Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24597.t1 | XP_013468202.1 | 100 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 3.10E-31 | 144.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24597.t1 | Q9SP55 | 60.2 | 108 | 43 | 0 | 4 | 111 | 2 | 109 | 2.9e-22 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24597.t1 | I3S6I7 | 100.0 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 2.2e-31 | 144.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene24597 | 0.800628 | 1.32E-48 | -1.69E-46 |
| MS.gene050114 | MS.gene24597 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene24597 | 0.823899 | 1.08E-53 | -1.69E-46 |
| MS.gene050320 | MS.gene24597 | 0.845162 | 4.82E-59 | -1.69E-46 |
| MS.gene050752 | MS.gene24597 | 0.818759 | 1.66E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene24597 | 0.827379 | 1.62E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene24597 | 0.825156 | 5.47E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene24597 | 0.855175 | 7.53E-62 | -1.69E-46 |
| MS.gene051756 | MS.gene24597 | 0.888722 | 4.59E-73 | -1.69E-46 |
| MS.gene051757 | MS.gene24597 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene24597 | 0.870746 | 1.16E-66 | -1.69E-46 |
| MS.gene052527 | MS.gene24597 | 0.81655 | 5.22E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene24597 | 0.83831 | 3.10E-57 | -1.69E-46 |
| MS.gene05344 | MS.gene24597 | -0.812398 | 4.33E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene24597 | 0.841744 | 3.95E-58 | -1.69E-46 |
| MS.gene054403 | MS.gene24597 | 0.814632 | 1.40E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene24597 | 0.814958 | 1.18E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene24597 | 0.800274 | 1.56E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene24597 | 0.839174 | 1.86E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene24597 | 0.843662 | 1.22E-58 | -1.69E-46 |
| MS.gene057999 | MS.gene24597 | 0.816573 | 5.16E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene24597 | 0.860269 | 2.32E-63 | -1.69E-46 |
| MS.gene058906 | MS.gene24597 | 0.819847 | 9.37E-53 | -1.69E-46 |
| MS.gene059050 | MS.gene24597 | 0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene24597 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene24597 | 0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene060465 | MS.gene24597 | 0.802886 | 4.54E-49 | -1.69E-46 |
| MS.gene060702 | MS.gene24597 | 0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene24597 | 0.818648 | 1.76E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24597 | MS.gene45416 | PPI |
| MS.gene023231 | MS.gene24597 | PPI |
| MS.gene24597 | MS.gene20061 | PPI |
| MS.gene007434 | MS.gene24597 | PPI |
| MS.gene028232 | MS.gene24597 | PPI |
| MS.gene24597 | MS.gene007513 | PPI |
| MS.gene35221 | MS.gene24597 | PPI |
| MS.gene029841 | MS.gene24597 | PPI |
| MS.gene24597 | MS.gene08393 | PPI |
| MS.gene22436 | MS.gene24597 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24597.t1 | MTR_1g064540 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.08e-76 | 221 |
| MS.gene24597.t1 | MTR_7g101170 | 80.374 | 107 | 21 | 0 | 5 | 111 | 3 | 109 | 7.90e-55 | 166 |
| MS.gene24597.t1 | MTR_1g064540 | 100.000 | 81 | 0 | 0 | 32 | 112 | 10 | 90 | 1.46e-52 | 160 |
| MS.gene24597.t1 | MTR_7g007770 | 58.095 | 105 | 44 | 0 | 7 | 111 | 46 | 150 | 5.10e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24597.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene24597.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene24597.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene24597.t1 | AT3G01390 | 74.766 | 107 | 27 | 0 | 5 | 111 | 3 | 109 | 1.73e-42 | 135 |
| MS.gene24597.t1 | AT4G23710 | 67.327 | 101 | 33 | 0 | 10 | 110 | 4 | 104 | 3.32e-40 | 129 |
| MS.gene24597.t1 | AT4G25950 | 56.604 | 106 | 44 | 1 | 5 | 110 | 3 | 106 | 3.68e-34 | 114 |
| MS.gene24597.t1 | AT4G25950 | 65.079 | 63 | 22 | 0 | 5 | 67 | 3 | 65 | 1.59e-20 | 79.0 |
Find 21 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAGTTGTTACATGCTTA+AGG | 0.347547 | 1.3:-46502928 | None:intergenic |
| ATACAGAGTAGCGGTGATTC+TGG | 0.360489 | 1.3:+46502809 | MS.gene24597:intron |
| AGCCAAAGAAGAGGCTGAAA+AGG | 0.415151 | 1.3:+46502635 | MS.gene24597:CDS |
| TCCTTGACCCCTGTTGGATG+TGG | 0.426476 | 1.3:-46500437 | None:intergenic |
| GAATGGCATCCACATCCAAC+AGG | 0.432782 | 1.3:+46500428 | None:intergenic |
| AATTCCTCCTTGACCCCTGT+TGG | 0.435539 | 1.3:-46500443 | None:intergenic |
| AAAAGGAGATTGCTGCATAC+CGG | 0.478243 | 1.3:+46502652 | MS.gene24597:CDS |
| AGGAGGAATTCAGCAGTTGT+TGG | 0.519580 | 1.3:+46500456 | MS.gene24597:CDS |
| AAAGGAGATTGCTGCATACC+GGG | 0.538412 | 1.3:+46502653 | MS.gene24597:CDS |
| TCCACATCCAACAGGGGTCA+AGG | 0.545599 | 1.3:+46500436 | MS.gene24597:CDS |
| TGCATACCGGGCTAAGCTTG+AGG | 0.552923 | 1.3:+46502665 | MS.gene24597:CDS |
| TGTTACATGCTTAAGGAGCA+TGG | 0.571889 | 1.3:-46502921 | None:intergenic |
| ACTCGGCCTCAAGCTTAGCC+CGG | 0.584871 | 1.3:-46502671 | None:intergenic |
| CGAGTTTCAAAAGAAAGTGT+CGG | 0.626015 | 1.3:+46502689 | MS.gene24597:CDS |
| TTCCTATGAATACAGAGTAG+CGG | 0.626460 | 1.3:+46502800 | MS.gene24597:intron |
| GTTGAAACAAGCCAAAGAAG+AGG | 0.654824 | 1.3:+46502626 | MS.gene24597:CDS |
| AATCCATCACCTGAAAACAG+AGG | 0.680056 | 1.3:+46502871 | MS.gene24597:CDS |
| AATGGCATCCACATCCAACA+GGG | 0.688516 | 1.3:+46500429 | None:intergenic |
| CAGCTGAACAAGAAGCACAA+CGG | 0.700252 | 1.3:+46500479 | MS.gene24597:CDS |
| ACATCCAACAGGGGTCAAGG+AGG | 0.701671 | 1.3:+46500439 | MS.gene24597:CDS |
| ATGGCATCCACATCCAACAG+GGG | 0.715900 | 1.3:+46500430 | MS.gene24597:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTACAATATATAAAGT+GGG | + | chr1.3:46502103-46502122 | MS.gene24597:intron | 15.0% |
| !! | ACAATAATAGTATAATAACA+TGG | + | chr1.3:46501909-46501928 | MS.gene24597:intron | 15.0% |
| !! | TAAAGTTACAATATATAAAG+TGG | + | chr1.3:46502102-46502121 | MS.gene24597:intron | 15.0% |
| !! | TTTAATTCTACATCAAATAA+GGG | + | chr1.3:46502133-46502152 | MS.gene24597:intron | 15.0% |
| !!! | TTTTAATTCTACATCAAATA+AGG | + | chr1.3:46502132-46502151 | MS.gene24597:intron | 15.0% |
| !! | AAATAAGTTGTTCATTCAAA+CGG | + | chr1.3:46501197-46501216 | MS.gene24597:intron | 20.0% |
| !! | AAATAGCTCTTATTCTTATA+AGG | + | chr1.3:46501293-46501312 | MS.gene24597:intron | 20.0% |
| !! | AATTATTTGAGCATATCTAT+TGG | + | chr1.3:46500970-46500989 | MS.gene24597:intron | 20.0% |
| !! | AGTTTATGAAAAATAGCTTA+TGG | + | chr1.3:46500871-46500890 | MS.gene24597:intron | 20.0% |
| !! | ATTCCATTTAAATAATGGTA+TGG | + | chr1.3:46502317-46502336 | MS.gene24597:intron | 20.0% |
| !! | TAATTAAGCACTTATCATAT+AGG | - | chr1.3:46501232-46501251 | None:intergenic | 20.0% |
| !! | TACCATTATTTAAATGGAAT+AGG | - | chr1.3:46502317-46502336 | None:intergenic | 20.0% |
| !! | TATCATAGAATAAGATAAAG+CGG | - | chr1.3:46502754-46502773 | None:intergenic | 20.0% |
| !!! | TTGTTTGGATTTTAAAGAAA+TGG | + | chr1.3:46501507-46501526 | MS.gene24597:intron | 20.0% |
| !!! | TTTTTCATAAACTATTGTAG+AGG | - | chr1.3:46500864-46500883 | None:intergenic | 20.0% |
| ! | AAACTATTGTAGAGGATTTA+TGG | - | chr1.3:46500856-46500875 | None:intergenic | 25.0% |
| ! | AACTAATCAATGTTCTATTC+TGG | + | chr1.3:46502576-46502595 | MS.gene24597:intron | 25.0% |
| ! | AATAAGTTGTTCATTCAAAC+GGG | + | chr1.3:46501198-46501217 | MS.gene24597:intron | 25.0% |
| ! | ATACTATTATTGTTGAACCA+AGG | - | chr1.3:46501902-46501921 | None:intergenic | 25.0% |
| ! | ATTTCCACTACTAGAAAAAT+CGG | + | chr1.3:46502599-46502618 | MS.gene24597:intron | 25.0% |
| ! | CATCCATACCATTATTTAAA+TGG | - | chr1.3:46502323-46502342 | None:intergenic | 25.0% |
| ! | CCAATATAAAAAGAATAACG+AGG | - | chr1.3:46502431-46502450 | None:intergenic | 25.0% |
| ! | GTCCTATTCCATTTAAATAA+TGG | + | chr1.3:46502312-46502331 | MS.gene24597:intron | 25.0% |
| ! | TAAAAAATTTACTGCAGAAG+TGG | + | chr1.3:46501353-46501372 | MS.gene24597:intron | 25.0% |
| ! | TAAAAATACATAGTAGCTTG+TGG | + | chr1.3:46502069-46502088 | MS.gene24597:intron | 25.0% |
| ! | TAAAACAACAATTCAAGAAG+AGG | - | chr1.3:46501854-46501873 | None:intergenic | 25.0% |
| ! | TCAAATAATTCAATCCAAAC+AGG | - | chr1.3:46500960-46500979 | None:intergenic | 25.0% |
| ! | TGGAATGACATTATATTGTT+TGG | + | chr1.3:46501492-46501511 | MS.gene24597:intron | 25.0% |
| ! | TTCAAATAAGCGAAATAGAA+TGG | - | chr1.3:46502363-46502382 | None:intergenic | 25.0% |
| ! | TTTATGACATGTTCATAAAC+AGG | + | chr1.3:46501042-46501061 | MS.gene24597:intron | 25.0% |
| !! | ATCATGATTTCATCCAATTT+TGG | + | chr1.3:46500580-46500599 | MS.gene24597:intron | 25.0% |
| !! | CCTCGTTATTCTTTTTATAT+TGG | + | chr1.3:46502428-46502447 | MS.gene24597:intron | 25.0% |
| !! | GTTTCTTTTTCTTTTTACCT+TGG | + | chr1.3:46501882-46501901 | MS.gene24597:intron | 25.0% |
| !! | TCATGATTTCATCCAATTTT+GGG | + | chr1.3:46500581-46500600 | MS.gene24597:intron | 25.0% |
| !! | TCTAAACAAAAGTTTTGCTT+TGG | - | chr1.3:46502004-46502023 | None:intergenic | 25.0% |
| !!! | TCAAAATAGCTTTATACTTG+AGG | + | chr1.3:46500934-46500953 | MS.gene24597:intron | 25.0% |
| !!! | TTGGATTTTAAAGAAATGGA+AGG | + | chr1.3:46501511-46501530 | MS.gene24597:intron | 25.0% |
| !!! | TTTTAAAGAAATGGAAGGAT+TGG | + | chr1.3:46501516-46501535 | MS.gene24597:intron | 25.0% |
| AAGTATTTGTGAGACTACTT+GGG | + | chr1.3:46500777-46500796 | MS.gene24597:intron | 30.0% | |
| ACAAAAAGAGCAATGACTTA+AGG | + | chr1.3:46502044-46502063 | MS.gene24597:intron | 30.0% | |
| AGCAAAATGAAGTGATATGA+TGG | - | chr1.3:46501575-46501594 | None:intergenic | 30.0% | |
| ATAAGATCATCTCATCCTTA+GGG | + | chr1.3:46501420-46501439 | MS.gene24597:intron | 30.0% | |
| ATAAGTTGTTCATTCAAACG+GGG | + | chr1.3:46501199-46501218 | MS.gene24597:intron | 30.0% | |
| ATCAATTCAAAGATACCCTA+AGG | - | chr1.3:46501438-46501457 | None:intergenic | 30.0% | |
| ATCCTATACATCCCAAATTT+GGG | - | chr1.3:46501600-46501619 | None:intergenic | 30.0% | |
| GGTGGATAATAAGGTTATAA+GGG | - | chr1.3:46501649-46501668 | None:intergenic | 30.0% | |
| TAAGTATTTGTGAGACTACT+TGG | + | chr1.3:46500776-46500795 | MS.gene24597:intron | 30.0% | |
| TCTTATTCTTATAAGGCTGT+TGG | + | chr1.3:46501300-46501319 | MS.gene24597:intron | 30.0% | |
| TGAAAAGGAATAGAATGGAA+TGG | + | chr1.3:46501472-46501491 | MS.gene24597:intron | 30.0% | |
| TTGAATTGATGGAACATAGT+GGG | + | chr1.3:46501448-46501467 | MS.gene24597:intron | 30.0% | |
| TTTGAATTGATGGAACATAG+TGG | + | chr1.3:46501447-46501466 | MS.gene24597:intron | 30.0% | |
| ! | TGGTGGATAATAAGGTTATA+AGG | - | chr1.3:46501650-46501669 | None:intergenic | 30.0% |
| ! | TTAGGGTATCTTTGAATTGA+TGG | + | chr1.3:46501437-46501456 | MS.gene24597:intron | 30.0% |
| !!! | AAGTGGATTTTGACTTATGA+GGG | + | chr1.3:46501370-46501389 | MS.gene24597:intron | 30.0% |
| !!! | CACAAGATTGGTTTTAGAAT+AGG | - | chr1.3:46501729-46501748 | None:intergenic | 30.0% |
| !!! | GGATTTTTTCTTCAGTTTCT+TGG | - | chr1.3:46502856-46502875 | None:intergenic | 30.0% |
| !!! | GTTGTTTTAATAAGCTATGC+TGG | - | chr1.3:46501092-46501111 | None:intergenic | 30.0% |
| !!! | TACTTGTTTTAAGCTCAGTT+TGG | - | chr1.3:46501265-46501284 | None:intergenic | 30.0% |
| !!! | TGCAAGATAGGTTTTAGAAT+AGG | - | chr1.3:46501791-46501810 | None:intergenic | 30.0% |
| AAACGATCCATACCATTTGA+TGG | - | chr1.3:46502211-46502230 | None:intergenic | 35.0% | |
| AAAGAGGAAGAACACAAGAT+TGG | - | chr1.3:46501678-46501697 | None:intergenic | 35.0% | |
| AAGAAATGGAAGGATTGGAT+TGG | + | chr1.3:46501521-46501540 | MS.gene24597:intron | 35.0% | |
| AATCTTGTGTTCTTCCTCTT+TGG | + | chr1.3:46501677-46501696 | MS.gene24597:intron | 35.0% | |
| AGCATTTGATGGAACATAGT+AGG | - | chr1.3:46502281-46502300 | None:intergenic | 35.0% | |
| AGCGTAATAAGACCCAAAAT+TGG | - | chr1.3:46500596-46500615 | None:intergenic | 35.0% | |
| AGGAAAACATGCATGTAAGT+TGG | - | chr1.3:46502785-46502804 | None:intergenic | 35.0% | |
| ATTGTGAATGCTGCGAAAAA+TGG | + | chr1.3:46500502-46500521 | MS.gene24597:CDS | 35.0% | |
| CATAAGATCATCTCATCCTT+AGG | + | chr1.3:46501419-46501438 | MS.gene24597:intron | 35.0% | |
| CATCCTATACATCCCAAATT+TGG | - | chr1.3:46501601-46501620 | None:intergenic | 35.0% | |
| CTATGTTCCATCAAATGCTA+TGG | + | chr1.3:46502282-46502301 | MS.gene24597:intron | 35.0% | |
| GCATTTGATGGAACATAGTA+GGG | - | chr1.3:46502280-46502299 | None:intergenic | 35.0% | |
| GTATTGAAATAGATTCCACC+AGG | - | chr1.3:46501549-46501568 | None:intergenic | 35.0% | |
| GTTTGCAGCAAAGAATATAG+TGG | + | chr1.3:46501973-46501992 | MS.gene24597:intron | 35.0% | |
| TAAGTATTTGTGAGACTGCT+TGG | + | chr1.3:46500742-46500761 | MS.gene24597:intron | 35.0% | |
| TCACAGTTGTTACATGCTTA+AGG | - | chr1.3:46502931-46502950 | None:intergenic | 35.0% | |
| TCCTATACATCCCAAATTTG+GGG | - | chr1.3:46501599-46501618 | None:intergenic | 35.0% | |
| TGGATGAAATCATGATTGCA+GGG | - | chr1.3:46500576-46500595 | None:intergenic | 35.0% | |
| TGGGATGAAAAGGAATAGAA+TGG | + | chr1.3:46501467-46501486 | MS.gene24597:intron | 35.0% | |
| TTCCTATGAATACAGAGTAG+CGG | + | chr1.3:46502800-46502819 | MS.gene24597:intron | 35.0% | |
| TTGGATGAAATCATGATTGC+AGG | - | chr1.3:46500577-46500596 | None:intergenic | 35.0% | |
| ! | AAAGCATCCATAGCATTTGA+TGG | - | chr1.3:46502292-46502311 | None:intergenic | 35.0% |
| ! | AGTCTAAAGTGGGATTTAGT+TGG | - | chr1.3:46500644-46500663 | None:intergenic | 35.0% |
| ! | AGTTCAAAGCTAGTCTAAAG+TGG | - | chr1.3:46500655-46500674 | None:intergenic | 35.0% |
| ! | CAAATTTGGGATGTATAGGA+TGG | + | chr1.3:46501599-46501618 | MS.gene24597:intron | 35.0% |
| ! | CATTTTGCTTCCCCAAATTT+GGG | + | chr1.3:46501586-46501605 | MS.gene24597:intron | 35.0% |
| ! | CGAGTTTCAAAAGAAAGTGT+CGG | + | chr1.3:46502689-46502708 | MS.gene24597:CDS | 35.0% |
| ! | GTTCAAAGCTAGTCTAAAGT+GGG | - | chr1.3:46500654-46500673 | None:intergenic | 35.0% |
| ! | TCATTTTGCTTCCCCAAATT+TGG | + | chr1.3:46501585-46501604 | MS.gene24597:intron | 35.0% |
| !! | TAGACTAGCTTTGAACTTCT+AGG | + | chr1.3:46500658-46500677 | MS.gene24597:intron | 35.0% |
| !!! | CGACACTTTCTTTTGAAACT+CGG | - | chr1.3:46502691-46502710 | None:intergenic | 35.0% |
| !!! | GAAGTGGATTTTGACTTATG+AGG | + | chr1.3:46501369-46501388 | MS.gene24597:intron | 35.0% |
| AAAAGGAGATTGCTGCATAC+CGG | + | chr1.3:46502652-46502671 | MS.gene24597:CDS | 40.0% | |
| AATCCATCACCTGAAAACAG+AGG | + | chr1.3:46502871-46502890 | MS.gene24597:CDS | 40.0% | |
| ACAGAGGAAGAATGCAAGAT+AGG | - | chr1.3:46501803-46501822 | None:intergenic | 40.0% | |
| AGACTACTTGGGAGAACTTA+TGG | + | chr1.3:46500788-46500807 | MS.gene24597:intron | 40.0% | |
| AGTGTTCGCTAAAATGTGCA+TGG | - | chr1.3:46502545-46502564 | None:intergenic | 40.0% | |
| ATTTGCAGCGAAGCTAAATG+AGG | + | chr1.3:46501324-46501343 | MS.gene24597:intron | 40.0% | |
| CAATCACGTATAAACGCATG+AGG | - | chr1.3:46502517-46502536 | None:intergenic | 40.0% | |
| CAATCTTGTGTTCTTCCTCT+CGG | + | chr1.3:46501676-46501695 | MS.gene24597:intron | 40.0% | |
| CACTACTAGAAAAATCGGCT+AGG | + | chr1.3:46502604-46502623 | MS.gene24597:intron | 40.0% | |
| CTCTGTTCCATCAAATGGTA+TGG | + | chr1.3:46502201-46502220 | MS.gene24597:intron | 40.0% | |
| CTTTATACTTGAGGCCTGTT+TGG | + | chr1.3:46500943-46500962 | MS.gene24597:intron | 40.0% | |
| GTCACAAGTGTTTATGCCAA+TGG | - | chr1.3:46500996-46501015 | None:intergenic | 40.0% | |
| GTTGAAACAAGCCAAAGAAG+AGG | + | chr1.3:46502626-46502645 | MS.gene24597:CDS | 40.0% | |
| TATCTTGCATTCTTCCTCTG+TGG | + | chr1.3:46501802-46501821 | MS.gene24597:intron | 40.0% | |
| TCTTGATGTGCAATGAGCAT+GGG | + | chr1.3:46502477-46502496 | MS.gene24597:intron | 40.0% | |
| TGAGCATATCTATTGGCCAT+TGG | + | chr1.3:46500977-46500996 | MS.gene24597:intron | 40.0% | |
| TGTTACATGCTTAAGGAGCA+TGG | - | chr1.3:46502924-46502943 | None:intergenic | 40.0% | |
| TTCTTGATGTGCAATGAGCA+TGG | + | chr1.3:46502476-46502495 | MS.gene24597:intron | 40.0% | |
| TTTGATGGAACATAGTAGGG+TGG | - | chr1.3:46502277-46502296 | None:intergenic | 40.0% | |
| TTTGCAGCGAAGCTAAATGA+GGG | + | chr1.3:46501325-46501344 | MS.gene24597:intron | 40.0% | |
| ! | AGAACACAAGATTGGTTGCA+TGG | - | chr1.3:46501670-46501689 | None:intergenic | 40.0% |
| ! | ATGGATGCTTTGTTGCATTC+TGG | + | chr1.3:46502336-46502355 | MS.gene24597:intron | 40.0% |
| ! | TCCCCAAATTTGGGATGTAT+AGG | + | chr1.3:46501595-46501614 | MS.gene24597:intron | 40.0% |
| ! | TGGAACATAGTGGGATGAAA+AGG | + | chr1.3:46501457-46501476 | MS.gene24597:intron | 40.0% |
| ! | TTCTATCAGCCTCTGTTTTC+AGG | - | chr1.3:46502883-46502902 | None:intergenic | 40.0% |
| !! | AGCTTTGAACTTCTAGGACT+AGG | + | chr1.3:46500664-46500683 | MS.gene24597:intron | 40.0% |
| !! | CTAGCCGATTTTTCTAGTAG+TGG | - | chr1.3:46502606-46502625 | None:intergenic | 40.0% |
| !! | TGGTTGCATGGTGGATAATA+AGG | - | chr1.3:46501658-46501677 | None:intergenic | 40.0% |
| !! | TTTGAACTTCTAGGACTAGG+AGG | + | chr1.3:46500667-46500686 | MS.gene24597:intron | 40.0% |
| AAAGGAGATTGCTGCATACC+GGG | + | chr1.3:46502653-46502672 | MS.gene24597:CDS | 45.0% | |
| AGCCAAAGAAGAGGCTGAAA+AGG | + | chr1.3:46502635-46502654 | MS.gene24597:CDS | 45.0% | |
| AGGAGGAATTCAGCAGTTGT+TGG | + | chr1.3:46500456-46500475 | MS.gene24597:CDS | 45.0% | |
| AGGGTGGAACTGAACATAGT+AGG | - | chr1.3:46502261-46502280 | None:intergenic | 45.0% | |
| ATACAGAGTAGCGGTGATTC+TGG | + | chr1.3:46502809-46502828 | MS.gene24597:intron | 45.0% | |
| CACCGCTACTCTGTATTCAT+AGG | - | chr1.3:46502805-46502824 | None:intergenic | 45.0% | |
| CATAGTAGGGTGGAACTGAA+CGG | - | chr1.3:46502247-46502266 | None:intergenic | 45.0% | |
| CCATTGTTGTAGAGCCAAAG+AGG | - | chr1.3:46501694-46501713 | None:intergenic | 45.0% | |
| CGAGAGGAAGAACACAAGAT+TGG | - | chr1.3:46501741-46501760 | None:intergenic | 45.0% | |
| CTCTGCTCTGTTCCATCAAA+TGG | + | chr1.3:46502196-46502215 | MS.gene24597:intron | 45.0% | |
| GATTGCAGGGCAAAGAACAT+TGG | - | chr1.3:46500563-46500582 | None:intergenic | 45.0% | |
| GGGTGGAACTGAACATAGTA+GGG | - | chr1.3:46502260-46502279 | None:intergenic | 45.0% | |
| TCCTCTCGGTTCTACAACAA+TGG | + | chr1.3:46501753-46501772 | MS.gene24597:intron | 45.0% | |
| TGGAACTGAACATAGTAGGG+TGG | - | chr1.3:46502257-46502276 | None:intergenic | 45.0% | |
| ! | ACACAAGATTGGTTGCATGG+TGG | - | chr1.3:46501667-46501686 | None:intergenic | 45.0% |
| ! | CAGCTGAACAAGAAGCACAA+CGG | + | chr1.3:46500479-46500498 | MS.gene24597:CDS | 45.0% |
| ! | CTCCTTTTCAGCCTCTTCTT+TGG | - | chr1.3:46502640-46502659 | None:intergenic | 45.0% |
| !! | CCTCTTTGGCTCTACAACAA+TGG | + | chr1.3:46501691-46501710 | MS.gene24597:intron | 45.0% |
| AATACAGCAGCCACTGAAGC+AGG | - | chr1.3:46501829-46501848 | None:intergenic | 50.0% | |
| AATTCCTCCTTGACCCCTGT+TGG | - | chr1.3:46500446-46500465 | None:intergenic | 50.0% | |
| AGGGCAAAGAACATTGGCAC+AGG | - | chr1.3:46500557-46500576 | None:intergenic | 50.0% | |
| ATACAGCAGCCACTGAAGCA+GGG | - | chr1.3:46501828-46501847 | None:intergenic | 50.0% | |
| ATGGCATCCACATCCAACAG+GGG | + | chr1.3:46500430-46500449 | MS.gene24597:CDS | 50.0% | |
| GCCATTGTTGTAGAACCGAG+AGG | - | chr1.3:46501757-46501776 | None:intergenic | 50.0% | |
| ! | AGGATTGGATTGGAACCTGG+TGG | + | chr1.3:46501531-46501550 | MS.gene24597:intron | 50.0% |
| ! | GGAAGGATTGGATTGGAACC+TGG | + | chr1.3:46501528-46501547 | MS.gene24597:intron | 50.0% |
| !!! | CAGCCTCTGTTTTCAGGTGA+TGG | - | chr1.3:46502877-46502896 | None:intergenic | 50.0% |
| ACATCCAACAGGGGTCAAGG+AGG | + | chr1.3:46500439-46500458 | MS.gene24597:CDS | 55.0% | |
| TCCACATCCAACAGGGGTCA+AGG | + | chr1.3:46500436-46500455 | MS.gene24597:CDS | 55.0% | |
| TCCTTGACCCCTGTTGGATG+TGG | - | chr1.3:46500440-46500459 | None:intergenic | 55.0% | |
| TGCATACCGGGCTAAGCTTG+AGG | + | chr1.3:46502665-46502684 | MS.gene24597:CDS | 55.0% | |
| ACTCGGCCTCAAGCTTAGCC+CGG | - | chr1.3:46502674-46502693 | None:intergenic | 60.0% | |
| CCACTGAAGCAGGGCCACAG+AGG | - | chr1.3:46501819-46501838 | None:intergenic | 65.0% | |
| CCTCTGTGGCCCTGCTTCAG+TGG | + | chr1.3:46501816-46501835 | MS.gene24597:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46500430 | 46502958 | 46500430 | ID=MS.gene24597 |
| chr1.3 | mRNA | 46500430 | 46502958 | 46500430 | ID=MS.gene24597.t1;Parent=MS.gene24597 |
| chr1.3 | exon | 46500430 | 46500523 | 46500430 | ID=MS.gene24597.t1.exon1;Parent=MS.gene24597.t1 |
| chr1.3 | CDS | 46500430 | 46500523 | 46500430 | ID=cds.MS.gene24597.t1;Parent=MS.gene24597.t1 |
| chr1.3 | exon | 46502613 | 46502713 | 46502613 | ID=MS.gene24597.t1.exon2;Parent=MS.gene24597.t1 |
| chr1.3 | CDS | 46502613 | 46502713 | 46502613 | ID=cds.MS.gene24597.t1;Parent=MS.gene24597.t1 |
| chr1.3 | exon | 46502815 | 46502958 | 46502815 | ID=MS.gene24597.t1.exon3;Parent=MS.gene24597.t1 |
| chr1.3 | CDS | 46502815 | 46502958 | 46502815 | ID=cds.MS.gene24597.t1;Parent=MS.gene24597.t1 |
| Gene Sequence |
| Protein sequence |
