MS.gene58227.t1 |
| chr8.3 | CDS | 8397560 | 8397658 | 8397560 | ID=cds.MS.gene58227.t1;Parent=MS.gene58227.t1 |
| Gene Sequence |
| Protein sequence |
