Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35135.t1 | NP_001275136.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-68 | 266.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35135.t1 | P42798 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.6e-70 | 265.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35135.t1 | A0A1U7YEG5 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-68 | 266.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35135 | 0.809776 | 1.60E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene35135 | 0.825236 | 5.23E-54 | -1.69E-46 |
| MS.gene049255 | MS.gene35135 | 0.854092 | 1.55E-61 | -1.69E-46 |
| MS.gene049340 | MS.gene35135 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene35135 | 0.858896 | 6.01E-63 | -1.69E-46 |
| MS.gene049501 | MS.gene35135 | 0.840815 | 6.93E-58 | -1.69E-46 |
| MS.gene049756 | MS.gene35135 | 0.802618 | 5.15E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene35135 | 0.82608 | 3.30E-54 | -1.69E-46 |
| MS.gene049824 | MS.gene35135 | 0.814595 | 1.42E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene35135 | 0.842601 | 2.34E-58 | -1.69E-46 |
| MS.gene049850 | MS.gene35135 | 0.816028 | 6.83E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene35135 | 0.847306 | 1.26E-59 | -1.69E-46 |
| MS.gene050020 | MS.gene35135 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene35135 | 0.841948 | 3.49E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene35135 | 0.866115 | 3.61E-65 | -1.69E-46 |
| MS.gene050689 | MS.gene35135 | 0.815858 | 7.45E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene35135 | 0.801973 | 6.99E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene35135 | 0.805693 | 1.18E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene35135 | 0.834066 | 3.72E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene35135 | 0.858433 | 8.27E-63 | -1.69E-46 |
| MS.gene050838 | MS.gene35135 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene35135 | 0.812754 | 3.61E-51 | -1.69E-46 |
| MS.gene051243 | MS.gene35135 | 0.805096 | 1.57E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene35135 | 0.85481 | 9.60E-62 | -1.69E-46 |
| MS.gene051328 | MS.gene35135 | 0.880928 | 3.66E-70 | -1.69E-46 |
| MS.gene051330 | MS.gene35135 | 0.824556 | 7.57E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene35135 | 0.850122 | 2.08E-60 | -1.69E-46 |
| MS.gene051388 | MS.gene35135 | 0.810293 | 1.24E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene35135 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene35135 | 0.857245 | 1.86E-62 | -1.69E-46 |
| MS.gene051719 | MS.gene35135 | 0.820764 | 5.77E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene35135 | 0.832847 | 7.48E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene35135 | 0.834334 | 3.18E-56 | -1.69E-46 |
| MS.gene051746 | MS.gene35135 | 0.818301 | 2.10E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene35135 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene051791 | MS.gene35135 | 0.831989 | 1.22E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene35135 | 0.858963 | 5.74E-63 | -1.69E-46 |
| MS.gene051975 | MS.gene35135 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene052012 | MS.gene35135 | 0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene35135 | 0.803897 | 2.80E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene35135 | 0.840463 | 8.56E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene35135 | 0.821681 | 3.55E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene35135 | 0.811337 | 7.37E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene35135 | 0.839513 | 1.51E-57 | -1.69E-46 |
| MS.gene052561 | MS.gene35135 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene35135 | 0.814786 | 1.29E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene35135 | 0.822886 | 1.86E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene35135 | 0.823434 | 1.39E-53 | -1.69E-46 |
| MS.gene052879 | MS.gene35135 | 0.825237 | 5.23E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene35135 | 0.815678 | 8.17E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene35135 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene052947 | MS.gene35135 | 0.874909 | 4.67E-68 | -1.69E-46 |
| MS.gene053008 | MS.gene35135 | 0.824693 | 7.03E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene35135 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene35135 | 0.854448 | 1.22E-61 | -1.69E-46 |
| MS.gene053581 | MS.gene35135 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene35135 | 0.801868 | 7.35E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene35135 | 0.815612 | 8.45E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene35135 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene35135 | 0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene35135 | 0.801963 | 7.03E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene35135 | 0.813444 | 2.55E-51 | -1.69E-46 |
| MS.gene054967 | MS.gene35135 | 0.809799 | 1.58E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene35135 | 0.824607 | 7.36E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene35135 | 0.808774 | 2.63E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene35135 | 0.83151 | 1.60E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene35135 | 0.869957 | 2.10E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene35135 | 0.860095 | 2.62E-63 | -1.69E-46 |
| MS.gene055512 | MS.gene35135 | 0.834609 | 2.71E-56 | -1.69E-46 |
| MS.gene055537 | MS.gene35135 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene35135 | 0.813669 | 2.28E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene35135 | -0.881061 | 3.28E-70 | -1.69E-46 |
| MS.gene055608 | MS.gene35135 | 0.831839 | 1.33E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene35135 | 0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene35135 | 0.83676 | 7.75E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene35135 | 0.869697 | 2.55E-66 | -1.69E-46 |
| MS.gene055818 | MS.gene35135 | 0.818032 | 2.42E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene35135 | -0.874534 | 6.26E-68 | -1.69E-46 |
| MS.gene056091 | MS.gene35135 | 0.857739 | 1.33E-62 | -1.69E-46 |
| MS.gene056215 | MS.gene35135 | 0.866787 | 2.21E-65 | -1.69E-46 |
| MS.gene056366 | MS.gene35135 | 0.80903 | 2.31E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene35135 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene35135 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene35135 | 0.81841 | 1.99E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene35135 | 0.884896 | 1.30E-71 | -1.69E-46 |
| MS.gene056642 | MS.gene35135 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene35135 | 0.825503 | 4.53E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene35135 | 0.804879 | 1.75E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene35135 | 0.814556 | 1.45E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene35135 | 0.828565 | 8.38E-55 | -1.69E-46 |
| MS.gene057314 | MS.gene35135 | 0.804553 | 2.04E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene35135 | 0.850652 | 1.48E-60 | -1.69E-46 |
| MS.gene057705 | MS.gene35135 | 0.855576 | 5.75E-62 | -1.69E-46 |
| MS.gene057915 | MS.gene35135 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene35135 | 0.828603 | 8.20E-55 | -1.69E-46 |
| MS.gene058084 | MS.gene35135 | 0.844308 | 8.19E-59 | -1.69E-46 |
| MS.gene058168 | MS.gene35135 | 0.814335 | 1.62E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene35135 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene35135 | 0.801787 | 7.63E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene35135 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene35135 | 0.80095 | 1.13E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene35135 | 0.87318 | 1.80E-67 | -1.69E-46 |
| MS.gene058908 | MS.gene35135 | 0.801427 | 9.05E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene35135 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene35135 | 0.829032 | 6.46E-55 | -1.69E-46 |
| MS.gene059249 | MS.gene35135 | 0.818978 | 1.48E-52 | -1.69E-46 |
| MS.gene05950 | MS.gene35135 | 0.802017 | 6.85E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene35135 | 0.806343 | 8.61E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene35135 | 0.859839 | 3.13E-63 | -1.69E-46 |
| MS.gene059625 | MS.gene35135 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene35135 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene35135 | 0.802747 | 4.85E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene35135 | 0.841687 | 4.09E-58 | -1.69E-46 |
| MS.gene059937 | MS.gene35135 | 0.820352 | 7.18E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene35135 | 0.891002 | 5.91E-74 | -1.69E-46 |
| MS.gene060101 | MS.gene35135 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene35135 | 0.810408 | 1.17E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene35135 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene35135 | 0.805379 | 1.37E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene35135 | 0.92872 | 1.94E-92 | -1.69E-46 |
| MS.gene060521 | MS.gene35135 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene060586 | MS.gene35135 | 0.833879 | 4.14E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene35135 | 0.82786 | 1.24E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene35135 | 0.812554 | 4.00E-51 | -1.69E-46 |
| MS.gene060907 | MS.gene35135 | 0.80811 | 3.64E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene35135 | 0.854699 | 1.03E-61 | -1.69E-46 |
| MS.gene061176 | MS.gene35135 | 0.800686 | 1.28E-48 | -1.69E-46 |
| MS.gene061178 | MS.gene35135 | 0.800125 | 1.67E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35135 | MS.gene55887 | PPI |
| MS.gene35135 | MS.gene36468 | PPI |
| MS.gene35135 | MS.gene20156 | PPI |
| MS.gene35135 | MS.gene049026 | PPI |
| MS.gene028323 | MS.gene35135 | PPI |
| MS.gene35135 | MS.gene023130 | PPI |
| MS.gene35135 | MS.gene028323 | PPI |
| MS.gene35135 | MS.gene06172 | PPI |
| MS.gene35135 | MS.gene041458 | PPI |
| MS.gene55887 | MS.gene35135 | PPI |
| MS.gene35135 | MS.gene58227 | PPI |
| MS.gene35135 | MS.gene58719 | PPI |
| MS.gene35135 | MS.gene036595 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35135.t1 | MTR_4g117470 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.05e-93 | 266 |
| MS.gene35135.t1 | MTR_4g094598 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene35135.t1 | MTR_1g105415 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.82e-93 | 265 |
| MS.gene35135.t1 | MTR_8g101910 | 52.000 | 125 | 60 | 0 | 6 | 130 | 5 | 129 | 1.82e-45 | 144 |
| MS.gene35135.t1 | MTR_8g101910 | 49.474 | 95 | 48 | 0 | 6 | 100 | 5 | 99 | 1.72e-28 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35135.t1 | AT5G59850 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene35135.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene35135.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene35135.t1 | AT1G07770 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.76e-93 | 265 |
| MS.gene35135.t1 | AT3G46040 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 4.03e-92 | 262 |
| MS.gene35135.t1 | AT2G39590 | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 4.30e-87 | 249 |
| MS.gene35135.t1 | AT4G29430 | 54.400 | 125 | 57 | 0 | 6 | 130 | 5 | 129 | 2.98e-47 | 149 |
| MS.gene35135.t1 | AT2G19720 | 53.600 | 125 | 58 | 0 | 6 | 130 | 5 | 129 | 3.11e-45 | 144 |
Find 28 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTGGTTATAGGATATAT+TGG | 0.379495 | 4.4:-19543486 | MS.gene35135:intron |
| GACTACCTCTGCTGGTATCA+TGG | 0.414748 | 4.4:-19542019 | MS.gene35135:CDS |
| ATTAGTCCTCGTTTCGATGT+TGG | 0.460967 | 4.4:-19543384 | MS.gene35135:CDS |
| AAAATTGTTGTGGAATTGAA+TGG | 0.479932 | 4.4:-19543429 | MS.gene35135:CDS |
| TACGTTGATGATCACAGGTC+TGG | 0.486815 | 4.4:-19543453 | MS.gene35135:CDS |
| AATGTTGGTGGTAAAGTGTT+GGG | 0.506719 | 4.4:-19541973 | MS.gene35135:CDS |
| AGGAAGGCCTAATCATAACT+TGG | 0.515758 | 4.4:+19543636 | None:intergenic |
| AGATTGAAGGATGGACTGCT+AGG | 0.524175 | 4.4:-19543353 | MS.gene35135:CDS |
| GGAAGCGCCAAGTTATGATT+AGG | 0.530843 | 4.4:-19543643 | MS.gene35135:CDS |
| ATTGTCTTGACTACCTCTGC+TGG | 0.534592 | 4.4:-19542027 | MS.gene35135:CDS |
| GAATGTTGGTGGTAAAGTGT+TGG | 0.537027 | 4.4:-19541974 | MS.gene35135:CDS |
| TCGAATACGTTGATGATCAC+AGG | 0.543527 | 4.4:-19543458 | MS.gene35135:CDS |
| GCTAGGAGAAAGAATGTTGG+TGG | 0.567141 | 4.4:-19541985 | MS.gene35135:CDS |
| TTGTAACAGCAAATATGGTG+AGG | 0.575157 | 4.4:-19543718 | None:intergenic |
| TAGGCTTCTTCCCTCAAGAC+AGG | 0.576488 | 4.4:-19543334 | MS.gene35135:intron |
| TGTAACAGCAAATATGGTGA+GGG | 0.583163 | 4.4:-19543717 | None:intergenic |
| GAGGCTAGGAGAAAGAATGT+TGG | 0.584494 | 4.4:-19541988 | MS.gene35135:CDS |
| TCATGGATCATGAAGAGGCT+AGG | 0.585008 | 4.4:-19542002 | MS.gene35135:CDS |
| ATGTACAATGCTGAGAAACG+TGG | 0.619087 | 4.4:-19543665 | MS.gene35135:CDS |
| GTTGGTGTCAAAGAGATTGA+AGG | 0.620427 | 4.4:-19543366 | MS.gene35135:CDS |
| CTTATCGTCATGCAAAAGCA+TGG | 0.625917 | 4.4:-19543593 | MS.gene35135:intron |
| CAGGTCTGGCAAAATTGTTG+TGG | 0.629911 | 4.4:-19543439 | MS.gene35135:CDS |
| AATGGAAGATTGAATAAGTG+TGG | 0.630140 | 4.4:-19543411 | MS.gene35135:CDS |
| TGGTATCATGGATCATGAAG+AGG | 0.639197 | 4.4:-19542007 | MS.gene35135:CDS |
| ATGATCCATGATACCAGCAG+AGG | 0.644078 | 4.4:+19542014 | None:intergenic |
| GTGTCAAAGAGATTGAAGGA+TGG | 0.661917 | 4.4:-19543362 | MS.gene35135:CDS |
| TGTACAATGCTGAGAAACGT+GGG | 0.665211 | 4.4:-19543664 | MS.gene35135:CDS |
| TTGACACCAACATCGAAACG+AGG | 0.688564 | 4.4:+19543378 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAACTAATAGTTAA+AGG | - | chr4.4:19543421-19543440 | MS.gene35135:CDS | 15.0% |
| !! | AAATTATAAAAACAGCTTAT+AGG | - | chr4.4:19542565-19542584 | MS.gene35135:intron | 15.0% |
| !! | AAGAAAAACTAATAGTTAAA+GGG | - | chr4.4:19543422-19543441 | MS.gene35135:CDS | 15.0% |
| !! | AAGCATAATAAGAAAATATA+CGG | + | chr4.4:19543121-19543140 | None:intergenic | 15.0% |
| !! | ATAAAACACAAACTTAATTA+GGG | + | chr4.4:19542718-19542737 | None:intergenic | 15.0% |
| !! | TATAAAACACAAACTTAATT+AGG | + | chr4.4:19542719-19542738 | None:intergenic | 15.0% |
| !!! | ATTTTCTTATTATGCTTTTA+TGG | - | chr4.4:19543124-19543143 | MS.gene35135:intron | 15.0% |
| !!! | CTAATTATGCTTTTATTTAT+TGG | - | chr4.4:19543200-19543219 | MS.gene35135:intron | 15.0% |
| !!! | TTTTCTTATTATGCTTTTAT+GGG | - | chr4.4:19543125-19543144 | MS.gene35135:intron | 15.0% |
| !! | AAAATATTAAAAGATGGGAT+GGG | + | chr4.4:19543286-19543305 | None:intergenic | 20.0% |
| !! | AATTGAATAATTGTTGCAAA+AGG | + | chr4.4:19543334-19543353 | None:intergenic | 20.0% |
| !! | ACAAAGTATATAAAGATTGT+CGG | + | chr4.4:19543459-19543478 | None:intergenic | 20.0% |
| !! | AGAAAAACTAATAGTTAAAG+GGG | - | chr4.4:19543423-19543442 | MS.gene35135:CDS | 20.0% |
| !! | CAAAAGCAAATAAATTAGAA+AGG | + | chr4.4:19542872-19542891 | None:intergenic | 20.0% |
| !! | TAAAATATTAAAAGATGGGA+TGG | + | chr4.4:19543287-19543306 | None:intergenic | 20.0% |
| !! | TAAATTCAAACCGTTATTAA+TGG | - | chr4.4:19543091-19543110 | MS.gene35135:intron | 20.0% |
| !!! | CTTTCTAATTTATTTGCTTT+TGG | - | chr4.4:19542870-19542889 | MS.gene35135:intron | 20.0% |
| !!! | TCATGAATCATTTTTAATGA+TGG | - | chr4.4:19543062-19543081 | MS.gene35135:intron | 20.0% |
| !!! | TTTCTTATTATGCTTTTATG+GGG | - | chr4.4:19543126-19543145 | MS.gene35135:intron | 20.0% |
| ! | AAAATTGTTGTGGAATTGAA+TGG | - | chr4.4:19542235-19542254 | MS.gene35135:intron | 25.0% |
| ! | AGAAAACTAACTTATGTCAA+TGG | + | chr4.4:19542461-19542480 | None:intergenic | 25.0% |
| ! | GTATAGTAAATAGATAGAGT+GGG | + | chr4.4:19543176-19543195 | None:intergenic | 25.0% |
| ! | TATACTTTGTAGTAAATCGA+TGG | - | chr4.4:19543469-19543488 | MS.gene35135:CDS | 25.0% |
| ! | TCAAACTAGTATCATGTTTA+TGG | + | chr4.4:19542369-19542388 | None:intergenic | 25.0% |
| ! | TGATATATTGTATACTCTTG+TGG | - | chr4.4:19542162-19542181 | MS.gene35135:intron | 25.0% |
| ! | TTGACTTATGCTTCATATAT+TGG | - | chr4.4:19542989-19543008 | MS.gene35135:intron | 25.0% |
| !! | AAATAAAAGCATAATTAGCG+AGG | + | chr4.4:19543198-19543217 | None:intergenic | 25.0% |
| !! | GAACTTATGAAATTAGCTTA+TGG | - | chr4.4:19542494-19542513 | MS.gene35135:intron | 25.0% |
| !! | GTATCATATGATTTTTCTTG+TGG | - | chr4.4:19543574-19543593 | MS.gene35135:intron | 25.0% |
| !!! | ATTGACATAAGTTAGTTTTC+TGG | - | chr4.4:19542460-19542479 | MS.gene35135:intron | 25.0% |
| !!! | GAATTTGATAATCACTTTTG+AGG | + | chr4.4:19542051-19542070 | None:intergenic | 25.0% |
| !!! | TTGACATAAGTTAGTTTTCT+GGG | - | chr4.4:19542461-19542480 | MS.gene35135:intron | 25.0% |
| AAAATAAGCCGATAAAAGCT+TGG | + | chr4.4:19542528-19542547 | None:intergenic | 30.0% | |
| AAACTTAATTAGGGTCTGTT+TGG | + | chr4.4:19542709-19542728 | None:intergenic | 30.0% | |
| AAATAAGCCGATAAAAGCTT+GGG | + | chr4.4:19542527-19542546 | None:intergenic | 30.0% | |
| AATGGAAGATTGAATAAGTG+TGG | - | chr4.4:19542253-19542272 | MS.gene35135:intron | 30.0% | |
| ACAAGCAACATAACATTCAA+CGG | + | chr4.4:19543552-19543571 | None:intergenic | 30.0% | |
| ATTTGAGCAACCAATAGTTA+GGG | + | chr4.4:19543601-19543620 | None:intergenic | 30.0% | |
| CTTGTGGTTATAGGATATAT+TGG | - | chr4.4:19542178-19542197 | MS.gene35135:intron | 30.0% | |
| GGTATAGTAAATAGATAGAG+TGG | + | chr4.4:19543177-19543196 | None:intergenic | 30.0% | |
| TATAGTTCCTAACTTTCTTG+TGG | - | chr4.4:19542735-19542754 | MS.gene35135:intron | 30.0% | |
| TGTTTGATCTCAACATAACA+AGG | + | chr4.4:19542839-19542858 | None:intergenic | 30.0% | |
| TTCAAACCGTTATTAATGGT+TGG | - | chr4.4:19543095-19543114 | MS.gene35135:intron | 30.0% | |
| TTGTATACTCTTGTGGTTAT+AGG | - | chr4.4:19542169-19542188 | MS.gene35135:intron | 30.0% | |
| ! | CAATATTCCCAAGCTTTTAT+CGG | - | chr4.4:19542517-19542536 | MS.gene35135:intron | 30.0% |
| ! | TTATTATGCTTTTATGGGGT+GGG | - | chr4.4:19543130-19543149 | MS.gene35135:intron | 30.0% |
| !! | ATGTAGTTGACTCTATTTTG+TGG | - | chr4.4:19542112-19542131 | MS.gene35135:intron | 30.0% |
| !! | TGTAGTTGACTCTATTTTGT+GGG | - | chr4.4:19542113-19542132 | MS.gene35135:intron | 30.0% |
| !! | TTGATAATCACTTTTGAGGA+AGG | + | chr4.4:19542047-19542066 | None:intergenic | 30.0% |
| !!! | ATTTATTTGCTTTTGGTTCC+TGG | - | chr4.4:19542877-19542896 | MS.gene35135:intron | 30.0% |
| !!! | CTAGTAGGCTTTTAAAACTT+GGG | - | chr4.4:19542920-19542939 | MS.gene35135:intron | 30.0% |
| !!! | TCTAGTAGGCTTTTAAAACT+TGG | - | chr4.4:19542919-19542938 | MS.gene35135:intron | 30.0% |
| AAATCACTGTGACTCACTTA+CGG | - | chr4.4:19543012-19543031 | MS.gene35135:intron | 35.0% | |
| ACAGAAACCTGTTCTATATG+GGG | - | chr4.4:19543380-19543399 | MS.gene35135:CDS | 35.0% | |
| AGAATGACCACAAGAAAGTT+AGG | + | chr4.4:19542745-19542764 | None:intergenic | 35.0% | |
| AGACAGAAACCTGTTCTATA+TGG | - | chr4.4:19543378-19543397 | MS.gene35135:CDS | 35.0% | |
| ATACGGCCAACCATTAATAA+CGG | + | chr4.4:19543104-19543123 | None:intergenic | 35.0% | |
| CCTACTAGACCTAACATAAA+GGG | + | chr4.4:19542908-19542927 | None:intergenic | 35.0% | |
| CTACTAGACCTAACATAAAG+GGG | + | chr4.4:19542907-19542926 | None:intergenic | 35.0% | |
| CTGAAGTTGCTATCATCATA+TGG | - | chr4.4:19543522-19543541 | MS.gene35135:intron | 35.0% | |
| GACAGAAACCTGTTCTATAT+GGG | - | chr4.4:19543379-19543398 | MS.gene35135:CDS | 35.0% | |
| GATTTGAGCAACCAATAGTT+AGG | + | chr4.4:19543602-19543621 | None:intergenic | 35.0% | |
| TAGTAAATAGATAGAGTGGG+AGG | + | chr4.4:19543173-19543192 | None:intergenic | 35.0% | |
| TTAATTAGGGTCTGTTTGGA+TGG | + | chr4.4:19542705-19542724 | None:intergenic | 35.0% | |
| TTGCTCAAATCATGCAGTTT+GGG | - | chr4.4:19543611-19543630 | MS.gene35135:CDS | 35.0% | |
| TTTGTGTACCACATTGACAT+TGG | - | chr4.4:19542765-19542784 | MS.gene35135:intron | 35.0% | |
| ! | CTTATTATGCTTTTATGGGG+TGG | - | chr4.4:19543129-19543148 | MS.gene35135:intron | 35.0% |
| !! | AATGTTGGTGGTAAAGTGTT+GGG | - | chr4.4:19543691-19543710 | MS.gene35135:CDS | 35.0% |
| !!! | TAGGCTTTTAAAACTTGGGT+TGG | - | chr4.4:19542924-19542943 | MS.gene35135:intron | 35.0% |
| AATCACTGTGACTCACTTAC+GGG | - | chr4.4:19543013-19543032 | MS.gene35135:intron | 40.0% | |
| AGGAAGGCCTAATCATAACT+TGG | + | chr4.4:19542031-19542050 | None:intergenic | 40.0% | |
| ATGTACAATGCTGAGAAACG+TGG | - | chr4.4:19541999-19542018 | MS.gene35135:CDS | 40.0% | |
| ATTAGTCCTCGTTTCGATGT+TGG | - | chr4.4:19542280-19542299 | MS.gene35135:intron | 40.0% | |
| CCCTTTATGTTAGGTCTAGT+AGG | - | chr4.4:19542905-19542924 | MS.gene35135:intron | 40.0% | |
| CTAACATAAAGGGGAATTCC+AGG | + | chr4.4:19542898-19542917 | None:intergenic | 40.0% | |
| CTGGAATTCCCCTTTATGTT+AGG | - | chr4.4:19542896-19542915 | MS.gene35135:intron | 40.0% | |
| CTGTATTCCCCATATAGAAC+AGG | + | chr4.4:19543390-19543409 | None:intergenic | 40.0% | |
| CTTATCGTCATGCAAAAGCA+TGG | - | chr4.4:19542071-19542090 | MS.gene35135:intron | 40.0% | |
| GCCTACTAGACCTAACATAA+AGG | + | chr4.4:19542909-19542928 | None:intergenic | 40.0% | |
| GGTGGGAGTAGAATATTCAT+TGG | - | chr4.4:19543147-19543166 | MS.gene35135:intron | 40.0% | |
| GTGTCAAAGAGATTGAAGGA+TGG | - | chr4.4:19542302-19542321 | MS.gene35135:intron | 40.0% | |
| GTTGCTCAAATCATGCAGTT+TGG | - | chr4.4:19543610-19543629 | MS.gene35135:CDS | 40.0% | |
| TAAGTCAAGACAAACACTGC+CGG | + | chr4.4:19542977-19542996 | None:intergenic | 40.0% | |
| TCAAGACTCCAATGTCAATG+TGG | + | chr4.4:19542776-19542795 | None:intergenic | 40.0% | |
| TGGTATCATGGATCATGAAG+AGG | - | chr4.4:19543657-19543676 | MS.gene35135:CDS | 40.0% | |
| TGTACAATGCTGAGAAACGT+GGG | - | chr4.4:19542000-19542019 | MS.gene35135:CDS | 40.0% | |
| TTCTTGTGGTCCCTAACTAT+TGG | - | chr4.4:19543588-19543607 | MS.gene35135:intron | 40.0% | |
| ! | CATGCTTTTGCATGACGATA+AGG | + | chr4.4:19542073-19542092 | None:intergenic | 40.0% |
| ! | TCATGCAAAAGCATGGTATG+TGG | - | chr4.4:19542078-19542097 | MS.gene35135:intron | 40.0% |
| !! | AACTTGGGTTGGAATTGTAG+AGG | - | chr4.4:19542935-19542954 | MS.gene35135:intron | 40.0% |
| !! | ACTTGGGTTGGAATTGTAGA+GGG | - | chr4.4:19542936-19542955 | MS.gene35135:intron | 40.0% |
| !! | GAATGTTGGTGGTAAAGTGT+TGG | - | chr4.4:19543690-19543709 | MS.gene35135:CDS | 40.0% |
| !! | GTTGGTGTCAAAGAGATTGA+AGG | - | chr4.4:19542298-19542317 | MS.gene35135:intron | 40.0% |
| !! | TCGAATACGTTGATGATCAC+AGG | - | chr4.4:19542206-19542225 | MS.gene35135:intron | 40.0% |
| !! | TTTTAGCTGACCTGTCTTGA+GGG | + | chr4.4:19542343-19542362 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTGACCTGTCTTG+AGG | + | chr4.4:19542344-19542363 | None:intergenic | 40.0% |
| AGGGGTTAACCAGAACAATC+CGG | - | chr4.4:19542955-19542974 | MS.gene35135:intron | 45.0% | |
| ATGATCCATGATACCAGCAG+AGG | + | chr4.4:19543653-19543672 | None:intergenic | 45.0% | |
| ATTGTCTTGACTACCTCTGC+TGG | - | chr4.4:19543637-19543656 | MS.gene35135:CDS | 45.0% | |
| CAGGTCTGGCAAAATTGTTG+TGG | - | chr4.4:19542225-19542244 | MS.gene35135:intron | 45.0% | |
| GACTCACTTACGGGACTATT+TGG | - | chr4.4:19543022-19543041 | MS.gene35135:intron | 45.0% | |
| GAGGCTAGGAGAAAGAATGT+TGG | - | chr4.4:19543676-19543695 | MS.gene35135:CDS | 45.0% | |
| GCTAGGAGAAAGAATGTTGG+TGG | - | chr4.4:19543679-19543698 | MS.gene35135:CDS | 45.0% | |
| TCATGGATCATGAAGAGGCT+AGG | - | chr4.4:19543662-19543681 | MS.gene35135:CDS | 45.0% | |
| TTGACACCAACATCGAAACG+AGG | + | chr4.4:19542289-19542308 | None:intergenic | 45.0% | |
| ! | GCAAAAGCATGGTATGTGGT+TGG | - | chr4.4:19542082-19542101 | MS.gene35135:intron | 45.0% |
| !! | AGATTGAAGGATGGACTGCT+AGG | - | chr4.4:19542311-19542330 | MS.gene35135:intron | 45.0% |
| !! | CTTGGGTTGGAATTGTAGAG+GGG | - | chr4.4:19542937-19542956 | MS.gene35135:intron | 45.0% |
| !! | GGAAGCGCCAAGTTATGATT+AGG | - | chr4.4:19542021-19542040 | MS.gene35135:CDS | 45.0% |
| !! | TACGTTGATGATCACAGGTC+TGG | - | chr4.4:19542211-19542230 | MS.gene35135:intron | 45.0% |
| !! | AAATTAAAATATTAAAAGAT+GGG | + | chr4.4:19543291-19543310 | None:intergenic | 5.0% |
| !! | TAAATTAAAATATTAAAAGA+TGG | + | chr4.4:19543292-19543311 | None:intergenic | 5.0% |
| CAAACACTGCCGGATTGTTC+TGG | + | chr4.4:19542967-19542986 | None:intergenic | 50.0% | |
| GACTACCTCTGCTGGTATCA+TGG | - | chr4.4:19543645-19543664 | MS.gene35135:CDS | 50.0% | |
| TAGGCTTCTTCCCTCAAGAC+AGG | - | chr4.4:19542330-19542349 | MS.gene35135:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19541960 | 19543726 | 19541960 | ID=MS.gene35135 |
| chr4.4 | mRNA | 19541960 | 19543726 | 19541960 | ID=MS.gene35135.t1;Parent=MS.gene35135 |
| chr4.4 | exon | 19543594 | 19543726 | 19543594 | ID=MS.gene35135.t1.exon1;Parent=MS.gene35135.t1 |
| chr4.4 | CDS | 19543594 | 19543726 | 19543594 | ID=cds.MS.gene35135.t1;Parent=MS.gene35135.t1 |
| chr4.4 | exon | 19543335 | 19543495 | 19543335 | ID=MS.gene35135.t1.exon2;Parent=MS.gene35135.t1 |
| chr4.4 | CDS | 19543335 | 19543495 | 19543335 | ID=cds.MS.gene35135.t1;Parent=MS.gene35135.t1 |
| chr4.4 | exon | 19541960 | 19542058 | 19541960 | ID=MS.gene35135.t1.exon3;Parent=MS.gene35135.t1 |
| chr4.4 | CDS | 19541960 | 19542058 | 19541960 | ID=cds.MS.gene35135.t1;Parent=MS.gene35135.t1 |
| Gene Sequence |
| Protein sequence |
