AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03010.t1 MTR_1g088995 94.662 281 8 2 1 274 1 281 0.0 532
MS.gene03010.t1 MTR_1g088995 88.608 237 20 2 1 230 1 237 1.45e-140 395
MS.gene03010.t1 MTR_7g066690 37.184 277 146 6 16 274 7 273 1.07e-47 161
MS.gene03010.t1 MTR_7g066690 27.778 180 120 4 34 207 129 304 1.49e-12 67.0
MS.gene03010.t1 MTR_4g018750 34.155 284 152 6 10 274 4 271 4.26e-46 157
MS.gene03010.t1 MTR_1g090330 33.594 256 159 4 29 274 17 271 1.30e-45 155
MS.gene03010.t1 MTR_1g090330 27.551 196 130 4 17 201 102 296 1.03e-14 73.2
MS.gene03010.t1 MTR_3g100570 33.333 279 156 4 26 274 6 284 7.16e-44 151
MS.gene03010.t1 MTR_4g018750 33.333 273 147 6 10 263 4 260 2.99e-41 144
MS.gene03010.t1 MTR_3g462140 35.926 270 150 7 21 274 10 272 4.86e-40 141
MS.gene03010.t1 MTR_5g032420 30.208 288 162 6 26 274 6 293 5.77e-35 128
MS.gene03010.t1 MTR_8g068890 30.961 281 162 5 26 274 6 286 1.13e-32 122
MS.gene03010.t1 MTR_8g086070 29.389 262 160 8 26 274 21 270 1.07e-25 103
MS.gene03010.t1 MTR_4g057850 30.709 254 143 8 41 274 37 277 5.47e-22 93.6
MS.gene03010.t1 MTR_4g057850 30.814 172 93 6 30 183 121 284 1.17e-11 64.3
MS.gene03010.t1 MTR_1g097890 30.204 245 143 8 33 274 59 278 2.06e-19 86.3
MS.gene03010.t1 MTR_1g097890 29.670 182 120 3 25 204 131 306 1.67e-12 66.6
MS.gene03010.t1 MTR_2g436930 25.784 287 164 9 30 274 19 298 2.38e-18 83.6
MS.gene03010.t1 MTR_2g436930 27.933 179 103 5 117 274 10 183 1.74e-11 63.9
MS.gene03010.t1 MTR_8g086070 29.680 219 123 8 9 210 2 206 7.44e-18 80.1
MS.gene03010.t1 MTR_8g092080 28.016 257 158 7 21 274 47 279 1.40e-17 81.3
MS.gene03010.t1 MTR_7g109135 31.071 280 158 13 17 274 14 280 2.10e-17 80.9
MS.gene03010.t1 MTR_8g076760 27.451 255 160 10 41 274 29 279 3.66e-17 80.1
MS.gene03010.t1 MTR_7g084400 26.705 176 123 3 30 202 313 485 1.28e-16 79.7
MS.gene03010.t1 MTR_5g030530 27.734 256 159 8 39 274 21 270 1.59e-16 78.2
MS.gene03010.t1 MTR_5g030530 30.256 195 107 7 27 202 112 296 8.88e-12 64.7
MS.gene03010.t1 MTR_4g114320 29.670 182 117 4 27 204 222 396 1.60e-16 79.0
MS.gene03010.t1 MTR_4g114320 25.306 245 172 5 34 274 131 368 1.09e-11 64.7
MS.gene03010.t1 MTR_4g114320 30.380 158 102 3 119 274 120 271 1.30e-11 64.7
MS.gene03010.t1 MTR_1g095780 26.562 256 151 8 30 274 529 758 1.93e-16 79.3
MS.gene03010.t1 MTR_2g102010 26.592 267 175 7 20 274 11 268 2.22e-16 77.8
MS.gene03010.t1 MTR_3g107510 28.571 182 118 4 27 203 220 394 2.25e-16 78.6
MS.gene03010.t1 MTR_3g107510 25.610 246 170 7 34 274 130 367 1.43e-12 67.4
MS.gene03010.t1 MTR_4g119770 25.952 289 163 10 30 274 18 299 5.58e-16 77.0
MS.gene03010.t1 MTR_1g012030 29.412 204 129 6 5 203 218 411 5.78e-16 77.4
MS.gene03010.t1 MTR_1g012030 25.714 245 171 6 34 274 147 384 1.60e-13 70.5
MS.gene03010.t1 MTR_1g012030 27.848 158 105 3 119 274 136 286 7.41e-12 65.5
MS.gene03010.t1 MTR_7g068340 25.506 247 159 7 38 274 99 330 2.08e-14 72.8
MS.gene03010.t1 MTR_8g027975 27.749 191 115 4 35 202 163 353 2.53e-14 72.4
MS.gene03010.t1 MTR_8g027975 31.034 174 108 4 110 274 41 211 3.15e-14 72.0
MS.gene03010.t1 MTR_8g066975 27.165 254 163 7 39 274 21 270 2.89e-14 71.6
MS.gene03010.t1 MTR_5g055410 28.862 246 159 8 42 274 37 279 5.43e-14 71.2
MS.gene03010.t1 MTR_7g109135 29.710 276 160 13 17 274 14 273 5.80e-14 70.9
MS.gene03010.t1 MTR_4g012850 26.236 263 170 8 25 274 15 266 7.34e-14 70.5
MS.gene03010.t1 MTR_4g012850 28.659 164 105 4 42 196 126 286 5.02e-11 62.4
MS.gene03010.t1 MTR_8g096050 26.816 179 124 3 30 202 325 502 8.25e-14 71.2
MS.gene03010.t1 MTR_8g096050 26.848 257 175 8 25 274 226 476 8.73e-13 68.2
MS.gene03010.t1 MTR_3g098460 25.140 179 127 3 30 202 303 480 8.72e-14 71.2
MS.gene03010.t1 MTR_3g098460 25.292 257 179 6 25 274 204 454 3.68e-12 66.2
MS.gene03010.t1 MTR_5g009500 27.513 189 116 4 35 202 150 338 8.87e-14 70.9
MS.gene03010.t1 MTR_5g009500 29.630 162 104 3 122 274 38 198 2.04e-12 66.6
MS.gene03010.t1 MTR_2g032610 25.436 287 184 10 10 274 15 293 2.69e-13 69.3
MS.gene03010.t1 MTR_6g033280 25.431 232 143 7 24 234 57 279 2.95e-13 69.3
MS.gene03010.t1 MTR_5g073040 28.821 229 147 6 25 243 34 256 3.93e-13 68.6
MS.gene03010.t1 MTR_1g087840 29.839 248 154 8 42 274 35 277 4.79e-13 68.2
MS.gene03010.t1 MTR_3g025800 24.675 308 184 11 5 274 8 305 6.87e-13 68.2
MS.gene03010.t1 MTR_3g104600 27.228 202 109 5 32 202 135 329 7.53e-13 68.2
MS.gene03010.t1 MTR_3g104600 24.161 298 190 9 4 274 15 303 1.41e-11 64.3
MS.gene03010.t1 MTR_7g109135 31.100 209 123 8 80 274 1 202 3.59e-12 65.1
MS.gene03010.t1 MTR_7g109135 34.228 149 89 5 133 274 35 181 5.29e-12 64.3
MS.gene03010.t1 MTR_4g094578 24.390 246 152 8 23 244 22 257 5.53e-12 65.5
MS.gene03010.t1 MTR_8g099910 24.675 231 146 8 24 234 67 289 8.08e-12 65.1
MS.gene03010.t1 MTR_7g015870 25.521 192 109 2 36 204 136 316 1.30e-11 64.3
MS.gene03010.t1 MTR_4g119770 24.701 251 146 8 30 244 18 261 2.50e-11 62.8
MS.gene03010.t1 MTR_6g034515 26.244 221 139 8 41 251 82 288 2.67e-11 63.5
MS.gene03010.t1 MTR_6g015860 25.521 192 109 2 36 204 128 308 3.13e-11 63.2
MS.gene03010.t1 MTR_6g091800 23.715 253 162 7 16 243 2 248 3.80e-11 62.8
MS.gene03010.t1 MTR_6g091800 23.413 252 162 7 16 242 2 247 7.01e-11 61.6
MS.gene03010.t1 MTR_7g015870 25.397 189 107 2 36 201 132 309 7.81e-11 62.0
MS.gene03010.t1 MTR_4g088545 27.869 183 113 5 29 196 14 192 7.91e-11 61.6
MS.gene03010.t1 MTR_4g088545 27.869 183 113 5 29 196 14 192 7.96e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03010.t1 AT4G03115 69.118 272 79 2 3 274 17 283 2.31e-130 372
MS.gene03010.t1 AT4G03115 69.118 272 79 2 3 274 49 315 1.22e-129 372
MS.gene03010.t1 AT4G03115 72.197 223 59 1 52 274 1 220 2.43e-112 324
MS.gene03010.t1 AT4G03115 72.596 208 54 1 67 274 8 212 1.63e-105 306
MS.gene03010.t1 AT4G03115 69.444 216 61 2 3 218 17 227 5.42e-100 292
MS.gene03010.t1 AT4G03115 70.093 214 59 2 3 216 17 225 9.76e-100 291
MS.gene03010.t1 AT3G54110 34.351 262 154 5 26 274 15 271 2.22e-44 152
MS.gene03010.t1 AT5G58970 34.328 268 146 8 26 274 16 272 6.64e-41 143
MS.gene03010.t1 AT5G58970 28.090 178 122 3 31 204 125 300 5.09e-15 73.9
MS.gene03010.t1 AT4G24570 30.345 290 150 6 26 274 6 284 5.40e-37 133
MS.gene03010.t1 AT1G14140 30.888 259 163 4 29 274 19 274 3.19e-36 131
MS.gene03010.t1 AT1G14140 30.000 160 106 4 30 183 122 281 2.14e-14 72.4
MS.gene03010.t1 AT5G09470 29.870 308 156 6 23 274 3 306 3.14e-33 124
MS.gene03010.t1 AT5G58970 33.471 242 133 7 26 246 16 250 5.94e-33 122
MS.gene03010.t1 AT5G58970 27.500 160 104 3 127 274 21 180 4.94e-11 62.0
MS.gene03010.t1 AT2G22500 30.496 282 158 7 26 274 6 282 9.09e-30 114
MS.gene03010.t1 AT5G19760 29.213 267 164 8 21 274 13 267 3.01e-26 104
MS.gene03010.t1 AT5G01340 32.353 272 145 9 27 274 17 273 7.77e-24 98.6
MS.gene03010.t1 AT5G48970 27.526 287 160 10 31 274 27 308 1.12e-18 84.7
MS.gene03010.t1 AT5G48970 26.190 210 120 6 26 205 135 339 5.96e-11 62.4
MS.gene03010.t1 AT2G26360 27.451 255 152 8 30 274 119 350 2.28e-18 84.3
MS.gene03010.t1 AT1G07030 29.278 263 167 9 23 274 36 290 3.62e-18 83.2
MS.gene03010.t1 AT5G51050 30.114 176 118 2 30 202 322 495 4.92e-17 80.9
MS.gene03010.t1 AT5G51050 26.154 260 172 7 24 274 221 469 2.21e-12 67.0
MS.gene03010.t1 AT5G66380 27.341 267 173 9 27 274 10 274 1.10e-16 78.6
MS.gene03010.t1 AT5G66380 25.743 202 132 7 25 210 109 308 2.15e-11 63.5
MS.gene03010.t1 AT4G01100 26.131 199 121 4 27 202 99 294 5.48e-16 76.6
MS.gene03010.t1 AT3G21390 26.962 293 155 11 30 274 23 304 5.78e-16 77.0
MS.gene03010.t1 AT1G34065 25.283 265 155 7 21 274 70 302 6.85e-16 76.6
MS.gene03010.t1 AT1G34065 25.283 265 155 7 21 274 77 309 7.14e-16 77.0
MS.gene03010.t1 AT3G21390 26.962 293 155 11 30 274 45 326 7.96e-16 76.6
MS.gene03010.t1 AT4G01100 26.131 199 121 4 27 202 163 358 8.41e-16 76.6
MS.gene03010.t1 AT4G01100 26.131 199 121 4 27 202 149 344 9.26e-16 76.6
MS.gene03010.t1 AT4G01100 28.916 166 104 4 122 274 38 202 9.26e-11 62.0
MS.gene03010.t1 AT3G53940 26.568 271 176 8 25 274 66 334 9.94e-16 76.6
MS.gene03010.t1 AT3G53940 27.542 236 136 6 69 274 5 235 5.28e-13 68.6
MS.gene03010.t1 AT3G53940 25.000 188 125 4 25 202 179 360 4.81e-11 62.8
MS.gene03010.t1 AT4G39460 26.275 255 165 5 21 274 53 285 1.71e-15 75.5
MS.gene03010.t1 AT4G39460 26.275 255 165 5 21 274 53 285 1.71e-15 75.5
MS.gene03010.t1 AT4G39460 26.275 255 165 5 21 274 53 285 1.71e-15 75.5
MS.gene03010.t1 AT2G35800 25.781 256 154 8 30 274 549 779 2.11e-15 76.3
MS.gene03010.t1 AT2G37890 25.092 271 178 7 23 274 42 306 2.68e-15 75.1
MS.gene03010.t1 AT2G37890 25.510 196 127 5 25 210 151 337 9.09e-11 62.0
MS.gene03010.t1 AT5G61810 28.249 177 119 4 30 202 160 332 3.00e-15 75.1
MS.gene03010.t1 AT4G26180 23.346 257 167 6 9 244 4 251 4.90e-15 73.9
MS.gene03010.t1 AT5G61810 28.249 177 119 4 30 202 303 475 5.66e-15 74.7
MS.gene03010.t1 AT4G26180 23.346 257 167 6 9 244 4 251 9.00e-15 73.6
MS.gene03010.t1 AT1G79900 29.940 167 106 5 34 196 118 277 1.74e-14 72.4
MS.gene03010.t1 AT1G79900 26.230 244 153 8 41 274 31 257 6.03e-14 70.9
MS.gene03010.t1 AT1G25380 27.126 247 163 9 42 274 37 280 3.33e-14 72.0
MS.gene03010.t1 AT1G25380 27.126 247 163 9 42 274 37 280 3.33e-14 72.0
MS.gene03010.t1 AT4G32400 28.161 174 114 4 37 204 219 387 4.76e-14 72.0
MS.gene03010.t1 AT4G32400 25.101 247 170 8 34 274 122 359 1.03e-11 65.1
MS.gene03010.t1 AT2G30160 26.667 255 168 8 34 274 46 295 5.97e-14 71.2
MS.gene03010.t1 AT3G55640 26.038 265 169 9 30 274 42 299 7.27e-14 70.9
MS.gene03010.t1 AT3G55640 26.038 265 169 9 30 274 42 299 7.27e-14 70.9
MS.gene03010.t1 AT5G46800 28.462 260 155 9 39 274 21 273 8.42e-14 70.5
MS.gene03010.t1 AT5G46800 28.462 260 155 9 39 274 21 273 8.42e-14 70.5
MS.gene03010.t1 AT5G46800 28.462 260 155 9 39 274 21 273 8.42e-14 70.5
MS.gene03010.t1 AT5G07320 27.011 174 121 3 30 200 304 474 9.08e-14 71.2
MS.gene03010.t1 AT1G74240 25.862 290 167 10 22 274 32 310 9.33e-14 70.9
MS.gene03010.t1 AT2G47490 29.880 251 149 9 42 274 33 274 1.23e-13 70.1
MS.gene03010.t1 AT3G53940 27.542 236 136 6 69 274 5 235 2.05e-13 69.3
MS.gene03010.t1 AT5G01500 27.016 248 154 8 38 274 131 362 3.79e-13 69.3
MS.gene03010.t1 AT3G51870 26.016 246 159 7 38 274 103 334 6.33e-13 68.6
MS.gene03010.t1 AT5G48970 25.620 242 144 8 64 274 1 237 3.34e-12 65.5
MS.gene03010.t1 AT5G48970 26.190 210 120 6 26 205 64 268 2.99e-11 62.8
MS.gene03010.t1 AT2G39970 24.910 277 165 7 39 274 21 295 1.04e-11 64.7
MS.gene03010.t1 AT3G55640 28.571 168 102 5 121 274 37 200 1.29e-11 63.5
MS.gene03010.t1 AT3G55640 28.571 168 102 5 121 274 37 200 1.29e-11 63.5
MS.gene03010.t1 AT1G74240 26.199 271 152 10 41 274 3 262 1.56e-11 63.9
MS.gene03010.t1 AT5G14040 25.346 217 144 6 31 234 87 298 6.66e-11 62.4

Find 80 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGACCTAAGTCTTTATATC+TGG 0.241224 1.3:+62528831 MS.gene03010:CDS
TATCCATGGGAGCAGTTATA+AGG 0.254065 1.3:-62530261 None:intergenic
TGAACTACCATTCCACTTAA+AGG 0.259641 1.3:-62528695 None:intergenic
TTAACAAGGTCAGTTGTTTA+TGG 0.264230 1.3:+62528868 MS.gene03010:CDS
CATGCATGTGATCTTGCTTT+TGG 0.305682 1.3:+62528925 MS.gene03010:CDS
TTTGCAAATGAATTCAGATA+TGG 0.306923 1.3:+62529118 MS.gene03010:CDS
TATAACTGCTCCCATGGATA+TGG 0.337685 1.3:+62530264 MS.gene03010:CDS
GCTGGGAATTCCTCACTTCC+AGG 0.338797 1.3:+62527352 MS.gene03010:CDS
GCAGCGGCTCTGGCCATGGC+AGG 0.346797 1.3:-62529218 None:intergenic
TGCAGTCAAGGCAGCGGCTC+TGG 0.352494 1.3:-62529228 None:intergenic
CAGGAGATGAGAAGCAGAAT+TGG 0.368865 1.3:+62527485 MS.gene03010:intron
TACAGCTCAAGCACAGTTGC+AGG 0.372510 1.3:+62530226 MS.gene03010:intron
GGTCCAAGAGCACTTTATAA+AGG 0.396572 1.3:+62530680 MS.gene03010:CDS
CACCCTTTATAAAGTGCTCT+TGG 0.409133 1.3:-62530683 None:intergenic
ATTGCTTCGGGAATGTTTGC+TGG 0.424631 1.3:+62528970 MS.gene03010:CDS
CTTGAGAACTTCCATTGGAT+TGG 0.428326 1.3:-62529013 None:intergenic
GTCCTCCGGAGCTCTAAAAT+TGG 0.430225 1.3:-62529152 None:intergenic
TTTATATATTCTACCACCCT+TGG 0.448676 1.3:-62530317 None:intergenic
AAGATCACATGCATGCTTAG+AGG 0.450159 1.3:-62528917 None:intergenic
GGACCTAAGTCTTTATATCT+GGG 0.451211 1.3:+62528832 MS.gene03010:CDS
TTCAATCACTTTGCAACAAG+TGG 0.457233 1.3:+62527529 MS.gene03010:CDS
CTCACCTTGAGAACTTCCAT+TGG 0.467534 1.3:-62529018 None:intergenic
ATCCATGGGAGCAGTTATAA+GGG 0.468553 1.3:-62530260 None:intergenic
TTGCAAATGAATTCAGATAT+GGG 0.469855 1.3:+62529119 MS.gene03010:CDS
GAATCAAAGCTCTGTGGAAG+GGG 0.477216 1.3:+62529189 MS.gene03010:CDS
CAAGGCAGCGGCTCTGGCCA+TGG 0.478937 1.3:-62529222 None:intergenic
GTTTATGGAGGACTACGCTT+GGG 0.480206 1.3:+62528883 MS.gene03010:CDS
AGATAGAACAAAATCATGGC+TGG 0.481050 1.3:+62527334 None:intergenic
AGGAGATGAGAAGCAGAATT+GGG 0.486763 1.3:+62527486 MS.gene03010:intron
GTCCAAGAGCACTTTATAAA+GGG 0.488553 1.3:+62530681 MS.gene03010:CDS
GGTCAGAAGGGTCCTTTAAG+TGG 0.489706 1.3:+62528683 MS.gene03010:CDS
GAAAACAGTGGAAGGGGAGT+TGG 0.490931 1.3:-62527509 None:intergenic
TTATGCAGATTCTAGTCAAA+TGG 0.493713 1.3:+62529379 MS.gene03010:intron
CAGCGGCTCTGGCCATGGCA+GGG 0.506305 1.3:-62529217 None:intergenic
AAACCCAGATATAAAGACTT+AGG 0.506639 1.3:-62528835 None:intergenic
ACTTTAGAAATTGACCTGCT+TGG 0.513231 1.3:-62529276 None:intergenic
TGGATTTAACTGTGCATACC+AGG 0.515008 1.3:+62530342 MS.gene03010:CDS
AAATGGACATCTCTCAAAGA+AGG 0.520401 1.3:+62529396 MS.gene03010:CDS
AGGCTACAAATGCAACTTGT+TGG 0.521186 1.3:+62528662 MS.gene03010:CDS
GGAATCAAAGCTCTGTGGAA+GGG 0.524389 1.3:+62529188 MS.gene03010:CDS
CACCCTTATAACTGCTCCCA+TGG 0.525209 1.3:+62530258 MS.gene03010:CDS
TGCCTTGACTGCATCTCAGT+TGG 0.532941 1.3:+62529238 MS.gene03010:CDS
AGCCAACTGAGATGCAGTCA+AGG 0.539944 1.3:-62529240 None:intergenic
AGATCACATGCATGCTTAGA+GGG 0.540217 1.3:-62528916 None:intergenic
GAAGGGTCCTTTAAGTGGAA+TGG 0.541076 1.3:+62528688 MS.gene03010:CDS
GGGAATCAAAGCTCTGTGGA+AGG 0.543413 1.3:+62529187 MS.gene03010:CDS
TGTTTATGGAGGACTACGCT+TGG 0.543442 1.3:+62528882 MS.gene03010:CDS
GAGCAGTTATAAGGGTGCTC+AGG 0.543472 1.3:-62530252 None:intergenic
CATGTTGCAACGAGAATCCA+AGG 0.552643 1.3:+62530300 MS.gene03010:CDS
GTGATTGAAAACAGTGGAAG+GGG 0.553107 1.3:-62527515 None:intergenic
CAATCCAATGGAAGTTCTCA+AGG 0.555333 1.3:+62529014 MS.gene03010:CDS
ATGCAACTTGTTGGTCAGAA+GGG 0.561302 1.3:+62528671 MS.gene03010:CDS
CCTCTTCAGATATAGTCCTC+CGG 0.564864 1.3:-62529166 None:intergenic
AATGAATTCAGATATGGGAA+AGG 0.566621 1.3:+62529124 MS.gene03010:CDS
GATAGAACAAAATCATGGCT+GGG 0.570849 1.3:+62527335 None:intergenic
AAGTGATTGAAAACAGTGGA+AGG 0.571611 1.3:-62527517 None:intergenic
AATGCAACTTGTTGGTCAGA+AGG 0.572639 1.3:+62528670 MS.gene03010:CDS
TACTTATGATGAAACCAAGC+AGG 0.576672 1.3:+62529262 MS.gene03010:CDS
CCGGAGGACTATATCTGAAG+AGG 0.578111 1.3:+62529166 MS.gene03010:CDS
GTTTGACACCTGCTTTAACA+AGG 0.581556 1.3:+62528854 MS.gene03010:CDS
ACAACTGACCTTGTTAAAGC+AGG 0.582971 1.3:-62528862 None:intergenic
ATGAATTCAGATATGGGAAA+GGG 0.584092 1.3:+62529125 MS.gene03010:CDS
CTGAGATGCAGTCAAGGCAG+CGG 0.589986 1.3:-62529234 None:intergenic
TTTCAGGTCCTACTTACAGA+GGG 0.596108 1.3:+62530659 MS.gene03010:intron
ACAAGGTCAGTTGTTTATGG+AGG 0.600975 1.3:+62528871 MS.gene03010:CDS
AATTCAGATATGGGAAAGGG+TGG 0.601368 1.3:+62529128 MS.gene03010:CDS
ACATCAATTACTCACCCTCT+AGG 0.602482 1.3:+62527571 MS.gene03010:CDS
CTCTTGGACCCTCTGTAAGT+AGG 0.603008 1.3:-62530667 None:intergenic
CGGAGGACTATATCTGAAGA+GGG 0.606262 1.3:+62529167 MS.gene03010:CDS
AAAGTTGTAACCTGGAAGTG+AGG 0.612010 1.3:-62527362 None:intergenic
AATCAAAGCTCTGTGGAAGG+GGG 0.622362 1.3:+62529190 MS.gene03010:CDS
AACTGCATTCACCAATCCAA+TGG 0.630939 1.3:+62529002 MS.gene03010:CDS
AGTGATTGAAAACAGTGGAA+GGG 0.633104 1.3:-62527516 None:intergenic
GTGCAGATGTCTTGAAAGTG+AGG 0.638032 1.3:+62528642 MS.gene03010:intron
AAAACAAGAACGAACCTAGA+GGG 0.638593 1.3:-62527585 None:intergenic
GTTTCAGGTCCTACTTACAG+AGG 0.649161 1.3:+62530658 MS.gene03010:intron
AAGAGGGAATCAAAGCTCTG+TGG 0.664897 1.3:+62529183 MS.gene03010:CDS
TGCAAAGTGATTGAAAACAG+TGG 0.674194 1.3:-62527521 None:intergenic
TTGCAACGAGAATCCAAGGG+TGG 0.712682 1.3:+62530304 MS.gene03010:CDS
ATGTTGCAACGAGAATCCAA+GGG 0.732517 1.3:+62530301 MS.gene03010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTAATAAAATACAATAA+GGG + chr1.3:62529934-62529953 MS.gene03010:intron 10.0%
!!! TTTTCTAATAAAATACAATA+AGG + chr1.3:62529933-62529952 MS.gene03010:intron 10.0%
!!! TTTTTTAAAAAAAAAATACC+TGG - chr1.3:62528178-62528197 None:intergenic 10.0%
!! AAACAAATTTAGAAAAACAA+TGG - chr1.3:62529351-62529370 None:intergenic 15.0%
!! GTTTAATTGAAAGTAAATTA+GGG - chr1.3:62529329-62529348 None:intergenic 15.0%
!! TTGTATTATAATGTAGTAAT+AGG - chr1.3:62528751-62528770 None:intergenic 15.0%
!!! ATTTTATTCTTATTCTTTCT+GGG + chr1.3:62528399-62528418 MS.gene03010:intron 15.0%
!!! TATTTTATTCTTATTCTTTC+TGG + chr1.3:62528398-62528417 MS.gene03010:intron 15.0%
!! AGACAATAATGTATCTTTAA+TGG - chr1.3:62528289-62528308 None:intergenic 20.0%
!! AGTTAATTGAAAACAGAAAT+AGG + chr1.3:62527837-62527856 MS.gene03010:intron 20.0%
!! CAATTAACTGAAATTGTTTA+TGG - chr1.3:62527826-62527845 None:intergenic 20.0%
!! GGTTTAATTGAAAGTAAATT+AGG - chr1.3:62529330-62529349 None:intergenic 20.0%
!! TAAAGATGTTATCATTAAGT+TGG + chr1.3:62528502-62528521 MS.gene03010:intron 20.0%
!! TATACAAGTAAAAGATATGA+TGG - chr1.3:62529044-62529063 None:intergenic 20.0%
!! TCTTCTCAACATATTATTAA+AGG - chr1.3:62528545-62528564 None:intergenic 20.0%
!! TGAAAAATAATGAATGTATC+AGG + chr1.3:62527466-62527485 MS.gene03010:intron 20.0%
!! TTATAATGTAGTAATAGGTA+AGG - chr1.3:62528746-62528765 None:intergenic 20.0%
!!! AAAGAAGTATAGAACTTATA+TGG - chr1.3:62530477-62530496 None:intergenic 20.0%
!!! AGCAATTTTAACTAAAACAT+TGG - chr1.3:62528956-62528975 None:intergenic 20.0%
!!! ATATCATTGTTTTACATGAT+TGG - chr1.3:62530589-62530608 None:intergenic 20.0%
!!! GAGAAGAAACTATTTTATTT+GGG + chr1.3:62528558-62528577 MS.gene03010:intron 20.0%
!!! GTATTTTATTAGAAAACACA+AGG - chr1.3:62529929-62529948 None:intergenic 20.0%
!!! TATCATTGTTTTACATGATT+GGG - chr1.3:62530588-62530607 None:intergenic 20.0%
!!! TCTTAGTTATTAGCTTTTAA+TGG + chr1.3:62530535-62530554 MS.gene03010:intron 20.0%
!!! TGAGAAGAAACTATTTTATT+TGG + chr1.3:62528557-62528576 MS.gene03010:intron 20.0%
!!! TGTTTTAGTTAAAATTGCTT+CGG + chr1.3:62528957-62528976 MS.gene03010:CDS 20.0%
! ATAAGAACACAAATTCTTCA+CGG - chr1.3:62529886-62529905 None:intergenic 25.0%
! ATTACAATTACAACTTGTGA+TGG - chr1.3:62527430-62527449 None:intergenic 25.0%
! CTTCATTATTCTTCACTATA+TGG - chr1.3:62529550-62529569 None:intergenic 25.0%
! GCTAATAACTAAGAAGAATT+AGG - chr1.3:62530529-62530548 None:intergenic 25.0%
! GGTGGTAGAATATATAAAAA+TGG + chr1.3:62530322-62530341 MS.gene03010:CDS 25.0%
! TGAGAAAACAATTTAATACC+TGG - chr1.3:62530363-62530382 None:intergenic 25.0%
! TTATATGAAACAATGTCAAG+AGG + chr1.3:62529820-62529839 MS.gene03010:intron 25.0%
! TTGCAAATGAATTCAGATAT+GGG + chr1.3:62529119-62529138 MS.gene03010:CDS 25.0%
! TTTCATCTACATCTTATGTA+TGG + chr1.3:62529420-62529439 MS.gene03010:intron 25.0%
! TTTGCAAATGAATTCAGATA+TGG + chr1.3:62529118-62529137 MS.gene03010:CDS 25.0%
!! ATAGTTAGTTTGACATTAGT+TGG + chr1.3:62529761-62529780 MS.gene03010:intron 25.0%
!! CAATGATATATTTTCTGATC+TGG + chr1.3:62530600-62530619 MS.gene03010:intron 25.0%
!! GAAACAATGATTTTCAACAT+TGG + chr1.3:62529700-62529719 MS.gene03010:intron 25.0%
!! TACATTCTTTAACTTTGACT+AGG + chr1.3:62530499-62530518 MS.gene03010:intron 25.0%
!! TAGTTAGTTTGACATTAGTT+GGG + chr1.3:62529762-62529781 MS.gene03010:intron 25.0%
!!! GTTTTAGTTAAAATTGCTTC+GGG + chr1.3:62528958-62528977 MS.gene03010:CDS 25.0%
!!! TCTTTAATGGACTAATTTGA+TGG - chr1.3:62528276-62528295 None:intergenic 25.0%
AAACCCAGATATAAAGACTT+AGG - chr1.3:62528838-62528857 None:intergenic 30.0%
AAGTGTTAGACTATATCTAG+AGG + chr1.3:62527751-62527770 MS.gene03010:intron 30.0%
AATGAATTCAGATATGGGAA+AGG + chr1.3:62529124-62529143 MS.gene03010:CDS 30.0%
AATTCATTTGCCATCACTTT+AGG - chr1.3:62528333-62528352 None:intergenic 30.0%
ATACCAGACATCAATCAAAT+TGG - chr1.3:62527649-62527668 None:intergenic 30.0%
ATGAATTCAGATATGGGAAA+GGG + chr1.3:62529125-62529144 MS.gene03010:CDS 30.0%
CAAAGATTGACCAAAATCAT+GGG + chr1.3:62529513-62529532 MS.gene03010:intron 30.0%
CAATTCCAACTGTTACAATT+AGG - chr1.3:62529963-62529982 None:intergenic 30.0%
GATGATTTATTGATACATCG+AGG + chr1.3:62528357-62528376 MS.gene03010:intron 30.0%
GTGCTAACAATTTATGTGTT+AGG + chr1.3:62528088-62528107 MS.gene03010:intron 30.0%
TTAACAAGGTCAGTTGTTTA+TGG + chr1.3:62528868-62528887 MS.gene03010:CDS 30.0%
TTAAGTCACATCTCTGATAA+TGG - chr1.3:62530185-62530204 None:intergenic 30.0%
TTATGCAGATTCTAGTCAAA+TGG + chr1.3:62529379-62529398 MS.gene03010:intron 30.0%
TTTATATATTCTACCACCCT+TGG - chr1.3:62530320-62530339 None:intergenic 30.0%
! GTCAATTAAGCATTTTTCCA+GGG + chr1.3:62528778-62528797 MS.gene03010:intron 30.0%
! TGTCAATTAAGCATTTTTCC+AGG + chr1.3:62528777-62528796 MS.gene03010:intron 30.0%
! TTTAGAGTAAACCCTCAATT+GGG + chr1.3:62528206-62528225 MS.gene03010:intron 30.0%
!! ACATCTCTGATAATGGAAAA+TGG - chr1.3:62530178-62530197 None:intergenic 30.0%
!! CATGATTTTGGTCAATCTTT+GGG - chr1.3:62529514-62529533 None:intergenic 30.0%
!! GATCAGTTATTTGTTTCTGT+TGG - chr1.3:62527915-62527934 None:intergenic 30.0%
!!! CTCTGCTTCTTTATTTTAAG+TGG + chr1.3:62530422-62530441 MS.gene03010:intron 30.0%
AAAAACAAGAACGAACCTAG+AGG - chr1.3:62527589-62527608 None:intergenic 35.0%
AAAACAAGAACGAACCTAGA+GGG - chr1.3:62527588-62527607 None:intergenic 35.0%
AAATGGACATCTCTCAAAGA+AGG + chr1.3:62529396-62529415 MS.gene03010:CDS 35.0%
AAGTGATTGAAAACAGTGGA+AGG - chr1.3:62527520-62527539 None:intergenic 35.0%
ACACATAAATTGTTAGCACC+TGG - chr1.3:62528087-62528106 None:intergenic 35.0%
AGGACCTAAGTCTTTATATC+TGG + chr1.3:62528831-62528850 MS.gene03010:CDS 35.0%
AGTCTGCATTAAGAGAGATA+TGG - chr1.3:62529468-62529487 None:intergenic 35.0%
AGTGATTGAAAACAGTGGAA+GGG - chr1.3:62527519-62527538 None:intergenic 35.0%
ATCAAGTGCTTAACAGTTGA+TGG + chr1.3:62527948-62527967 MS.gene03010:intron 35.0%
CCAAAGATTGACCAAAATCA+TGG + chr1.3:62529512-62529531 MS.gene03010:intron 35.0%
CTAATGAATTCAGACTTGTG+TGG - chr1.3:62530130-62530149 None:intergenic 35.0%
CTATATCTAGAGGTTGGATT+TGG + chr1.3:62527761-62527780 MS.gene03010:intron 35.0%
CTTGTTGCAAATGCAAGATT+AGG + chr1.3:62530024-62530043 MS.gene03010:intron 35.0%
GAAGAAACAAAGTTGTAACC+TGG - chr1.3:62527373-62527392 None:intergenic 35.0%
GCAAAAATCAAGAACTGACA+CGG - chr1.3:62528254-62528273 None:intergenic 35.0%
GCAACACTTTGATCTTTAGA+GGG - chr1.3:62528232-62528251 None:intergenic 35.0%
GGAAACCTAATTGTAACAGT+TGG + chr1.3:62529955-62529974 MS.gene03010:intron 35.0%
GGACCTAAGTCTTTATATCT+GGG + chr1.3:62528832-62528851 MS.gene03010:CDS 35.0%
GTAATAGGTAAGGTCTAAAG+AGG - chr1.3:62528736-62528755 None:intergenic 35.0%
GTTAGACTATATCTAGAGGT+TGG + chr1.3:62527755-62527774 MS.gene03010:intron 35.0%
TACTTATGATGAAACCAAGC+AGG + chr1.3:62529262-62529281 MS.gene03010:CDS 35.0%
TGAACTACCATTCCACTTAA+AGG - chr1.3:62528698-62528717 None:intergenic 35.0%
TGACCAATTTGATTGATGTC+TGG + chr1.3:62527643-62527662 MS.gene03010:intron 35.0%
TGCAAAGTGATTGAAAACAG+TGG - chr1.3:62527524-62527543 None:intergenic 35.0%
TGTCTCCAAATTTGTCCTTA+TGG + chr1.3:62528304-62528323 MS.gene03010:intron 35.0%
TTAAGCGTGGTGAAAAATGA+AGG + chr1.3:62528811-62528830 MS.gene03010:CDS 35.0%
TTCAATCACTTTGCAACAAG+TGG + chr1.3:62527529-62527548 MS.gene03010:CDS 35.0%
TTGACATTAGTTGGGAACTT+GGG + chr1.3:62529770-62529789 MS.gene03010:intron 35.0%
TTTGACATTAGTTGGGAACT+TGG + chr1.3:62529769-62529788 MS.gene03010:intron 35.0%
! ACATCGAGGATAGATCTTTT+AGG + chr1.3:62528371-62528390 MS.gene03010:intron 35.0%
! ACTTTAGAAATTGACCTGCT+TGG - chr1.3:62529279-62529298 None:intergenic 35.0%
! ATCCATTTAGAATTCATGGC+AGG - chr1.3:62530057-62530076 None:intergenic 35.0%
! GATTGGTCCCAAAGATTAAT+CGG + chr1.3:62528137-62528156 MS.gene03010:intron 35.0%
! TCGGATCCATTTAGAATTCA+TGG - chr1.3:62530061-62530080 None:intergenic 35.0%
!! CCATGATTTTGGTCAATCTT+TGG - chr1.3:62529515-62529534 None:intergenic 35.0%
!! CTTTAGAGTAAACCCTCAAT+TGG + chr1.3:62528205-62528224 MS.gene03010:intron 35.0%
!! GTCCAAGAGCACTTTATAAA+GGG + chr1.3:62530681-62530700 MS.gene03010:CDS 35.0%
!! TAGAACAAACAAAGTACTGC+AGG - chr1.3:62530395-62530414 None:intergenic 35.0%
!!! ACGTGTTTTAACCATATCCA+TGG - chr1.3:62530278-62530297 None:intergenic 35.0%
!!! CGTGTTTTAACCATATCCAT+GGG - chr1.3:62530277-62530296 None:intergenic 35.0%
AAAACCATATTCCCGCAATC+AGG + chr1.3:62529091-62529110 MS.gene03010:intron 40.0%
AAAGTTGTAACCTGGAAGTG+AGG - chr1.3:62527365-62527384 None:intergenic 40.0%
AACTGCATTCACCAATCCAA+TGG + chr1.3:62529002-62529021 MS.gene03010:CDS 40.0%
AACTGTGCTTGAGCTGTATA+AGG - chr1.3:62530224-62530243 None:intergenic 40.0%
AAGATCACATGCATGCTTAG+AGG - chr1.3:62528920-62528939 None:intergenic 40.0%
AATTCAGATATGGGAAAGGG+TGG + chr1.3:62529128-62529147 MS.gene03010:CDS 40.0%
ACAACTGACCTTGTTAAAGC+AGG - chr1.3:62528865-62528884 None:intergenic 40.0%
ACAAGGTCAGTTGTTTATGG+AGG + chr1.3:62528871-62528890 MS.gene03010:CDS 40.0%
ACATCAATTACTCACCCTCT+AGG + chr1.3:62527571-62527590 MS.gene03010:CDS 40.0%
ACCAAGGACCGATTAATCTT+TGG - chr1.3:62528148-62528167 None:intergenic 40.0%
ACTGAGATAGTCTAAAGGCA+GGG + chr1.3:62529793-62529812 MS.gene03010:intron 40.0%
AGATCACATGCATGCTTAGA+GGG - chr1.3:62528919-62528938 None:intergenic 40.0%
AGCCTGCCATGAATTCTAAA+TGG + chr1.3:62530052-62530071 MS.gene03010:intron 40.0%
AGGAGATGAGAAGCAGAATT+GGG + chr1.3:62527486-62527505 MS.gene03010:intron 40.0%
AGGCTACAAATGCAACTTGT+TGG + chr1.3:62528662-62528681 MS.gene03010:CDS 40.0%
AGGTAAGGTCTAAAGAGGAA+AGG - chr1.3:62528731-62528750 None:intergenic 40.0%
ATCCATGGGAGCAGTTATAA+GGG - chr1.3:62530263-62530282 None:intergenic 40.0%
ATGTTGCAACGAGAATCCAA+GGG + chr1.3:62530301-62530320 MS.gene03010:CDS 40.0%
CAATCCAATGGAAGTTCTCA+AGG + chr1.3:62529014-62529033 MS.gene03010:CDS 40.0%
CCAAGGACCGATTAATCTTT+GGG - chr1.3:62528147-62528166 None:intergenic 40.0%
CCCTCAACTAATAGACCTAA+GGG - chr1.3:62529729-62529748 None:intergenic 40.0%
CCCTTAGGTCTATTAGTTGA+GGG + chr1.3:62529726-62529745 MS.gene03010:intron 40.0%
CCTCAACTAATAGACCTAAG+GGG - chr1.3:62529728-62529747 None:intergenic 40.0%
CGCTTAAAAACAATTGTCCC+TGG - chr1.3:62528798-62528817 None:intergenic 40.0%
CTCCAAATTTGTCCTTATGG+TGG + chr1.3:62528307-62528326 MS.gene03010:intron 40.0%
CTTGAGAACTTCCATTGGAT+TGG - chr1.3:62529016-62529035 None:intergenic 40.0%
GAAACAATGTCAAGAGGTGA+GGG + chr1.3:62529826-62529845 MS.gene03010:intron 40.0%
GAACATGAGACTTAGAGATG+AGG - chr1.3:62528057-62528076 None:intergenic 40.0%
GGCAACACTTTGATCTTTAG+AGG - chr1.3:62528233-62528252 None:intergenic 40.0%
GTCTCATGTTCAATTCTTCC+AGG + chr1.3:62528066-62528085 MS.gene03010:intron 40.0%
GTGATTGAAAACAGTGGAAG+GGG - chr1.3:62527518-62527537 None:intergenic 40.0%
GTTTGACACCTGCTTTAACA+AGG + chr1.3:62528854-62528873 MS.gene03010:CDS 40.0%
TAACAGTTGGAATTGTTGCC+AGG + chr1.3:62529968-62529987 MS.gene03010:intron 40.0%
TATAACTGCTCCCATGGATA+TGG + chr1.3:62530264-62530283 MS.gene03010:CDS 40.0%
TATCCATGGGAGCAGTTATA+AGG - chr1.3:62530264-62530283 None:intergenic 40.0%
TCACTTTCAAGACATCTGCA+CGG - chr1.3:62528643-62528662 None:intergenic 40.0%
TCCCTCAACTAATAGACCTA+AGG - chr1.3:62529730-62529749 None:intergenic 40.0%
TGAAACAATGTCAAGAGGTG+AGG + chr1.3:62529825-62529844 MS.gene03010:intron 40.0%
TGGATTTAACTGTGCATACC+AGG + chr1.3:62530342-62530361 MS.gene03010:CDS 40.0%
TTCTGTTGGATCTACGACTT+GGG - chr1.3:62527901-62527920 None:intergenic 40.0%
TTGGGACTGAGATAGTCTAA+AGG + chr1.3:62529788-62529807 MS.gene03010:intron 40.0%
TTTCTGTTGGATCTACGACT+TGG - chr1.3:62527902-62527921 None:intergenic 40.0%
! ATGTTGTTTGACTAGCACAG+AGG + chr1.3:62527866-62527885 MS.gene03010:intron 40.0%
! ATTTAGAATTCATGGCAGGC+TGG - chr1.3:62530053-62530072 None:intergenic 40.0%
! CACCCTTTATAAAGTGCTCT+TGG - chr1.3:62530686-62530705 None:intergenic 40.0%
! CATGCATGTGATCTTGCTTT+TGG + chr1.3:62528925-62528944 MS.gene03010:CDS 40.0%
! GAAGTTGTTGCCCATGATTT+TGG - chr1.3:62529526-62529545 None:intergenic 40.0%
! GGTGTGCTGATAGAAAACAT+AGG - chr1.3:62530109-62530128 None:intergenic 40.0%
! TCTAGAGGTTGGATTTGGTT+TGG + chr1.3:62527766-62527785 MS.gene03010:intron 40.0%
! TTTCAGGTCCTACTTACAGA+GGG + chr1.3:62530659-62530678 MS.gene03010:intron 40.0%
!! AATGCAACTTGTTGGTCAGA+AGG + chr1.3:62528670-62528689 MS.gene03010:CDS 40.0%
!! AGGTTGGATTTGGTTTGGAT+GGG + chr1.3:62527771-62527790 MS.gene03010:intron 40.0%
!! ATGCAACTTGTTGGTCAGAA+GGG + chr1.3:62528671-62528690 MS.gene03010:CDS 40.0%
!! GGTCCAAGAGCACTTTATAA+AGG + chr1.3:62530680-62530699 MS.gene03010:CDS 40.0%
!! TTAAGAGCATTTGTCGTGTG+TGG + chr1.3:62530632-62530651 MS.gene03010:intron 40.0%
!!! GGGACAATTGTTTTTAAGCG+TGG + chr1.3:62528798-62528817 MS.gene03010:intron 40.0%
AAGAGGGAATCAAAGCTCTG+TGG + chr1.3:62529183-62529202 MS.gene03010:CDS 45.0%
AATACCTGGTATCCAGACCA+AGG - chr1.3:62528164-62528183 None:intergenic 45.0%
AATCAAAGCTCTGTGGAAGG+GGG + chr1.3:62529190-62529209 MS.gene03010:CDS 45.0%
ACCAATCCAACCGTACAGTA+CGG - chr1.3:62528124-62528143 None:intergenic 45.0%
AGATTAATCGGTCCTTGGTC+TGG + chr1.3:62528149-62528168 MS.gene03010:intron 45.0%
AGGTAATCCGATGCTGACAA+AGG - chr1.3:62530089-62530108 None:intergenic 45.0%
AGTACTACCATTACCCCCAA+GGG + chr1.3:62527992-62528011 MS.gene03010:intron 45.0%
ATCCGATGCTGACAAAGGAT+TGG - chr1.3:62530084-62530103 None:intergenic 45.0%
ATTGCTTCGGGAATGTTTGC+TGG + chr1.3:62528970-62528989 MS.gene03010:CDS 45.0%
CAGGAGATGAGAAGCAGAAT+TGG + chr1.3:62527485-62527504 MS.gene03010:intron 45.0%
CATCACTTTAGGCCACCATA+AGG - chr1.3:62528322-62528341 None:intergenic 45.0%
CATGTTGCAACGAGAATCCA+AGG + chr1.3:62530300-62530319 MS.gene03010:CDS 45.0%
CCCAAAGATTAATCGGTCCT+TGG + chr1.3:62528144-62528163 MS.gene03010:intron 45.0%
CCCCTTAGGTCTATTAGTTG+AGG + chr1.3:62529725-62529744 MS.gene03010:intron 45.0%
CCTCTTCAGATATAGTCCTC+CGG - chr1.3:62529169-62529188 None:intergenic 45.0%
CGGAGGACTATATCTGAAGA+GGG + chr1.3:62529167-62529186 MS.gene03010:CDS 45.0%
CTCACCTTGAGAACTTCCAT+TGG - chr1.3:62529021-62529040 None:intergenic 45.0%
CTTATGGTGGCCTAAAGTGA+TGG + chr1.3:62528320-62528339 MS.gene03010:intron 45.0%
GAAGGGTCCTTTAAGTGGAA+TGG + chr1.3:62528688-62528707 MS.gene03010:CDS 45.0%
GAATCAAAGCTCTGTGGAAG+GGG + chr1.3:62529189-62529208 MS.gene03010:CDS 45.0%
GACCAATCCTTTGTCAGCAT+CGG + chr1.3:62530079-62530098 MS.gene03010:intron 45.0%
GACTGAGATAGTCTAAAGGC+AGG + chr1.3:62529792-62529811 MS.gene03010:intron 45.0%
GACTTAGAGATGAGGACACT+TGG - chr1.3:62528049-62528068 None:intergenic 45.0%
GGAATCAAAGCTCTGTGGAA+GGG + chr1.3:62529188-62529207 MS.gene03010:CDS 45.0%
GGCCACCATAAGGACAAATT+TGG - chr1.3:62528312-62528331 None:intergenic 45.0%
GGTAGTCACACTTCACATGT+GGG + chr1.3:62528420-62528439 MS.gene03010:intron 45.0%
GTGCAGATGTCTTGAAAGTG+AGG + chr1.3:62528642-62528661 MS.gene03010:intron 45.0%
GTTTATGGAGGACTACGCTT+GGG + chr1.3:62528883-62528902 MS.gene03010:CDS 45.0%
TAGTACTACCATTACCCCCA+AGG + chr1.3:62527991-62528010 MS.gene03010:intron 45.0%
TGTTTATGGAGGACTACGCT+TGG + chr1.3:62528882-62528901 MS.gene03010:CDS 45.0%
TTAGAGATGAGGACACTTGG+AGG - chr1.3:62528046-62528065 None:intergenic 45.0%
TTTCAACATTGGCACCCCTT+AGG + chr1.3:62529711-62529730 MS.gene03010:intron 45.0%
TTTGCAAACGCACCTGATTG+CGG - chr1.3:62529106-62529125 None:intergenic 45.0%
! ATCTTTAGAGGGCCCAATTG+AGG - chr1.3:62528221-62528240 None:intergenic 45.0%
! GATGCTGACAAAGGATTGGT+CGG - chr1.3:62530080-62530099 None:intergenic 45.0%
! GTTTCAGGTCCTACTTACAG+AGG + chr1.3:62530658-62530677 MS.gene03010:intron 45.0%
! TCTTTAGAGGGCCCAATTGA+GGG - chr1.3:62528220-62528239 None:intergenic 45.0%
!! CAAAGTACTGCAGGTTTGAG+AGG - chr1.3:62530386-62530405 None:intergenic 45.0%
!! GAGGTTGGATTTGGTTTGGA+TGG + chr1.3:62527770-62527789 MS.gene03010:intron 45.0%
!! TGGATTTGGTTTGGATGGGA+GGG + chr1.3:62527775-62527794 MS.gene03010:intron 45.0%
!! TTGGATTTGGTTTGGATGGG+AGG + chr1.3:62527774-62527793 MS.gene03010:intron 45.0%
!!! GTGGACCAATTTTAGAGCTC+CGG + chr1.3:62529147-62529166 MS.gene03010:CDS 45.0%
!! AATATATATATATATAGTTA+GGG + chr1.3:62527669-62527688 MS.gene03010:intron 5.0%
!! TAATATATATATATATAGTT+AGG + chr1.3:62527668-62527687 MS.gene03010:intron 5.0%
!!! ATTAAATATAGATATTTTTA+AGG - chr1.3:62528607-62528626 None:intergenic 5.0%
AAACCAACCCTTGGGGGTAA+TGG - chr1.3:62528002-62528021 None:intergenic 50.0%
AGCCAACTGAGATGCAGTCA+AGG - chr1.3:62529243-62529262 None:intergenic 50.0%
CACATGTGGGCAGGGTAAAT+TGG + chr1.3:62528433-62528452 MS.gene03010:intron 50.0%
CACCCTTATAACTGCTCCCA+TGG + chr1.3:62530258-62530277 MS.gene03010:CDS 50.0%
CACGGTTACATTGACCTACC+TGG - chr1.3:62529868-62529887 None:intergenic 50.0%
CCGGAGGACTATATCTGAAG+AGG + chr1.3:62529166-62529185 MS.gene03010:CDS 50.0%
CTCTTGGACCCTCTGTAAGT+AGG - chr1.3:62530670-62530689 None:intergenic 50.0%
GAAAACAGTGGAAGGGGAGT+TGG - chr1.3:62527512-62527531 None:intergenic 50.0%
GAGCATTTGTCGTGTGTGGT+GGG + chr1.3:62530636-62530655 MS.gene03010:intron 50.0%
GGAATTGTTGCCAGGAGACT+AGG + chr1.3:62529976-62529995 MS.gene03010:intron 50.0%
GGGAATCAAAGCTCTGTGGA+AGG + chr1.3:62529187-62529206 MS.gene03010:CDS 50.0%
GGGTAGTCACACTTCACATG+TGG + chr1.3:62528419-62528438 MS.gene03010:intron 50.0%
GGTCAGAAGGGTCCTTTAAG+TGG + chr1.3:62528683-62528702 MS.gene03010:CDS 50.0%
GTCAAGAGGTGAGGGAAATC+CGG + chr1.3:62529834-62529853 MS.gene03010:intron 50.0%
TACAGCTCAAGCACAGTTGC+AGG + chr1.3:62530226-62530245 MS.gene03010:intron 50.0%
TCAAGAGGTGAGGGAAATCC+GGG + chr1.3:62529835-62529854 MS.gene03010:intron 50.0%
TCACACTTCACATGTGGGCA+GGG + chr1.3:62528425-62528444 MS.gene03010:intron 50.0%
TGCCTTGACTGCATCTCAGT+TGG + chr1.3:62529238-62529257 MS.gene03010:CDS 50.0%
TTGCAAACGCACCTGATTGC+GGG - chr1.3:62529105-62529124 None:intergenic 50.0%
TTGCAACGAGAATCCAAGGG+TGG + chr1.3:62530304-62530323 MS.gene03010:CDS 50.0%
! AGAGCATTTGTCGTGTGTGG+TGG + chr1.3:62530635-62530654 MS.gene03010:intron 50.0%
! GTTGGATCTACGACTTGGGA+GGG - chr1.3:62527897-62527916 None:intergenic 50.0%
! TGTTGGATCTACGACTTGGG+AGG - chr1.3:62527898-62527917 None:intergenic 50.0%
! TTGGATCTACGACTTGGGAG+GGG - chr1.3:62527896-62527915 None:intergenic 50.0%
!! ATTACCCCCAAGGGTTGGTT+TGG + chr1.3:62528001-62528020 MS.gene03010:intron 50.0%
!! GAGCAGTTATAAGGGTGCTC+AGG - chr1.3:62530255-62530274 None:intergenic 50.0%
!! GGATTTGGTTTGGATGGGAG+GGG + chr1.3:62527776-62527795 MS.gene03010:intron 50.0%
!! GGTTGGTTTGGTGGTGGTAT+AGG + chr1.3:62528013-62528032 MS.gene03010:intron 50.0%
!! GTCCTCCGGAGCTCTAAAAT+TGG - chr1.3:62529155-62529174 None:intergenic 50.0%
!!! GACCAATTTTAGAGCTCCGG+AGG + chr1.3:62529150-62529169 MS.gene03010:CDS 50.0%
AAAGCTCTGTGGAAGGGGGT+GGG + chr1.3:62529194-62529213 MS.gene03010:CDS 55.0%
ACCACCAAACCAACCCTTGG+GGG - chr1.3:62528008-62528027 None:intergenic 55.0%
ACCACCACCAAACCAACCCT+TGG - chr1.3:62528011-62528030 None:intergenic 55.0%
AGATCCGTGACCTAGTCTCC+TGG - chr1.3:62529989-62530008 None:intergenic 55.0%
CACCACCAAACCAACCCTTG+GGG - chr1.3:62528009-62528028 None:intergenic 55.0%
CCACCACCAAACCAACCCTT+GGG - chr1.3:62528010-62528029 None:intergenic 55.0%
CCAGTCCATGCCGTACTGTA+CGG + chr1.3:62528111-62528130 MS.gene03010:intron 55.0%
CGCACCTGATTGCGGGAATA+TGG - chr1.3:62529098-62529117 None:intergenic 55.0%
CTACCATTACCCCCAAGGGT+TGG + chr1.3:62527996-62528015 MS.gene03010:intron 55.0%
CTGAGATGCAGTCAAGGCAG+CGG - chr1.3:62529237-62529256 None:intergenic 55.0%
GCCGTACTGTACGGTTGGAT+TGG + chr1.3:62528120-62528139 MS.gene03010:intron 55.0%
GCTGGGAATTCCTCACTTCC+AGG + chr1.3:62527352-62527371 MS.gene03010:CDS 55.0%
GTCACACTTCACATGTGGGC+AGG + chr1.3:62528424-62528443 MS.gene03010:intron 55.0%
GTGAGGGAAATCCGGGTCTT+GGG + chr1.3:62529842-62529861 MS.gene03010:intron 55.0%
GTTGCCAGGAGACTAGGTCA+CGG + chr1.3:62529982-62530001 MS.gene03010:intron 55.0%
TCCAACCGTACAGTACGGCA+TGG - chr1.3:62528119-62528138 None:intergenic 55.0%
TCCATGCCGTACTGTACGGT+TGG + chr1.3:62528115-62528134 MS.gene03010:intron 55.0%
!! TGTCGTGTGTGGTGGGTTTC+AGG + chr1.3:62530643-62530662 MS.gene03010:intron 55.0%
!! TTGGTTTGGATGGGAGGGGA+AGG + chr1.3:62527780-62527799 MS.gene03010:intron 55.0%
CAAAGCTCTGTGGAAGGGGG+TGG + chr1.3:62529193-62529212 MS.gene03010:CDS 60.0%
CCGTACAGTACGGCATGGAC+TGG - chr1.3:62528114-62528133 None:intergenic 60.0%
CGGTCCTTGGTCTGGATACC+AGG + chr1.3:62528157-62528176 MS.gene03010:intron 60.0%
GGTGAGGGAAATCCGGGTCT+TGG + chr1.3:62529841-62529860 MS.gene03010:intron 60.0%
!! ACCCCCAAGGGTTGGTTTGG+TGG + chr1.3:62528004-62528023 MS.gene03010:intron 60.0%
!! CCCAAGGGTTGGTTTGGTGG+TGG + chr1.3:62528007-62528026 MS.gene03010:intron 60.0%
ATCCGGGTCTTGGGCCAGGT+AGG + chr1.3:62529851-62529870 MS.gene03010:intron 65.0%
GACCTACCTGGCCCAAGACC+CGG - chr1.3:62529856-62529875 None:intergenic 65.0%
GGAAATCCGGGTCTTGGGCC+AGG + chr1.3:62529847-62529866 MS.gene03010:intron 65.0%
TGCAGTCAAGGCAGCGGCTC+TGG - chr1.3:62529231-62529250 None:intergenic 65.0%
! CAAGGCAGCGGCTCTGGCCA+TGG - chr1.3:62529225-62529244 None:intergenic 70.0%
! CAGCGGCTCTGGCCATGGCA+GGG - chr1.3:62529220-62529239 None:intergenic 70.0%
GAAGGGGGTGGGCCCTGCCA+TGG + chr1.3:62529205-62529224 MS.gene03010:CDS 75.0%
! GCAGCGGCTCTGGCCATGGC+AGG - chr1.3:62529221-62529240 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62527349 62530706 62527349 ID=MS.gene03010
chr1.3 mRNA 62527349 62530706 62527349 ID=MS.gene03010.t1;Parent=MS.gene03010
chr1.3 exon 62527349 62527373 62527349 ID=MS.gene03010.t1.exon1;Parent=MS.gene03010.t1
chr1.3 CDS 62527349 62527373 62527349 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62527488 62527592 62527488 ID=MS.gene03010.t1.exon2;Parent=MS.gene03010.t1
chr1.3 CDS 62527488 62527592 62527488 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62528648 62528709 62528648 ID=MS.gene03010.t1.exon3;Parent=MS.gene03010.t1
chr1.3 CDS 62528648 62528709 62528648 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62528799 62529035 62528799 ID=MS.gene03010.t1.exon4;Parent=MS.gene03010.t1
chr1.3 CDS 62528799 62529035 62528799 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62529113 62529283 62529113 ID=MS.gene03010.t1.exon5;Parent=MS.gene03010.t1
chr1.3 CDS 62529113 62529283 62529113 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62529387 62529436 62529387 ID=MS.gene03010.t1.exon6;Parent=MS.gene03010.t1
chr1.3 CDS 62529387 62529436 62529387 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62530231 62530363 62530231 ID=MS.gene03010.t1.exon7;Parent=MS.gene03010.t1
chr1.3 CDS 62530231 62530363 62530231 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
chr1.3 exon 62530665 62530706 62530665 ID=MS.gene03010.t1.exon8;Parent=MS.gene03010.t1
chr1.3 CDS 62530665 62530706 62530665 ID=cds.MS.gene03010.t1;Parent=MS.gene03010.t1
Gene Sequence

>MS.gene03010

ATGGCTGGGAATTCCTCACTTCCAGGTTACAACTTTGTTTCTTCTATTTCTCTCTAACATGTTAACAATGCATTATCACCATCACAAGTTGTAATTGTAATATTATATTGATGAAGATGAAAAATAATGAATGTATCAGGAGATGAGAAGCAGAATTGGGCCAACTCCCCTTCCACTGTTTTCAATCACTTTGCAACAAGTGGACTTTCTGTCGCAGTTGCAACATCAATTACTCACCCTCTAGGTTCGTTCTTGTTTTTCTCTTTATAATAATAATATGAACGTGATATCAAATGACCAATTTGATTGATGTCTGGTATAATATATATATATATAGTTAGGGATATATTTTGAGACTCAATTCAATTGTACTGTACTATTCAATACTGCTACTCATTAACAAAGTGTTAGACTATATCTAGAGGTTGGATTTGGTTTGGATGGGAGGGGAAGGAAAAGAAACAATTTTGTTTACCATAAACAATTTCAGTTAATTGAAAACAGAAATAGGATGCAAATGTTGTTTGACTAGCACAGAGGCATTCCCCTCCCAAGTCGTAGATCCAACAGAAACAAATAACTGATCTAAATCATGAGCTATCAAGTGCTTAACAGTTGATGGAAAACAAATACAGTTACTACTAGTACTACCATTACCCCCAAGGGTTGGTTTGGTGGTGGTATAGGCTTGAGACCTCCAAGTGTCCTCATCTCTAAGTCTCATGTTCAATTCTTCCAGGTGCTAACAATTTATGTGTTAGGCCAGTCCATGCCGTACTGTACGGTTGGATTGGTCCCAAAGATTAATCGGTCCTTGGTCTGGATACCAGGTATTTTTTTTTTAAAAAAAGTAATACTTTAGAGTAAACCCTCAATTGGGCCCTCTAAAGATCAAAGTGTTGCCGTGTCAGTTCTTGATTTTTGCCATCAAATTAGTCCATTAAAGATACATTATTGTCTCCAAATTTGTCCTTATGGTGGCCTAAAGTGATGGCAAATGAATTCTGTGATGATTTATTGATACATCGAGGATAGATCTTTTAGGTAGTTATTTTATTCTTATTCTTTCTGGGTAGTCACACTTCACATGTGGGCAGGGTAAATTGGAATTTTATTGAACTAACAGATCAAGTCAGCAGCTGTAGTAATTTAATAAAGATGTTATCATTAAGTTGGTGAAGTTCACATTGAGACCTTTAATAATATGTTGAGAAGAAACTATTTTATTTGGGTTTTGCAAAAGTAATTGACAAATCCTTAAAAATATCTATATTTAATTTGTTTCTACATTCCGTGCAGATGTCTTGAAAGTGAGGCTACAAATGCAACTTGTTGGTCAGAAGGGTCCTTTAAGTGGAATGGTAGTTCACTTAGTTCAACCTTTCCTCTTTAGACCTTACCTATTACTACATTATAATACAAAACTTTTGTCAATTAAGCATTTTTCCAGGGACAATTGTTTTTAAGCGTGGTGAAAAATGAAGGACCTAAGTCTTTATATCTGGGTTTGACACCTGCTTTAACAAGGTCAGTTGTTTATGGAGGACTACGCTTGGGTTTGTACGAACCCTCTAAGCATGCATGTGATCTTGCTTTTGGTTCTTCCAATGTTTTAGTTAAAATTGCTTCGGGAATGTTTGCTGGTGCTTTTGCAACTGCATTCACCAATCCAATGGAAGTTCTCAAGGTGAGCCATCATATCTTTTACTTGTATATTAAACAATTTTTTTTGTTTCATCTTCAAAACCATATTCCCGCAATCAGGTGCGTTTGCAAATGAATTCAGATATGGGAAAGGGTGGACCAATTTTAGAGCTCCGGAGGACTATATCTGAAGAGGGAATCAAAGCTCTGTGGAAGGGGGTGGGCCCTGCCATGGCCAGAGCCGCTGCCTTGACTGCATCTCAGTTGGCTACTTATGATGAAACCAAGCAGGTCAATTTCTAAAGTGTATTTTTGTTCATCTATTCGTCATCTCCCTAATTTACTTTCAATTAAACCATTGTTTTTCTAAATTTGTTTTGCTTTGCTTATGCAGATTCTAGTCAAATGGACATCTCTCAAAGAAGGATTTCATCTACATCTTATGTATGGCTCTCTCGTCATTTTTATTTCTCCATATCTCTCTTAATGCAGACTGAACTAATGAAGCATCATTAGAGCCCAAAGATTGACCAAAATCATGGGCAACAACTTCACCATATAGTGAAGAATAATGAAGATTGACATATCTTGAAAAATGAAATTCGCATAACTAATGTTTGTTTTATAATTGTTTTTGCGTGCATAAAATATATTCAAACTGAAGTGCATATTTTCTTACAAAACTAGTTTTGTTTGTCTAATTAATTGAAACAATGATTTTCAACATTGGCACCCCTTAGGTCTATTAGTTGAGGGAGAGAAAGTTAGATAGTTAGTTTGACATTAGTTGGGAACTTGGGACTGAGATAGTCTAAAGGCAGGGATTGTTATATGAAACAATGTCAAGAGGTGAGGGAAATCCGGGTCTTGGGCCAGGTAGGTCAATGTAACCGTGAAGAATTTGTGTTCTTATCTGTAGTCAGCGAAATTCTTCCTTGTGTTTTCTAATAAAATACAATAAGGGAAACCTAATTGTAACAGTTGGAATTGTTGCCAGGAGACTAGGTCACGGATCTAAGTTGTGACATTAACTTGTTGCAAATGCAAGATTAGGCAGCCAGCCTGCCATGAATTCTAAATGGATCCGACCAATCCTTTGTCAGCATCGGATTACCTATGTTTTCTATCAGCACACCACACAAGTCTGAATTCATTAGAAGTATTACTATTTTGAAATCAAAACCATTTTCCATTATCAGAGATGTGACTTAACTGATTGTGTTATGTACCTTATACAGCTCAAGCACAGTTGCAGGCATCCTGAGCACCCTTATAACTGCTCCCATGGATATGGTTAAAACACGTCTCATGTTGCAACGAGAATCCAAGGGTGGTAGAATATATAAAAATGGATTTAACTGTGCATACCAGGTATTAAATTGTTTTCTCACCTCTCAAACCTGCAGTACTTTGTTTGTTCTATACTGATCTCTGCTTCTTTATTTTAAGTGGTTGACTTTAGTTCATTACTTTGTACTGTGCCATATAAGTTCTATACTTCTTTCATACATTCTTTAACTTTGACTAGGCTTTCCTAATTCTTCTTAGTTATTAGCTTTTAATGGAGTGATAACGAAATGACTTTCGTAAAACCCAATCATGTAAAACAATGATATATTTTCTGATCTGGATTCACTTATTAAGAGCATTTGTCGTGTGTGGTGGGTTTCAGGTCCTACTTACAGAGGGTCCAAGAGCACTTTATAAAGGGTGA
Protein sequence

>MS.gene03010.t1

MAGNSSLPGDEKQNWANSPSTVFNHFATSGLSVAVATSITHPLDVLKVRLQMQLVGQKGPLSGMGQLFLSVVKNEGPKSLYLGLTPALTRSVVYGGLRLGLYEPSKHACDLAFGSSNVLVKIASGMFAGAFATAFTNPMEVLKVRLQMNSDMGKGGPILELRRTISEEGIKALWKGVGPAMARAAALTASQLATYDETKQILVKWTSLKEGFHLHLISSTVAGILSTLITAPMDMVKTRLMLQRESKGGRIYKNGFNCAYQVLLTEGPRALYKG