AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21371

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21371.t1 MTR_1g090330 96.066 305 9 1 23 327 1 302 0.0 602
MS.gene21371.t1 MTR_4g018750 36.806 288 167 5 42 322 18 297 1.04e-58 191
MS.gene21371.t1 MTR_4g018750 29.048 210 134 4 19 222 96 296 4.52e-15 75.1
MS.gene21371.t1 MTR_7g066690 35.889 287 169 4 42 321 20 298 3.61e-58 190
MS.gene21371.t1 MTR_7g066690 26.768 198 141 3 127 320 8 205 1.32e-16 79.3
MS.gene21371.t1 MTR_7g066690 28.638 213 137 4 19 225 98 301 5.59e-15 74.7
MS.gene21371.t1 MTR_3g100570 34.884 301 171 5 44 321 11 309 3.03e-54 180
MS.gene21371.t1 MTR_3g100570 26.087 207 123 4 139 321 9 209 1.12e-11 65.1
MS.gene21371.t1 MTR_3g462140 34.228 298 162 5 40 320 16 296 4.16e-52 174
MS.gene21371.t1 MTR_5g032420 31.715 309 179 3 44 321 11 318 3.33e-50 170
MS.gene21371.t1 MTR_1g088995 32.404 287 183 4 42 327 36 312 2.57e-49 167
MS.gene21371.t1 MTR_1g088995 30.814 172 107 4 129 299 26 186 1.01e-14 73.9
MS.gene21371.t1 MTR_8g068890 32.119 302 180 4 44 321 11 311 9.34e-49 166
MS.gene21371.t1 MTR_4g018750 36.508 252 145 5 42 286 18 261 7.58e-46 157
MS.gene21371.t1 MTR_4g018750 28.962 183 126 3 142 320 21 203 8.79e-18 82.4
MS.gene21371.t1 MTR_8g086070 33.688 282 169 6 45 321 27 295 3.77e-40 143
MS.gene21371.t1 MTR_4g057850 30.142 282 185 6 36 312 19 293 4.13e-28 111
MS.gene21371.t1 MTR_4g057850 29.648 199 124 6 124 318 12 198 9.06e-16 77.0
MS.gene21371.t1 MTR_8g086070 36.066 183 100 5 45 222 27 197 1.88e-26 104
MS.gene21371.t1 MTR_5g055410 28.309 272 186 6 55 321 37 304 1.31e-25 105
MS.gene21371.t1 MTR_1g088995 30.303 198 128 3 42 238 36 224 2.59e-25 102
MS.gene21371.t1 MTR_1g088995 30.814 172 107 4 129 299 26 186 3.77e-15 73.9
MS.gene21371.t1 MTR_8g066975 27.240 279 188 7 55 323 24 297 3.80e-24 100
MS.gene21371.t1 MTR_8g066975 28.643 199 133 5 133 323 4 201 1.26e-16 79.3
MS.gene21371.t1 MTR_5g030530 27.076 277 191 6 55 323 24 297 8.42e-23 96.7
MS.gene21371.t1 MTR_5g030530 27.895 190 128 5 139 321 11 198 1.17e-13 70.9
MS.gene21371.t1 MTR_1g087840 28.873 284 169 10 55 321 35 302 1.67e-22 95.9
MS.gene21371.t1 MTR_7g109135 25.723 311 213 9 23 321 1 305 4.54e-22 95.1
MS.gene21371.t1 MTR_4g012850 31.250 176 113 2 55 227 126 296 2.80e-21 92.4
MS.gene21371.t1 MTR_4g012850 25.292 257 171 6 54 303 31 273 5.64e-19 86.3
MS.gene21371.t1 MTR_4g119770 26.129 310 185 8 43 316 18 319 4.85e-21 92.4
MS.gene21371.t1 MTR_4g119770 23.697 211 139 5 130 322 4 210 1.25e-15 77.0
MS.gene21371.t1 MTR_2g436930 25.974 308 186 8 43 316 19 318 7.34e-21 91.7
MS.gene21371.t1 MTR_2g436930 25.641 195 129 4 139 321 18 208 3.91e-15 75.5
MS.gene21371.t1 MTR_7g084400 30.270 185 114 4 21 202 292 464 9.51e-21 92.8
MS.gene21371.t1 MTR_7g084400 25.694 288 181 8 44 320 218 483 1.01e-18 87.0
MS.gene21371.t1 MTR_1g097890 29.682 283 157 8 44 320 56 302 3.89e-20 89.4
MS.gene21371.t1 MTR_8g027975 28.866 194 118 5 27 201 139 331 9.31e-19 86.3
MS.gene21371.t1 MTR_8g027975 25.000 304 193 11 48 324 60 355 4.34e-15 75.5
MS.gene21371.t1 MTR_8g027975 25.758 198 133 4 131 321 46 236 2.50e-12 67.4
MS.gene21371.t1 MTR_7g064980 22.956 318 214 7 27 327 14 317 9.78e-19 85.5
MS.gene21371.t1 MTR_8g076760 25.347 288 189 10 55 325 30 308 1.82e-18 84.7
MS.gene21371.t1 MTR_2g102010 24.521 261 173 6 52 303 30 275 3.27e-18 84.0
MS.gene21371.t1 MTR_2g102010 29.412 170 110 3 55 219 126 290 5.16e-15 74.7
MS.gene21371.t1 MTR_7g109135 23.625 309 215 8 23 321 1 298 4.87e-18 83.6
MS.gene21371.t1 MTR_5g009500 30.366 191 114 5 29 201 127 316 1.10e-17 82.8
MS.gene21371.t1 MTR_5g009500 23.588 301 199 8 48 324 47 340 4.44e-15 75.5
MS.gene21371.t1 MTR_8g096050 25.532 282 192 7 44 320 232 500 5.27e-17 82.0
MS.gene21371.t1 MTR_8g096050 27.869 183 119 5 26 202 306 481 1.68e-16 80.5
MS.gene21371.t1 MTR_3g107510 23.948 309 208 9 23 320 99 391 1.56e-16 80.1
MS.gene21371.t1 MTR_7g109135 26.609 233 160 7 94 321 1 227 1.82e-16 77.8
MS.gene21371.t1 MTR_7g068340 21.505 279 193 6 53 325 101 359 5.32e-16 78.6
MS.gene21371.t1 MTR_4g119770 23.697 211 139 5 130 322 4 210 5.94e-16 77.0
MS.gene21371.t1 MTR_4g119770 27.126 247 143 7 43 260 18 256 2.35e-15 75.1
MS.gene21371.t1 MTR_3g098460 23.759 282 197 7 44 320 210 478 7.38e-16 78.6
MS.gene21371.t1 MTR_3g098460 28.409 176 101 5 38 202 298 459 9.74e-16 78.2
MS.gene21371.t1 MTR_1g012030 23.024 291 198 9 38 321 138 409 8.52e-16 78.2
MS.gene21371.t1 MTR_1g012030 25.862 174 118 3 53 224 247 411 1.20e-11 65.5
MS.gene21371.t1 MTR_5g081150 23.179 302 202 6 35 319 30 318 7.06e-15 74.7
MS.gene21371.t1 MTR_6g034515 25.090 279 172 9 55 319 83 338 1.54e-14 73.9
MS.gene21371.t1 MTR_6g034515 26.220 164 110 3 43 202 164 320 2.47e-12 67.4
MS.gene21371.t1 MTR_3g104600 22.186 311 205 10 38 324 34 331 2.01e-14 73.6
MS.gene21371.t1 MTR_4g078545 28.333 180 121 4 125 297 64 242 1.16e-13 71.2
MS.gene21371.t1 MTR_4g078545 22.180 266 195 5 39 296 75 336 1.15e-11 65.5
MS.gene21371.t1 MTR_7g109135 26.540 211 144 7 116 321 2 206 1.31e-13 69.3
MS.gene21371.t1 MTR_7g015870 23.453 307 178 11 54 327 36 318 1.39e-13 70.9
MS.gene21371.t1 MTR_8g098240 26.042 288 185 8 43 324 324 589 1.77e-13 71.6
MS.gene21371.t1 MTR_7g015870 22.408 299 178 10 54 322 40 314 2.50e-13 70.1
MS.gene21371.t1 MTR_3g028590 21.805 266 196 4 39 296 97 358 3.67e-13 70.1
MS.gene21371.t1 MTR_5g081910 22.917 288 164 10 53 297 22 294 4.24e-13 69.3
MS.gene21371.t1 MTR_3g028590 21.805 266 196 4 39 296 93 354 4.39e-13 69.7
MS.gene21371.t1 MTR_6g091800 21.262 301 207 9 38 321 18 305 1.14e-12 68.2
MS.gene21371.t1 MTR_6g091800 23.039 204 135 4 130 320 13 207 1.01e-11 65.1
MS.gene21371.t1 MTR_5g073040 23.711 291 190 8 43 321 43 313 1.49e-12 67.8
MS.gene21371.t1 MTR_8g092080 24.286 280 176 6 45 321 58 304 2.09e-12 67.4
MS.gene21371.t1 MTR_4g088545 21.843 293 210 5 44 324 17 302 2.51e-12 67.0
MS.gene21371.t1 MTR_6g091800 23.039 204 135 4 130 320 13 207 4.58e-12 65.9
MS.gene21371.t1 MTR_6g091800 23.039 204 135 4 130 320 13 207 5.68e-12 65.5
MS.gene21371.t1 MTR_2g436930 28.108 185 101 6 43 205 42 216 7.84e-12 64.7
MS.gene21371.t1 MTR_6g015860 21.769 294 186 11 54 322 32 306 1.16e-11 65.1
MS.gene21371.t1 MTR_3g025800 21.831 284 188 7 43 299 32 308 1.37e-11 65.1
MS.gene21371.t1 MTR_3g104500 20.132 303 224 7 33 324 28 323 1.53e-11 64.7
MS.gene21371.t1 MTR_8g099910 25.521 192 124 4 130 316 66 243 2.08e-11 64.7
MS.gene21371.t1 MTR_8g099910 24.912 285 177 10 55 326 89 349 3.52e-11 63.9
MS.gene21371.t1 MTR_1g036280 34.615 156 89 7 57 202 182 334 3.12e-11 63.9
MS.gene21371.t1 MTR_6g033280 25.269 186 121 3 136 317 63 234 5.28e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21371.t1 AT1G14140 72.483 298 73 4 35 327 12 305 9.16e-157 441
MS.gene21371.t1 AT5G58970 36.552 290 165 5 40 320 17 296 9.88e-59 191
MS.gene21371.t1 AT5G58970 29.688 192 120 4 19 204 97 279 2.54e-15 75.9
MS.gene21371.t1 AT4G24570 34.754 305 166 5 44 321 11 309 4.09e-57 187
MS.gene21371.t1 AT3G54110 34.495 287 173 5 42 321 18 296 2.94e-56 185
MS.gene21371.t1 AT3G54110 29.016 193 122 4 43 232 126 306 1.10e-15 76.6
MS.gene21371.t1 AT2G22500 33.893 298 176 4 44 321 11 307 2.25e-50 170
MS.gene21371.t1 AT4G03115 31.834 289 181 4 41 327 40 314 3.95e-47 161
MS.gene21371.t1 AT4G03115 31.834 289 181 4 41 327 72 346 1.17e-46 161
MS.gene21371.t1 AT5G09470 34.749 259 161 5 63 319 77 329 5.66e-45 156
MS.gene21371.t1 AT4G03115 32.422 256 159 3 72 327 2 243 1.74e-43 150
MS.gene21371.t1 AT4G03115 32.540 252 156 3 76 327 14 251 1.19e-42 148
MS.gene21371.t1 AT5G19760 31.900 279 178 4 45 321 24 292 1.44e-40 144
MS.gene21371.t1 AT5G58970 33.750 240 145 5 40 268 17 253 3.28e-37 134
MS.gene21371.t1 AT5G58970 26.596 188 134 3 137 320 17 204 1.82e-17 81.3
MS.gene21371.t1 AT5G01340 29.720 286 182 9 36 312 14 289 2.03e-27 109
MS.gene21371.t1 AT5G01340 28.351 194 123 6 129 318 12 193 1.09e-12 68.2
MS.gene21371.t1 AT1G25380 28.520 277 180 7 55 321 37 305 6.47e-27 109
MS.gene21371.t1 AT1G25380 28.520 277 180 7 55 321 37 305 6.47e-27 109
MS.gene21371.t1 AT2G47490 27.839 273 185 8 55 321 33 299 1.58e-24 101
MS.gene21371.t1 AT2G47490 25.439 228 153 6 7 224 81 301 5.40e-11 63.2
MS.gene21371.t1 AT5G46800 27.536 276 186 6 55 319 24 296 3.15e-23 97.8
MS.gene21371.t1 AT5G46800 26.562 192 131 3 139 321 11 201 2.43e-16 78.6
MS.gene21371.t1 AT5G46800 27.536 276 186 6 55 319 24 296 3.15e-23 97.8
MS.gene21371.t1 AT5G46800 26.562 192 131 3 139 321 11 201 2.43e-16 78.6
MS.gene21371.t1 AT5G46800 27.536 276 186 6 55 319 24 296 3.15e-23 97.8
MS.gene21371.t1 AT5G46800 26.562 192 131 3 139 321 11 201 2.43e-16 78.6
MS.gene21371.t1 AT4G03115 28.788 198 126 3 41 236 40 224 7.66e-23 95.1
MS.gene21371.t1 AT4G03115 28.108 185 118 4 138 321 40 210 9.09e-11 61.2
MS.gene21371.t1 AT4G03115 28.788 198 126 3 41 236 40 224 1.20e-22 94.7
MS.gene21371.t1 AT4G03115 28.108 185 118 4 138 321 40 210 7.83e-11 61.6
MS.gene21371.t1 AT1G79900 27.059 255 160 6 54 303 31 264 8.62e-20 88.2
MS.gene21371.t1 AT1G79900 30.769 182 109 3 55 233 126 293 1.22e-17 82.4
MS.gene21371.t1 AT3G53940 23.567 314 212 6 24 321 58 359 2.22e-19 88.2
MS.gene21371.t1 AT3G21390 25.333 225 149 5 113 322 13 233 9.50e-19 86.3
MS.gene21371.t1 AT3G21390 26.623 308 184 11 44 316 46 346 1.18e-15 77.4
MS.gene21371.t1 AT3G21390 25.824 182 113 3 43 205 156 334 9.75e-11 62.8
MS.gene21371.t1 AT4G01100 28.351 194 118 5 28 201 80 272 1.71e-18 84.7
MS.gene21371.t1 AT3G21390 25.118 211 140 4 126 322 5 211 2.19e-18 85.1
MS.gene21371.t1 AT3G21390 26.623 308 184 11 44 316 24 324 9.83e-16 77.4
MS.gene21371.t1 AT3G21390 25.824 182 113 3 43 205 134 312 9.81e-11 62.4
MS.gene21371.t1 AT4G01100 28.351 194 118 5 28 201 144 336 2.49e-18 85.1
MS.gene21371.t1 AT5G61810 29.670 182 103 5 30 201 144 310 2.95e-18 84.7
MS.gene21371.t1 AT5G61810 24.567 289 193 8 37 320 62 330 1.62e-17 82.4
MS.gene21371.t1 AT4G01100 28.351 194 118 5 28 201 130 322 3.13e-18 84.7
MS.gene21371.t1 AT5G07320 24.823 282 188 7 48 325 218 479 5.83e-18 84.7
MS.gene21371.t1 AT5G07320 27.624 181 114 5 26 202 288 455 5.25e-14 72.8
MS.gene21371.t1 AT5G61810 29.670 182 103 5 30 201 287 453 6.88e-18 84.7
MS.gene21371.t1 AT5G61810 24.407 295 198 8 36 325 204 478 6.62e-17 81.6
MS.gene21371.t1 AT5G48970 25.890 309 188 7 43 316 26 328 9.08e-18 83.2
MS.gene21371.t1 AT5G48970 26.263 198 130 4 136 321 22 215 8.63e-17 80.5
MS.gene21371.t1 AT2G37890 22.951 305 203 7 35 321 41 331 1.29e-17 82.8
MS.gene21371.t1 AT4G32400 24.828 290 192 8 38 320 113 383 2.77e-17 82.4
MS.gene21371.t1 AT4G32400 26.178 191 129 4 40 227 208 389 2.67e-12 67.4
MS.gene21371.t1 AT5G51050 31.073 177 97 6 35 202 314 474 5.76e-17 82.0
MS.gene21371.t1 AT5G51050 24.825 286 186 9 44 320 228 493 1.31e-15 77.8
MS.gene21371.t1 AT3G55640 23.377 308 205 7 37 326 36 330 1.18e-16 80.1
MS.gene21371.t1 AT3G55640 27.419 186 128 4 18 201 123 303 3.17e-11 63.9
MS.gene21371.t1 AT3G55640 23.377 308 205 7 37 326 36 330 1.18e-16 80.1
MS.gene21371.t1 AT3G55640 27.419 186 128 4 18 201 123 303 3.17e-11 63.9
MS.gene21371.t1 AT1G34065 25.172 290 179 7 36 321 72 327 1.22e-16 80.1
MS.gene21371.t1 AT1G34065 25.172 290 179 7 36 321 79 334 1.47e-16 79.7
MS.gene21371.t1 AT1G14560 23.759 282 195 6 55 321 43 319 2.35e-16 79.0
MS.gene21371.t1 AT1G14560 28.916 166 97 6 53 201 137 298 4.68e-12 66.2
MS.gene21371.t1 AT3G51870 20.495 283 199 5 50 326 102 364 2.15e-15 76.6
MS.gene21371.t1 AT1G14560 24.806 258 174 6 55 297 43 295 6.38e-15 74.7
MS.gene21371.t1 AT1G14560 28.916 166 97 6 53 201 137 298 2.72e-12 67.0
MS.gene21371.t1 AT4G39460 26.354 277 172 5 45 320 64 309 8.00e-15 74.7
MS.gene21371.t1 AT4G39460 26.354 277 172 5 45 320 64 309 8.00e-15 74.7
MS.gene21371.t1 AT4G39460 26.354 277 172 5 45 320 64 309 8.00e-15 74.7
MS.gene21371.t1 AT5G13490 24.055 291 199 8 17 296 71 350 1.04e-14 74.7
MS.gene21371.t1 AT5G13490 24.055 291 199 8 17 296 71 350 1.04e-14 74.7
MS.gene21371.t1 AT2G33820 22.635 296 204 7 44 324 23 308 1.23e-14 73.9
MS.gene21371.t1 AT2G33820 26.842 190 130 6 135 319 16 201 7.27e-12 65.9
MS.gene21371.t1 AT5G66380 25.347 288 178 11 56 321 27 299 1.82e-14 73.2
MS.gene21371.t1 AT5G42130 23.723 274 189 5 52 319 131 390 1.97e-14 73.9
MS.gene21371.t1 AT5G15640 23.411 299 181 10 54 324 43 321 1.41e-13 70.9
MS.gene21371.t1 AT1G07030 24.382 283 199 6 43 321 44 315 1.72e-13 70.5
MS.gene21371.t1 AT1G07030 26.178 191 126 5 137 327 41 216 4.25e-12 66.6
MS.gene21371.t1 AT5G15640 23.411 299 181 10 54 324 36 314 1.74e-13 70.5
MS.gene21371.t1 AT5G48970 25.681 257 161 6 84 316 7 257 5.80e-13 68.6
MS.gene21371.t1 AT4G11440 24.199 281 185 6 55 326 346 607 1.37e-12 68.9
MS.gene21371.t1 AT4G11440 26.667 165 104 5 45 202 428 582 6.94e-11 63.5
MS.gene21371.t1 AT4G11440 24.199 281 185 6 55 326 346 607 1.37e-12 68.9
MS.gene21371.t1 AT4G11440 26.667 165 104 5 45 202 428 582 6.94e-11 63.5
MS.gene21371.t1 AT4G26180 22.257 319 207 10 23 316 1 303 1.45e-12 67.8
MS.gene21371.t1 AT1G14560 28.916 166 97 6 53 201 39 200 1.52e-12 66.6
MS.gene21371.t1 AT4G28390 24.074 270 183 7 40 296 84 344 2.08e-12 67.8
MS.gene21371.t1 AT4G28390 27.976 168 113 4 137 297 84 250 1.10e-11 65.5
MS.gene21371.t1 AT4G28390 24.074 270 183 7 40 296 84 344 2.08e-12 67.8
MS.gene21371.t1 AT4G28390 27.976 168 113 4 137 297 84 250 1.10e-11 65.5
MS.gene21371.t1 AT4G26180 23.000 300 190 10 23 297 1 284 2.18e-12 67.0
MS.gene21371.t1 AT2G30160 25.123 203 139 3 118 320 24 213 2.48e-12 67.4
MS.gene21371.t1 AT2G30160 23.529 289 197 6 43 321 46 320 1.59e-11 64.7
MS.gene21371.t1 AT2G33820 22.039 304 204 8 44 324 23 316 2.50e-12 67.0
MS.gene21371.t1 AT3G55640 24.352 193 132 4 137 321 39 225 2.85e-12 66.2
MS.gene21371.t1 AT3G55640 24.352 193 132 4 137 321 39 225 2.85e-12 66.2
MS.gene21371.t1 AT5G01500 20.430 279 202 4 50 325 130 391 2.89e-12 67.4
MS.gene21371.t1 AT2G39970 20.652 276 187 5 53 297 22 296 5.95e-12 66.2
MS.gene21371.t1 AT3G53940 21.635 208 147 4 123 321 60 260 6.26e-12 65.5
MS.gene21371.t1 AT2G33820 26.842 190 130 6 135 319 16 201 6.74e-12 65.5
MS.gene21371.t1 AT5G17400 22.800 250 181 5 55 296 30 275 7.22e-12 65.5
MS.gene21371.t1 AT4G27940 22.054 331 193 8 38 306 64 391 1.01e-11 65.9
MS.gene21371.t1 AT5G14040 23.986 296 188 8 44 326 87 358 1.97e-11 64.7
MS.gene21371.t1 AT2G17270 25.338 296 180 12 44 326 27 294 4.28e-11 63.5
MS.gene21371.t1 AT3G08580 28.824 170 110 5 137 297 85 252 4.88e-11 63.5
MS.gene21371.t1 AT3G08580 28.824 170 110 5 137 297 85 252 4.88e-11 63.5

Find 101 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCATGGCAATTCGTGTTC+TGG 0.174612 1.4:-71595680 MS.gene21371:CDS
GGTCTTCAACCTCGGTATTC+AGG 0.223444 1.4:-71596086 MS.gene21371:CDS
AGGTCCTCTTGGCCTTTATA+AGG 0.237154 1.4:-71597382 MS.gene21371:CDS
TAAGAAGGCTCTTTGGATAT+TGG 0.264854 1.4:+71595995 None:intergenic
TGCTGGGCTCTCTTCTTTCT+AGG 0.268766 1.4:-71595631 None:intergenic
GATGAATCAGGCAGCTAAAA+AGG 0.273180 1.4:-71595811 MS.gene21371:CDS
AAGAAGGCTCTTTGGATATT+GGG 0.309974 1.4:+71595996 None:intergenic
TGTTCACTAAGAAGGCTCTT+TGG 0.330924 1.4:+71595988 None:intergenic
TCCATGGCAATTCGTGTTCT+GGG 0.358372 1.4:-71595679 MS.gene21371:CDS
TACACACCTATTCGAATTGT+TGG 0.378805 1.4:-71597327 MS.gene21371:CDS
GGTCCTCTTGGCCTTTATAA+GGG 0.385710 1.4:-71597381 MS.gene21371:CDS
GCTGTTGTTGGTGGAATCTC+TGG 0.388443 1.4:-71597243 MS.gene21371:CDS
CTCCCCATGGAGTTGGAGCC+TGG 0.389302 1.4:+71597467 None:intergenic
TTGTATGTACCAATGAAATC+AGG 0.391595 1.4:-71597594 MS.gene21371:CDS
TTCCCCACTTGGGCAAGGCT+TGG 0.394546 1.4:-71595702 MS.gene21371:CDS
AATAGGTGTCTAAGAATTGC+TGG 0.396481 1.4:+71597351 None:intergenic
TTGCTTAGCGTGATCATAAC+AGG 0.398629 1.4:+71595953 None:intergenic
ATCATTGGCAAGGCTGTTGT+TGG 0.402894 1.4:-71597255 MS.gene21371:CDS
CCAACCGGTGCATTTCGAAT+AGG 0.408519 1.4:-71597426 MS.gene21371:CDS
ATTAAAGCTGAAGGATTTCA+AGG 0.413857 1.4:-71596038 MS.gene21371:CDS
TGGTGGAATCTCTGGCAGTA+TGG 0.414492 1.4:-71597235 MS.gene21371:CDS
CTCTCATCAACTCGTCCAAC+CGG 0.418252 1.4:-71597441 MS.gene21371:CDS
GAGAAGTTTAGAAAATTTGC+TGG 0.430860 1.4:-71595648 MS.gene21371:CDS
CTGGAGACAAGCCCTTATAA+AGG 0.440102 1.4:+71597370 None:intergenic
AATGAAATCAGGCAATCAAC+AGG 0.442708 1.4:-71597583 MS.gene21371:CDS
AACAAAATCATTAAAGCTGA+AGG 0.442786 1.4:-71596047 MS.gene21371:CDS
GTCTTCAACCTCGGTATTCA+GGG 0.447119 1.4:-71596085 MS.gene21371:CDS
GTGAAGACAGTTAAAGTTGA+AGG 0.448258 1.4:-71595750 MS.gene21371:CDS
CAAGACTAGAATGATGAATC+AGG 0.448668 1.4:-71595823 MS.gene21371:CDS
AACAGCCTTGCCAATGATAG+AGG 0.453658 1.4:+71597260 None:intergenic
AGTGTTATTTCTGCTGAGAA+TGG 0.459621 1.4:-71597288 MS.gene21371:CDS
TGTTGATTGCCTGATTTCAT+TGG 0.460038 1.4:+71597585 None:intergenic
GGAAAGGATTCTTCCCCACT+TGG 0.461406 1.4:-71595713 MS.gene21371:CDS
TATAGGGAAAGTTGTGGATT+CGG 0.466865 1.4:+71597503 None:intergenic
AATGGGCCGCCCTCTATCAT+TGG 0.468039 1.4:-71597270 MS.gene21371:CDS
GTGTTATTTCTGCTGAGAAT+GGG 0.474578 1.4:-71597287 MS.gene21371:CDS
TAGAAGCTCTTATGATTGCT+TGG 0.474971 1.4:-71595772 MS.gene21371:CDS
AAATAAAATATGCACGGGGC+AGG 0.486275 1.4:+71597634 None:intergenic
TTCGAATAGGTGTGTAGAAT+AGG 0.489169 1.4:+71597334 None:intergenic
CGCCAAAATAAAATATGCAC+GGG 0.489172 1.4:+71597629 None:intergenic
GATAGTCAAATGATGAGAAA+AGG 0.489676 1.4:-71596107 MS.gene21371:CDS
ATTCGTGAACAAGGTCCTCT+TGG 0.491544 1.4:-71597393 MS.gene21371:CDS
TCATAGCCAACAATTCGAAT+AGG 0.494467 1.4:+71597321 None:intergenic
CTCACCTTGACAAGATCAGC+CGG 0.501511 1.4:+71596140 None:intergenic
AGAGTGACTCCCCATGGAGT+TGG 0.508604 1.4:+71597460 None:intergenic
CTAGTCTTGACAACGTCGGC+TGG 0.509654 1.4:+71595837 None:intergenic
TTGTTGGCTATGAGCACCTC+AGG 0.510758 1.4:-71597311 MS.gene21371:CDS
CTTGGGCAAGGCTTGGTCCA+TGG 0.510932 1.4:-71595695 MS.gene21371:CDS
AAGAGCCTTCTTAGTGAACA+TGG 0.517766 1.4:-71595985 MS.gene21371:CDS
GATTCTTCCCCACTTGGGCA+AGG 0.522216 1.4:-71595707 MS.gene21371:CDS
ACATTAGCTTCCATCATGTC+AGG 0.524522 1.4:-71595885 MS.gene21371:CDS
AAAACCAGGCTCCAACTCCA+TGG 0.535002 1.4:-71597471 MS.gene21371:CDS
AAACCAGGCTCCAACTCCAT+GGG 0.540270 1.4:-71597470 MS.gene21371:CDS
ATTGGCAAGGCTGTTGTTGG+TGG 0.541748 1.4:-71597252 MS.gene21371:CDS
AGAAGTTTAGAAAATTTGCT+GGG 0.542066 1.4:-71595647 MS.gene21371:CDS
TTCCATCATGTCAGGTCTTG+CGG 0.542079 1.4:-71595877 MS.gene21371:CDS
GGAATAAGAGCACTCTGGAA+AGG 0.543946 1.4:-71595729 MS.gene21371:CDS
AATCTCTGGCAGTATGGCTC+AGG 0.544027 1.4:-71597229 MS.gene21371:intron
AGTACAGGTTATAGCAAGCC+CGG 0.545462 1.4:-71596159 MS.gene21371:intron
TGCCGCAAGACCTGACATGA+TGG 0.548886 1.4:+71595875 None:intergenic
GCCGCCCTCTATCATTGGCA+AGG 0.561640 1.4:-71597265 MS.gene21371:CDS
AGGATTTCAAGGACTGTGGA+AGG 0.566008 1.4:-71596027 MS.gene21371:CDS
TCAACACTTTCAAATGGCTG+AGG 0.566643 1.4:-71597731 None:intergenic
ACTAACATCATTATCCGCAA+TGG 0.568719 1.4:-71597529 MS.gene21371:CDS
GAAAGGATTCTTCCCCACTT+GGG 0.582463 1.4:-71595712 MS.gene21371:CDS
GGACCAAGCCTTGCCCAAGT+GGG 0.583548 1.4:+71595699 None:intergenic
TGGACCAAGCCTTGCCCAAG+TGG 0.584390 1.4:+71595698 None:intergenic
ACCCAGAACACGAATTGCCA+TGG 0.585822 1.4:+71595678 None:intergenic
TTGAAGGAATAAGAGCACTC+TGG 0.590127 1.4:-71595734 MS.gene21371:CDS
CCTATTCGAAATGCACCGGT+TGG 0.591324 1.4:+71597426 None:intergenic
TCGCCAAAATAAAATATGCA+CGG 0.595417 1.4:+71597628 None:intergenic
CTATAGACTTGATCAAAACC+AGG 0.595808 1.4:-71597485 MS.gene21371:CDS
CGGCTGATCTTGTCAAGGTG+AGG 0.604258 1.4:-71596139 MS.gene21371:CDS
TCACCTTGACAAGATCAGCC+GGG 0.604841 1.4:+71596141 None:intergenic
TGAGAAAAGGTCTTCAACCT+CGG 0.606698 1.4:-71596094 MS.gene21371:CDS
TAAGCCTATTCGAAATGCAC+CGG 0.610923 1.4:+71597422 None:intergenic
AACATCATTATCCGCAATGG+TGG 0.612601 1.4:-71597526 MS.gene21371:CDS
GAGCCTTCTTAGTGAACATG+GGG 0.615946 1.4:-71595983 MS.gene21371:CDS
CTGAAGGATTTCAAGGACTG+TGG 0.616907 1.4:-71596031 MS.gene21371:CDS
AGAGCCTTCTTAGTGAACAT+GGG 0.617274 1.4:-71595984 MS.gene21371:CDS
GACCAAGCCTTGCCCAAGTG+GGG 0.621654 1.4:+71595700 None:intergenic
TTGATGAGAGTGACTCCCCA+TGG 0.622723 1.4:+71597454 None:intergenic
ACAGCCTTGCCAATGATAGA+GGG 0.630331 1.4:+71597261 None:intergenic
GGATTTCAAGGACTGTGGAA+GGG 0.631072 1.4:-71596026 MS.gene21371:CDS
TGTGGATTCGGCCACCATTG+CGG 0.632318 1.4:+71597515 None:intergenic
TTAGATATTATTCGTGAACA+AGG 0.632721 1.4:-71597402 MS.gene21371:CDS
GCCTTGCCAATGATAGAGGG+CGG 0.637339 1.4:+71597264 None:intergenic
ATGAAATCAGGCAATCAACA+GGG 0.642760 1.4:-71597582 MS.gene21371:CDS
TATTAAAAGTAAGATAGCTG+AGG 0.649871 1.4:-71595925 MS.gene21371:CDS
CAAGTCTATAGGGAAAGTTG+TGG 0.666682 1.4:+71597497 None:intergenic
AAGCCCGGCTGATCTTGTCA+AGG 0.681297 1.4:-71596144 MS.gene21371:CDS
CAGCAGAAATAACACTCCTG+AGG 0.681797 1.4:+71597295 None:intergenic
CATGATGGAAGCTAATGTGT+GGG 0.692601 1.4:+71595890 None:intergenic
AACCAGGCTCCAACTCCATG+GGG 0.699245 1.4:-71597469 MS.gene21371:CDS
AAATCAGGCAATCAACAGGG+TGG 0.703375 1.4:-71597579 MS.gene21371:CDS
AAGCCCTTATAAAGGCCAAG+AGG 0.705153 1.4:+71597378 None:intergenic
CATTCTAGTCTTGACAACGT+CGG 0.705215 1.4:+71595833 None:intergenic
ACATGATGGAAGCTAATGTG+TGG 0.716855 1.4:+71595889 None:intergenic
TCAAATGGCCCTGAATACCG+AGG 0.724190 1.4:+71596077 None:intergenic
GCCAAAATAAAATATGCACG+GGG 0.748461 1.4:+71597630 None:intergenic
AGCCTTCTTAGTGAACATGG+GGG 0.797499 1.4:-71595982 MS.gene21371:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAGATTATTATATATTTAA+AGG - chr1.4:71596288-71596307 MS.gene21371:intron 10.0%
!! GAAATAAAATATTAGAATTA+TGG - chr1.4:71596931-71596950 MS.gene21371:intron 10.0%
!!! ATTTTATGATTTTATCACAA+TGG + chr1.4:71597040-71597059 None:intergenic 15.0%
!!! ACTGTAACTTAACTATTTTT+TGG + chr1.4:71596347-71596366 None:intergenic 20.0%
!!! ATTTTGTTAAAAGCATCAAA+TGG + chr1.4:71597291-71597310 None:intergenic 20.0%
!!! GAAACTAAAATCCTTTAAAA+AGG - chr1.4:71596828-71596847 MS.gene21371:intron 20.0%
!!! GAATCAGAATTTTATAACAA+AGG + chr1.4:71596704-71596723 None:intergenic 20.0%
!!! TTTTACTATGTTCATAAATC+CGG + chr1.4:71596453-71596472 None:intergenic 20.0%
!!! TTTTCCAAAGACAAATATAA+AGG + chr1.4:71597136-71597155 None:intergenic 20.0%
! AACAAAATCATTAAAGCTGA+AGG - chr1.4:71597303-71597322 MS.gene21371:CDS 25.0%
! AACAATACAATGAATTGACA+AGG + chr1.4:71595683-71595702 None:intergenic 25.0%
! ATACTGAATCAATCAATCAA+TGG + chr1.4:71596514-71596533 None:intergenic 25.0%
! ATGTTTATCTTAGTTACTAG+TGG - chr1.4:71596571-71596590 MS.gene21371:intron 25.0%
! ATTGTTTGTCTAACATTTGT+GGG + chr1.4:71596781-71596800 None:intergenic 25.0%
! GAACATAGTAAAAGAATATG+TGG - chr1.4:71596460-71596479 MS.gene21371:intron 25.0%
! TATTAAAAGTAAGATAGCTG+AGG - chr1.4:71597425-71597444 MS.gene21371:CDS 25.0%
! TATTGTTTGTCTAACATTTG+TGG + chr1.4:71596782-71596801 None:intergenic 25.0%
! TGTTTATCTTAGTTACTAGT+GGG - chr1.4:71596572-71596591 MS.gene21371:intron 25.0%
! TTAGATATTATTCGTGAACA+AGG - chr1.4:71595948-71595967 MS.gene21371:CDS 25.0%
!! AAAATCCTTTAAAAAGGTGT+AGG - chr1.4:71596834-71596853 MS.gene21371:intron 25.0%
!! AAATTTTCTAAACTTCTCGT+AGG + chr1.4:71597700-71597719 None:intergenic 25.0%
!! AGAAGTTTAGAAAATTTGCT+GGG - chr1.4:71597703-71597722 MS.gene21371:intron 25.0%
!! TGATTGATTGATTCAGTATT+AGG - chr1.4:71596515-71596534 MS.gene21371:intron 25.0%
!! TTATTTACAATTAGGAGTAC+AGG - chr1.4:71597176-71597195 MS.gene21371:intron 25.0%
!!! ACTTAACTATTTTTTGGAAC+AGG + chr1.4:71596341-71596360 None:intergenic 25.0%
!!! ATATTTTATTTTGGCGAGTT+GGG - chr1.4:71595728-71595747 MS.gene21371:CDS 25.0%
!!! TTTTAGTTTCCTAAGTTCTT+TGG + chr1.4:71596818-71596837 None:intergenic 25.0%
ATTAAAGCTGAAGGATTTCA+AGG - chr1.4:71597312-71597331 MS.gene21371:CDS 30.0%
GAGAAGTTTAGAAAATTTGC+TGG - chr1.4:71597702-71597721 MS.gene21371:intron 30.0%
GATAGTCAAATGATGAGAAA+AGG - chr1.4:71597243-71597262 MS.gene21371:CDS 30.0%
GTTTAACTATTAGCATCTCA+TGG + chr1.4:71596982-71597001 None:intergenic 30.0%
GTTTATCTTAGTTACTAGTG+GGG - chr1.4:71596573-71596592 MS.gene21371:intron 30.0%
TCGCCAAAATAAAATATGCA+CGG + chr1.4:71595725-71595744 None:intergenic 30.0%
TTGTATGTACCAATGAAATC+AGG - chr1.4:71595756-71595775 MS.gene21371:CDS 30.0%
! ATCTTTGAAAATCTCATACC+TGG - chr1.4:71596890-71596909 MS.gene21371:intron 30.0%
!!! CATATTTTATTTTGGCGAGT+TGG - chr1.4:71595727-71595746 MS.gene21371:CDS 30.0%
!!! TGGTTTTGATCAAGTCTATA+GGG + chr1.4:71595866-71595885 None:intergenic 30.0%
AAGAAGGCTCTTTGGATATT+GGG + chr1.4:71597357-71597376 None:intergenic 35.0%
AATAGGTGTCTAAGAATTGC+TGG + chr1.4:71596002-71596021 None:intergenic 35.0%
AATGAAATCAGGCAATCAAC+AGG - chr1.4:71595767-71595786 MS.gene21371:CDS 35.0%
AATGAATTGACAAGGTACAC+AGG + chr1.4:71595675-71595694 None:intergenic 35.0%
ACTAACATCATTATCCGCAA+TGG - chr1.4:71595821-71595840 MS.gene21371:CDS 35.0%
ATGAAATCAGGCAATCAACA+GGG - chr1.4:71595768-71595787 MS.gene21371:CDS 35.0%
CAAGACTAGAATGATGAATC+AGG - chr1.4:71597527-71597546 MS.gene21371:CDS 35.0%
CAATCTCAACCAAAGAACTT+AGG - chr1.4:71596806-71596825 MS.gene21371:intron 35.0%
CGCACCTTTATATTTGTCTT+TGG - chr1.4:71597129-71597148 MS.gene21371:intron 35.0%
CGCCAAAATAAAATATGCAC+GGG + chr1.4:71595724-71595743 None:intergenic 35.0%
CTAAGTTCTTTGGTTGAGAT+TGG + chr1.4:71596808-71596827 None:intergenic 35.0%
CTATAGACTTGATCAAAACC+AGG - chr1.4:71595865-71595884 MS.gene21371:CDS 35.0%
GCCAAAATAAAATATGCACG+GGG + chr1.4:71595723-71595742 None:intergenic 35.0%
GGATAAAAGTTCCAAGATTC+AGG - chr1.4:71596309-71596328 MS.gene21371:intron 35.0%
GTGAAGACAGTTAAAGTTGA+AGG - chr1.4:71597600-71597619 MS.gene21371:CDS 35.0%
TAAGAAGGCTCTTTGGATAT+TGG + chr1.4:71597358-71597377 None:intergenic 35.0%
TACACACCTATTCGAATTGT+TGG - chr1.4:71596023-71596042 MS.gene21371:CDS 35.0%
TAGAAGCTCTTATGATTGCT+TGG - chr1.4:71597578-71597597 MS.gene21371:CDS 35.0%
TATAGGGAAAGTTGTGGATT+CGG + chr1.4:71595850-71595869 None:intergenic 35.0%
TCATAGCCAACAATTCGAAT+AGG + chr1.4:71596032-71596051 None:intergenic 35.0%
TTAGTAAAGCTTATGCCTGA+GGG + chr1.4:71596733-71596752 None:intergenic 35.0%
TTCGAATAGGTGTGTAGAAT+AGG + chr1.4:71596019-71596038 None:intergenic 35.0%
TTTCCAATGCACTGTAACTT+TGG - chr1.4:71597080-71597099 MS.gene21371:intron 35.0%
! TGTTGATTGCCTGATTTCAT+TGG + chr1.4:71595768-71595787 None:intergenic 35.0%
!! AGTGTTATTTCTGCTGAGAA+TGG - chr1.4:71596062-71596081 MS.gene21371:CDS 35.0%
!! GTGTTATTTCTGCTGAGAAT+GGG - chr1.4:71596063-71596082 MS.gene21371:CDS 35.0%
!!! CTGGTTTTGATCAAGTCTAT+AGG + chr1.4:71595867-71595886 None:intergenic 35.0%
AAATAAAATATGCACGGGGC+AGG + chr1.4:71595719-71595738 None:intergenic 40.0%
AACATCATTATCCGCAATGG+TGG - chr1.4:71595824-71595843 MS.gene21371:CDS 40.0%
AAGAGCCTTCTTAGTGAACA+TGG - chr1.4:71597365-71597384 MS.gene21371:CDS 40.0%
AATCAGGCAGCTAAAAAGGA+AGG - chr1.4:71597543-71597562 MS.gene21371:CDS 40.0%
AGAGCCTTCTTAGTGAACAT+GGG - chr1.4:71597366-71597385 MS.gene21371:CDS 40.0%
ATCAGGCAGCTAAAAAGGAA+GGG - chr1.4:71597544-71597563 MS.gene21371:CDS 40.0%
ATGTTCATAAATCCGGCAGA+TGG + chr1.4:71596446-71596465 None:intergenic 40.0%
CAAGTCTATAGGGAAAGTTG+TGG + chr1.4:71595856-71595875 None:intergenic 40.0%
CTTAGTAAAGCTTATGCCTG+AGG + chr1.4:71596734-71596753 None:intergenic 40.0%
GATGAATCAGGCAGCTAAAA+AGG - chr1.4:71597539-71597558 MS.gene21371:CDS 40.0%
GTTTGTCTAACATTTGTGGG+TGG + chr1.4:71596778-71596797 None:intergenic 40.0%
TAAGCCTATTCGAAATGCAC+CGG + chr1.4:71595931-71595950 None:intergenic 40.0%
TCTCCAAAGTTACAGTGCAT+TGG + chr1.4:71597086-71597105 None:intergenic 40.0%
TGAGAAAAGGTCTTCAACCT+CGG - chr1.4:71597256-71597275 MS.gene21371:CDS 40.0%
TGTTCACTAAGAAGGCTCTT+TGG + chr1.4:71597365-71597384 None:intergenic 40.0%
TTGCTTAGCGTGATCATAAC+AGG + chr1.4:71597400-71597419 None:intergenic 40.0%
! ACACGCCTACACCTTTTTAA+AGG + chr1.4:71596842-71596861 None:intergenic 40.0%
! ACATGATGGAAGCTAATGTG+TGG + chr1.4:71597464-71597483 None:intergenic 40.0%
! ACATTAGCTTCCATCATGTC+AGG - chr1.4:71597465-71597484 MS.gene21371:CDS 40.0%
! CATGATGGAAGCTAATGTGT+GGG + chr1.4:71597463-71597482 None:intergenic 40.0%
!! CAGATGGTGTTCTTTGAAGT+TGG + chr1.4:71596430-71596449 None:intergenic 40.0%
!! CATTCTAGTCTTGACAACGT+CGG + chr1.4:71597520-71597539 None:intergenic 40.0%
!! GCCCCGTGCATATTTTATTT+TGG - chr1.4:71595719-71595738 MS.gene21371:CDS 40.0%
!! TGGTGTTCTTTGAAGTTGGA+AGG + chr1.4:71596426-71596445 None:intergenic 40.0%
!! TTGAAGGAATAAGAGCACTC+TGG - chr1.4:71597616-71597635 MS.gene21371:CDS 40.0%
AAATCAGGCAATCAACAGGG+TGG - chr1.4:71595771-71595790 MS.gene21371:CDS 45.0%
AACAGCCTTGCCAATGATAG+AGG + chr1.4:71596093-71596112 None:intergenic 45.0%
AAGCCCTTATAAAGGCCAAG+AGG + chr1.4:71595975-71595994 None:intergenic 45.0%
ACAGCCTTGCCAATGATAGA+GGG + chr1.4:71596092-71596111 None:intergenic 45.0%
AGCCTTCTTAGTGAACATGG+GGG - chr1.4:71597368-71597387 MS.gene21371:CDS 45.0%
AGGATTTCAAGGACTGTGGA+AGG - chr1.4:71597323-71597342 MS.gene21371:CDS 45.0%
AGTACAGGTTATAGCAAGCC+CGG - chr1.4:71597191-71597210 MS.gene21371:intron 45.0%
ATACGACAGACTAACCGACT+AGG + chr1.4:71596603-71596622 None:intergenic 45.0%
ATCATTGGCAAGGCTGTTGT+TGG - chr1.4:71596095-71596114 MS.gene21371:CDS 45.0%
ATTCGTGAACAAGGTCCTCT+TGG - chr1.4:71595957-71595976 MS.gene21371:CDS 45.0%
CAGCAGAAATAACACTCCTG+AGG + chr1.4:71596058-71596077 None:intergenic 45.0%
CTGAAGGATTTCAAGGACTG+TGG - chr1.4:71597319-71597338 MS.gene21371:CDS 45.0%
CTGGAGACAAGCCCTTATAA+AGG + chr1.4:71595983-71596002 None:intergenic 45.0%
CTTCAAAGAACACCATCTGC+CGG - chr1.4:71596431-71596450 MS.gene21371:intron 45.0%
GAAAGGATTCTTCCCCACTT+GGG - chr1.4:71597638-71597657 MS.gene21371:CDS 45.0%
GAGCCTTCTTAGTGAACATG+GGG - chr1.4:71597367-71597386 MS.gene21371:CDS 45.0%
GGATTTCAAGGACTGTGGAA+GGG - chr1.4:71597324-71597343 MS.gene21371:CDS 45.0%
GTCTTCAACCTCGGTATTCA+GGG - chr1.4:71597265-71597284 MS.gene21371:CDS 45.0%
GTGCGCAGTCAGTTAAAACA+TGG + chr1.4:71597114-71597133 None:intergenic 45.0%
TCCATGGCAATTCGTGTTCT+GGG - chr1.4:71597671-71597690 MS.gene21371:intron 45.0%
TGGCTCAGGTGAGAATTACA+TGG - chr1.4:71596135-71596154 MS.gene21371:CDS 45.0%
TTCCATCATGTCAGGTCTTG+CGG - chr1.4:71597473-71597492 MS.gene21371:CDS 45.0%
TTCCCCCATGTTCACTAAGA+AGG + chr1.4:71597373-71597392 None:intergenic 45.0%
TTCTGATTCTACACTCCCTC+AGG - chr1.4:71596715-71596734 MS.gene21371:intron 45.0%
! AGGTCCTCTTGGCCTTTATA+AGG - chr1.4:71595968-71595987 MS.gene21371:CDS 45.0%
! GGTCCTCTTGGCCTTTATAA+GGG - chr1.4:71595969-71595988 MS.gene21371:CDS 45.0%
!! GGAATAAGAGCACTCTGGAA+AGG - chr1.4:71597621-71597640 MS.gene21371:CDS 45.0%
!!! ATTTTTTATTATTTACAATT+AGG - chr1.4:71597168-71597187 MS.gene21371:intron 5.0%
AAAACCAGGCTCCAACTCCA+TGG - chr1.4:71595879-71595898 MS.gene21371:CDS 50.0%
AAACCAGGCTCCAACTCCAT+GGG - chr1.4:71595880-71595899 MS.gene21371:CDS 50.0%
AATCTCTGGCAGTATGGCTC+AGG - chr1.4:71596121-71596140 MS.gene21371:CDS 50.0%
ACAAGGTACACAGGCATGAG+GGG + chr1.4:71595666-71595685 None:intergenic 50.0%
ACAGGCTCAAGCCTGAATCT+TGG + chr1.4:71596323-71596342 None:intergenic 50.0%
ACCCAGAACACGAATTGCCA+TGG + chr1.4:71597675-71597694 None:intergenic 50.0%
AGGCTGAATCACCTAGACCA+GGG + chr1.4:71596650-71596669 None:intergenic 50.0%
ATTGGCAAGGCTGTTGTTGG+TGG - chr1.4:71596098-71596117 MS.gene21371:CDS 50.0%
CCAACCGGTGCATTTCGAAT+AGG - chr1.4:71595924-71595943 MS.gene21371:CDS 50.0%
CGTGTGCAAAGCTCTCACAT+AGG + chr1.4:71596670-71596689 None:intergenic 50.0%
CTAGACCAGGGATCAAGACA+AGG + chr1.4:71596638-71596657 None:intergenic 50.0%
CTCACCTTGACAAGATCAGC+CGG + chr1.4:71597213-71597232 None:intergenic 50.0%
CTCTCATCAACTCGTCCAAC+CGG - chr1.4:71595909-71595928 MS.gene21371:CDS 50.0%
CTTGTCTTGATCCCTGGTCT+AGG - chr1.4:71596636-71596655 MS.gene21371:intron 50.0%
GACAAGGTACACAGGCATGA+GGG + chr1.4:71595667-71595686 None:intergenic 50.0%
GAGAGCTTTGCACACGTTTC+TGG - chr1.4:71596674-71596693 MS.gene21371:intron 50.0%
GGAAAGGATTCTTCCCCACT+TGG - chr1.4:71597637-71597656 MS.gene21371:CDS 50.0%
GGTCTTCAACCTCGGTATTC+AGG - chr1.4:71597264-71597283 MS.gene21371:CDS 50.0%
GTCCATGGCAATTCGTGTTC+TGG - chr1.4:71597670-71597689 MS.gene21371:intron 50.0%
GTGGGTGGCTAATTGCAACA+AGG + chr1.4:71596763-71596782 None:intergenic 50.0%
TAGGCTGAATCACCTAGACC+AGG + chr1.4:71596651-71596670 None:intergenic 50.0%
TCAAATGGCCCTGAATACCG+AGG + chr1.4:71597276-71597295 None:intergenic 50.0%
TCACCTTGACAAGATCAGCC+GGG + chr1.4:71597212-71597231 None:intergenic 50.0%
TCTCATACCTGGTCTCATGC+TGG - chr1.4:71596901-71596920 MS.gene21371:intron 50.0%
TGACAAGGTACACAGGCATG+AGG + chr1.4:71595668-71595687 None:intergenic 50.0%
TGGTGGAATCTCTGGCAGTA+TGG - chr1.4:71596115-71596134 MS.gene21371:CDS 50.0%
TTGATGAGAGTGACTCCCCA+TGG + chr1.4:71595899-71595918 None:intergenic 50.0%
! CCTATTCGAAATGCACCGGT+TGG + chr1.4:71595927-71595946 None:intergenic 50.0%
! GCTGTTGTTGGTGGAATCTC+TGG - chr1.4:71596107-71596126 MS.gene21371:CDS 50.0%
! TTGTTGGCTATGAGCACCTC+AGG - chr1.4:71596039-71596058 MS.gene21371:CDS 50.0%
!! ACTAGTGGGGTTAGCCTAGT+CGG - chr1.4:71596586-71596605 MS.gene21371:intron 50.0%
AACCAGGCTCCAACTCCATG+GGG - chr1.4:71595881-71595900 MS.gene21371:CDS 55.0%
AAGCCCGGCTGATCTTGTCA+AGG - chr1.4:71597206-71597225 MS.gene21371:intron 55.0%
AATGGGCCGCCCTCTATCAT+TGG - chr1.4:71596080-71596099 MS.gene21371:CDS 55.0%
AGAGTGACTCCCCATGGAGT+TGG + chr1.4:71595893-71595912 None:intergenic 55.0%
CGGCTGATCTTGTCAAGGTG+AGG - chr1.4:71597211-71597230 MS.gene21371:intron 55.0%
GATTCTTCCCCACTTGGGCA+AGG - chr1.4:71597643-71597662 MS.gene21371:intron 55.0%
GCCTTGCCAATGATAGAGGG+CGG + chr1.4:71596089-71596108 None:intergenic 55.0%
GTCTGCCTTGTCTTGATCCC+TGG - chr1.4:71596630-71596649 MS.gene21371:intron 55.0%
TACCTGGTCTCATGCTGGAG+AGG - chr1.4:71596906-71596925 MS.gene21371:intron 55.0%
TGCCGCAAGACCTGACATGA+TGG + chr1.4:71597478-71597497 None:intergenic 55.0%
TGTGGATTCGGCCACCATTG+CGG + chr1.4:71595838-71595857 None:intergenic 55.0%
!! CTAGTCTTGACAACGTCGGC+TGG + chr1.4:71597516-71597535 None:intergenic 55.0%
CACCTCTCCAGCATGAGACC+AGG + chr1.4:71596911-71596930 None:intergenic 60.0%
CTGGTCTCATGCTGGAGAGG+TGG - chr1.4:71596909-71596928 MS.gene21371:intron 60.0%
GACCAAGCCTTGCCCAAGTG+GGG + chr1.4:71597653-71597672 None:intergenic 60.0%
GCCGCCCTCTATCATTGGCA+AGG - chr1.4:71596085-71596104 MS.gene21371:CDS 60.0%
GGACCAAGCCTTGCCCAAGT+GGG + chr1.4:71597654-71597673 None:intergenic 60.0%
GGTACACAGGCATGAGGGGT+TGG + chr1.4:71595662-71595681 None:intergenic 60.0%
TGGACCAAGCCTTGCCCAAG+TGG + chr1.4:71597655-71597674 None:intergenic 60.0%
TTCCCCACTTGGGCAAGGCT+TGG - chr1.4:71597648-71597667 MS.gene21371:intron 60.0%
! CTTGGGCAAGGCTTGGTCCA+TGG - chr1.4:71597655-71597674 MS.gene21371:intron 60.0%
CTCCCCATGGAGTTGGAGCC+TGG + chr1.4:71595886-71595905 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 71595632 71597740 71595632 ID=MS.gene21371
chr1.4 mRNA 71595632 71597740 71595632 ID=MS.gene21371.t1;Parent=MS.gene21371
chr1.4 exon 71597732 71597740 71597732 ID=MS.gene21371.t1.exon1;Parent=MS.gene21371.t1
chr1.4 CDS 71597732 71597740 71597732 ID=cds.MS.gene21371.t1;Parent=MS.gene21371.t1
chr1.4 exon 71597230 71597661 71597230 ID=MS.gene21371.t1.exon2;Parent=MS.gene21371.t1
chr1.4 CDS 71597230 71597661 71597230 ID=cds.MS.gene21371.t1;Parent=MS.gene21371.t1
chr1.4 exon 71595632 71596174 71595632 ID=MS.gene21371.t1.exon3;Parent=MS.gene21371.t1
chr1.4 CDS 71595632 71596174 71595632 ID=cds.MS.gene21371.t1;Parent=MS.gene21371.t1
Gene Sequence

>MS.gene21371

ATGGCTGAGGTAATTTCAATCTAATCTCCAACCCCTCATGCCTGTGTACCTTGTCAATTCATTGTATTGTTTGTCTTAGAATAGCCTGCCCCGTGCATATTTTATTTTGGCGAGTTGGGTTTTCTTGTATGTACCAATGAAATCAGGCAATCAACAGGGTGGAGTTGACAATACTCATACAAAGATTTTACTAACATCATTATCCGCAATGGTGGCCGAATCCACAACTTTCCCTATAGACTTGATCAAAACCAGGCTCCAACTCCATGGGGAGTCACTCTCATCAACTCGTCCAACCGGTGCATTTCGAATAGGCTTAGATATTATTCGTGAACAAGGTCCTCTTGGCCTTTATAAGGGCTTGTCTCCAGCAATTCTTAGACACCTATTCTACACACCTATTCGAATTGTTGGCTATGAGCACCTCAGGAGTGTTATTTCTGCTGAGAATGGGCCGCCCTCTATCATTGGCAAGGCTGTTGTTGGTGGAATCTCTGGCAGTATGGCTCAGGTGAGAATTACATGGTCTGAAATGTGTTGTATAGTTAATATTTGTGCAGAATTCTTGTCAATTTAGTCATTTCTCATAGTAAGTAAATAATTCAGATTTGTAATTGAAATTTTTCTATATCTTTTTATTTGAAAATGCTGAGCATCAAGATTATTATATATTTAAAGGATAAAAGTTCCAAGATTCAGGCTTGAGCCTGTTCCAAAAAATAGTTAAGTTACAGTCTCTTCATTTGAATTCTGTTGTTAAGACTTAAGAGTTTCAAGAACATAATTTTATGCCTTCCAACTTCAAAGAACACCATCTGCCGGATTTATGAACATAGTAAAAGAATATGTGGTGTTTGTACATCAATTATCTGTTTTATACCATTGATTGATTGATTCAGTATTAGGTAGATATATCTCGACTTTTGTGTTTTTCGACTGATGTTTATCTTAGTTACTAGTGGGGTTAGCCTAGTCGGTTAGTCTGTCGTATACATAACGTCTGCCTTGTCTTGATCCCTGGTCTAGGTGATTCAGCCTATGTGAGAGCTTTGCACACGTTTCTGGATTGCCTTTGTTATAAAATTCTGATTCTACACTCCCTCAGGCATAAGCTTTACTAAGTTTTAACCTTGTTGCAATTAGCCACCCACAAATGTTAGACAAACAATACAACCAATCTCAACCAAAGAACTTAGGAAACTAAAATCCTTTAAAAAGGTGTAGGCGTGTAGTGACTTGTGTATTTAGTTTCTAGAGAATCTTTGAAAATCTCATACCTGGTCTCATGCTGGAGAGGTGGAAATAAAATATTAGAATTATGGTTTCATCAGTTAGAAGCAAAAGTAGCCATGAGATGCTAATAGTTAAACAAGAGATCAAAGAAAAATGAAGAAATATCTGCTGACCATTGTGATAAAATCATAAAATGCAATTTTACAAGAATATAATTTCCAATGCACTGTAACTTTGGAGACAAATCCATGTTTTAACTGACTGCGCACCTTTATATTTGTCTTTGGAAAATTACAGATTTATATTTTTTATTATTTACAATTAGGAGTACAGGTTATAGCAAGCCCGGCTGATCTTGTCAAGGTGAGGATGCAAGCTGATAGTCAAATGATGAGAAAAGGTCTTCAACCTCGGTATTCAGGGCCATTTGATGCTTTTAACAAAATCATTAAAGCTGAAGGATTTCAAGGACTGTGGAAGGGTGTTTTTCCCAATATCCAAAGAGCCTTCTTAGTGAACATGGGGGAATTAGCCTGTTATGATCACGCTAAGCAATTTGTTATTAAAAGTAAGATAGCTGAGGATAACGTTTATGCCCACACATTAGCTTCCATCATGTCAGGTCTTGCGGCAACTTCTTTAAGTTGTCCAGCCGACGTTGTCAAGACTAGAATGATGAATCAGGCAGCTAAAAAGGAAGGGAATGTCTTATATAGAAGCTCTTATGATTGCTTGGTGAAGACAGTTAAAGTTGAAGGAATAAGAGCACTCTGGAAAGGATTCTTCCCCACTTGGGCAAGGCTTGGTCCATGGCAATTCGTGTTCTGGGTTTCCTACGAGAAGTTTAGAAAATTTGCTGGGCTCTCTTCTTTCTAG
Protein sequence

>MS.gene21371.t1

MAENSLPRAYFILASWVFLYVPMKSGNQQGGVDNTHTKILLTSLSAMVAESTTFPIDLIKTRLQLHGESLSSTRPTGAFRIGLDIIREQGPLGLYKGLSPAILRHLFYTPIRIVGYEHLRSVISAENGPPSIIGKAVVGGISGSMAQVIASPADLVKVRMQADSQMMRKGLQPRYSGPFDAFNKIIKAEGFQGLWKGVFPNIQRAFLVNMGELACYDHAKQFVIKSKIAEDNVYAHTLASIMSGLAATSLSCPADVVKTRMMNQAAKKEGNVLYRSSYDCLVKTVKVEGIRALWKGFFPTWARLGPWQFVFWVSYEKFRKFAGLSSF