AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84655


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84655.t1 MTR_7g066690 98.033 305 6 0 1 305 1 305 0.0 613
MS.gene84655.t1 MTR_4g018750 88.000 300 36 0 6 305 4 303 0.0 557
MS.gene84655.t1 MTR_4g018750 88.462 260 30 0 6 265 4 263 2.09e-173 481
MS.gene84655.t1 MTR_3g462140 76.109 293 69 1 9 300 7 299 2.76e-160 449
MS.gene84655.t1 MTR_5g032420 36.825 315 168 4 17 300 6 320 4.20e-62 199
MS.gene84655.t1 MTR_3g100570 36.246 309 173 4 17 302 6 313 2.06e-61 197
MS.gene84655.t1 MTR_8g068890 36.774 310 168 5 17 300 6 313 5.37e-58 189
MS.gene84655.t1 MTR_1g090330 35.540 287 170 6 20 298 17 296 1.30e-57 187
MS.gene84655.t1 MTR_1g090330 27.273 198 140 3 8 205 102 295 1.07e-16 79.3
MS.gene84655.t1 MTR_1g090330 29.319 191 123 3 120 301 13 200 1.96e-15 75.5
MS.gene84655.t1 MTR_1g088995 35.430 302 167 5 7 298 23 306 3.10e-48 164
MS.gene84655.t1 MTR_1g088995 28.333 180 119 4 129 304 41 214 5.25e-12 65.9
MS.gene84655.t1 MTR_8g086070 32.770 296 168 5 17 300 21 297 2.57e-39 140
MS.gene84655.t1 MTR_8g086070 25.628 199 127 4 112 300 12 199 2.00e-12 67.0
MS.gene84655.t1 MTR_1g088995 36.321 212 113 4 17 224 33 226 5.56e-31 116
MS.gene84655.t1 MTR_1g088995 28.333 180 119 4 129 304 41 214 3.42e-12 65.5
MS.gene84655.t1 MTR_8g086070 34.946 186 108 1 17 202 21 193 3.01e-27 106
MS.gene84655.t1 MTR_8g086070 26.768 198 126 4 112 300 12 199 7.07e-13 67.0
MS.gene84655.t1 MTR_4g057850 27.541 305 189 11 19 305 24 314 2.01e-26 106
MS.gene84655.t1 MTR_4g057850 30.435 184 109 7 116 289 18 192 1.10e-11 64.7
MS.gene84655.t1 MTR_8g076760 29.167 288 173 7 33 300 30 306 5.55e-26 105
MS.gene84655.t1 MTR_4g119770 24.375 320 201 9 18 302 15 328 4.29e-21 92.0
MS.gene84655.t1 MTR_2g436930 22.956 318 206 7 18 302 16 327 1.05e-20 90.9
MS.gene84655.t1 MTR_7g084400 30.325 277 165 6 30 297 226 483 1.73e-20 91.7
MS.gene84655.t1 MTR_7g068340 24.194 248 173 6 31 277 101 334 3.54e-20 90.1
MS.gene84655.t1 MTR_7g068340 25.500 200 128 3 8 207 178 356 7.23e-13 68.9
MS.gene84655.t1 MTR_8g066975 29.082 196 126 2 117 299 4 199 4.21e-20 88.6
MS.gene84655.t1 MTR_8g066975 29.123 285 166 10 33 296 24 293 9.17e-20 87.8
MS.gene84655.t1 MTR_8g066975 28.571 196 127 4 14 207 112 296 2.83e-15 75.1
MS.gene84655.t1 MTR_5g009500 26.962 293 174 7 33 296 54 335 7.75e-20 88.6
MS.gene84655.t1 MTR_5g009500 26.852 216 139 5 5 207 129 338 8.89e-16 77.0
MS.gene84655.t1 MTR_7g064980 24.038 312 218 7 6 304 14 319 9.46e-20 88.2
MS.gene84655.t1 MTR_1g087840 26.761 284 182 8 33 302 35 306 1.15e-19 87.8
MS.gene84655.t1 MTR_5g030530 29.286 280 172 10 33 296 24 293 1.41e-19 87.4
MS.gene84655.t1 MTR_5g030530 27.179 195 129 2 117 298 4 198 7.43e-17 79.7
MS.gene84655.t1 MTR_5g030530 28.272 191 124 4 19 207 117 296 1.29e-14 73.2
MS.gene84655.t1 MTR_8g092080 28.470 281 158 8 28 301 63 307 1.46e-19 87.8
MS.gene84655.t1 MTR_7g109135 26.621 293 195 6 18 299 23 306 1.81e-19 87.4
MS.gene84655.t1 MTR_8g027975 26.263 297 179 7 33 299 67 353 2.69e-18 84.3
MS.gene84655.t1 MTR_8g027975 27.523 218 137 4 5 207 142 353 2.85e-18 84.3
MS.gene84655.t1 MTR_8g027975 26.396 197 129 5 117 301 47 239 6.35e-12 65.9
MS.gene84655.t1 MTR_7g117030 23.511 319 206 7 1 282 1 318 4.44e-18 83.6
MS.gene84655.t1 MTR_4g119770 26.908 249 155 8 18 245 15 257 9.64e-18 81.6
MS.gene84655.t1 MTR_4g016730 23.411 299 193 7 14 298 86 362 1.92e-17 82.0
MS.gene84655.t1 MTR_3g104500 23.273 275 200 4 33 299 50 321 9.97e-17 79.7
MS.gene84655.t1 MTR_3g104500 27.317 205 136 5 4 205 125 319 2.10e-15 75.9
MS.gene84655.t1 MTR_1g097890 28.058 278 163 8 28 301 62 306 1.48e-16 79.0
MS.gene84655.t1 MTR_2g098070 24.535 269 194 5 12 273 61 327 3.10e-16 78.6
MS.gene84655.t1 MTR_2g098070 30.964 197 125 6 13 208 167 353 1.34e-11 65.1
MS.gene84655.t1 MTR_5g055410 26.644 289 174 8 33 301 37 307 4.10e-16 78.2
MS.gene84655.t1 MTR_8g096050 27.055 292 184 8 17 297 227 500 4.33e-16 79.0
MS.gene84655.t1 MTR_8g096050 24.651 215 138 7 1 207 304 502 3.57e-11 63.9
MS.gene84655.t1 MTR_7g015870 26.552 290 190 8 29 303 37 318 8.39e-16 77.0
MS.gene84655.t1 MTR_4g012850 30.000 170 109 4 33 201 126 286 2.43e-15 75.5
MS.gene84655.t1 MTR_4g012850 22.603 292 202 7 17 299 16 292 4.24e-12 65.9
MS.gene84655.t1 MTR_2g102010 24.345 267 179 7 17 274 17 269 3.40e-15 74.7
MS.gene84655.t1 MTR_7g015870 26.786 280 182 8 33 297 37 308 5.19e-15 74.7
MS.gene84655.t1 MTR_7g109135 25.256 293 192 7 18 299 23 299 1.66e-14 73.2
MS.gene84655.t1 MTR_3g090820 25.806 248 161 7 57 282 124 370 1.90e-14 73.6
MS.gene84655.t1 MTR_4g094578 24.176 273 172 7 17 276 29 279 1.98e-14 72.8
MS.gene84655.t1 MTR_7g109135 26.068 234 156 5 77 299 1 228 7.35e-14 70.1
MS.gene84655.t1 MTR_7g109135 23.980 196 136 5 29 222 57 241 9.07e-11 61.2
MS.gene84655.t1 MTR_7g109135 27.700 213 137 5 98 299 1 207 9.73e-14 69.7
MS.gene84655.t1 MTR_7g109135 23.980 196 136 5 29 222 36 220 6.60e-11 61.6
MS.gene84655.t1 MTR_6g015860 26.027 292 193 9 29 305 29 312 9.97e-14 70.9
MS.gene84655.t1 MTR_3g098460 24.573 293 190 8 17 297 205 478 1.14e-13 71.6
MS.gene84655.t1 MTR_4g088545 29.143 175 114 5 33 204 28 195 1.25e-13 70.1
MS.gene84655.t1 MTR_4g088545 29.143 175 114 5 33 204 28 195 2.12e-13 68.9
MS.gene84655.t1 MTR_1g095780 25.000 276 178 8 33 305 541 790 2.64e-13 70.9
MS.gene84655.t1 MTR_4g078545 24.031 258 187 7 23 273 81 336 5.38e-13 68.9
MS.gene84655.t1 MTR_4g088545 29.143 175 114 5 33 204 28 195 5.92e-13 68.6
MS.gene84655.t1 MTR_6g033280 26.872 227 134 8 26 239 72 279 6.32e-13 68.9
MS.gene84655.t1 MTR_3g104600 23.588 301 196 8 22 299 40 329 1.50e-12 67.8
MS.gene84655.t1 MTR_8g036880 24.088 274 190 7 12 273 97 364 1.93e-12 67.4
MS.gene84655.t1 MTR_1g012030 22.414 290 196 6 19 299 141 410 3.47e-12 67.0
MS.gene84655.t1 MTR_3g025800 22.436 312 209 8 17 301 28 333 3.73e-12 66.6
MS.gene84655.t1 MTR_2g032610 25.436 287 170 10 33 293 45 313 4.44e-12 66.2
MS.gene84655.t1 MTR_5g073040 26.014 296 184 12 19 300 41 315 5.76e-12 65.9
MS.gene84655.t1 MTR_3g028590 23.529 272 191 7 13 273 93 358 1.03e-11 65.5
MS.gene84655.t1 MTR_3g028590 23.529 272 191 7 13 273 89 354 1.41e-11 65.1
MS.gene84655.t1 MTR_8g099910 25.833 240 146 8 13 239 69 289 2.16e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84655.t1 AT3G54110 82.026 306 51 3 1 305 1 303 0.0 518
MS.gene84655.t1 AT5G58970 72.945 292 79 0 10 301 9 300 2.24e-167 467
MS.gene84655.t1 AT5G58970 27.053 207 137 4 4 209 107 300 1.42e-17 81.6
MS.gene84655.t1 AT5G58970 67.416 267 81 2 10 274 9 271 9.22e-129 368
MS.gene84655.t1 AT4G24570 38.188 309 165 4 16 300 5 311 1.91e-62 200
MS.gene84655.t1 AT1G14140 36.749 283 169 4 20 296 19 297 9.21e-61 196
MS.gene84655.t1 AT1G14140 30.387 181 109 4 114 280 9 186 6.94e-17 79.7
MS.gene84655.t1 AT2G22500 37.013 308 172 4 17 303 6 312 4.73e-60 194
MS.gene84655.t1 AT4G03115 36.332 289 159 6 17 298 38 308 1.06e-51 172
MS.gene84655.t1 AT4G03115 36.332 289 159 6 17 298 70 340 4.07e-51 172
MS.gene84655.t1 AT5G09470 33.887 301 189 5 6 303 43 336 2.80e-50 169
MS.gene84655.t1 AT4G03115 36.585 246 137 5 60 298 12 245 7.48e-46 155
MS.gene84655.t1 AT4G03115 26.220 164 106 3 18 181 72 220 6.62e-11 62.0
MS.gene84655.t1 AT4G03115 36.555 238 132 5 68 298 12 237 5.21e-45 153
MS.gene84655.t1 AT4G03115 26.220 164 106 3 18 181 64 212 5.27e-11 62.0
MS.gene84655.t1 AT5G19760 32.423 293 177 3 17 302 18 296 4.40e-41 144
MS.gene84655.t1 AT4G03115 38.350 206 108 5 17 221 38 225 2.08e-33 122
MS.gene84655.t1 AT4G03115 38.350 206 108 5 17 221 38 225 2.40e-33 122
MS.gene84655.t1 AT5G01340 28.421 285 176 9 30 300 30 300 2.04e-25 103
MS.gene84655.t1 AT3G21390 25.243 309 190 6 27 300 29 331 1.36e-23 99.0
MS.gene84655.t1 AT3G51870 26.277 274 187 6 31 303 105 364 1.50e-23 99.8
MS.gene84655.t1 AT5G48970 24.611 321 200 7 18 302 23 337 2.12e-23 98.6
MS.gene84655.t1 AT3G21390 25.243 309 190 6 27 300 51 353 2.35e-23 98.6
MS.gene84655.t1 AT5G66380 28.618 304 186 10 18 301 10 302 1.51e-22 95.9
MS.gene84655.t1 AT5G66380 29.680 219 138 7 5 215 98 308 1.48e-15 76.3
MS.gene84655.t1 AT5G01500 26.296 270 184 6 30 298 132 387 3.47e-22 96.3
MS.gene84655.t1 AT5G46800 29.825 285 167 11 33 296 24 296 1.01e-20 90.5
MS.gene84655.t1 AT5G46800 27.411 197 127 2 119 299 6 202 1.16e-17 82.0
MS.gene84655.t1 AT5G46800 29.208 202 127 4 11 207 109 299 5.39e-16 77.4
MS.gene84655.t1 AT5G46800 29.825 285 167 11 33 296 24 296 1.01e-20 90.5
MS.gene84655.t1 AT5G46800 27.411 197 127 2 119 299 6 202 1.16e-17 82.0
MS.gene84655.t1 AT5G46800 29.208 202 127 4 11 207 109 299 5.39e-16 77.4
MS.gene84655.t1 AT5G46800 29.825 285 167 11 33 296 24 296 1.01e-20 90.5
MS.gene84655.t1 AT5G46800 27.411 197 127 2 119 299 6 202 1.16e-17 82.0
MS.gene84655.t1 AT5G46800 29.208 202 127 4 11 207 109 299 5.39e-16 77.4
MS.gene84655.t1 AT4G01100 28.814 295 168 9 33 296 8 291 3.24e-20 89.4
MS.gene84655.t1 AT4G01100 27.397 219 136 5 5 207 83 294 6.84e-17 79.7
MS.gene84655.t1 AT4G01100 28.814 295 168 9 33 296 58 341 4.02e-20 89.7
MS.gene84655.t1 AT4G01100 27.397 219 136 5 5 207 133 344 1.19e-16 79.7
MS.gene84655.t1 AT4G01100 27.168 173 110 5 117 277 38 206 4.01e-11 63.5
MS.gene84655.t1 AT5G61810 28.727 275 173 6 27 297 75 330 7.35e-20 88.6
MS.gene84655.t1 AT5G61810 29.044 272 170 6 30 297 221 473 2.67e-19 88.2
MS.gene84655.t1 AT3G53940 25.862 290 194 6 23 299 79 360 9.26e-19 85.9
MS.gene84655.t1 AT1G25380 26.298 289 178 9 33 302 37 309 1.69e-18 85.1
MS.gene84655.t1 AT1G25380 26.298 289 178 9 33 302 37 309 1.69e-18 85.1
MS.gene84655.t1 AT2G47490 27.500 280 178 8 33 299 33 300 2.61e-18 84.0
MS.gene84655.t1 AT5G56450 26.132 287 181 11 33 299 50 325 1.12e-17 82.4
MS.gene84655.t1 AT5G56450 26.178 191 129 6 16 205 144 323 5.27e-11 63.2
MS.gene84655.t1 AT4G01100 27.184 309 169 9 33 296 58 355 1.58e-17 82.4
MS.gene84655.t1 AT4G01100 27.397 219 136 5 5 207 147 358 8.92e-17 80.1
MS.gene84655.t1 AT5G07320 27.899 276 166 7 31 297 223 474 2.50e-17 82.4
MS.gene84655.t1 AT5G48970 23.529 272 172 6 61 302 1 266 5.31e-17 79.7
MS.gene84655.t1 AT1G34065 26.408 284 160 9 28 301 86 330 4.93e-16 77.8
MS.gene84655.t1 AT1G34065 26.408 284 160 9 28 301 93 337 5.51e-16 77.8
MS.gene84655.t1 AT3G55640 22.756 312 220 6 6 304 27 330 1.06e-15 76.6
MS.gene84655.t1 AT3G55640 22.756 312 220 6 6 304 27 330 1.06e-15 76.6
MS.gene84655.t1 AT1G79900 25.000 248 159 7 33 274 32 258 1.11e-15 76.3
MS.gene84655.t1 AT1G79900 32.749 171 94 6 33 201 126 277 1.59e-13 70.1
MS.gene84655.t1 AT5G13490 24.818 274 188 7 12 273 83 350 1.95e-15 76.6
MS.gene84655.t1 AT5G13490 28.426 197 131 6 13 208 189 376 5.69e-11 63.2
MS.gene84655.t1 AT5G13490 24.818 274 188 7 12 273 83 350 1.95e-15 76.6
MS.gene84655.t1 AT5G13490 28.426 197 131 6 13 208 189 376 5.69e-11 63.2
MS.gene84655.t1 AT4G27940 23.077 338 200 7 5 282 53 390 2.94e-15 76.3
MS.gene84655.t1 AT4G28390 24.242 264 191 6 17 273 83 344 4.07e-15 75.5
MS.gene84655.t1 AT4G28390 24.242 264 191 6 17 273 83 344 4.07e-15 75.5
MS.gene84655.t1 AT2G37890 25.714 315 188 12 15 302 40 335 5.46e-15 74.7
MS.gene84655.t1 AT4G39460 25.862 290 168 8 17 297 58 309 1.23e-14 73.6
MS.gene84655.t1 AT4G39460 25.862 290 168 8 17 297 58 309 1.23e-14 73.6
MS.gene84655.t1 AT4G39460 25.862 290 168 8 17 297 58 309 1.23e-14 73.6
MS.gene84655.t1 AT5G15640 25.694 288 187 9 29 298 33 311 2.69e-14 72.4
MS.gene84655.t1 AT5G15640 25.694 288 187 9 29 298 40 318 3.15e-14 72.4
MS.gene84655.t1 AT1G74240 23.625 309 206 8 17 301 36 338 1.27e-13 70.9
MS.gene84655.t1 AT2G35800 23.929 280 177 7 33 305 561 811 1.28e-13 71.6
MS.gene84655.t1 AT3G08580 24.088 274 190 7 12 273 79 346 2.31e-13 70.5
MS.gene84655.t1 AT3G08580 24.088 274 190 7 12 273 79 346 2.31e-13 70.5
MS.gene84655.t1 AT2G33820 28.241 216 134 7 33 234 34 242 4.55e-13 68.6
MS.gene84655.t1 AT1G74240 23.891 293 193 8 33 301 4 290 6.00e-13 68.6
MS.gene84655.t1 AT5G51050 25.503 298 196 8 8 297 214 493 7.56e-13 68.9
MS.gene84655.t1 AT5G17400 24.506 253 180 6 33 277 30 279 1.00e-12 67.8
MS.gene84655.t1 AT5G17400 26.633 199 133 5 13 209 115 302 4.20e-11 63.2
MS.gene84655.t1 AT5G14040 26.957 230 136 8 23 239 88 298 2.56e-12 67.0
MS.gene84655.t1 AT2G33820 28.169 284 176 10 33 299 34 306 5.62e-12 65.9
MS.gene84655.t1 AT2G17270 25.758 264 161 7 23 276 28 266 1.19e-11 64.7
MS.gene84655.t1 AT1G14560 27.638 199 122 7 27 211 35 225 1.91e-11 63.2
MS.gene84655.t1 AT1G14560 27.638 199 122 7 27 211 133 323 3.15e-11 63.5
MS.gene84655.t1 AT4G32400 23.875 289 193 7 19 299 116 385 3.63e-11 63.9
MS.gene84655.t1 AT1G07030 24.839 310 199 10 7 302 30 319 4.09e-11 63.2
MS.gene84655.t1 AT1G14560 28.902 173 102 6 27 185 133 298 8.88e-11 62.0
MS.gene84655.t1 AT4G26180 25.758 198 138 4 19 211 119 312 8.90e-11 62.4

Find 83 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTCACACATCTTCTTTC+TGG 0.144445 7.3:-38265318 MS.gene84655:CDS
ACACATCTTCTTTCTGGTCT+TGG 0.209088 7.3:-38265312 MS.gene84655:CDS
CACATCTTCTTTCTGGTCTT+GGG 0.210750 7.3:-38265311 MS.gene84655:CDS
TGGTATGAACCCCTTATAAA+AGG 0.245691 7.3:+38264262 None:intergenic
GATCCTAGCCGTCCGAAATT+TGG 0.264523 7.3:+38264242 None:intergenic
CCCAGCATACCCTTGTATTT+AGG 0.280098 7.3:+38266200 None:intergenic
CTTCAAAAGCAAGCTGTATC+TGG 0.311663 7.3:-38266239 MS.gene84655:CDS
GGTTTCTTTGCAGTCTGTAT+TGG 0.315274 7.3:-38265285 MS.gene84655:CDS
CTTCTTTCTGGTCTTGGGGC+AGG 0.332493 7.3:-38265306 MS.gene84655:CDS
AAGGGGTTCATACCAAATTT+CGG 0.347119 7.3:-38264254 MS.gene84655:CDS
GCCTAAATACAAGGGTATGC+TGG 0.350365 7.3:-38266201 MS.gene84655:CDS
ATAGCATTTCTTGCGACATT+CGG 0.367097 7.3:+38265517 None:intergenic
ATTTCGGACGGCTAGGATCT+TGG 0.368371 7.3:-38264238 MS.gene84655:CDS
AGGAAGGAATCGGAGCTCTT+TGG 0.369084 7.3:-38265552 MS.gene84655:CDS
TGTATGGAGGATTAAGAATT+GGG 0.372551 7.3:-38266097 MS.gene84655:CDS
CAATAAATTACCACATCAAC+TGG 0.386249 7.3:+38265258 None:intergenic
TTGTATGGAGGATTAAGAAT+TGG 0.387428 7.3:-38266098 MS.gene84655:CDS
GTGTATCGCCTGGGCACGCC+TGG 0.388957 7.3:+38265719 None:intergenic
TAGCATTTCTTGCGACATTC+GGG 0.398904 7.3:+38265518 None:intergenic
GGAGCTCTTTGGACTGGTAT+TGG 0.402861 7.3:-38265541 MS.gene84655:CDS
AGGTTAAGAATTTGTATGTT+GGG 0.403865 7.3:-38265963 MS.gene84655:CDS
CTGTTTCACTTGATCGTAGC+TGG 0.410355 7.3:+38265474 None:intergenic
ATTCTTGCTGCACTAACAAC+TGG 0.421336 7.3:-38265904 MS.gene84655:intron
CAGGTTAAGAATTTGTATGT+TGG 0.429543 7.3:-38265964 MS.gene84655:CDS
CAGCTACGATCAAGTGAAAC+AGG 0.438529 7.3:-38265473 MS.gene84655:intron
CTCTGGAAGGGAATTGTGCC+AGG 0.439655 7.3:-38266137 MS.gene84655:CDS
GAACAGTTGGAACCATTGCC+AGG 0.451548 7.3:-38266178 MS.gene84655:CDS
CCATGTTGGAGATGCTCCCT+TGG 0.466188 7.3:-38265935 MS.gene84655:CDS
GGAACCATTGCCAGGGAAGA+AGG 0.470527 7.3:-38266170 MS.gene84655:CDS
TTACACCGTCAATGTTTGTA+TGG 0.470936 7.3:-38266113 MS.gene84655:CDS
GCAGGTTAAGTCAAGAATGA+TGG 0.485116 7.3:-38264938 MS.gene84655:intron
AGTGCCAGCGAATGAGATAT+CGG 0.498312 7.3:+38267590 None:intergenic
AATTGCCTCCAGGCGTGCCC+AGG 0.499791 7.3:-38265727 MS.gene84655:CDS
ATCCTCCATACAAACATTGA+CGG 0.501158 7.3:+38266108 None:intergenic
TCAAACAAACAGGAAGGAAT+CGG 0.504703 7.3:-38265562 MS.gene84655:intron
AAGACCTTCTTCCCTGGCAA+TGG 0.506834 7.3:+38266166 None:intergenic
CACTGGACACTGCCAAAGTT+AGG 0.506988 7.3:-38266268 MS.gene84655:CDS
GGCGTGCCCAGGCGATACAC+TGG 0.510247 7.3:-38265716 MS.gene84655:CDS
AAGAAGGTCTTTCAGCACTC+TGG 0.510738 7.3:-38266154 MS.gene84655:CDS
ACATCTTCTTTCTGGTCTTG+GGG 0.512565 7.3:-38265310 MS.gene84655:CDS
ATATTCAACAATTGTGAGAC+AGG 0.518426 7.3:-38265681 MS.gene84655:intron
CCTAAATACAAGGGTATGCT+GGG 0.519164 7.3:-38266200 MS.gene84655:CDS
CAACGATCCAGTGTATCGCC+TGG 0.521074 7.3:+38265709 None:intergenic
TTGAAGTTGAAGCCTAACTT+TGG 0.522963 7.3:+38266256 None:intergenic
TGCTGAAAGACCTTCTTCCC+TGG 0.527885 7.3:+38266160 None:intergenic
AAGGGTATGCTGGGAACAGT+TGG 0.528932 7.3:-38266191 MS.gene84655:CDS
AATTCCGATATCTCATTCGC+TGG 0.538494 7.3:-38267594 MS.gene84655:CDS
ATAGATATGTACTATTCCAC+TGG 0.539637 7.3:-38266285 MS.gene84655:intron
ACAACATTATCAGTGAATCC+TGG 0.542160 7.3:+38265336 None:intergenic
AACCCCTTATAAAAGGCTAA+AGG 0.543711 7.3:+38264269 None:intergenic
ATACCAAATTTCGGACGGCT+AGG 0.545138 7.3:-38264245 MS.gene84655:CDS
TGTCAAAGTTAGACTTCAAG+CGG 0.546257 7.3:-38265756 MS.gene84655:CDS
GCAAGCTGTATCTGGTGATA+CGG 0.547286 7.3:-38266231 MS.gene84655:CDS
CACCGTCAATGTTTGTATGG+AGG 0.550418 7.3:-38266110 MS.gene84655:CDS
AGGTCTTTCAGCACTCTGGA+AGG 0.552750 7.3:-38266150 MS.gene84655:CDS
GGTCTTTCAGCACTCTGGAA+GGG 0.553394 7.3:-38266149 MS.gene84655:CDS
ACATGCAGAGAAAGCACTAC+TGG 0.553941 7.3:+38267563 None:intergenic
GGTGACCTTGCCTAAATACA+AGG 0.556166 7.3:-38266210 MS.gene84655:CDS
CAGGTTAAGTCAAGAATGAT+GGG 0.557304 7.3:-38264937 MS.gene84655:CDS
GGAATCGGAGCTCTTTGGAC+TGG 0.560567 7.3:-38265547 MS.gene84655:CDS
CTAACTTTGACAAGATCAGT+AGG 0.562249 7.3:+38265767 None:intergenic
GCGGAAGGGAAATTGCCTCC+AGG 0.573477 7.3:-38265737 MS.gene84655:CDS
AAAGTTAGACTTCAAGCGGA+AGG 0.576622 7.3:-38265752 MS.gene84655:CDS
AAACATTGACGGTGTAACCC+TGG 0.578608 7.3:+38266119 None:intergenic
CTTTACGAAGCAGCTATGGT+GGG 0.578997 7.3:-38267630 None:intergenic
AACGATCCAGTGTATCGCCT+GGG 0.580815 7.3:+38265710 None:intergenic
GACAGGTGCTGTGGCAATTG+CGG 0.592370 7.3:-38265798 MS.gene84655:intron
TATTGGCTCTCCAGTTGATG+TGG 0.594648 7.3:-38265268 MS.gene84655:intron
CCAAGGGAGCATCTCCAACA+TGG 0.598113 7.3:+38265935 None:intergenic
CATACCCTTGTATTTAGGCA+AGG 0.602817 7.3:+38266205 None:intergenic
TATCGCCTGGGCACGCCTGG+AGG 0.604506 7.3:+38265722 None:intergenic
GAAGCAGCTATGGTGGGAGG+TGG 0.605888 7.3:-38267624 None:intergenic
AACAGTTGGAACCATTGCCA+GGG 0.606976 7.3:-38266177 MS.gene84655:CDS
AAGTTAGACTTCAAGCGGAA+GGG 0.613618 7.3:-38265751 MS.gene84655:CDS
TGTCTTATCGACAGGTGCTG+TGG 0.616156 7.3:-38265807 MS.gene84655:intron
GGTTCATACCAAATTTCGGA+CGG 0.624135 7.3:-38264250 MS.gene84655:CDS
TATGTTGGGAAAGACCATGT+TGG 0.626722 7.3:-38265949 MS.gene84655:CDS
TACGAAGCAGCTATGGTGGG+AGG 0.645685 7.3:-38267627 None:intergenic
TTTCTCTGCATGTTTCGCTG+AGG 0.650743 7.3:-38267553 MS.gene84655:intron
AGGTGCTGTGGCAATTGCGG+TGG 0.661492 7.3:-38265795 MS.gene84655:CDS
CTAACTTTGGCAGTGTCCAG+TGG 0.665045 7.3:+38266269 None:intergenic
GTGACCTTGCCTAAATACAA+GGG 0.683839 7.3:-38266209 MS.gene84655:CDS
TCTGGAAGGGAATTGTGCCA+GGG 0.685055 7.3:-38266136 MS.gene84655:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAAAAAATGATGTA+TGG - chr7.3:38266611-38266630 MS.gene84655:intron 15.0%
!! ATTTATTGAACATTTATTTG+AGG - chr7.3:38264698-38264717 MS.gene84655:intron 15.0%
!! CAATAATAATGAAAAATTCT+TGG + chr7.3:38266928-38266947 None:intergenic 15.0%
!! CTTAAAACTAAAGAAAAATA+GGG + chr7.3:38266666-38266685 None:intergenic 15.0%
!!! AAAATTGTTTTTGCAAATTT+TGG + chr7.3:38267431-38267450 None:intergenic 15.0%
!!! TGATTTTTGTTATGTAATAA+TGG - chr7.3:38264085-38264104 MS.gene84655:intron 15.0%
!!! TTTTTATACTATTATCCTTT+TGG - chr7.3:38264428-38264447 MS.gene84655:intron 15.0%
!! AAGATGGAATAATTTAATCA+GGG + chr7.3:38266514-38266533 None:intergenic 20.0%
!! AGTACAAAACTTAAAATGAA+TGG + chr7.3:38266337-38266356 None:intergenic 20.0%
!! GCTTAAAACTAAAGAAAAAT+AGG + chr7.3:38266667-38266686 None:intergenic 20.0%
!! GTAAAAAAGTAAAAAAGATC+AGG + chr7.3:38266111-38266130 None:intergenic 20.0%
!! TAAAAAGTTCTTCAAGAAAT+TGG - chr7.3:38267604-38267623 MS.gene84655:CDS 20.0%
!! TTTACTTGTGAATATTTGAT+TGG - chr7.3:38266255-38266274 MS.gene84655:CDS 20.0%
!!! TTTAAGTTTTGTACTTCAAT+TGG - chr7.3:38266342-38266361 MS.gene84655:intron 20.0%
! AGGTTAAGAATTTGTATGTT+GGG - chr7.3:38265524-38265543 MS.gene84655:CDS 25.0%
! ATCAAATTTGAATCAGCTAT+TGG - chr7.3:38265002-38265021 MS.gene84655:intron 25.0%
! ATCTGATGTGTTAATTACTT+TGG - chr7.3:38265493-38265512 MS.gene84655:CDS 25.0%
! ATTATAAATCAAATGCCTGT+AGG + chr7.3:38264758-38264777 None:intergenic 25.0%
! ATTTAATCAGGGAAATGATA+AGG + chr7.3:38266503-38266522 None:intergenic 25.0%
! ATTTCATTATATGCTATGAC+CGG + chr7.3:38265158-38265177 None:intergenic 25.0%
! GAAGATGGAATAATTTAATC+AGG + chr7.3:38266515-38266534 None:intergenic 25.0%
! GATGAAAATTTACGAAGAAA+AGG + chr7.3:38263981-38264000 None:intergenic 25.0%
! TATCTTTCAAAAACCATAGA+AGG + chr7.3:38265845-38265864 None:intergenic 25.0%
! TTAATGCATGTTTGAATTGA+CGG - chr7.3:38264558-38264577 MS.gene84655:intron 25.0%
!! AATCTGTTTTGTGATCAAAT+AGG - chr7.3:38264487-38264506 MS.gene84655:intron 25.0%
!! TATACTATTATCCTTTTGGT+TGG - chr7.3:38264432-38264451 MS.gene84655:intron 25.0%
!! TCAAATAGGATTTTTCATGT+TGG - chr7.3:38264501-38264520 MS.gene84655:intron 25.0%
!! TTCTTCGTAAATTTTCATCT+GGG - chr7.3:38263982-38264001 MS.gene84655:intron 25.0%
!! TTTCTTCGTAAATTTTCATC+TGG - chr7.3:38263981-38264000 MS.gene84655:intron 25.0%
!!! AATCATTATGCCATTTTTCA+CGG + chr7.3:38264963-38264982 None:intergenic 25.0%
!!! AGTTTTAGAAGAAACGTAAT+GGG + chr7.3:38265617-38265636 None:intergenic 25.0%
!!! TAATTACTTTGGAATTGAAC+AGG - chr7.3:38265504-38265523 MS.gene84655:CDS 25.0%
!!! TTATTTTTCAAGACTTGACA+TGG - chr7.3:38264787-38264806 MS.gene84655:intron 25.0%
AGAAATTCATGCAGAGAAAA+AGG + chr7.3:38266879-38266898 None:intergenic 30.0%
AGATGTTGGAATTGGATATT+TGG - chr7.3:38264846-38264865 MS.gene84655:intron 30.0%
AGTGTTATGAGTGTTATGTA+TGG + chr7.3:38264204-38264223 None:intergenic 30.0%
ATAGATATGTACTATTCCAC+TGG - chr7.3:38265202-38265221 MS.gene84655:intron 30.0%
ATATAATCCCAAAACCCAAA+TGG + chr7.3:38264058-38264077 None:intergenic 30.0%
ATATTCAACAATTGTGAGAC+AGG - chr7.3:38265806-38265825 MS.gene84655:intron 30.0%
CAAAAACCATAGAAGGTTAA+AGG + chr7.3:38265838-38265857 None:intergenic 30.0%
CAATAAATTACCACATCAAC+TGG + chr7.3:38266232-38266251 None:intergenic 30.0%
CAGGTTAAGAATTTGTATGT+TGG - chr7.3:38265523-38265542 MS.gene84655:CDS 30.0%
GAAAGTCTTAATTGTGTGTA+CGG - chr7.3:38264889-38264908 MS.gene84655:CDS 30.0%
GAAATTCATGCAGAGAAAAA+GGG + chr7.3:38266878-38266897 None:intergenic 30.0%
GAACTAAATTGAATGTGAGT+TGG - chr7.3:38264458-38264477 MS.gene84655:intron 30.0%
TATAATCCCAAAACCCAAAT+GGG + chr7.3:38264057-38264076 None:intergenic 30.0%
TATACTCCTTTAACCTTCTA+TGG - chr7.3:38265829-38265848 MS.gene84655:intron 30.0%
TCTGCATGAATTTCTTCATT+GGG - chr7.3:38266884-38266903 MS.gene84655:intron 30.0%
TGAGAAATGAGAATGTGTAA+AGG + chr7.3:38266797-38266816 None:intergenic 30.0%
TGTATGGAGGATTAAGAATT+GGG - chr7.3:38265390-38265409 MS.gene84655:intron 30.0%
TTATGAGTGTTATGTATGGA+TGG + chr7.3:38264200-38264219 None:intergenic 30.0%
TTCAAACATGCATTAAGACT+TGG + chr7.3:38264554-38264573 None:intergenic 30.0%
TTGTATGGAGGATTAAGAAT+TGG - chr7.3:38265389-38265408 MS.gene84655:intron 30.0%
TTTCATTATATGCTATGACC+GGG + chr7.3:38265157-38265176 None:intergenic 30.0%
! ATAGGATTTTTCATGTTGGT+TGG - chr7.3:38264505-38264524 MS.gene84655:intron 30.0%
! ATTTTCAGCTCCAATATTGA+TGG + chr7.3:38264348-38264367 None:intergenic 30.0%
! CAGTTGATGTGGTAATTTAT+TGG - chr7.3:38266230-38266249 MS.gene84655:CDS 30.0%
! GAACTTGATCAGTTATGTTT+TGG + chr7.3:38266834-38266853 None:intergenic 30.0%
! GAATCCTGGAATTTTCAAAA+TGG + chr7.3:38266140-38266159 None:intergenic 30.0%
! TGATTTGTAATTGCAGATGT+TGG - chr7.3:38264832-38264851 MS.gene84655:intron 30.0%
! TTGTGTTTGTGATTTTGTTG+TGG - chr7.3:38264170-38264189 MS.gene84655:intron 30.0%
!! CATGTTTTTAACACTAGAAC+AGG - chr7.3:38267280-38267299 MS.gene84655:intron 30.0%
!! GGTTTTTGAAAGATAACATG+CGG - chr7.3:38265850-38265869 MS.gene84655:intron 30.0%
!! TAAAAACCCATTTGGGTTTT+GGG - chr7.3:38264048-38264067 MS.gene84655:intron 30.0%
!! TTTAGTCTTTTACAAGAACC+CGG - chr7.3:38265136-38265155 MS.gene84655:intron 30.0%
!! TTTAGTTCTAACCAACCAAA+AGG + chr7.3:38264446-38264465 None:intergenic 30.0%
!!! AGCAAGAATTTTTTTTGCCA+AGG + chr7.3:38265572-38265591 None:intergenic 30.0%
!!! ATGTTAACTACGCTGTTTTT+TGG - chr7.3:38265074-38265093 MS.gene84655:intron 30.0%
!!! GAGTTTTAGAAGAAACGTAA+TGG + chr7.3:38265618-38265637 None:intergenic 30.0%
!!! GCAAGAATTTTTTTTGCCAA+GGG + chr7.3:38265571-38265590 None:intergenic 30.0%
!!! TGTTTTGACGAAACAATCAA+TGG + chr7.3:38266596-38266615 None:intergenic 30.0%
AACCCCTTATAAAAGGCTAA+AGG + chr7.3:38267221-38267240 None:intergenic 35.0%
AAGGGGTTCATACCAAATTT+CGG - chr7.3:38267233-38267252 MS.gene84655:intron 35.0%
AATGAACAATCTTCGAGACA+CGG + chr7.3:38265440-38265459 None:intergenic 35.0%
ACAACATTATCAGTGAATCC+TGG + chr7.3:38266154-38266173 None:intergenic 35.0%
ATAGCATTTCTTGCGACATT+CGG + chr7.3:38265973-38265992 None:intergenic 35.0%
ATCCTCCATACAAACATTGA+CGG + chr7.3:38265382-38265401 None:intergenic 35.0%
ATCTTGCGTAAAAACCCATT+TGG - chr7.3:38264040-38264059 MS.gene84655:intron 35.0%
CAGGTTAAGTCAAGAATGAT+GGG - chr7.3:38266550-38266569 MS.gene84655:intron 35.0%
CTAACTTTGACAAGATCAGT+AGG + chr7.3:38265723-38265742 None:intergenic 35.0%
CTAATCTGCATCAAACAAAC+AGG - chr7.3:38265915-38265934 MS.gene84655:CDS 35.0%
CTATGTCGATCCATCAATAT+TGG - chr7.3:38264335-38264354 MS.gene84655:intron 35.0%
CTCTGAATTTAACAAAACCG+CGG + chr7.3:38264662-38264681 None:intergenic 35.0%
CTCTGCATGAATTTCTTCAT+TGG - chr7.3:38266883-38266902 MS.gene84655:intron 35.0%
GGTGAGAGAAAAGTAATGAT+AGG + chr7.3:38266645-38266664 None:intergenic 35.0%
GTAATTGCAGATGTTGGAAT+TGG - chr7.3:38264838-38264857 MS.gene84655:intron 35.0%
GTCGATAAGACAAATTCAGA+GGG + chr7.3:38265672-38265691 None:intergenic 35.0%
TAATGGGAACACGTTACTAA+TGG - chr7.3:38267015-38267034 MS.gene84655:intron 35.0%
TCAAACAAACAGGAAGGAAT+CGG - chr7.3:38265925-38265944 MS.gene84655:CDS 35.0%
TCTGAATTTGTCTTATCGAC+AGG - chr7.3:38265672-38265691 MS.gene84655:intron 35.0%
TCTTGCGTAAAAACCCATTT+GGG - chr7.3:38264041-38264060 MS.gene84655:intron 35.0%
TGGTATGAACCCCTTATAAA+AGG + chr7.3:38267228-38267247 None:intergenic 35.0%
TGTATTTGATATTCGCAGAC+AGG - chr7.3:38264933-38264952 MS.gene84655:CDS 35.0%
TGTCAAAGTTAGACTTCAAG+CGG - chr7.3:38265731-38265750 MS.gene84655:CDS 35.0%
TGTCGATAAGACAAATTCAG+AGG + chr7.3:38265673-38265692 None:intergenic 35.0%
TTACACCGTCAATGTTTGTA+TGG - chr7.3:38265374-38265393 MS.gene84655:intron 35.0%
TTGAAGTTGAAGCCTAACTT+TGG + chr7.3:38265234-38265253 None:intergenic 35.0%
! AAAACTGTCATTTGCCCAAA+CGG + chr7.3:38266426-38266445 None:intergenic 35.0%
! CAATATTGATGGATCGACAT+AGG + chr7.3:38264337-38264356 None:intergenic 35.0%
! CACAAATTCCTCCTTATTTG+TGG - chr7.3:38265031-38265050 MS.gene84655:intron 35.0%
! GATTTGCTTCAGTGTTTACA+TGG - chr7.3:38267127-38267146 MS.gene84655:intron 35.0%
! TGTCATTTATCTCGTTCGAT+TGG - chr7.3:38267184-38267203 MS.gene84655:intron 35.0%
!! CAGACCATTTTGAAAATTCC+AGG - chr7.3:38266133-38266152 MS.gene84655:CDS 35.0%
!! GACCTTTAGCCTTTTATAAG+GGG - chr7.3:38267216-38267235 MS.gene84655:intron 35.0%
!! GGACCTTTAGCCTTTTATAA+GGG - chr7.3:38267215-38267234 MS.gene84655:intron 35.0%
!! GTAAAAACCCATTTGGGTTT+TGG - chr7.3:38264047-38264066 MS.gene84655:intron 35.0%
!!! CATGCGGTAAGTCATTTTTT+TGG - chr7.3:38265866-38265885 MS.gene84655:intron 35.0%
!!! GATCGTTTTAAGTTCCGTTT+GGG - chr7.3:38266409-38266428 MS.gene84655:intron 35.0%
!!! TGATCGTTTTAAGTTCCGTT+TGG - chr7.3:38266408-38266427 MS.gene84655:intron 35.0%
AAAGTTAGACTTCAAGCGGA+AGG - chr7.3:38265735-38265754 MS.gene84655:CDS 40.0%
AACAAAATCACATGTCACCG+CGG - chr7.3:38264642-38264661 MS.gene84655:intron 40.0%
AAGTTAGACTTCAAGCGGAA+GGG - chr7.3:38265736-38265755 MS.gene84655:CDS 40.0%
AATTCCGATATCTCATTCGC+TGG - chr7.3:38263893-38263912 MS.gene84655:intron 40.0%
ACACTAGAACAGGTATGAGT+TGG - chr7.3:38267290-38267309 MS.gene84655:intron 40.0%
ATGCATTAAGACTTGGCAAC+AGG + chr7.3:38264547-38264566 None:intergenic 40.0%
ATTCTTGCTGCACTAACAAC+TGG - chr7.3:38265583-38265602 MS.gene84655:intron 40.0%
CACTAGAACAGGTATGAGTT+GGG - chr7.3:38267291-38267310 MS.gene84655:intron 40.0%
CATACCCTTGTATTTAGGCA+AGG + chr7.3:38265285-38265304 None:intergenic 40.0%
CATGTACACAAGAAGGAAGA+TGG + chr7.3:38266530-38266549 None:intergenic 40.0%
CCCATTAGATAGACAAGGAA+GGG + chr7.3:38267002-38267021 None:intergenic 40.0%
CCCTTCCTTGTCTATCTAAT+GGG - chr7.3:38266999-38267018 MS.gene84655:intron 40.0%
CTGAAGCAAATCATGAGTTC+TGG + chr7.3:38267119-38267138 None:intergenic 40.0%
CTGATATGATTACAGCCTAC+AGG - chr7.3:38264740-38264759 MS.gene84655:intron 40.0%
CTTCAAAAGCAAGCTGTATC+TGG - chr7.3:38265248-38265267 MS.gene84655:intron 40.0%
GAATCATGTACTTGTCGTCA+TGG - chr7.3:38266947-38266966 MS.gene84655:intron 40.0%
GCAGGTTAAGTCAAGAATGA+TGG - chr7.3:38266549-38266568 MS.gene84655:intron 40.0%
GGTTCATACCAAATTTCGGA+CGG - chr7.3:38267237-38267256 MS.gene84655:intron 40.0%
GGTTTCTTTGCAGTCTGTAT+TGG - chr7.3:38266202-38266221 MS.gene84655:CDS 40.0%
GTACGTCTCTAGTGTCATAT+CGG - chr7.3:38264272-38264291 MS.gene84655:CDS 40.0%
GTGACCTTGCCTAAATACAA+GGG - chr7.3:38265278-38265297 MS.gene84655:CDS 40.0%
GTGTTCCCATTAGATAGACA+AGG + chr7.3:38267007-38267026 None:intergenic 40.0%
GTTGTCACACATCTTCTTTC+TGG - chr7.3:38266169-38266188 MS.gene84655:CDS 40.0%
TAACCTGCATGTACACAAGA+AGG + chr7.3:38266537-38266556 None:intergenic 40.0%
TAGCATTTCTTGCGACATTC+GGG + chr7.3:38265972-38265991 None:intergenic 40.0%
TAGGGTGTGACAGAAAGTAA+AGG + chr7.3:38267345-38267364 None:intergenic 40.0%
TATGTTGGGAAAGACCATGT+TGG - chr7.3:38265538-38265557 MS.gene84655:CDS 40.0%
TCCCATTAGATAGACAAGGA+AGG + chr7.3:38267003-38267022 None:intergenic 40.0%
TCCCTTCCTTGTCTATCTAA+TGG - chr7.3:38266998-38267017 MS.gene84655:intron 40.0%
TCTGCATCAAACAAACAGGA+AGG - chr7.3:38265919-38265938 MS.gene84655:CDS 40.0%
TGAGCCAATCTCCACAAATA+AGG + chr7.3:38265045-38265064 None:intergenic 40.0%
TGCATTAAGACTTGGCAACA+GGG + chr7.3:38264546-38264565 None:intergenic 40.0%
TTCTTCATTGGGAAATGCAG+TGG - chr7.3:38266895-38266914 MS.gene84655:intron 40.0%
! AATCTAGAGCTCCATGAGAT+AGG + chr7.3:38267364-38267383 None:intergenic 40.0%
! ACACATCTTCTTTCTGGTCT+TGG - chr7.3:38266175-38266194 MS.gene84655:CDS 40.0%
! ATCTAGAGCTCCATGAGATA+GGG + chr7.3:38267363-38267382 None:intergenic 40.0%
! CACATCTTCTTTCTGGTCTT+GGG - chr7.3:38266176-38266195 MS.gene84655:CDS 40.0%
! CCTAAATACAAGGGTATGCT+GGG - chr7.3:38265287-38265306 MS.gene84655:CDS 40.0%
! TCCTCCTTATTTGTGGAGAT+TGG - chr7.3:38265038-38265057 MS.gene84655:intron 40.0%
!! ACATCTTCTTTCTGGTCTTG+GGG - chr7.3:38266177-38266196 MS.gene84655:CDS 40.0%
!! GGGACCTTTAGCCTTTTATA+AGG - chr7.3:38267214-38267233 MS.gene84655:intron 40.0%
!!! ACGGTGTTCTGAAGTGATTT+TGG - chr7.3:38264597-38264616 MS.gene84655:intron 40.0%
AAACATTGACGGTGTAACCC+TGG + chr7.3:38265371-38265390 None:intergenic 45.0%
AACAGTTGGAACCATTGCCA+GGG - chr7.3:38265310-38265329 MS.gene84655:CDS 45.0%
AAGAAGGTCTTTCAGCACTC+TGG - chr7.3:38265333-38265352 MS.gene84655:CDS 45.0%
AAGGAAGGGAACAAGCAGTT+AGG + chr7.3:38266988-38267007 None:intergenic 45.0%
AGACACGGTTGATTACTCAC+AGG + chr7.3:38265425-38265444 None:intergenic 45.0%
AGTGCCAGCGAATGAGATAT+CGG + chr7.3:38263900-38263919 None:intergenic 45.0%
ATACCAAATTTCGGACGGCT+AGG - chr7.3:38267242-38267261 MS.gene84655:intron 45.0%
CACCGTCAATGTTTGTATGG+AGG - chr7.3:38265377-38265396 MS.gene84655:intron 45.0%
CAGCTACGATCAAGTGAAAC+AGG - chr7.3:38266014-38266033 MS.gene84655:intron 45.0%
CCCAGCATACCCTTGTATTT+AGG + chr7.3:38265290-38265309 None:intergenic 45.0%
CTGTTTCACTTGATCGTAGC+TGG + chr7.3:38266016-38266035 None:intergenic 45.0%
CTTCCTTCTTGTGTACATGC+AGG - chr7.3:38266531-38266550 MS.gene84655:intron 45.0%
GCAAGCTGTATCTGGTGATA+CGG - chr7.3:38265256-38265275 MS.gene84655:intron 45.0%
GCCAATCTCCACAAATAAGG+AGG + chr7.3:38265042-38265061 None:intergenic 45.0%
GGTGACCTTGCCTAAATACA+AGG - chr7.3:38265277-38265296 MS.gene84655:CDS 45.0%
TTAAGACTTGGCAACAGGGT+AGG + chr7.3:38264542-38264561 None:intergenic 45.0%
TTCTGTCACACCCTATCTCA+TGG - chr7.3:38267350-38267369 MS.gene84655:intron 45.0%
TTTCTCTGCATGTTTCGCTG+AGG - chr7.3:38263934-38263953 MS.gene84655:intron 45.0%
! GCCTAAATACAAGGGTATGC+TGG - chr7.3:38265286-38265305 MS.gene84655:CDS 45.0%
! TGAATTGACGGCCAGTTTTG+CGG - chr7.3:38264570-38264589 MS.gene84655:intron 45.0%
!! ACATGCAGAGAAAGCACTAC+TGG + chr7.3:38263927-38263946 None:intergenic 45.0%
!! TATTGGCTCTCCAGTTGATG+TGG - chr7.3:38266219-38266238 MS.gene84655:CDS 45.0%
!!! CTCGTTCGATTGGTTTTGCA+GGG - chr7.3:38267194-38267213 MS.gene84655:intron 45.0%
!!! TCTCGTTCGATTGGTTTTGC+AGG - chr7.3:38267193-38267212 MS.gene84655:intron 45.0%
AACGATCCAGTGTATCGCCT+GGG + chr7.3:38265780-38265799 None:intergenic 50.0%
AAGACCTTCTTCCCTGGCAA+TGG + chr7.3:38265324-38265343 None:intergenic 50.0%
ACACCGTGATTCCGCAAAAC+TGG + chr7.3:38264584-38264603 None:intergenic 50.0%
AGGAAGGAATCGGAGCTCTT+TGG - chr7.3:38265935-38265954 MS.gene84655:CDS 50.0%
AGGGAACAAGCAGTTAGGAC+AGG + chr7.3:38266983-38267002 None:intergenic 50.0%
AGGTCTTTCAGCACTCTGGA+AGG - chr7.3:38265337-38265356 MS.gene84655:CDS 50.0%
ATTTCGGACGGCTAGGATCT+TGG - chr7.3:38267249-38267268 MS.gene84655:intron 50.0%
CACTGGACACTGCCAAAGTT+AGG - chr7.3:38265219-38265238 MS.gene84655:intron 50.0%
CAGTGAAGAAGCTCACTAGG+AGG + chr7.3:38266471-38266490 None:intergenic 50.0%
CTAACTTTGGCAGTGTCCAG+TGG + chr7.3:38265221-38265240 None:intergenic 50.0%
CTCACTAGGAGGCAACTGAA+TGG + chr7.3:38266460-38266479 None:intergenic 50.0%
GAACAGTTGGAACCATTGCC+AGG - chr7.3:38265309-38265328 MS.gene84655:CDS 50.0%
GACAGGACAGCCGTGAAAAA+TGG - chr7.3:38264950-38264969 MS.gene84655:intron 50.0%
GATCCTAGCCGTCCGAAATT+TGG + chr7.3:38267248-38267267 None:intergenic 50.0%
GCACAGTGAAGAAGCTCACT+AGG + chr7.3:38266474-38266493 None:intergenic 50.0%
TCTGGAAGGGAATTGTGCCA+GGG - chr7.3:38265351-38265370 MS.gene84655:CDS 50.0%
TGCTGAAAGACCTTCTTCCC+TGG + chr7.3:38265330-38265349 None:intergenic 50.0%
! AAGGGTATGCTGGGAACAGT+TGG - chr7.3:38265296-38265315 MS.gene84655:CDS 50.0%
! GGTCTTTCAGCACTCTGGAA+GGG - chr7.3:38265338-38265357 MS.gene84655:CDS 50.0%
! TGTCTTATCGACAGGTGCTG+TGG - chr7.3:38265680-38265699 MS.gene84655:intron 50.0%
!! GGAGCTCTTTGGACTGGTAT+TGG - chr7.3:38265946-38265965 MS.gene84655:CDS 50.0%
!! GTCATATCGGTGTCAGATGC+TGG - chr7.3:38264285-38264304 MS.gene84655:intron 50.0%
CAACGATCCAGTGTATCGCC+TGG + chr7.3:38265781-38265800 None:intergenic 55.0%
CCATGTTGGAGATGCTCCCT+TGG - chr7.3:38265552-38265571 MS.gene84655:CDS 55.0%
GGAACCATTGCCAGGGAAGA+AGG - chr7.3:38265317-38265336 MS.gene84655:CDS 55.0%
GGAATCGGAGCTCTTTGGAC+TGG - chr7.3:38265940-38265959 MS.gene84655:CDS 55.0%
! CGGCCAGTTTTGCGGAATCA+CGG - chr7.3:38264578-38264597 MS.gene84655:intron 55.0%
! CTCTGGAAGGGAATTGTGCC+AGG - chr7.3:38265350-38265369 MS.gene84655:CDS 55.0%
! GACAGGTGCTGTGGCAATTG+CGG - chr7.3:38265689-38265708 MS.gene84655:CDS 55.0%
!! CCAAGGGAGCATCTCCAACA+TGG + chr7.3:38265555-38265574 None:intergenic 55.0%
!! CTTCTTTCTGGTCTTGGGGC+AGG - chr7.3:38266181-38266200 MS.gene84655:CDS 55.0%
GCGGAAGGGAAATTGCCTCC+AGG - chr7.3:38265750-38265769 MS.gene84655:CDS 60.0%
! AGGTGCTGTGGCAATTGCGG+TGG - chr7.3:38265692-38265711 MS.gene84655:CDS 60.0%
AATTGCCTCCAGGCGTGCCC+AGG - chr7.3:38265760-38265779 MS.gene84655:CDS 65.0%
GGCGTGCCCAGGCGATACAC+TGG - chr7.3:38265771-38265790 MS.gene84655:CDS 70.0%
GTGTATCGCCTGGGCACGCC+TGG + chr7.3:38265771-38265790 None:intergenic 70.0%
TATCGCCTGGGCACGCCTGG+AGG + chr7.3:38265768-38265787 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38263872 38267637 38263872 ID=MS.gene84655
chr7.3 mRNA 38263872 38267637 38263872 ID=MS.gene84655.t1;Parent=MS.gene84655
chr7.3 exon 38267554 38267637 38267554 ID=MS.gene84655.t1.exon1;Parent=MS.gene84655.t1
chr7.3 CDS 38267554 38267637 38267554 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38266085 38266303 38266085 ID=MS.gene84655.t1.exon2;Parent=MS.gene84655.t1
chr7.3 CDS 38266085 38266303 38266085 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38265905 38265983 38265905 ID=MS.gene84655.t1.exon3;Parent=MS.gene84655.t1
chr7.3 CDS 38265905 38265983 38265905 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38265682 38265815 38265682 ID=MS.gene84655.t1.exon4;Parent=MS.gene84655.t1
chr7.3 CDS 38265682 38265815 38265682 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38265474 38265572 38265474 ID=MS.gene84655.t1.exon5;Parent=MS.gene84655.t1
chr7.3 CDS 38265474 38265572 38265474 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38265269 38265373 38265269 ID=MS.gene84655.t1.exon6;Parent=MS.gene84655.t1
chr7.3 CDS 38265269 38265373 38265269 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38264882 38264956 38264882 ID=MS.gene84655.t1.exon7;Parent=MS.gene84655.t1
chr7.3 CDS 38264882 38264956 38264882 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38264208 38264294 38264208 ID=MS.gene84655.t1.exon8;Parent=MS.gene84655.t1
chr7.3 CDS 38264208 38264294 38264208 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
chr7.3 exon 38263872 38263907 38263872 ID=MS.gene84655.t1.exon9;Parent=MS.gene84655.t1
chr7.3 CDS 38263872 38263907 38263872 ID=cds.MS.gene84655.t1;Parent=MS.gene84655.t1
Gene Sequence

>MS.gene84655

ATGGTGGGAGGTGGTAACGCGAATTCCGATATCTCATTCGCTGGCACTTTCGCCAGTAGTGCTTTCTCTGCATGTTTCGCTGAGGTATGCATGTCGCTGTATATAACCTTTTCTTCGTAAATTTTCATCTGGGTTTTCGTTATTTTTCGATTCTCTTTTTTGTGTGTGATCTTGCGTAAAAACCCATTTGGGTTTTGGGATTATATACACTATTGATTTTTGTTATGTAATAATGGATCATGCTTAATTGCAATGTGTTAACTGTAATAGACTTTGTTTTATGTATTTTTATAAGTTTTTGTGTTTGTGATTTTGTTGTGGCATACCATCCATACATAACACTCATAACACTGACACGTCGACGCTGATAATAATTTGAGAAAAATAAGTAAATGTAATTGTACGTCTCTAGTGTCATATCGGTGTCAGATGCTGGATACGTCTTTGATCTGAATTGTCAAACCTATGTCGATCCATCAATATTGGAGCTGAAAATTGAAAGATCAAGTGAATATGAATTTTTGTTGTTGTGTAATTCGTACGTTTTTTGTTTTTTTTTTTATACTATTATCCTTTTGGTTGGTTAGAACTAAATTGAATGTGAGTTGGTGTGTAAATCTGTTTTGTGATCAAATAGGATTTTTCATGTTGGTTGGTTCAATTTGTGCCTACCCTGTTGCCAAGTCTTAATGCATGTTTGAATTGACGGCCAGTTTTGCGGAATCACGGTGTTCTGAAGTGATTTTGGCAAAAACTAAATTTTAATCTTCAACAAAATCACATGTCACCGCGGTTTTGTTAAATTCAGAGTCATTTTTTAGATGTCATTTATTGAACATTTATTTGAGGAAATTATATGTTCAATGCTCTGATATGATTACAGCCTACAGGCATTTGATTTATAATCATTGTTGTTTATTTTTCAAGACTTGACATGGATTACGATCATTCTATGTTCAATGATTTGTAATTGCAGATGTTGGAATTGGATATTTGGCATAAACTGATTGTTATGTTGAAAGTCTTAATTGTGTGTACGGCTAGAAAAATTCTGAAAATGTTGTATTTGATATTCGCAGACAGGACAGCCGTGAAAAATGGCATAATGATTGAATAGTTTTGCATCAATTATCAAATTTGAATCAGCTATTGGTTTGTTCACAAATTCCTCCTTATTTGTGGAGATTGGCTCAGCTTGTCATATGTTAACTACGCTGTTTTTTGGCATGTTCTGTTCACTTGTTAGATGTCGTGTCATAGTGTGTTTAGTCTTTTACAAGAACCCGGTCATAGCATATAATGAAATTATATCTTCAAATTTATCTTTGAAATAGATATGTACTATTCCACTGGACACTGCCAAAGTTAGGCTTCAACTTCAAAAGCAAGCTGTATCTGGTGATACGGTGACCTTGCCTAAATACAAGGGTATGCTGGGAACAGTTGGAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGAATTGTGCCAGGGTTACACCGTCAATGTTTGTATGGAGGATTAAGAATTGGGTTATATGAGCCTGTGAGTAATCAACCGTGTCTCGAAGATTGTTCATTTGTTTGAGTTCATATCTACTTTTTGCATATGCAATCTGATGTGTTAATTACTTTGGAATTGAACAGGTTAAGAATTTGTATGTTGGGAAAGACCATGTTGGAGATGCTCCCTTGGCAAAAAAAATTCTTGCTGCACTAACAACTGGTAATTAATCCCATTACGTTTCTTCTAAAACTCTCGATATGTAATGCAAAATTATGATATTGAACCCTCTGAATTTGTCTTATCGACAGGTGCTGTGGCAATTGCGGTGGCAAATCCTACTGATCTTGTCAAAGTTAGACTTCAAGCGGAAGGGAAATTGCCTCCAGGCGTGCCCAGGCGATACACTGGATCGTTGAATGCATATTCAACAATTGTGAGACAGGTATACTCCTTTAACCTTCTATGGTTTTTGAAAGATAACATGCGGTAAGTCATTTTTTTGGCTCTAAACTTGTACTAATAAGTTTTGCTAATCTGCATCAAACAAACAGGAAGGAATCGGAGCTCTTTGGACTGGTATTGGCCCGAATGTCGCAAGAAATGCTATCATTAACGCTGCTGAGCTAGCCAGCTACGATCAAGTGAAACAGGTAATGTGAAAGATACTAAACTGCATTTTCGATTAAAATTTTGTTATTATTTCTCTTTCATAATTTTAATAACCTGATCTTTTTTACTTTTTTACTGCAGACCATTTTGAAAATTCCAGGATTCACTGATAATGTTGTCACACATCTTCTTTCTGGTCTTGGGGCAGGTTTCTTTGCAGTCTGTATTGGCTCTCCAGTTGATGTGGTAATTTATTGGTGTTTACTTGTGAATATTTGATTGGAAACTTTTTATTGTCTCATCATTTTATATATAGTGTGTTGATTAGTTTATATACTACCATTCATTTTAAGTTTTGTACTTCAATTGGACATCTAATGCTATGCTTCATATAAATAAAAAAAATTGACAGCTGATCGTTTTAAGTTCCGTTTGGGCAAATGACAGTTTTTTTTTCTATCGCCATTCAGTTGCCTCCTAGTGAGCTTCTTCACTGTGCAGTCAGCCTTATCATTTCCCTGATTAAATTATTCCATCTTCCTTCTTGTGTACATGCAGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAAAAGCACCATTGATTGTTTCGTCAAAACATTAAAAAATGATGTATGGTTTTTTCTCCTATCATTACTTTTCTCTCACCCTATTTTTCTTTAGTTTTAAGCATTAATTGTATGTGAATAAAATGCTTCGCAAATTTGATGTTATCTAGTTTTAAGCTTAGTGTATGTGAGTTGAAAAACTTTCTTGTGACTTTTCAGCTTTTATGACACCTTTACACATTCTCATTTCTCATGCTTGCTTATATGCCAAAACATAACTGATCAAGTTCATTTCTATGTTGCATATTATGCCCTTTTTCTCTGCATGAATTTCTTCATTGGGAAATGCAGTGGAAGTTGTCCAAGAATTTTTCATTATTATTGAATCATGTACTTGTCGTCATGGATTTAAATCACCTGTCCTAACTGCTTGTTCCCTTCCTTGTCTATCTAATGGGAACACGTTACTAATGGATTTTCTTTTTTCTTAAACAGTAACATTTGCTATCTTAGTTGTTACATTTTTATGTTTTAATTGTAGAAATATTAAAACCAGAACTCATGATTTGCTTCAGTGTTTACATGGCTTGTATTCTATTTTGTGTGAATTTTGTCAGTTGTGTCATTTATCTCGTTCGATTGGTTTTGCAGGGACCTTTAGCCTTTTATAAGGGGTTCATACCAAATTTCGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACACTAGAACAGGTATGAGTTGGGTACTTTGTGATAGCTTTCGAGTCATCATCCTTTACTTTCTGTCACACCCTATCTCATGGAGCTCTAGATTATTTTATAGTATATACTTGTTTGCTGTAGCAGAGTTCAGAAAATCCAAAATTTGCAAAAACAATTTTTGTGATTAGTATCAAGATGACTTGAAAAGAAAATATTTTAAATGAAACTGTTGTTATGAATGTACACAAGCATGATGACATTTGAGTGTTGATTGACTATGTTCTTACATACATTAATTTTGTTGTTTTCTTTCTTCTTTTTTTGATACAGACTAAAAAGTTCTTCAAGAAATTGGAATCAGCCTGA

Protein sequence

>MS.gene84655.t1

MVGGGNANSDISFAGTFASSAFSACFAEICTIPLDTAKVRLQLQKQAVSGDTVTLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKNLYVGKDHVGDAPLAKKILAALTTGAVAIAVANPTDLVKVRLQAEGKLPPGVPRRYTGSLNAYSTIVRQEGIGALWTGIGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFFAVCIGSPVDVVKSRMMGDSSYKSTIDCFVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQTKKFFKKLESA