AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028330.t1 MTR_4g094572 98.408 377 6 0 1 377 1 377 0.0 765
MS.gene028330.t1 MTR_5g077710 43.144 299 148 7 91 375 94 384 1.07e-78 247
MS.gene028330.t1 MTR_2g028590 40.604 298 156 7 91 375 174 463 3.29e-76 243
MS.gene028330.t1 MTR_2g028610 42.088 297 151 8 92 375 170 458 7.40e-76 242
MS.gene028330.t1 MTR_1g024005 32.692 416 226 8 4 375 19 424 1.03e-73 235
MS.gene028330.t1 MTR_3g113270 32.117 411 230 10 4 375 19 419 1.31e-70 227
MS.gene028330.t1 MTR_0010s0400 41.096 292 151 7 92 374 177 456 4.65e-62 206
MS.gene028330.t1 MTR_8g028460 38.158 304 161 8 89 374 191 485 5.55e-59 199
MS.gene028330.t1 MTR_3g071050 37.647 170 89 5 89 248 103 265 3.24e-29 114
MS.gene028330.t1 MTR_3g070620 39.130 138 72 4 178 313 62 189 9.13e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028330.t1 AT1G29790 67.008 391 92 8 7 377 5 378 0.0 516
MS.gene028330.t1 AT1G29790 67.008 391 92 8 7 377 5 378 0.0 516
MS.gene028330.t1 AT5G40830 34.230 409 215 11 4 374 19 411 3.78e-73 234
MS.gene028330.t1 AT5G40830 34.230 409 215 11 4 374 19 411 3.78e-73 234
MS.gene028330.t1 AT3G27230 33.580 405 221 9 4 375 19 408 3.51e-70 226
MS.gene028330.t1 AT5G40830 33.251 403 187 10 4 374 19 371 1.53e-67 218
MS.gene028330.t1 AT3G05390 40.753 292 152 7 92 374 180 459 7.27e-66 216
MS.gene028330.t1 AT4G01240 36.964 303 165 7 89 374 361 654 2.09e-57 198

Find 105 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGATTCCTCTGTTATC+TGG 0.165102 4.2:+17770571 MS.gene028330:CDS
TAAGCCTTTGATTGCGAAAA+TGG 0.167124 4.2:+17771094 MS.gene028330:CDS
GGGATTGGTGGAAGTGGTTT+TGG 0.169419 4.2:-17770204 None:intergenic
TGGTGTTAGGGTTGGTGTTT+TGG 0.217335 4.2:-17770287 None:intergenic
CTTGATGTTGGTGGTGGTAC+TGG 0.282533 4.2:+17770765 MS.gene028330:CDS
GAGGCGCGTGAGGTGGTTAA+TGG 0.310317 4.2:-17770265 None:intergenic
CTCGATTTGTCCTTCTGATT+CGG 0.339448 4.2:+17770425 MS.gene028330:CDS
TGGTTGCTACCATTGCTATT+AGG 0.349162 4.2:-17770131 None:intergenic
CAGTGAGGCGGTTGCGTTAA+GGG 0.357505 4.2:+17770860 MS.gene028330:CDS
GATCGCGAAATCAGCGAAAT+CGG 0.372554 4.2:+17770728 MS.gene028330:CDS
ATCTGAAGAAGCTGTTGAAC+TGG 0.377068 4.2:-17770708 None:intergenic
ACCTGATTCCTCTGTTATCT+GGG 0.386515 4.2:+17770572 MS.gene028330:CDS
GGCGGTGAATCGATGGATTC+CGG 0.389269 4.2:+17770962 MS.gene028330:CDS
TTGGACGGAGTTTGTTTCTT+CGG 0.393300 4.2:-17770516 None:intergenic
AGTTGACGGAGGAGCTCGTC+GGG 0.409555 4.2:-17770225 None:intergenic
AAGAAAGTGAAGTGGGCAAC+GGG 0.410418 4.2:+17771122 MS.gene028330:CDS
TGAGAGGTGGAGGGTATTTG+TGG 0.411452 4.2:+17771027 MS.gene028330:CDS
GAGTTGTGGAGAGGTGGTAG+AGG 0.411999 4.2:-17770164 None:intergenic
GAGTAGATCTGAAGGGATTG+AGG 0.412355 4.2:-17770319 None:intergenic
GAAGGTTCAAATCCGAGATC+AGG 0.415306 4.2:-17770639 None:intergenic
CGGAGGAGCTCGTCGGGGAT+TGG 0.416542 4.2:-17770219 None:intergenic
ACAGTGAGGCGGTTGCGTTA+AGG 0.420442 4.2:+17770859 MS.gene028330:CDS
ATGTACTTGTGAAGAAGATC+AGG 0.423383 4.2:-17770387 None:intergenic
CAGCGGTTACCGATGTTTGA+TGG 0.424081 4.2:+17770912 MS.gene028330:CDS
TTACGGCTGGGGCTTGATGT+TGG 0.437399 4.2:+17770753 MS.gene028330:CDS
AAACAACGCCGGCGAGGGAG+AGG 0.443660 4.2:-17770483 None:intergenic
GAGTAGAGGAGTAGATCTGA+AGG 0.444596 4.2:-17770327 None:intergenic
CCATTGCTATTAGGAGAAGA+AGG 0.457866 4.2:-17770122 None:intergenic
CGGCTGGGGCTTGATGTTGG+TGG 0.458823 4.2:+17770756 MS.gene028330:CDS
GTGGTAGAGGGAGAGAATGT+TGG 0.460675 4.2:-17770151 None:intergenic
TCAGGTAAGGAAGAAGGAAA+AGG 0.465159 4.2:-17770555 None:intergenic
AAGCCTTTGATTGCGAAAAT+GGG 0.467826 4.2:+17771095 MS.gene028330:CDS
AACGCAACCGCCTCACTGTA+AGG 0.473749 4.2:-17770855 None:intergenic
ATCGGTAACCGCTGCTGCAA+CGG 0.476365 4.2:-17770903 None:intergenic
TGGTGGTACTGGCTCATTTG+CGG 0.479932 4.2:+17770776 MS.gene028330:CDS
CAGGTAAGGAAGAAGGAAAA+GGG 0.483236 4.2:-17770554 None:intergenic
GTGGGAGGGCGGTGAATCGA+TGG 0.484047 4.2:+17770955 MS.gene028330:CDS
AACCGTCAAAACCCTGATCT+CGG 0.488287 4.2:+17770627 MS.gene028330:CDS
GCTGAAAGCTTAATTCTTCG+CGG 0.489356 4.2:+17770453 MS.gene028330:CDS
TCCCAGATAACAGAGGAATC+AGG 0.491176 4.2:-17770573 None:intergenic
AGGAGCTCGTCGGGGATTGG+TGG 0.495160 4.2:-17770216 None:intergenic
TTTAGGGGATTGGAGAGTTG+TGG 0.496838 4.2:-17770178 None:intergenic
ATTGGAGAGTTGTGGAGAGG+TGG 0.498315 4.2:-17770170 None:intergenic
GAGGAATCAGGTAAGGAAGA+AGG 0.511266 4.2:-17770561 None:intergenic
GATAGAGTGTTGAGAGGTGG+AGG 0.517077 4.2:+17771017 MS.gene028330:CDS
CTGGGGCTTGATGTTGGTGG+TGG 0.522249 4.2:+17770759 MS.gene028330:CDS
ATGGTGTCGTGGATATTGTT+CGG 0.522500 4.2:+17770931 MS.gene028330:CDS
ATGGATTCCGGTGACGATGT+TGG 0.523220 4.2:+17770974 MS.gene028330:CDS
TCGTCGGGGATTGGTGGAAG+TGG 0.524129 4.2:-17770210 None:intergenic
TTGGTGAGAGGTGTGAGTAG+AGG 0.528167 4.2:-17770341 None:intergenic
ACGGGGAATAAGACTGATGC+TGG 0.528181 4.2:+17771140 MS.gene028330:CDS
TCGTGGATATTGTTCGGTGT+GGG 0.528274 4.2:+17770937 MS.gene028330:CDS
AGGTGGAGGGTATTTGTGGT+TGG 0.528302 4.2:+17771031 MS.gene028330:CDS
CGCGTATAGTGTGAAGTTGA+CGG 0.530863 4.2:-17770239 None:intergenic
AGTAGAGGAGTAGATCTGAA+GGG 0.535223 4.2:-17770326 None:intergenic
TGCTGCAACGGAACATGAAG+CGG 0.536548 4.2:-17770891 None:intergenic
GGATATTGTTCGGTGTGGGA+GGG 0.536790 4.2:+17770941 MS.gene028330:CDS
TTATGACAAGAAGAAGCAAT+TGG 0.537441 4.2:-17770360 None:intergenic
AGTTGTGGAGAGGTGGTAGA+GGG 0.537841 4.2:-17770163 None:intergenic
TTGCGGCGGCGATGAAAGTA+CGG 0.539661 4.2:+17770793 MS.gene028330:CDS
GATAACAGAGGAATCAGGTA+AGG 0.541159 4.2:-17770568 None:intergenic
TGGATATTGTTCGGTGTGGG+AGG 0.543086 4.2:+17770940 MS.gene028330:CDS
GAGAAGAAGGTTTAGTGTCA+TGG 0.552063 4.2:-17770109 None:intergenic
GAGAGAAACAACGCCGGCGA+GGG 0.553700 4.2:-17770488 None:intergenic
AAGGTTCAAATCCGAGATCA+GGG 0.554632 4.2:-17770638 None:intergenic
TATTGTTCGGTGTGGGAGGG+CGG 0.561682 4.2:+17770944 MS.gene028330:CDS
AGTGAGGCGGTTGCGTTAAG+GGG 0.563157 4.2:+17770861 MS.gene028330:CDS
TCTGAAGAAGCTGTTGAACT+GGG 0.564387 4.2:-17770707 None:intergenic
TTCATGTTCCGTTGCAGCAG+CGG 0.564533 4.2:+17770895 MS.gene028330:CDS
GGGTTACAAGAAAGTGAAGT+GGG 0.565136 4.2:+17771115 MS.gene028330:CDS
GGAGTTTGTTTCTTCGGCGT+CGG 0.566366 4.2:-17770510 None:intergenic
CAAGAAAGTGAAGTGGGCAA+CGG 0.572632 4.2:+17771121 MS.gene028330:CDS
GTTGTCATCCTCTCCCTCGC+CGG 0.574392 4.2:+17770475 MS.gene028330:CDS
AACTTAGAAACTTCACGAGA+AGG 0.584495 4.2:-17770657 None:intergenic
GATGTTGATAGAGTGTTGAG+AGG 0.584870 4.2:+17771011 MS.gene028330:CDS
CCTTCTTCTCCTAATAGCAA+TGG 0.585257 4.2:+17770122 MS.gene028330:CDS
GTCGTGGATATTGTTCGGTG+TGG 0.593818 4.2:+17770936 MS.gene028330:CDS
GGGATTGGAGAGTTGTGGAG+AGG 0.598949 4.2:-17770173 None:intergenic
AAGTTGACGGAGGAGCTCGT+CGG 0.599776 4.2:-17770226 None:intergenic
GATGAAAGTACGGAATGTTA+CGG 0.601069 4.2:+17770803 MS.gene028330:CDS
GCGCGTGAGGTGGTTAATGG+TGG 0.606953 4.2:-17770262 None:intergenic
TCAGCGAGCTCCGAATCAGA+AGG 0.610853 4.2:-17770435 None:intergenic
ACCGATGTTTGATGGTGTCG+TGG 0.615004 4.2:+17770920 MS.gene028330:CDS
GATGCTGGTGGTGTTAAGCA+TGG 0.624372 4.2:+17771155 MS.gene028330:CDS
GGAGAGAAACAACGCCGGCG+AGG 0.631888 4.2:-17770489 None:intergenic
GTTGATAGAGTGTTGAGAGG+TGG 0.635445 4.2:+17771014 MS.gene028330:CDS
AAGAAGAAGCAATTGGTGAG+AGG 0.636322 4.2:-17770353 None:intergenic
TGTGACTCTCATCTTGAGAG+AGG 0.637895 4.2:-17771209 None:intergenic
ATAGAGTGTTGAGAGGTGGA+GGG 0.639182 4.2:+17771018 MS.gene028330:CDS
ACAAATCGAGAACGGTGTGT+AGG 0.640075 4.2:-17770412 None:intergenic
TGGGTTACAAGAAAGTGAAG+TGG 0.640685 4.2:+17771114 MS.gene028330:CDS
TCAGAAGGACAAATCGAGAA+CGG 0.666336 4.2:-17770420 None:intergenic
TCCACGACACCATCAAACAT+CGG 0.670096 4.2:-17770921 None:intergenic
TGGTACTGGCTCATTTGCGG+CGG 0.680808 4.2:+17770779 MS.gene028330:CDS
TGTACTTGTGAAGAAGATCA+GGG 0.686850 4.2:-17770386 None:intergenic
TGTAGCGCCTTACAGTGAGG+CGG 0.694193 4.2:+17770848 MS.gene028330:CDS
TGTTGTAGCGCCTTACAGTG+AGG 0.710000 4.2:+17770845 MS.gene028330:CDS
GTATAGTGTGAAGTTGACGG+AGG 0.715536 4.2:-17770236 None:intergenic
GAAAGTACGGAATGTTACGG+TGG 0.724848 4.2:+17770806 MS.gene028330:CDS
GCGTCGGAGAGAAACAACGC+CGG 0.732120 4.2:-17770494 None:intergenic
ATAACGATCCCAGATAACAG+AGG 0.735131 4.2:-17770580 None:intergenic
GTTGACGGAGGAGCTCGTCG+GGG 0.737650 4.2:-17770224 None:intergenic
AGAAAGTGAAGTGGGCAACG+GGG 0.746580 4.2:+17771123 MS.gene028330:CDS
GGGAATAAGACTGATGCTGG+TGG 0.762122 4.2:+17771143 MS.gene028330:CDS
ACTTGTGAAGAAGATCAGGG+TGG 0.798354 4.2:-17770383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGGACCATTTTTTTAGTAA+GGG + chr4.2:17771050-17771069 MS.gene028330:CDS 25.0%
TTATGACAAGAAGAAGCAAT+TGG - chr4.2:17770363-17770382 None:intergenic 30.0%
!!! GTTGGACCATTTTTTTAGTA+AGG + chr4.2:17771049-17771068 MS.gene028330:CDS 30.0%
AACTTAGAAACTTCACGAGA+AGG - chr4.2:17770660-17770679 None:intergenic 35.0%
AAGCCTTTGATTGCGAAAAT+GGG + chr4.2:17771095-17771114 MS.gene028330:CDS 35.0%
ATGTACTTGTGAAGAAGATC+AGG - chr4.2:17770390-17770409 None:intergenic 35.0%
CCACACCCTTACTAAAAAAA+TGG - chr4.2:17771058-17771077 None:intergenic 35.0%
TAAGCCTTTGATTGCGAAAA+TGG + chr4.2:17771094-17771113 MS.gene028330:CDS 35.0%
TGTACTTGTGAAGAAGATCA+GGG - chr4.2:17770389-17770408 None:intergenic 35.0%
! GAAGAAGGAAAAGGGTTTTT+CGG - chr4.2:17770549-17770568 None:intergenic 35.0%
! GATGAAAGTACGGAATGTTA+CGG + chr4.2:17770803-17770822 MS.gene028330:CDS 35.0%
! TAACCCATTTTCGCAATCAA+AGG - chr4.2:17771101-17771120 None:intergenic 35.0%
!! AATCAGCGAAATCGGTTTTA+CGG + chr4.2:17770736-17770755 MS.gene028330:CDS 35.0%
!!! AGGATTTTGTGTTGGTGTTA+GGG - chr4.2:17770302-17770321 None:intergenic 35.0%
!!! CCATTTTTTTAGTAAGGGTG+TGG + chr4.2:17771055-17771074 MS.gene028330:CDS 35.0%
AAAAACTCCAACATCGTCAC+CGG - chr4.2:17770984-17771003 None:intergenic 40.0%
AAGAAGAAGCAATTGGTGAG+AGG - chr4.2:17770356-17770375 None:intergenic 40.0%
AAGGTTCAAATCCGAGATCA+GGG - chr4.2:17770641-17770660 None:intergenic 40.0%
ACCTGATTCCTCTGTTATCT+GGG + chr4.2:17770572-17770591 MS.gene028330:CDS 40.0%
AGTAGAGGAGTAGATCTGAA+GGG - chr4.2:17770329-17770348 None:intergenic 40.0%
ATAACGATCCCAGATAACAG+AGG - chr4.2:17770583-17770602 None:intergenic 40.0%
ATCTGAAGAAGCTGTTGAAC+TGG - chr4.2:17770711-17770730 None:intergenic 40.0%
CAGGTAAGGAAGAAGGAAAA+GGG - chr4.2:17770557-17770576 None:intergenic 40.0%
CCTTCTTCTCCTAATAGCAA+TGG + chr4.2:17770122-17770141 MS.gene028330:CDS 40.0%
GAGAAGAAGGTTTAGTGTCA+TGG - chr4.2:17770112-17770131 None:intergenic 40.0%
GATAACAGAGGAATCAGGTA+AGG - chr4.2:17770571-17770590 None:intergenic 40.0%
GCTGAAAGCTTAATTCTTCG+CGG + chr4.2:17770453-17770472 MS.gene028330:CDS 40.0%
GGGTTACAAGAAAGTGAAGT+GGG + chr4.2:17771115-17771134 MS.gene028330:CDS 40.0%
TACCTGATTCCTCTGTTATC+TGG + chr4.2:17770571-17770590 MS.gene028330:CDS 40.0%
TCAGAAGGACAAATCGAGAA+CGG - chr4.2:17770423-17770442 None:intergenic 40.0%
TCAGGTAAGGAAGAAGGAAA+AGG - chr4.2:17770558-17770577 None:intergenic 40.0%
TCTGAAGAAGCTGTTGAACT+GGG - chr4.2:17770710-17770729 None:intergenic 40.0%
TGGGTTACAAGAAAGTGAAG+TGG + chr4.2:17771114-17771133 MS.gene028330:CDS 40.0%
! AGGGATTGAGGATTTTGTGT+TGG - chr4.2:17770310-17770329 None:intergenic 40.0%
! CCATTGCTATTAGGAGAAGA+AGG - chr4.2:17770125-17770144 None:intergenic 40.0%
! CTCGATTTGTCCTTCTGATT+CGG + chr4.2:17770425-17770444 MS.gene028330:CDS 40.0%
! TGGTTGCTACCATTGCTATT+AGG - chr4.2:17770134-17770153 None:intergenic 40.0%
! TTGGACGGAGTTTGTTTCTT+CGG - chr4.2:17770519-17770538 None:intergenic 40.0%
!! ATGGTGTCGTGGATATTGTT+CGG + chr4.2:17770931-17770950 MS.gene028330:CDS 40.0%
!! GAGGATTTTGTGTTGGTGTT+AGG - chr4.2:17770303-17770322 None:intergenic 40.0%
!! GATGTTGATAGAGTGTTGAG+AGG + chr4.2:17771011-17771030 MS.gene028330:CDS 40.0%
!! TTTTTCGGAAGCGAATTGGA+CGG - chr4.2:17770534-17770553 None:intergenic 40.0%
!!! AAGTGGTTTTGGGGATTTAG+GGG - chr4.2:17770196-17770215 None:intergenic 40.0%
!!! GAAGTGGTTTTGGGGATTTA+GGG - chr4.2:17770197-17770216 None:intergenic 40.0%
!!! TTTTGTGTTGGTGTTAGGGT+TGG - chr4.2:17770298-17770317 None:intergenic 40.0%
AACCGTCAAAACCCTGATCT+CGG + chr4.2:17770627-17770646 MS.gene028330:CDS 45.0%
AAGAAAGTGAAGTGGGCAAC+GGG + chr4.2:17771122-17771141 MS.gene028330:CDS 45.0%
ACAAATCGAGAACGGTGTGT+AGG - chr4.2:17770415-17770434 None:intergenic 45.0%
ACTTGTGAAGAAGATCAGGG+TGG - chr4.2:17770386-17770405 None:intergenic 45.0%
CAAGAAAGTGAAGTGGGCAA+CGG + chr4.2:17771121-17771140 MS.gene028330:CDS 45.0%
CGCGTATAGTGTGAAGTTGA+CGG - chr4.2:17770242-17770261 None:intergenic 45.0%
GAAGGTTCAAATCCGAGATC+AGG - chr4.2:17770642-17770661 None:intergenic 45.0%
GAGGAATCAGGTAAGGAAGA+AGG - chr4.2:17770564-17770583 None:intergenic 45.0%
GAGTAGAGGAGTAGATCTGA+AGG - chr4.2:17770330-17770349 None:intergenic 45.0%
GAGTAGATCTGAAGGGATTG+AGG - chr4.2:17770322-17770341 None:intergenic 45.0%
GATCGCGAAATCAGCGAAAT+CGG + chr4.2:17770728-17770747 MS.gene028330:CDS 45.0%
GTATAGTGTGAAGTTGACGG+AGG - chr4.2:17770239-17770258 None:intergenic 45.0%
TCCACGACACCATCAAACAT+CGG - chr4.2:17770924-17770943 None:intergenic 45.0%
TCCCAGATAACAGAGGAATC+AGG - chr4.2:17770576-17770595 None:intergenic 45.0%
TTTAGGGGATTGGAGAGTTG+TGG - chr4.2:17770181-17770200 None:intergenic 45.0%
! GAAAGTACGGAATGTTACGG+TGG + chr4.2:17770806-17770825 MS.gene028330:CDS 45.0%
!! AGGGTTTTTCGGAAGCGAAT+TGG - chr4.2:17770538-17770557 None:intergenic 45.0%
!! ATAGAGTGTTGAGAGGTGGA+GGG + chr4.2:17771018-17771037 MS.gene028330:CDS 45.0%
!! ATCCGAGATCAGGGTTTTGA+CGG - chr4.2:17770632-17770651 None:intergenic 45.0%
!! GATTGGTGGAAGTGGTTTTG+GGG - chr4.2:17770205-17770224 None:intergenic 45.0%
!! GGATTGGTGGAAGTGGTTTT+GGG - chr4.2:17770206-17770225 None:intergenic 45.0%
!! GTTGATAGAGTGTTGAGAGG+TGG + chr4.2:17771014-17771033 MS.gene028330:CDS 45.0%
!! TCGTGGATATTGTTCGGTGT+GGG + chr4.2:17770937-17770956 MS.gene028330:CDS 45.0%
!!! GGAAGTGGTTTTGGGGATTT+AGG - chr4.2:17770198-17770217 None:intergenic 45.0%
!!! GTTTTGGGGATTTAGGGGAT+TGG - chr4.2:17770191-17770210 None:intergenic 45.0%
!!! TGGTGTTAGGGTTGGTGTTT+TGG - chr4.2:17770290-17770309 None:intergenic 45.0%
!!! TGTTAGGGTTGGTGTTTTGG+AGG - chr4.2:17770287-17770306 None:intergenic 45.0%
ACGGGGAATAAGACTGATGC+TGG + chr4.2:17771140-17771159 MS.gene028330:CDS 50.0%
AGAAAGTGAAGTGGGCAACG+GGG + chr4.2:17771123-17771142 MS.gene028330:CDS 50.0%
AGTTGTGGAGAGGTGGTAGA+GGG - chr4.2:17770166-17770185 None:intergenic 50.0%
ATGGATTCCGGTGACGATGT+TGG + chr4.2:17770974-17770993 MS.gene028330:CDS 50.0%
ATTGGAGAGTTGTGGAGAGG+TGG - chr4.2:17770173-17770192 None:intergenic 50.0%
CAGCGGTTACCGATGTTTGA+TGG + chr4.2:17770912-17770931 MS.gene028330:CDS 50.0%
GGGAATAAGACTGATGCTGG+TGG + chr4.2:17771143-17771162 MS.gene028330:CDS 50.0%
GTGGTAGAGGGAGAGAATGT+TGG - chr4.2:17770154-17770173 None:intergenic 50.0%
TGCTGCAACGGAACATGAAG+CGG - chr4.2:17770894-17770913 None:intergenic 50.0%
TGTTGTAGCGCCTTACAGTG+AGG + chr4.2:17770845-17770864 MS.gene028330:CDS 50.0%
TTCATGTTCCGTTGCAGCAG+CGG + chr4.2:17770895-17770914 MS.gene028330:CDS 50.0%
! GATGCTGGTGGTGTTAAGCA+TGG + chr4.2:17771155-17771174 MS.gene028330:CDS 50.0%
! GGAGTTTGTTTCTTCGGCGT+CGG - chr4.2:17770513-17770532 None:intergenic 50.0%
! GTCGTGGATATTGTTCGGTG+TGG + chr4.2:17770936-17770955 MS.gene028330:CDS 50.0%
! TTGGTGAGAGGTGTGAGTAG+AGG - chr4.2:17770344-17770363 None:intergenic 50.0%
!! ACCGATGTTTGATGGTGTCG+TGG + chr4.2:17770920-17770939 MS.gene028330:CDS 50.0%
!! AGCGAAATCGGTTTTACGGC+TGG + chr4.2:17770740-17770759 MS.gene028330:CDS 50.0%
!! AGGTGGAGGGTATTTGTGGT+TGG + chr4.2:17771031-17771050 MS.gene028330:CDS 50.0%
!! CGAAATCGGTTTTACGGCTG+GGG + chr4.2:17770742-17770761 MS.gene028330:CDS 50.0%
!! CTTGATGTTGGTGGTGGTAC+TGG + chr4.2:17770765-17770784 MS.gene028330:CDS 50.0%
!! GATAGAGTGTTGAGAGGTGG+AGG + chr4.2:17771017-17771036 MS.gene028330:CDS 50.0%
!! GCGAAATCGGTTTTACGGCT+GGG + chr4.2:17770741-17770760 MS.gene028330:CDS 50.0%
!! GGATATTGTTCGGTGTGGGA+GGG + chr4.2:17770941-17770960 MS.gene028330:CDS 50.0%
!! GGGATTGGTGGAAGTGGTTT+TGG - chr4.2:17770207-17770226 None:intergenic 50.0%
!! TGAGAGGTGGAGGGTATTTG+TGG + chr4.2:17771027-17771046 MS.gene028330:CDS 50.0%
!! TGGATATTGTTCGGTGTGGG+AGG + chr4.2:17770940-17770959 MS.gene028330:CDS 50.0%
!! TGGTGGTACTGGCTCATTTG+CGG + chr4.2:17770776-17770795 MS.gene028330:CDS 50.0%
AACGCAACCGCCTCACTGTA+AGG - chr4.2:17770858-17770877 None:intergenic 55.0%
AAGTTGACGGAGGAGCTCGT+CGG - chr4.2:17770229-17770248 None:intergenic 55.0%
ACAGTGAGGCGGTTGCGTTA+AGG + chr4.2:17770859-17770878 MS.gene028330:CDS 55.0%
AGTGAGGCGGTTGCGTTAAG+GGG + chr4.2:17770861-17770880 MS.gene028330:CDS 55.0%
ATCGGTAACCGCTGCTGCAA+CGG - chr4.2:17770906-17770925 None:intergenic 55.0%
CAGTGAGGCGGTTGCGTTAA+GGG + chr4.2:17770860-17770879 MS.gene028330:CDS 55.0%
GAGTTGTGGAGAGGTGGTAG+AGG - chr4.2:17770167-17770186 None:intergenic 55.0%
GGGATTGGAGAGTTGTGGAG+AGG - chr4.2:17770176-17770195 None:intergenic 55.0%
TCAGCGAGCTCCGAATCAGA+AGG - chr4.2:17770438-17770457 None:intergenic 55.0%
TGTAGCGCCTTACAGTGAGG+CGG + chr4.2:17770848-17770867 MS.gene028330:CDS 55.0%
TTACGGCTGGGGCTTGATGT+TGG + chr4.2:17770753-17770772 MS.gene028330:CDS 55.0%
TTGCGGCGGCGATGAAAGTA+CGG + chr4.2:17770793-17770812 MS.gene028330:CDS 55.0%
! GGCGGTGAATCGATGGATTC+CGG + chr4.2:17770962-17770981 MS.gene028330:CDS 55.0%
!! TATTGTTCGGTGTGGGAGGG+CGG + chr4.2:17770944-17770963 MS.gene028330:CDS 55.0%
!! TGGTACTGGCTCATTTGCGG+CGG + chr4.2:17770779-17770798 MS.gene028330:CDS 55.0%
AGTTGACGGAGGAGCTCGTC+GGG - chr4.2:17770228-17770247 None:intergenic 60.0%
GAGAGAAACAACGCCGGCGA+GGG - chr4.2:17770491-17770510 None:intergenic 60.0%
GAGGCGCGTGAGGTGGTTAA+TGG - chr4.2:17770268-17770287 None:intergenic 60.0%
GCGCGTGAGGTGGTTAATGG+TGG - chr4.2:17770265-17770284 None:intergenic 60.0%
GCGTCGGAGAGAAACAACGC+CGG - chr4.2:17770497-17770516 None:intergenic 60.0%
GTTGTCATCCTCTCCCTCGC+CGG + chr4.2:17770475-17770494 MS.gene028330:CDS 60.0%
! CTGGGGCTTGATGTTGGTGG+TGG + chr4.2:17770759-17770778 MS.gene028330:CDS 60.0%
! TCGTCGGGGATTGGTGGAAG+TGG - chr4.2:17770213-17770232 None:intergenic 60.0%
!!! TGGTGTTTTGGAGGCGCGTG+AGG - chr4.2:17770278-17770297 None:intergenic 60.0%
!!! TGTTTTGGAGGCGCGTGAGG+TGG - chr4.2:17770275-17770294 None:intergenic 60.0%
AAACAACGCCGGCGAGGGAG+AGG - chr4.2:17770486-17770505 None:intergenic 65.0%
AGGAGCTCGTCGGGGATTGG+TGG - chr4.2:17770219-17770238 None:intergenic 65.0%
CGGCTGGGGCTTGATGTTGG+TGG + chr4.2:17770756-17770775 MS.gene028330:CDS 65.0%
GGAGAGAAACAACGCCGGCG+AGG - chr4.2:17770492-17770511 None:intergenic 65.0%
GTGGGAGGGCGGTGAATCGA+TGG + chr4.2:17770955-17770974 MS.gene028330:CDS 65.0%
GTTGACGGAGGAGCTCGTCG+GGG - chr4.2:17770227-17770246 None:intergenic 65.0%
CGGAGGAGCTCGTCGGGGAT+TGG - chr4.2:17770222-17770241 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 17770090 17771223 17770090 ID=MS.gene028330
chr4.2 mRNA 17770090 17771223 17770090 ID=MS.gene028330.t1;Parent=MS.gene028330
chr4.2 exon 17770090 17771223 17770090 ID=MS.gene028330.t1.exon1;Parent=MS.gene028330.t1
chr4.2 CDS 17770090 17771223 17770090 ID=cds.MS.gene028330.t1;Parent=MS.gene028330.t1
Gene Sequence

>MS.gene028330

ATGGGTTTCACATTCAGCACCATGACACTAAACCTTCTTCTCCTAATAGCAATGGTAGCAACCAACATTCTCTCCCTCTACCACCTCTCCACAACTCTCCAATCCCCTAAATCCCCAAAACCACTTCCACCAATCCCCGACGAGCTCCTCCGTCAACTTCACACTATACGCGCCACCATTAACCACCTCACGCGCCTCCAAAACACCAACCCTAACACCAACACAAAATCCTCAATCCCTTCAGATCTACTCCTCTACTCACACCTCTCACCAATTGCTTCTTCTTGTCATAACCACCCTGATCTTCTTCACAAGTACATGACCTACACACCGTTCTCGATTTGTCCTTCTGATTCGGAGCTCGCTGAAAGCTTAATTCTTCGCGGTTGTCATCCTCTCCCTCGCCGGCGTTGTTTCTCTCCGACGCCGAAGAAACAAACTCCGTCCAATTCGCTTCCGAAAAACCCTTTTCCTTCTTCCTTACCTGATTCCTCTGTTATCTGGGATCGTTATTCATGTAAATCATTCGATTGTTTTAACCGTCAAAACCCTGATCTCGGATTTGAACCTTCTCGTGAAGTTTCTAAGTTTACTAGCTACAATACTGACTTAGATCTCCCAGTTCAACAGCTTCTTCAGATCGCGAAATCAGCGAAATCGGTTTTACGGCTGGGGCTTGATGTTGGTGGTGGTACTGGCTCATTTGCGGCGGCGATGAAAGTACGGAATGTTACGGTGGTTACTACGACGATGAATGTTGTAGCGCCTTACAGTGAGGCGGTTGCGTTAAGGGGACTTGTGCCGCTTCATGTTCCGTTGCAGCAGCGGTTACCGATGTTTGATGGTGTCGTGGATATTGTTCGGTGTGGGAGGGCGGTGAATCGATGGATTCCGGTGACGATGTTGGAGTTTTTGTTGTTTGATGTTGATAGAGTGTTGAGAGGTGGAGGGTATTTGTGGTTGGACCATTTTTTTAGTAAGGGTGTGGATCTTGAGAAAGTGTATAAGCCTTTGATTGCGAAAATGGGTTACAAGAAAGTGAAGTGGGCAACGGGGAATAAGACTGATGCTGGTGGTGTTAAGCATGGAGAGCTTTACTTGACTGCATTGCTTCAAAAGCCTCTCTCAAGATGA
Protein sequence

>MS.gene028330.t1

MGFTFSTMTLNLLLLIAMVATNILSLYHLSTTLQSPKSPKPLPPIPDELLRQLHTIRATINHLTRLQNTNPNTNTKSSIPSDLLLYSHLSPIASSCHNHPDLLHKYMTYTPFSICPSDSELAESLILRGCHPLPRRRCFSPTPKKQTPSNSLPKNPFPSSLPDSSVIWDRYSCKSFDCFNRQNPDLGFEPSREVSKFTSYNTDLDLPVQQLLQIAKSAKSVLRLGLDVGGGTGSFAAAMKVRNVTVVTTTMNVVAPYSEAVALRGLVPLHVPLQQRLPMFDGVVDIVRCGRAVNRWIPVTMLEFLLFDVDRVLRGGGYLWLDHFFSKGVDLEKVYKPLIAKMGYKKVKWATGNKTDAGGVKHGELYLTALLQKPLSR