Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45416.t1 | XP_013468202.1 | 100 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 3.10E-31 | 144.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45416.t1 | Q9SP55 | 60.2 | 108 | 43 | 0 | 4 | 111 | 2 | 109 | 2.9e-22 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45416.t1 | I3S6I7 | 100.0 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.2e-31 | 144.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049653 | MS.gene45416 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene45416 | 0.830044 | 3.66E-55 | -1.69E-46 |
| MS.gene050288 | MS.gene45416 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene050320 | MS.gene45416 | 0.805558 | 1.26E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene45416 | 0.814958 | 1.18E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene45416 | 0.804503 | 2.09E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene45416 | 0.804239 | 2.38E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene45416 | 0.800403 | 1.47E-48 | -1.69E-46 |
| MS.gene051746 | MS.gene45416 | 0.80772 | 4.40E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene45416 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene45416 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene45416 | 0.826089 | 3.28E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene45416 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene45416 | 0.803226 | 3.86E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene45416 | 0.821077 | 4.89E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene45416 | 0.810249 | 1.27E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene45416 | 0.812081 | 5.07E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene45416 | 0.812647 | 3.82E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene45416 | 0.825971 | 3.50E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene45416 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene45416 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene45416 | 0.81 | 1.43E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene45416 | 0.836162 | 1.10E-56 | -1.69E-46 |
| MS.gene05795 | MS.gene45416 | 0.836253 | 1.04E-56 | -1.69E-46 |
| MS.gene057999 | MS.gene45416 | 0.826934 | 2.07E-54 | -1.69E-46 |
| MS.gene058054 | MS.gene45416 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene45416 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene058238 | MS.gene45416 | 0.829655 | 4.56E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene45416 | 0.840464 | 8.56E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene45416 | 0.814648 | 1.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24597 | MS.gene45416 | PPI |
| MS.gene007434 | MS.gene45416 | PPI |
| MS.gene028232 | MS.gene45416 | PPI |
| MS.gene007513 | MS.gene45416 | PPI |
| MS.gene35221 | MS.gene45416 | PPI |
| MS.gene45416 | MS.gene08393 | PPI |
| MS.gene029841 | MS.gene45416 | PPI |
| MS.gene22436 | MS.gene45416 | PPI |
| MS.gene023231 | MS.gene45416 | PPI |
| MS.gene45416 | MS.gene20061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45416.t1 | MTR_1g064540 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.08e-76 | 221 |
| MS.gene45416.t1 | MTR_7g101170 | 80.374 | 107 | 21 | 0 | 5 | 111 | 3 | 109 | 7.90e-55 | 166 |
| MS.gene45416.t1 | MTR_1g064540 | 100.000 | 81 | 0 | 0 | 32 | 112 | 10 | 90 | 1.46e-52 | 160 |
| MS.gene45416.t1 | MTR_7g007770 | 58.095 | 105 | 44 | 0 | 7 | 111 | 46 | 150 | 5.10e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45416.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene45416.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene45416.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene45416.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene45416.t1 | AT4G23710 | 67.327 | 101 | 33 | 0 | 10 | 110 | 4 | 104 | 3.32e-40 | 129 |
| MS.gene45416.t1 | AT4G25950 | 56.604 | 106 | 44 | 1 | 5 | 110 | 3 | 106 | 3.68e-34 | 114 |
| MS.gene45416.t1 | AT4G25950 | 65.079 | 63 | 22 | 0 | 5 | 67 | 3 | 65 | 1.59e-20 | 79.0 |
Find 22 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGTTGTTACATGCTTA+AGG | 0.347547 | 1.1:-48797239 | None:intergenic |
| ATACAGAGTAGCGGTGATTC+TGG | 0.360489 | 1.1:+48797120 | MS.gene45416:intron |
| AACAGAGGCTGATAGAATTT+CGG | 0.376260 | 1.1:+48797197 | MS.gene45416:CDS |
| AGCCAAAGAAGAGGCTGAAA+AGG | 0.415151 | 1.1:+48796946 | MS.gene45416:CDS |
| TCCTTGACCCCTGTTGGATG+TGG | 0.426476 | 1.1:-48794728 | None:intergenic |
| GAATGGCATCCACATCCAAC+AGG | 0.432782 | 1.1:+48794719 | None:intergenic |
| AATTCCTCCTTGACCCCTGT+TGG | 0.435539 | 1.1:-48794734 | None:intergenic |
| AAAAGGAGATTGCTGCATAC+CGG | 0.478243 | 1.1:+48796963 | MS.gene45416:CDS |
| AGGAGGAATTCAGCAGTTGT+TGG | 0.519580 | 1.1:+48794747 | MS.gene45416:CDS |
| AAAGGAGATTGCTGCATACC+GGG | 0.538412 | 1.1:+48796964 | MS.gene45416:CDS |
| TCCACATCCAACAGGGGTCA+AGG | 0.545599 | 1.1:+48794727 | MS.gene45416:CDS |
| TGCATACCGGGCTAAGCTTG+AGG | 0.552923 | 1.1:+48796976 | MS.gene45416:CDS |
| TGTTACATGCTTAAGGAGCA+TGG | 0.571889 | 1.1:-48797232 | None:intergenic |
| ACTCGGCCTCAAGCTTAGCC+CGG | 0.584871 | 1.1:-48796982 | None:intergenic |
| CGAGTTTCAAAAGAAAGTGT+CGG | 0.626015 | 1.1:+48797000 | MS.gene45416:CDS |
| TTCCTATGAATACAGAGTAG+CGG | 0.626460 | 1.1:+48797111 | MS.gene45416:intron |
| GTTGAAACAAGCCAAAGAAG+AGG | 0.654824 | 1.1:+48796937 | MS.gene45416:CDS |
| AATCCATCACCTGAAAACAG+AGG | 0.680056 | 1.1:+48797182 | MS.gene45416:CDS |
| AATGGCATCCACATCCAACA+GGG | 0.688516 | 1.1:+48794720 | None:intergenic |
| CAGCTGAACAAGAAGCACAA+CGG | 0.700252 | 1.1:+48794770 | MS.gene45416:CDS |
| ACATCCAACAGGGGTCAAGG+AGG | 0.701671 | 1.1:+48794730 | MS.gene45416:CDS |
| ATGGCATCCACATCCAACAG+GGG | 0.715900 | 1.1:+48794721 | MS.gene45416:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATTATAGAGAATTTA+TGG | - | chr1.1:48795147-48795166 | None:intergenic | 15.0% |
| !! | AAAGTTACAATATATAAAGT+GGG | + | chr1.1:48796437-48796456 | MS.gene45416:intron | 15.0% |
| !! | TAAAGTTACAATATATAAAG+TGG | + | chr1.1:48796436-48796455 | MS.gene45416:intron | 15.0% |
| !! | TTTAATTCTACATCAAATAA+GGG | + | chr1.1:48796467-48796486 | MS.gene45416:intron | 15.0% |
| !!! | TTTTAATTCTACATCAAATA+AGG | + | chr1.1:48796466-48796485 | MS.gene45416:intron | 15.0% |
| !! | AAATAAGTTGTTCATTCAAA+CGG | + | chr1.1:48795488-48795507 | MS.gene45416:intron | 20.0% |
| !! | AAATAGCTCTTATTCTTATA+AGG | + | chr1.1:48795584-48795603 | MS.gene45416:intron | 20.0% |
| !! | AATTATTTGAGCATATCTAT+TGG | + | chr1.1:48795261-48795280 | MS.gene45416:intron | 20.0% |
| !! | AGTTTATGAAAAATAGCTTA+TGG | + | chr1.1:48795162-48795181 | MS.gene45416:intron | 20.0% |
| !! | TAATTAAGCACTTATCATAT+AGG | - | chr1.1:48795523-48795542 | None:intergenic | 20.0% |
| !! | TATCATAGAATAAGATAAAG+CGG | - | chr1.1:48797065-48797084 | None:intergenic | 20.0% |
| !! | TTCAAATAAGCAAAATAGAA+TGG | - | chr1.1:48796677-48796696 | None:intergenic | 20.0% |
| !!! | TCAAAATAGCTTTATATTTG+AGG | + | chr1.1:48795225-48795244 | MS.gene45416:intron | 20.0% |
| !!! | TTGTTTGGATTTTAAAGAAA+TGG | + | chr1.1:48795841-48795860 | MS.gene45416:intron | 20.0% |
| ! | AACTAATCAATGTTCTATTC+TGG | + | chr1.1:48796887-48796906 | MS.gene45416:intron | 25.0% |
| ! | AAGCAATTACAGAAAAGAAA+AGG | - | chr1.1:48795729-48795748 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTCATTCAAAC+GGG | + | chr1.1:48795489-48795508 | MS.gene45416:intron | 25.0% |
| ! | ATACTATTATTGTTGAACCA+AGG | - | chr1.1:48796236-48796255 | None:intergenic | 25.0% |
| ! | ATTCCATTCAAATAATGGTA+TGG | + | chr1.1:48796631-48796650 | MS.gene45416:intron | 25.0% |
| ! | ATTTCCACTACTAGAAAAAT+CGG | + | chr1.1:48796910-48796929 | MS.gene45416:intron | 25.0% |
| ! | CCAATATAAAAAGAATAACG+AGG | - | chr1.1:48796745-48796764 | None:intergenic | 25.0% |
| ! | GAAAAGGAATTAGAATAGAA+TGG | + | chr1.1:48795806-48795825 | MS.gene45416:intron | 25.0% |
| ! | TAAAAAATTTACTGCAGAAG+TGG | + | chr1.1:48795644-48795663 | MS.gene45416:intron | 25.0% |
| ! | TAAAAATACATAGTAGCTTG+TGG | + | chr1.1:48796403-48796422 | MS.gene45416:intron | 25.0% |
| ! | TAAAACAACAATTGAAGAAG+AGG | - | chr1.1:48796188-48796207 | None:intergenic | 25.0% |
| ! | TACCATTATTTGAATGGAAT+AGG | - | chr1.1:48796631-48796650 | None:intergenic | 25.0% |
| ! | TCAAATAATTCAATCCAAAC+AGG | - | chr1.1:48795251-48795270 | None:intergenic | 25.0% |
| ! | TGGAATGACATTATATTGTT+TGG | + | chr1.1:48795826-48795845 | MS.gene45416:intron | 25.0% |
| ! | TTTATGACATGTTCATAAAC+AGG | + | chr1.1:48795333-48795352 | MS.gene45416:intron | 25.0% |
| !! | AACTAAAAGTTTGTTTGCAT+TGG | + | chr1.1:48794986-48795005 | MS.gene45416:intron | 25.0% |
| !! | ATCATGATTTCATCCAATTT+TGG | + | chr1.1:48794871-48794890 | MS.gene45416:intron | 25.0% |
| !! | CCTCGTTATTCTTTTTATAT+TGG | + | chr1.1:48796742-48796761 | MS.gene45416:intron | 25.0% |
| !! | GTTTCTTATTCTTTTTACCT+TGG | + | chr1.1:48796216-48796235 | MS.gene45416:intron | 25.0% |
| !! | TCATGATTTCATCCAATTTT+GGG | + | chr1.1:48794872-48794891 | MS.gene45416:intron | 25.0% |
| !! | TCTAAACAAAAGTTTTGCTT+TGG | - | chr1.1:48796338-48796357 | None:intergenic | 25.0% |
| !!! | ATACAGTCATTTTATGTCAA+TGG | + | chr1.1:48796708-48796727 | MS.gene45416:intron | 25.0% |
| !!! | TTGGATTTTAAAGAAATGGA+AGG | + | chr1.1:48795845-48795864 | MS.gene45416:intron | 25.0% |
| !!! | TTTTAAAGAAATGGAAGGAT+TGG | + | chr1.1:48795850-48795869 | MS.gene45416:intron | 25.0% |
| AAAAACTCATCTCAACCTTA+GGG | + | chr1.1:48795753-48795772 | MS.gene45416:intron | 30.0% | |
| AAGTATTTGTGAGACTACTT+GGG | + | chr1.1:48795068-48795087 | MS.gene45416:intron | 30.0% | |
| ACAAAAAGAGCAATGTCTTA+AGG | + | chr1.1:48796378-48796397 | MS.gene45416:intron | 30.0% | |
| AGCAAAATGAAGTGATATGA+TGG | - | chr1.1:48795909-48795928 | None:intergenic | 30.0% | |
| ATAAGTTGTTCATTCAAACG+GGG | + | chr1.1:48795490-48795509 | MS.gene45416:intron | 30.0% | |
| ATCAATTCAAAGATACCCTA+AGG | - | chr1.1:48795771-48795790 | None:intergenic | 30.0% | |
| ATCCTATACATCCCAAATTT+GGG | - | chr1.1:48795934-48795953 | None:intergenic | 30.0% | |
| CATCCATACCATTATTTGAA+TGG | - | chr1.1:48796637-48796656 | None:intergenic | 30.0% | |
| GGTGGATAATAAGGTTATAA+GGG | - | chr1.1:48795983-48796002 | None:intergenic | 30.0% | |
| GTCCTATTCCATTCAAATAA+TGG | + | chr1.1:48796626-48796645 | MS.gene45416:intron | 30.0% | |
| TAAGTATTTGTGAGACTACT+TGG | + | chr1.1:48795067-48795086 | MS.gene45416:intron | 30.0% | |
| TCTTATTCTTATAAGGCTGT+TGG | + | chr1.1:48795591-48795610 | MS.gene45416:intron | 30.0% | |
| TTGAATTGATGGAACATAGT+GGG | + | chr1.1:48795781-48795800 | MS.gene45416:intron | 30.0% | |
| TTTGAATTGATGGAACATAG+TGG | + | chr1.1:48795780-48795799 | MS.gene45416:intron | 30.0% | |
| ! | AGTGATATGATGGAATGTAT+TGG | - | chr1.1:48795899-48795918 | None:intergenic | 30.0% |
| ! | TGGTGGATAATAAGGTTATA+AGG | - | chr1.1:48795984-48796003 | None:intergenic | 30.0% |
| ! | TTAGGGTATCTTTGAATTGA+TGG | + | chr1.1:48795770-48795789 | MS.gene45416:intron | 30.0% |
| !!! | CACAAGATTGGTTTTAGAAT+AGG | - | chr1.1:48796063-48796082 | None:intergenic | 30.0% |
| !!! | GGATTTTTTCTTCAGTTTCT+TGG | - | chr1.1:48797167-48797186 | None:intergenic | 30.0% |
| !!! | GTTGTTTTAATAAGCTATGC+TGG | - | chr1.1:48795383-48795402 | None:intergenic | 30.0% |
| !!! | TACTTGTTTTAAGCTCAGTT+TGG | - | chr1.1:48795556-48795575 | None:intergenic | 30.0% |
| !!! | TGCAAGATAGGTTTTAGAAT+AGG | - | chr1.1:48796125-48796144 | None:intergenic | 30.0% |
| AAACGATCCATACCATTTGA+TGG | - | chr1.1:48796545-48796564 | None:intergenic | 35.0% | |
| AAAGAGGAAGAACACAAGAT+TGG | - | chr1.1:48796012-48796031 | None:intergenic | 35.0% | |
| AACAGAGGCTGATAGAATTT+CGG | + | chr1.1:48797197-48797216 | MS.gene45416:CDS | 35.0% | |
| AAGAAATGGAAGGATTGGAT+TGG | + | chr1.1:48795855-48795874 | MS.gene45416:intron | 35.0% | |
| AATCTTGTGTTCTTCCTCTT+TGG | + | chr1.1:48796011-48796030 | MS.gene45416:intron | 35.0% | |
| AGCATTTGATGGAACATAGT+AGG | - | chr1.1:48796595-48796614 | None:intergenic | 35.0% | |
| AGCGTAATAAGACCCAAAAT+TGG | - | chr1.1:48794887-48794906 | None:intergenic | 35.0% | |
| AGGAAAACATGCATGTAAGT+TGG | - | chr1.1:48797096-48797115 | None:intergenic | 35.0% | |
| ATTGTGAATGCTGCGAAAAA+TGG | + | chr1.1:48794793-48794812 | MS.gene45416:CDS | 35.0% | |
| CATCCTATACATCCCAAATT+TGG | - | chr1.1:48795935-48795954 | None:intergenic | 35.0% | |
| CTATGTTCCATCAAATGCTA+TGG | + | chr1.1:48796596-48796615 | MS.gene45416:intron | 35.0% | |
| GAAAAACTCATCTCAACCTT+AGG | + | chr1.1:48795752-48795771 | MS.gene45416:intron | 35.0% | |
| GCATTTGATGGAACATAGTA+GGG | - | chr1.1:48796594-48796613 | None:intergenic | 35.0% | |
| GTTTGCAGCAAAGAATATAG+TGG | + | chr1.1:48796307-48796326 | MS.gene45416:intron | 35.0% | |
| TAAGTATTTGTGAGACTGCT+TGG | + | chr1.1:48795033-48795052 | MS.gene45416:intron | 35.0% | |
| TCACAGTTGTTACATGCTTA+AGG | - | chr1.1:48797242-48797261 | None:intergenic | 35.0% | |
| TCCTATACATCCCAAATTTG+GGG | - | chr1.1:48795933-48795952 | None:intergenic | 35.0% | |
| TGGATGAAATCATGATTGCA+GGG | - | chr1.1:48794867-48794886 | None:intergenic | 35.0% | |
| TTCCTATGAATACAGAGTAG+CGG | + | chr1.1:48797111-48797130 | MS.gene45416:intron | 35.0% | |
| TTGGATGAAATCATGATTGC+AGG | - | chr1.1:48794868-48794887 | None:intergenic | 35.0% | |
| ! | AAAGCATCCATAGCATTTGA+TGG | - | chr1.1:48796606-48796625 | None:intergenic | 35.0% |
| ! | AGTCTAAAGTGGGATTTAGT+TGG | - | chr1.1:48794935-48794954 | None:intergenic | 35.0% |
| ! | AGTTCAAAGCTAGTCTAAAG+TGG | - | chr1.1:48794946-48794965 | None:intergenic | 35.0% |
| ! | CAAATTTGGGATGTATAGGA+TGG | + | chr1.1:48795933-48795952 | MS.gene45416:intron | 35.0% |
| ! | CATTTTGCTTCCCCAAATTT+GGG | + | chr1.1:48795920-48795939 | MS.gene45416:intron | 35.0% |
| ! | CGAGTTTCAAAAGAAAGTGT+CGG | + | chr1.1:48797000-48797019 | MS.gene45416:CDS | 35.0% |
| ! | CTTTATATTTGAGGCCTGTT+TGG | + | chr1.1:48795234-48795253 | MS.gene45416:intron | 35.0% |
| ! | GTTCAAAGCTAGTCTAAAGT+GGG | - | chr1.1:48794945-48794964 | None:intergenic | 35.0% |
| ! | TCATTTTGCTTCCCCAAATT+TGG | + | chr1.1:48795919-48795938 | MS.gene45416:intron | 35.0% |
| ! | TTTTGATGTGCAATGAGCAT+GGG | + | chr1.1:48796791-48796810 | MS.gene45416:intron | 35.0% |
| ! | TTTTTGATGTGCAATGAGCA+TGG | + | chr1.1:48796790-48796809 | MS.gene45416:intron | 35.0% |
| !! | TAGACTAGCTTTGAACTTCT+AGG | + | chr1.1:48794949-48794968 | MS.gene45416:intron | 35.0% |
| !!! | CGACACTTTCTTTTGAAACT+CGG | - | chr1.1:48797002-48797021 | None:intergenic | 35.0% |
| AAAAGGAGATTGCTGCATAC+CGG | + | chr1.1:48796963-48796982 | MS.gene45416:CDS | 40.0% | |
| AATCCATCACCTGAAAACAG+AGG | + | chr1.1:48797182-48797201 | MS.gene45416:CDS | 40.0% | |
| ACAGAGGAAGAATGCAAGAT+AGG | - | chr1.1:48796137-48796156 | None:intergenic | 40.0% | |
| AGACTACTTGGGAGAACTTA+TGG | + | chr1.1:48795079-48795098 | MS.gene45416:intron | 40.0% | |
| ATTTGCAGCGAAGCTAAATG+AGG | + | chr1.1:48795615-48795634 | MS.gene45416:intron | 40.0% | |
| CAATCTTGTGTTCTTCCTCT+CGG | + | chr1.1:48796010-48796029 | MS.gene45416:intron | 40.0% | |
| CACTACTAGAAAAATCGGCT+AGG | + | chr1.1:48796915-48796934 | MS.gene45416:intron | 40.0% | |
| CTCTGTTCCATCAAATGGTA+TGG | + | chr1.1:48796535-48796554 | MS.gene45416:intron | 40.0% | |
| GTATTGGAATAGATTCCACC+AGG | - | chr1.1:48795883-48795902 | None:intergenic | 40.0% | |
| GTCACAAGTGTTTATGCCAA+TGG | - | chr1.1:48795287-48795306 | None:intergenic | 40.0% | |
| GTTGAAACAAGCCAAAGAAG+AGG | + | chr1.1:48796937-48796956 | MS.gene45416:CDS | 40.0% | |
| TATCTTGCATTCTTCCTCTG+TGG | + | chr1.1:48796136-48796155 | MS.gene45416:intron | 40.0% | |
| TGAGCATATCTATTGGCCAT+TGG | + | chr1.1:48795268-48795287 | MS.gene45416:intron | 40.0% | |
| TGTTACATGCTTAAGGAGCA+TGG | - | chr1.1:48797235-48797254 | None:intergenic | 40.0% | |
| TTTGATGGAACATAGTAGGG+TGG | - | chr1.1:48796591-48796610 | None:intergenic | 40.0% | |
| TTTGCAGCGAAGCTAAATGA+GGG | + | chr1.1:48795616-48795635 | MS.gene45416:intron | 40.0% | |
| ! | AGAACACAAGATTGGTTGCA+TGG | - | chr1.1:48796004-48796023 | None:intergenic | 40.0% |
| ! | ATGGATGCTTTGTTGCATTC+TGG | + | chr1.1:48796650-48796669 | MS.gene45416:intron | 40.0% |
| ! | TCCCCAAATTTGGGATGTAT+AGG | + | chr1.1:48795929-48795948 | MS.gene45416:intron | 40.0% |
| ! | TGGAACATAGTGGGATGAAA+AGG | + | chr1.1:48795790-48795809 | MS.gene45416:intron | 40.0% |
| ! | TTCTATCAGCCTCTGTTTTC+AGG | - | chr1.1:48797194-48797213 | None:intergenic | 40.0% |
| !! | AGCTTTGAACTTCTAGGACT+AGG | + | chr1.1:48794955-48794974 | MS.gene45416:intron | 40.0% |
| !! | CTAGCCGATTTTTCTAGTAG+TGG | - | chr1.1:48796917-48796936 | None:intergenic | 40.0% |
| !! | TGGTTGCATGGTGGATAATA+AGG | - | chr1.1:48795992-48796011 | None:intergenic | 40.0% |
| !! | TTTGAACTTCTAGGACTAGG+AGG | + | chr1.1:48794958-48794977 | MS.gene45416:intron | 40.0% |
| AAAGGAGATTGCTGCATACC+GGG | + | chr1.1:48796964-48796983 | MS.gene45416:CDS | 45.0% | |
| AGCCAAAGAAGAGGCTGAAA+AGG | + | chr1.1:48796946-48796965 | MS.gene45416:CDS | 45.0% | |
| AGCGTTCGCTAAAATGTGCA+TGG | - | chr1.1:48796856-48796875 | None:intergenic | 45.0% | |
| AGGAGGAATTCAGCAGTTGT+TGG | + | chr1.1:48794747-48794766 | MS.gene45416:CDS | 45.0% | |
| ATACAGAGTAGCGGTGATTC+TGG | + | chr1.1:48797120-48797139 | MS.gene45416:intron | 45.0% | |
| CACCGCTACTCTGTATTCAT+AGG | - | chr1.1:48797116-48797135 | None:intergenic | 45.0% | |
| CATAGTAGGGTGGAACTGAA+CGG | - | chr1.1:48796581-48796600 | None:intergenic | 45.0% | |
| CCATTGTTGTAGAGCCAAAG+AGG | - | chr1.1:48796028-48796047 | None:intergenic | 45.0% | |
| CGAGAGGAAGAACACAAGAT+TGG | - | chr1.1:48796075-48796094 | None:intergenic | 45.0% | |
| CTCTGCTCTGTTCCATCAAA+TGG | + | chr1.1:48796530-48796549 | MS.gene45416:intron | 45.0% | |
| GATTGCAGGGCAAAGAACAT+TGG | - | chr1.1:48794854-48794873 | None:intergenic | 45.0% | |
| TCCTCTCGGTTCTACAACAA+TGG | + | chr1.1:48796087-48796106 | MS.gene45416:intron | 45.0% | |
| ! | ACACAAGATTGGTTGCATGG+TGG | - | chr1.1:48796001-48796020 | None:intergenic | 45.0% |
| ! | CAGCTGAACAAGAAGCACAA+CGG | + | chr1.1:48794770-48794789 | MS.gene45416:CDS | 45.0% |
| ! | CTCCTTTTCAGCCTCTTCTT+TGG | - | chr1.1:48796951-48796970 | None:intergenic | 45.0% |
| !! | CCTCTTTGGCTCTACAACAA+TGG | + | chr1.1:48796025-48796044 | MS.gene45416:intron | 45.0% |
| AATACAGCAGCCGTTGAAGC+AGG | - | chr1.1:48796163-48796182 | None:intergenic | 50.0% | |
| AATTCCTCCTTGACCCCTGT+TGG | - | chr1.1:48794737-48794756 | None:intergenic | 50.0% | |
| AGGGCAAAGAACATTGGCAC+AGG | - | chr1.1:48794848-48794867 | None:intergenic | 50.0% | |
| ATACAGCAGCCGTTGAAGCA+GGG | - | chr1.1:48796162-48796181 | None:intergenic | 50.0% | |
| ATGGCATCCACATCCAACAG+GGG | + | chr1.1:48794721-48794740 | MS.gene45416:CDS | 50.0% | |
| GCCATTGTTGTAGAACCGAG+AGG | - | chr1.1:48796091-48796110 | None:intergenic | 50.0% | |
| ! | AGGATTGGATTGGAACCTGG+TGG | + | chr1.1:48795865-48795884 | MS.gene45416:intron | 50.0% |
| ! | GGAAGGATTGGATTGGAACC+TGG | + | chr1.1:48795862-48795881 | MS.gene45416:intron | 50.0% |
| !!! | CAGCCTCTGTTTTCAGGTGA+TGG | - | chr1.1:48797188-48797207 | None:intergenic | 50.0% |
| ACATCCAACAGGGGTCAAGG+AGG | + | chr1.1:48794730-48794749 | MS.gene45416:CDS | 55.0% | |
| TCCACATCCAACAGGGGTCA+AGG | + | chr1.1:48794727-48794746 | MS.gene45416:CDS | 55.0% | |
| TCCTTGACCCCTGTTGGATG+TGG | - | chr1.1:48794731-48794750 | None:intergenic | 55.0% | |
| TGCATACCGGGCTAAGCTTG+AGG | + | chr1.1:48796976-48796995 | MS.gene45416:CDS | 55.0% | |
| ACTCGGCCTCAAGCTTAGCC+CGG | - | chr1.1:48796985-48797004 | None:intergenic | 60.0% | |
| CCTCTGTGGCCCTGCTTCAA+CGG | + | chr1.1:48796150-48796169 | MS.gene45416:intron | 60.0% | |
| CCGTTGAAGCAGGGCCACAG+AGG | - | chr1.1:48796153-48796172 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48794721 | 48797269 | 48794721 | ID=MS.gene45416 |
| chr1.1 | mRNA | 48794721 | 48797269 | 48794721 | ID=MS.gene45416.t1;Parent=MS.gene45416 |
| chr1.1 | exon | 48794721 | 48794814 | 48794721 | ID=MS.gene45416.t1.exon1;Parent=MS.gene45416.t1 |
| chr1.1 | CDS | 48794721 | 48794814 | 48794721 | ID=cds.MS.gene45416.t1;Parent=MS.gene45416.t1 |
| chr1.1 | exon | 48796924 | 48797024 | 48796924 | ID=MS.gene45416.t1.exon2;Parent=MS.gene45416.t1 |
| chr1.1 | CDS | 48796924 | 48797024 | 48796924 | ID=cds.MS.gene45416.t1;Parent=MS.gene45416.t1 |
| chr1.1 | exon | 48797126 | 48797269 | 48797126 | ID=MS.gene45416.t1.exon3;Parent=MS.gene45416.t1 |
| chr1.1 | CDS | 48797126 | 48797269 | 48797126 | ID=cds.MS.gene45416.t1;Parent=MS.gene45416.t1 |
| Gene Sequence |
| Protein sequence |
