Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029841.t1 | XP_013468202.1 | 100 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 3.10E-31 | 144.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029841.t1 | Q9SP55 | 60.2 | 108 | 43 | 0 | 4 | 111 | 2 | 109 | 2.9e-22 | 105.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029841.t1 | I3S6I7 | 100.0 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.2e-31 | 144.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029841 | MS.gene22436 | PPI |
MS.gene029841 | MS.gene007513 | PPI |
MS.gene029841 | MS.gene007434 | PPI |
MS.gene029841 | MS.gene028232 | PPI |
MS.gene029841 | MS.gene08393 | PPI |
MS.gene35221 | MS.gene029841 | PPI |
MS.gene029841 | MS.gene45416 | PPI |
MS.gene029841 | MS.gene24597 | PPI |
MS.gene029841 | MS.gene20061 | PPI |
MS.gene023231 | MS.gene029841 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029841.t1 | MTR_1g064540 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.08e-76 | 221 |
MS.gene029841.t1 | MTR_7g101170 | 80.374 | 107 | 21 | 0 | 5 | 111 | 3 | 109 | 7.90e-55 | 166 |
MS.gene029841.t1 | MTR_1g064540 | 100.000 | 81 | 0 | 0 | 32 | 112 | 10 | 90 | 1.46e-52 | 160 |
MS.gene029841.t1 | MTR_7g007770 | 58.095 | 105 | 44 | 0 | 7 | 111 | 46 | 150 | 5.10e-38 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029841.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
MS.gene029841.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
MS.gene029841.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
MS.gene029841.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
MS.gene029841.t1 | AT4G23710 | 67.327 | 101 | 33 | 0 | 10 | 110 | 4 | 104 | 3.32e-40 | 129 |
MS.gene029841.t1 | AT4G25950 | 56.604 | 106 | 44 | 1 | 5 | 110 | 3 | 106 | 3.68e-34 | 114 |
MS.gene029841.t1 | AT4G25950 | 65.079 | 63 | 22 | 0 | 5 | 67 | 3 | 65 | 1.59e-20 | 79.0 |
Find 21 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACAGTTGTTACATGCTTA+AGG | 0.347547 | 1.2:-49634283 | None:intergenic |
ATACAGAGTAGCGGTGATTC+TGG | 0.360489 | 1.2:+49634164 | MS.gene029841:intron |
AGCCAAAGAAGAGGCTGAAA+AGG | 0.415151 | 1.2:+49633990 | MS.gene029841:CDS |
TCCTTGACCCCTGTTGGATG+TGG | 0.426476 | 1.2:-49631792 | None:intergenic |
GAATGGCATCCACATCCAAC+AGG | 0.432782 | 1.2:+49631783 | None:intergenic |
AATTCCTCCTTGACCCCTGT+TGG | 0.435539 | 1.2:-49631798 | None:intergenic |
AAAAGGAGATTGCTGCATAC+CGG | 0.478243 | 1.2:+49634007 | MS.gene029841:CDS |
AGGAGGAATTCAGCAGTTGT+TGG | 0.519580 | 1.2:+49631811 | MS.gene029841:CDS |
AAAGGAGATTGCTGCATACC+GGG | 0.538412 | 1.2:+49634008 | MS.gene029841:CDS |
TCCACATCCAACAGGGGTCA+AGG | 0.545599 | 1.2:+49631791 | MS.gene029841:CDS |
TGCATACCGGGCTAAGCTTG+AGG | 0.552923 | 1.2:+49634020 | MS.gene029841:CDS |
TGTTACATGCTTAAGGAGCA+TGG | 0.571889 | 1.2:-49634276 | None:intergenic |
ACTCGGCCTCAAGCTTAGCC+CGG | 0.584871 | 1.2:-49634026 | None:intergenic |
CGAGTTTCAAAAGAAAGTGT+CGG | 0.626015 | 1.2:+49634044 | MS.gene029841:CDS |
TTCCTATGAATACAGAGTAG+CGG | 0.626460 | 1.2:+49634155 | MS.gene029841:intron |
GTTGAAACAAGCCAAAGAAG+AGG | 0.654824 | 1.2:+49633981 | MS.gene029841:CDS |
AATCCATCACCTGAAAACAG+AGG | 0.680056 | 1.2:+49634226 | MS.gene029841:CDS |
AATGGCATCCACATCCAACA+GGG | 0.688516 | 1.2:+49631784 | None:intergenic |
CAGCTGAACAAGAAGCACAA+CGG | 0.700252 | 1.2:+49631834 | MS.gene029841:CDS |
ACATCCAACAGGGGTCAAGG+AGG | 0.701671 | 1.2:+49631794 | MS.gene029841:CDS |
ATGGCATCCACATCCAACAG+GGG | 0.715900 | 1.2:+49631785 | MS.gene029841:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGTTACAATATATAAAGT+GGG | + | chr1.2:49633458-49633477 | MS.gene029841:intron | 15.0% |
!! | ACAATAATAGTATAATAACA+TGG | + | chr1.2:49633264-49633283 | MS.gene029841:intron | 15.0% |
!! | TAAAGTTACAATATATAAAG+TGG | + | chr1.2:49633457-49633476 | MS.gene029841:intron | 15.0% |
!! | TTTAATTCTACATCAAATAA+GGG | + | chr1.2:49633488-49633507 | MS.gene029841:intron | 15.0% |
!!! | TTTTAATTCTACATCAAATA+AGG | + | chr1.2:49633487-49633506 | MS.gene029841:intron | 15.0% |
!! | AAATAAGTTGTTCATTCAAA+CGG | + | chr1.2:49632552-49632571 | MS.gene029841:intron | 20.0% |
!! | AAATAGCTCTTATTCTTATA+AGG | + | chr1.2:49632648-49632667 | MS.gene029841:intron | 20.0% |
!! | AATTATTTGAGCATATCTAT+TGG | + | chr1.2:49632325-49632344 | MS.gene029841:intron | 20.0% |
!! | AGTTTATGAAAAATAGCTTA+TGG | + | chr1.2:49632226-49632245 | MS.gene029841:intron | 20.0% |
!! | ATTCCATTTAAATAATGGTA+TGG | + | chr1.2:49633672-49633691 | MS.gene029841:intron | 20.0% |
!! | TAATTAAGCACTTATCATAT+AGG | - | chr1.2:49632587-49632606 | None:intergenic | 20.0% |
!! | TACCATTATTTAAATGGAAT+AGG | - | chr1.2:49633672-49633691 | None:intergenic | 20.0% |
!! | TATCATAGAATAAGATAAAG+CGG | - | chr1.2:49634109-49634128 | None:intergenic | 20.0% |
!!! | TTGTTTGGATTTTAAAGAAA+TGG | + | chr1.2:49632862-49632881 | MS.gene029841:intron | 20.0% |
!!! | TTTTTCATAAACTATTGTAG+AGG | - | chr1.2:49632219-49632238 | None:intergenic | 20.0% |
! | AAACTATTGTAGAGGATTTA+TGG | - | chr1.2:49632211-49632230 | None:intergenic | 25.0% |
! | AACTAATCAATGTTCTATTC+TGG | + | chr1.2:49633931-49633950 | MS.gene029841:intron | 25.0% |
! | AATAAGTTGTTCATTCAAAC+GGG | + | chr1.2:49632553-49632572 | MS.gene029841:intron | 25.0% |
! | ATACTATTATTGTTGAACCA+AGG | - | chr1.2:49633257-49633276 | None:intergenic | 25.0% |
! | ATTTCCACTACTAGAAAAAT+CGG | + | chr1.2:49633954-49633973 | MS.gene029841:intron | 25.0% |
! | CATCCATACCATTATTTAAA+TGG | - | chr1.2:49633678-49633697 | None:intergenic | 25.0% |
! | CCAATATAAAAAGAATAACG+AGG | - | chr1.2:49633786-49633805 | None:intergenic | 25.0% |
! | GTCCTATTCCATTTAAATAA+TGG | + | chr1.2:49633667-49633686 | MS.gene029841:intron | 25.0% |
! | TAAAAAATTTACTGCAGAAG+TGG | + | chr1.2:49632708-49632727 | MS.gene029841:intron | 25.0% |
! | TAAAAATACATAGTAGCTTG+TGG | + | chr1.2:49633424-49633443 | MS.gene029841:intron | 25.0% |
! | TAAAACAACAATTCAAGAAG+AGG | - | chr1.2:49633209-49633228 | None:intergenic | 25.0% |
! | TCAAATAATTCAATCCAAAC+AGG | - | chr1.2:49632315-49632334 | None:intergenic | 25.0% |
! | TGGAATGACATTATATTGTT+TGG | + | chr1.2:49632847-49632866 | MS.gene029841:intron | 25.0% |
! | TTCAAATAAGCGAAATAGAA+TGG | - | chr1.2:49633718-49633737 | None:intergenic | 25.0% |
! | TTTATGACATGTTCATAAAC+AGG | + | chr1.2:49632397-49632416 | MS.gene029841:intron | 25.0% |
!! | ATCATGATTTCATCCAATTT+TGG | + | chr1.2:49631935-49631954 | MS.gene029841:intron | 25.0% |
!! | CCTCGTTATTCTTTTTATAT+TGG | + | chr1.2:49633783-49633802 | MS.gene029841:intron | 25.0% |
!! | GTTTCTTTTTCTTTTTACCT+TGG | + | chr1.2:49633237-49633256 | MS.gene029841:intron | 25.0% |
!! | TCATGATTTCATCCAATTTT+GGG | + | chr1.2:49631936-49631955 | MS.gene029841:intron | 25.0% |
!! | TCTAAACAAAAGTTTTGCTT+TGG | - | chr1.2:49633359-49633378 | None:intergenic | 25.0% |
!!! | TCAAAATAGCTTTATACTTG+AGG | + | chr1.2:49632289-49632308 | MS.gene029841:intron | 25.0% |
!!! | TTGGATTTTAAAGAAATGGA+AGG | + | chr1.2:49632866-49632885 | MS.gene029841:intron | 25.0% |
!!! | TTTTAAAGAAATGGAAGGAT+TGG | + | chr1.2:49632871-49632890 | MS.gene029841:intron | 25.0% |
AAGTATTTGTGAGACTACTT+GGG | + | chr1.2:49632132-49632151 | MS.gene029841:intron | 30.0% | |
ACAAAAAGAGCAATGACTTA+AGG | + | chr1.2:49633399-49633418 | MS.gene029841:intron | 30.0% | |
AGCAAAATGAAGTGATATGA+TGG | - | chr1.2:49632930-49632949 | None:intergenic | 30.0% | |
ATAAGATCATCTCATCCTTA+GGG | + | chr1.2:49632775-49632794 | MS.gene029841:intron | 30.0% | |
ATAAGTTGTTCATTCAAACG+GGG | + | chr1.2:49632554-49632573 | MS.gene029841:intron | 30.0% | |
ATCAATTCAAAGATACCCTA+AGG | - | chr1.2:49632793-49632812 | None:intergenic | 30.0% | |
ATCCTATACATCCCAAATTT+GGG | - | chr1.2:49632955-49632974 | None:intergenic | 30.0% | |
GGTGGATAATAAGGTTATAA+GGG | - | chr1.2:49633004-49633023 | None:intergenic | 30.0% | |
TAAGTATTTGTGAGACTACT+TGG | + | chr1.2:49632131-49632150 | MS.gene029841:intron | 30.0% | |
TCTTATTCTTATAAGGCTGT+TGG | + | chr1.2:49632655-49632674 | MS.gene029841:intron | 30.0% | |
TGAAAAGGAATAGAATGGAA+TGG | + | chr1.2:49632827-49632846 | MS.gene029841:intron | 30.0% | |
TTGAATTGATGGAACATAGT+GGG | + | chr1.2:49632803-49632822 | MS.gene029841:intron | 30.0% | |
TTTGAATTGATGGAACATAG+TGG | + | chr1.2:49632802-49632821 | MS.gene029841:intron | 30.0% | |
! | TGGTGGATAATAAGGTTATA+AGG | - | chr1.2:49633005-49633024 | None:intergenic | 30.0% |
! | TTAGGGTATCTTTGAATTGA+TGG | + | chr1.2:49632792-49632811 | MS.gene029841:intron | 30.0% |
!!! | AAGTGGATTTTGACTTATGA+GGG | + | chr1.2:49632725-49632744 | MS.gene029841:intron | 30.0% |
!!! | CACAAGATTGGTTTTAGAAT+AGG | - | chr1.2:49633084-49633103 | None:intergenic | 30.0% |
!!! | GGATTTTTTCTTCAGTTTCT+TGG | - | chr1.2:49634211-49634230 | None:intergenic | 30.0% |
!!! | GTTGTTTTAATAAGCTATGC+TGG | - | chr1.2:49632447-49632466 | None:intergenic | 30.0% |
!!! | TACTTGTTTTAAGCTCAGTT+TGG | - | chr1.2:49632620-49632639 | None:intergenic | 30.0% |
!!! | TGCAAGATAGGTTTTAGAAT+AGG | - | chr1.2:49633146-49633165 | None:intergenic | 30.0% |
AAACGATCCATACCATTTGA+TGG | - | chr1.2:49633566-49633585 | None:intergenic | 35.0% | |
AAAGAGGAAGAACACAAGAT+TGG | - | chr1.2:49633033-49633052 | None:intergenic | 35.0% | |
AAGAAATGGAAGGATTGGAT+TGG | + | chr1.2:49632876-49632895 | MS.gene029841:intron | 35.0% | |
AATCTTGTGTTCTTCCTCTT+TGG | + | chr1.2:49633032-49633051 | MS.gene029841:intron | 35.0% | |
AGCATTTGATGGAACATAGT+AGG | - | chr1.2:49633636-49633655 | None:intergenic | 35.0% | |
AGCGTAATAAGACCCAAAAT+TGG | - | chr1.2:49631951-49631970 | None:intergenic | 35.0% | |
AGGAAAACATGCATGTAAGT+TGG | - | chr1.2:49634140-49634159 | None:intergenic | 35.0% | |
ATTGTGAATGCTGCGAAAAA+TGG | + | chr1.2:49631857-49631876 | MS.gene029841:CDS | 35.0% | |
CATAAGATCATCTCATCCTT+AGG | + | chr1.2:49632774-49632793 | MS.gene029841:intron | 35.0% | |
CATCCTATACATCCCAAATT+TGG | - | chr1.2:49632956-49632975 | None:intergenic | 35.0% | |
CTATGTTCCATCAAATGCTA+TGG | + | chr1.2:49633637-49633656 | MS.gene029841:intron | 35.0% | |
GCATTTGATGGAACATAGTA+GGG | - | chr1.2:49633635-49633654 | None:intergenic | 35.0% | |
GTATTGAAATAGATTCCACC+AGG | - | chr1.2:49632904-49632923 | None:intergenic | 35.0% | |
GTTTGCAGCAAAGAATATAG+TGG | + | chr1.2:49633328-49633347 | MS.gene029841:intron | 35.0% | |
TAAGTATTTGTGAGACTGCT+TGG | + | chr1.2:49632097-49632116 | MS.gene029841:intron | 35.0% | |
TCACAGTTGTTACATGCTTA+AGG | - | chr1.2:49634286-49634305 | None:intergenic | 35.0% | |
TCCTATACATCCCAAATTTG+GGG | - | chr1.2:49632954-49632973 | None:intergenic | 35.0% | |
TGGATGAAATCATGATTGCA+GGG | - | chr1.2:49631931-49631950 | None:intergenic | 35.0% | |
TGGGATGAAAAGGAATAGAA+TGG | + | chr1.2:49632822-49632841 | MS.gene029841:intron | 35.0% | |
TTCCTATGAATACAGAGTAG+CGG | + | chr1.2:49634155-49634174 | MS.gene029841:intron | 35.0% | |
TTGGATGAAATCATGATTGC+AGG | - | chr1.2:49631932-49631951 | None:intergenic | 35.0% | |
! | AAAGCATCCATAGCATTTGA+TGG | - | chr1.2:49633647-49633666 | None:intergenic | 35.0% |
! | AGTCTAAAGTGGGATTTAGT+TGG | - | chr1.2:49631999-49632018 | None:intergenic | 35.0% |
! | AGTTCAAAGCTAGTCTAAAG+TGG | - | chr1.2:49632010-49632029 | None:intergenic | 35.0% |
! | CAAATTTGGGATGTATAGGA+TGG | + | chr1.2:49632954-49632973 | MS.gene029841:intron | 35.0% |
! | CATTTTGCTTCCCCAAATTT+GGG | + | chr1.2:49632941-49632960 | MS.gene029841:intron | 35.0% |
! | CGAGTTTCAAAAGAAAGTGT+CGG | + | chr1.2:49634044-49634063 | MS.gene029841:CDS | 35.0% |
! | GTTCAAAGCTAGTCTAAAGT+GGG | - | chr1.2:49632009-49632028 | None:intergenic | 35.0% |
! | TCATTTTGCTTCCCCAAATT+TGG | + | chr1.2:49632940-49632959 | MS.gene029841:intron | 35.0% |
!! | TAGACTAGCTTTGAACTTCT+AGG | + | chr1.2:49632013-49632032 | MS.gene029841:intron | 35.0% |
!!! | CGACACTTTCTTTTGAAACT+CGG | - | chr1.2:49634046-49634065 | None:intergenic | 35.0% |
!!! | GAAGTGGATTTTGACTTATG+AGG | + | chr1.2:49632724-49632743 | MS.gene029841:intron | 35.0% |
AAAAGGAGATTGCTGCATAC+CGG | + | chr1.2:49634007-49634026 | MS.gene029841:CDS | 40.0% | |
AATCCATCACCTGAAAACAG+AGG | + | chr1.2:49634226-49634245 | MS.gene029841:CDS | 40.0% | |
ACAGAGGAAGAATGCAAGAT+AGG | - | chr1.2:49633158-49633177 | None:intergenic | 40.0% | |
AGACTACTTGGGAGAACTTA+TGG | + | chr1.2:49632143-49632162 | MS.gene029841:intron | 40.0% | |
AGTGTTCGCTAAAATGTGCA+TGG | - | chr1.2:49633900-49633919 | None:intergenic | 40.0% | |
ATTTGCAGCGAAGCTAAATG+AGG | + | chr1.2:49632679-49632698 | MS.gene029841:intron | 40.0% | |
CAATCACGTATAAACGCATG+AGG | - | chr1.2:49633872-49633891 | None:intergenic | 40.0% | |
CAATCTTGTGTTCTTCCTCT+CGG | + | chr1.2:49633031-49633050 | MS.gene029841:intron | 40.0% | |
CACTACTAGAAAAATCGGCT+AGG | + | chr1.2:49633959-49633978 | MS.gene029841:intron | 40.0% | |
CTCTGTTCCATCAAATGGTA+TGG | + | chr1.2:49633556-49633575 | MS.gene029841:intron | 40.0% | |
CTTTATACTTGAGGCCTGTT+TGG | + | chr1.2:49632298-49632317 | MS.gene029841:intron | 40.0% | |
GTCACAAGTGTTTATGCCAA+TGG | - | chr1.2:49632351-49632370 | None:intergenic | 40.0% | |
GTTGAAACAAGCCAAAGAAG+AGG | + | chr1.2:49633981-49634000 | MS.gene029841:CDS | 40.0% | |
TATCTTGCATTCTTCCTCTG+TGG | + | chr1.2:49633157-49633176 | MS.gene029841:intron | 40.0% | |
TCTTGATGTGCAATGAGCAT+GGG | + | chr1.2:49633832-49633851 | MS.gene029841:intron | 40.0% | |
TGAGCATATCTATTGGCCAT+TGG | + | chr1.2:49632332-49632351 | MS.gene029841:intron | 40.0% | |
TGTTACATGCTTAAGGAGCA+TGG | - | chr1.2:49634279-49634298 | None:intergenic | 40.0% | |
TTCTTGATGTGCAATGAGCA+TGG | + | chr1.2:49633831-49633850 | MS.gene029841:intron | 40.0% | |
TTTGATGGAACATAGTAGGG+TGG | - | chr1.2:49633632-49633651 | None:intergenic | 40.0% | |
TTTGCAGCGAAGCTAAATGA+GGG | + | chr1.2:49632680-49632699 | MS.gene029841:intron | 40.0% | |
! | AGAACACAAGATTGGTTGCA+TGG | - | chr1.2:49633025-49633044 | None:intergenic | 40.0% |
! | ATGGATGCTTTGTTGCATTC+TGG | + | chr1.2:49633691-49633710 | MS.gene029841:intron | 40.0% |
! | TCCCCAAATTTGGGATGTAT+AGG | + | chr1.2:49632950-49632969 | MS.gene029841:intron | 40.0% |
! | TGGAACATAGTGGGATGAAA+AGG | + | chr1.2:49632812-49632831 | MS.gene029841:intron | 40.0% |
! | TTCTATCAGCCTCTGTTTTC+AGG | - | chr1.2:49634238-49634257 | None:intergenic | 40.0% |
!! | AGCTTTGAACTTCTAGGACT+AGG | + | chr1.2:49632019-49632038 | MS.gene029841:intron | 40.0% |
!! | CTAGCCGATTTTTCTAGTAG+TGG | - | chr1.2:49633961-49633980 | None:intergenic | 40.0% |
!! | TGGTTGCATGGTGGATAATA+AGG | - | chr1.2:49633013-49633032 | None:intergenic | 40.0% |
!! | TTTGAACTTCTAGGACTAGG+AGG | + | chr1.2:49632022-49632041 | MS.gene029841:intron | 40.0% |
AAAGGAGATTGCTGCATACC+GGG | + | chr1.2:49634008-49634027 | MS.gene029841:CDS | 45.0% | |
AGCCAAAGAAGAGGCTGAAA+AGG | + | chr1.2:49633990-49634009 | MS.gene029841:CDS | 45.0% | |
AGGAGGAATTCAGCAGTTGT+TGG | + | chr1.2:49631811-49631830 | MS.gene029841:CDS | 45.0% | |
AGGGTGGAACTGAACATAGT+AGG | - | chr1.2:49633616-49633635 | None:intergenic | 45.0% | |
ATACAGAGTAGCGGTGATTC+TGG | + | chr1.2:49634164-49634183 | MS.gene029841:intron | 45.0% | |
CACCGCTACTCTGTATTCAT+AGG | - | chr1.2:49634160-49634179 | None:intergenic | 45.0% | |
CATAGTAGGGTGGAACTGAA+CGG | - | chr1.2:49633602-49633621 | None:intergenic | 45.0% | |
CCATTGTTGTAGAGCCAAAG+AGG | - | chr1.2:49633049-49633068 | None:intergenic | 45.0% | |
CGAGAGGAAGAACACAAGAT+TGG | - | chr1.2:49633096-49633115 | None:intergenic | 45.0% | |
CTCTGCTCTGTTCCATCAAA+TGG | + | chr1.2:49633551-49633570 | MS.gene029841:intron | 45.0% | |
GATTGCAGGGCAAAGAACAT+TGG | - | chr1.2:49631918-49631937 | None:intergenic | 45.0% | |
GGGTGGAACTGAACATAGTA+GGG | - | chr1.2:49633615-49633634 | None:intergenic | 45.0% | |
TCCTCTCGGTTCTACAACAA+TGG | + | chr1.2:49633108-49633127 | MS.gene029841:intron | 45.0% | |
TGGAACTGAACATAGTAGGG+TGG | - | chr1.2:49633612-49633631 | None:intergenic | 45.0% | |
! | ACACAAGATTGGTTGCATGG+TGG | - | chr1.2:49633022-49633041 | None:intergenic | 45.0% |
! | CAGCTGAACAAGAAGCACAA+CGG | + | chr1.2:49631834-49631853 | MS.gene029841:CDS | 45.0% |
! | CTCCTTTTCAGCCTCTTCTT+TGG | - | chr1.2:49633995-49634014 | None:intergenic | 45.0% |
!! | CCTCTTTGGCTCTACAACAA+TGG | + | chr1.2:49633046-49633065 | MS.gene029841:intron | 45.0% |
AATACAGCAGCCACTGAAGC+AGG | - | chr1.2:49633184-49633203 | None:intergenic | 50.0% | |
AATTCCTCCTTGACCCCTGT+TGG | - | chr1.2:49631801-49631820 | None:intergenic | 50.0% | |
AGGGCAAAGAACATTGGCAC+AGG | - | chr1.2:49631912-49631931 | None:intergenic | 50.0% | |
ATACAGCAGCCACTGAAGCA+GGG | - | chr1.2:49633183-49633202 | None:intergenic | 50.0% | |
ATGGCATCCACATCCAACAG+GGG | + | chr1.2:49631785-49631804 | MS.gene029841:CDS | 50.0% | |
GCCATTGTTGTAGAACCGAG+AGG | - | chr1.2:49633112-49633131 | None:intergenic | 50.0% | |
! | AGGATTGGATTGGAACCTGG+TGG | + | chr1.2:49632886-49632905 | MS.gene029841:intron | 50.0% |
! | GGAAGGATTGGATTGGAACC+TGG | + | chr1.2:49632883-49632902 | MS.gene029841:intron | 50.0% |
!!! | CAGCCTCTGTTTTCAGGTGA+TGG | - | chr1.2:49634232-49634251 | None:intergenic | 50.0% |
ACATCCAACAGGGGTCAAGG+AGG | + | chr1.2:49631794-49631813 | MS.gene029841:CDS | 55.0% | |
TCCACATCCAACAGGGGTCA+AGG | + | chr1.2:49631791-49631810 | MS.gene029841:CDS | 55.0% | |
TCCTTGACCCCTGTTGGATG+TGG | - | chr1.2:49631795-49631814 | None:intergenic | 55.0% | |
TGCATACCGGGCTAAGCTTG+AGG | + | chr1.2:49634020-49634039 | MS.gene029841:CDS | 55.0% | |
ACTCGGCCTCAAGCTTAGCC+CGG | - | chr1.2:49634029-49634048 | None:intergenic | 60.0% | |
CCACTGAAGCAGGGCCACAG+AGG | - | chr1.2:49633174-49633193 | None:intergenic | 65.0% | |
CCTCTGTGGCCCTGCTTCAG+TGG | + | chr1.2:49633171-49633190 | MS.gene029841:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 49631785 | 49634313 | 49631785 | ID=MS.gene029841 |
chr1.2 | mRNA | 49631785 | 49634313 | 49631785 | ID=MS.gene029841.t1;Parent=MS.gene029841 |
chr1.2 | exon | 49631785 | 49631878 | 49631785 | ID=MS.gene029841.t1.exon1;Parent=MS.gene029841.t1 |
chr1.2 | CDS | 49631785 | 49631878 | 49631785 | ID=cds.MS.gene029841.t1;Parent=MS.gene029841.t1 |
chr1.2 | exon | 49633968 | 49634068 | 49633968 | ID=MS.gene029841.t1.exon2;Parent=MS.gene029841.t1 |
chr1.2 | CDS | 49633968 | 49634068 | 49633968 | ID=cds.MS.gene029841.t1;Parent=MS.gene029841.t1 |
chr1.2 | exon | 49634170 | 49634313 | 49634170 | ID=MS.gene029841.t1.exon3;Parent=MS.gene029841.t1 |
chr1.2 | CDS | 49634170 | 49634313 | 49634170 | ID=cds.MS.gene029841.t1;Parent=MS.gene029841.t1 |
Gene Sequence |
Protein sequence |