Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53384.t1 | XP_003629745.1 | 99 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 7.30E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53384.t1 | Q9C5M0 | 83.2 | 298 | 48 | 1 | 4 | 301 | 3 | 298 | 2.4e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53384.t1 | G7LIP6 | 99.0 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 5.2e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055634 | MS.gene53384 | 0.81659 | 5.11E-52 | -1.69E-46 |
| MS.gene056898 | MS.gene53384 | 0.814109 | 1.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048336 | MS.gene53384 | PPI |
| MS.gene005651 | MS.gene53384 | PPI |
| MS.gene44265 | MS.gene53384 | PPI |
| MS.gene86246 | MS.gene53384 | PPI |
| MS.gene53384 | MS.gene07162 | PPI |
| MS.gene027755 | MS.gene53384 | PPI |
| MS.gene20684 | MS.gene53384 | PPI |
| MS.gene87922 | MS.gene53384 | PPI |
| MS.gene53384 | MS.gene99446 | PPI |
| MS.gene21371 | MS.gene53384 | PPI |
| MS.gene065200 | MS.gene53384 | PPI |
| MS.gene008904 | MS.gene53384 | PPI |
| MS.gene84655 | MS.gene53384 | PPI |
| MS.gene73296 | MS.gene53384 | PPI |
| MS.gene001110 | MS.gene53384 | PPI |
| MS.gene21596 | MS.gene53384 | PPI |
| MS.gene47310 | MS.gene53384 | PPI |
| MS.gene03010 | MS.gene53384 | PPI |
| MS.gene005718 | MS.gene53384 | PPI |
| MS.gene90775 | MS.gene53384 | PPI |
| MS.gene037607 | MS.gene53384 | PPI |
| MS.gene49818 | MS.gene53384 | PPI |
| MS.gene53384 | MS.gene010661 | PPI |
| MS.gene29137 | MS.gene53384 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53384.t1 | MTR_8g086070 | 99.003 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 0.0 | 612 |
| MS.gene53384.t1 | MTR_8g086070 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 1.92e-151 | 422 |
| MS.gene53384.t1 | MTR_5g032420 | 37.963 | 324 | 155 | 4 | 18 | 299 | 3 | 322 | 4.41e-64 | 204 |
| MS.gene53384.t1 | MTR_8g068890 | 39.062 | 320 | 150 | 6 | 18 | 299 | 3 | 315 | 2.40e-61 | 197 |
| MS.gene53384.t1 | MTR_3g100570 | 37.421 | 318 | 156 | 6 | 18 | 299 | 3 | 313 | 1.19e-60 | 196 |
| MS.gene53384.t1 | MTR_7g066690 | 33.000 | 300 | 166 | 6 | 21 | 297 | 13 | 300 | 2.02e-40 | 143 |
| MS.gene53384.t1 | MTR_7g066690 | 25.128 | 195 | 125 | 4 | 16 | 199 | 116 | 300 | 2.29e-11 | 63.9 |
| MS.gene53384.t1 | MTR_4g018750 | 32.441 | 299 | 178 | 5 | 14 | 298 | 11 | 299 | 9.24e-40 | 141 |
| MS.gene53384.t1 | MTR_1g090330 | 33.333 | 279 | 174 | 5 | 27 | 295 | 20 | 296 | 1.18e-39 | 140 |
| MS.gene53384.t1 | MTR_8g086120 | 59.016 | 122 | 45 | 2 | 162 | 283 | 9 | 125 | 1.56e-39 | 137 |
| MS.gene53384.t1 | MTR_4g018750 | 31.293 | 294 | 170 | 8 | 14 | 291 | 11 | 288 | 1.03e-33 | 125 |
| MS.gene53384.t1 | MTR_8g086430 | 55.435 | 92 | 40 | 1 | 207 | 298 | 1 | 91 | 4.18e-28 | 106 |
| MS.gene53384.t1 | MTR_1g088995 | 28.920 | 287 | 179 | 8 | 21 | 295 | 33 | 306 | 9.05e-27 | 107 |
| MS.gene53384.t1 | MTR_3g462140 | 28.417 | 278 | 176 | 4 | 33 | 295 | 28 | 297 | 1.73e-24 | 100 |
| MS.gene53384.t1 | MTR_3g462140 | 28.409 | 176 | 107 | 4 | 34 | 199 | 133 | 299 | 7.03e-13 | 68.2 |
| MS.gene53384.t1 | MTR_8g086420 | 75.000 | 56 | 14 | 0 | 207 | 262 | 1 | 56 | 6.13e-22 | 87.4 |
| MS.gene53384.t1 | MTR_4g057850 | 26.936 | 297 | 199 | 10 | 17 | 299 | 15 | 307 | 4.95e-20 | 88.6 |
| MS.gene53384.t1 | MTR_4g012850 | 26.718 | 262 | 175 | 6 | 14 | 263 | 3 | 259 | 5.67e-20 | 88.6 |
| MS.gene53384.t1 | MTR_8g086160 | 54.667 | 75 | 26 | 2 | 216 | 289 | 32 | 99 | 5.75e-20 | 83.6 |
| MS.gene53384.t1 | MTR_1g088995 | 30.457 | 197 | 114 | 6 | 21 | 206 | 33 | 217 | 8.12e-15 | 72.8 |
| MS.gene53384.t1 | MTR_7g109135 | 22.819 | 298 | 197 | 8 | 23 | 299 | 24 | 309 | 2.62e-14 | 72.4 |
| MS.gene53384.t1 | MTR_7g084400 | 24.913 | 289 | 184 | 7 | 21 | 294 | 213 | 483 | 4.45e-14 | 72.8 |
| MS.gene53384.t1 | MTR_8g086080 | 39.796 | 98 | 49 | 2 | 190 | 285 | 63 | 152 | 2.53e-13 | 67.4 |
| MS.gene53384.t1 | MTR_2g102010 | 27.143 | 280 | 184 | 8 | 19 | 288 | 15 | 284 | 4.26e-13 | 68.9 |
| MS.gene53384.t1 | MTR_7g109135 | 22.789 | 294 | 195 | 8 | 23 | 299 | 24 | 302 | 4.89e-13 | 68.9 |
| MS.gene53384.t1 | MTR_3g098460 | 32.934 | 167 | 98 | 6 | 24 | 181 | 302 | 463 | 9.09e-13 | 68.6 |
| MS.gene53384.t1 | MTR_3g098460 | 23.592 | 284 | 201 | 8 | 19 | 294 | 203 | 478 | 1.10e-12 | 68.6 |
| MS.gene53384.t1 | MTR_6g034515 | 26.108 | 203 | 131 | 4 | 20 | 210 | 159 | 354 | 1.22e-12 | 67.8 |
| MS.gene53384.t1 | MTR_5g009500 | 21.104 | 308 | 212 | 5 | 8 | 287 | 25 | 329 | 7.53e-12 | 65.5 |
| MS.gene53384.t1 | MTR_8g098240 | 26.455 | 189 | 120 | 6 | 22 | 204 | 414 | 589 | 2.49e-11 | 64.7 |
| MS.gene53384.t1 | MTR_1g087840 | 24.555 | 281 | 177 | 11 | 37 | 295 | 35 | 302 | 4.51e-11 | 62.8 |
| MS.gene53384.t1 | MTR_3g107510 | 25.926 | 162 | 114 | 2 | 21 | 179 | 216 | 374 | 6.81e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53384.t1 | AT5G19760 | 83.056 | 301 | 48 | 2 | 1 | 301 | 1 | 298 | 0.0 | 524 |
| MS.gene53384.t1 | AT4G24570 | 38.871 | 319 | 150 | 7 | 18 | 299 | 3 | 313 | 4.41e-63 | 202 |
| MS.gene53384.t1 | AT2G22500 | 38.291 | 316 | 154 | 7 | 18 | 299 | 3 | 311 | 1.91e-56 | 185 |
| MS.gene53384.t1 | AT5G09470 | 37.591 | 274 | 157 | 5 | 33 | 298 | 67 | 334 | 1.34e-48 | 165 |
| MS.gene53384.t1 | AT1G14140 | 35.034 | 294 | 172 | 7 | 16 | 295 | 11 | 299 | 2.66e-41 | 145 |
| MS.gene53384.t1 | AT5G58970 | 30.976 | 297 | 174 | 5 | 18 | 295 | 13 | 297 | 5.21e-40 | 142 |
| MS.gene53384.t1 | AT5G58970 | 26.596 | 188 | 107 | 5 | 27 | 198 | 126 | 298 | 9.72e-12 | 65.1 |
| MS.gene53384.t1 | AT3G54110 | 34.420 | 276 | 161 | 6 | 32 | 294 | 27 | 295 | 1.04e-39 | 141 |
| MS.gene53384.t1 | AT4G03115 | 30.492 | 305 | 188 | 10 | 2 | 295 | 17 | 308 | 1.20e-31 | 120 |
| MS.gene53384.t1 | AT5G58970 | 31.120 | 241 | 142 | 4 | 18 | 239 | 13 | 248 | 1.50e-31 | 119 |
| MS.gene53384.t1 | AT4G03115 | 30.492 | 305 | 188 | 10 | 2 | 295 | 49 | 340 | 2.14e-31 | 120 |
| MS.gene53384.t1 | AT4G03115 | 29.707 | 239 | 153 | 6 | 59 | 295 | 12 | 237 | 5.67e-25 | 100 |
| MS.gene53384.t1 | AT4G03115 | 29.707 | 239 | 153 | 6 | 59 | 295 | 20 | 245 | 7.58e-25 | 100 |
| MS.gene53384.t1 | AT5G01340 | 27.817 | 284 | 192 | 7 | 22 | 295 | 18 | 298 | 1.81e-22 | 95.5 |
| MS.gene53384.t1 | AT4G03115 | 32.558 | 215 | 123 | 8 | 2 | 206 | 17 | 219 | 3.20e-19 | 84.7 |
| MS.gene53384.t1 | AT4G03115 | 32.558 | 215 | 123 | 8 | 2 | 206 | 17 | 219 | 3.33e-19 | 84.7 |
| MS.gene53384.t1 | AT4G32400 | 21.951 | 287 | 206 | 7 | 16 | 295 | 109 | 384 | 9.45e-15 | 74.3 |
| MS.gene53384.t1 | AT5G51050 | 30.526 | 190 | 107 | 6 | 1 | 181 | 305 | 478 | 3.81e-13 | 70.1 |
| MS.gene53384.t1 | AT5G07320 | 30.120 | 166 | 99 | 6 | 24 | 181 | 303 | 459 | 6.55e-13 | 69.3 |
| MS.gene53384.t1 | AT5G46800 | 28.873 | 284 | 174 | 8 | 19 | 280 | 6 | 283 | 1.15e-12 | 67.8 |
| MS.gene53384.t1 | AT5G46800 | 28.873 | 284 | 174 | 8 | 19 | 280 | 6 | 283 | 1.15e-12 | 67.8 |
| MS.gene53384.t1 | AT5G46800 | 28.873 | 284 | 174 | 8 | 19 | 280 | 6 | 283 | 1.15e-12 | 67.8 |
| MS.gene53384.t1 | AT5G42130 | 26.316 | 171 | 121 | 3 | 15 | 180 | 205 | 375 | 5.52e-11 | 63.2 |
Find 89 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGTTGCTGCTGGTTTC+TGG | 0.111154 | 4.1:+13878518 | MS.gene53384:CDS |
| CCTCAACCAGCTCCAGAAAT+TGG | 0.196597 | 4.1:+13882884 | MS.gene53384:CDS |
| GGAGAAAAGTTATGGGTTAT+AGG | 0.255079 | 4.1:+13882905 | MS.gene53384:CDS |
| TTCGTCAATGGTGGTGCTTC+TGG | 0.275917 | 4.1:+13878556 | MS.gene53384:CDS |
| TTAGGTGCAAGTAGTGTATC+TGG | 0.278521 | 4.1:+13882540 | MS.gene53384:intron |
| CAGAAATTGGAGAAAAGTTA+TGG | 0.301655 | 4.1:+13882897 | MS.gene53384:CDS |
| TTCTTGCAGGGTCTATCAGC+TGG | 0.316238 | 4.1:+13879113 | MS.gene53384:intron |
| AGTTGGTAGTCCAGCTGATT+TGG | 0.324876 | 4.1:+13879580 | MS.gene53384:CDS |
| CTTTCACTGTGGAAAGGTGC+TGG | 0.335848 | 4.1:+13879707 | MS.gene53384:CDS |
| GGGCTGACTGCTGGTGCAAT+TGG | 0.358637 | 4.1:+13879551 | MS.gene53384:CDS |
| AAACTACACAAACGCCTTCC+AGG | 0.363434 | 4.1:+13879652 | MS.gene53384:CDS |
| GGGTGTTGGTGCTTTCTATA+AGG | 0.363669 | 4.1:+13878793 | MS.gene53384:CDS |
| CTGCACGCCTTGGAACATTT+AGG | 0.364412 | 4.1:+13879162 | MS.gene53384:CDS |
| TGGCAGGGGCTTGCCATCAT+TGG | 0.380343 | 4.1:-13879507 | None:intergenic |
| GGAAGGCGTTTGTGTAGTTT+CGG | 0.380503 | 4.1:-13879649 | None:intergenic |
| CCAATTTCTGGAGCTGGTTG+AGG | 0.389193 | 4.1:-13882884 | None:intergenic |
| AATTCAGGTTAGGATTCAAC+TGG | 0.396885 | 4.1:+13878724 | MS.gene53384:intron |
| GAAGGGTCCTCCAGATTTGA+AGG | 0.417928 | 4.1:-13882682 | None:intergenic |
| AGAAATTGGAGAAAAGTTAT+GGG | 0.426080 | 4.1:+13882898 | MS.gene53384:CDS |
| ACCATTGACGAAAGGCTTGA+TGG | 0.428395 | 4.1:-13878545 | None:intergenic |
| GCTGTCAAGACCTTCAAATC+TGG | 0.432966 | 4.1:+13882672 | MS.gene53384:CDS |
| CAGTCAAGAGAGCCGGTGTA+TGG | 0.437255 | 4.1:-13882648 | None:intergenic |
| GGCCAGAAACCAGCAGCAAC+AGG | 0.443267 | 4.1:-13878520 | None:intergenic |
| CATACCTTGATCATATCAAT+AGG | 0.451587 | 4.1:-13878604 | None:intergenic |
| TGAGTCTTCACATAATCAAA+TGG | 0.453835 | 4.1:-13882588 | None:intergenic |
| TACCGTATCGGTGCAGATGA+AGG | 0.455491 | 4.1:+13879680 | MS.gene53384:CDS |
| ACCATCAAGCCTTTCGTCAA+TGG | 0.457555 | 4.1:+13878544 | MS.gene53384:CDS |
| CACCGATACGGTAAAGTGCC+TGG | 0.473291 | 4.1:-13879670 | None:intergenic |
| TCAAAGTGTTGAGTTCTTCA+AGG | 0.476440 | 4.1:+13879784 | MS.gene53384:CDS |
| TTCAAGGATACCGTTGGTCT+AGG | 0.476717 | 4.1:+13879800 | MS.gene53384:CDS |
| GTCTATCAGCTGGGTTACTC+AGG | 0.478134 | 4.1:+13879123 | MS.gene53384:CDS |
| GATTCCCTGTCTACTGTGTC+AGG | 0.479793 | 4.1:+13882718 | MS.gene53384:CDS |
| TTTCACTGTGGAAAGGTGCT+GGG | 0.480851 | 4.1:+13879708 | MS.gene53384:CDS |
| TCAACCTATTGATATGATCA+AGG | 0.487786 | 4.1:+13878600 | MS.gene53384:CDS |
| AAGCCTAAGCCTGTTGCTGC+TGG | 0.491227 | 4.1:+13878511 | MS.gene53384:CDS |
| TTCTACCATGCTTAAGAATG+AGG | 0.497892 | 4.1:+13878772 | MS.gene53384:CDS |
| CTTGACAAATAAAGCAATTG+AGG | 0.499499 | 4.1:+13879484 | MS.gene53384:CDS |
| ACTTACACCACTGCACGCCT+TGG | 0.499902 | 4.1:+13879152 | MS.gene53384:CDS |
| TTTGGCACTCATTCGTATGC+AGG | 0.500271 | 4.1:+13879598 | MS.gene53384:CDS |
| GACACAGTAGACAGGGAATC+CGG | 0.501193 | 4.1:-13882715 | None:intergenic |
| AAGAGCCATGGCATTGAACA+TGG | 0.503929 | 4.1:+13879742 | MS.gene53384:CDS |
| GAATCCGGTGTAAAATTTGA+AGG | 0.507310 | 4.1:-13882700 | None:intergenic |
| GCAATCCTGACACAGTAGAC+AGG | 0.508794 | 4.1:-13882723 | None:intergenic |
| ATCAGCTGGGTTACTCAGGC+AGG | 0.514032 | 4.1:+13879127 | MS.gene53384:CDS |
| GCTCTATGTGGGCTGACTGC+TGG | 0.520808 | 4.1:+13879542 | MS.gene53384:CDS |
| CGAATGAGTGCCAAATCAGC+TGG | 0.523817 | 4.1:-13879590 | None:intergenic |
| AAAGCAATTGAGGCCAATGA+TGG | 0.524756 | 4.1:+13879494 | MS.gene53384:CDS |
| TTCCAGGCACTTTACCGTAT+CGG | 0.534625 | 4.1:+13879668 | MS.gene53384:CDS |
| TCTTGCAGGGTCTATCAGCT+GGG | 0.537823 | 4.1:+13879114 | MS.gene53384:intron |
| CAGGATTGCTCCCCATGTCA+TGG | 0.543518 | 4.1:+13882737 | MS.gene53384:CDS |
| TCCCTTCATCTGCACCGATA+CGG | 0.543890 | 4.1:-13879682 | None:intergenic |
| ACCGTATCGGTGCAGATGAA+GGG | 0.548027 | 4.1:+13879681 | MS.gene53384:CDS |
| AAACCAGCAGCAACAGGCTT+AGG | 0.550180 | 4.1:-13878514 | None:intergenic |
| TTGACGAAAGGCTTGATGGT+TGG | 0.552826 | 4.1:-13878541 | None:intergenic |
| CATCCCCATGTTCAATGCCA+TGG | 0.555090 | 4.1:-13879747 | None:intergenic |
| ACTGCTTATGGCAGATGACA+TGG | 0.559975 | 4.1:+13882856 | MS.gene53384:intron |
| GTTAGGATTCAACTGGGTCA+AGG | 0.566704 | 4.1:+13878731 | MS.gene53384:CDS |
| GAGTTCTTCAAGGATACCGT+TGG | 0.572249 | 4.1:+13879794 | MS.gene53384:CDS |
| GACAGCACAGTCAAGAGAGC+CGG | 0.574269 | 4.1:-13882655 | None:intergenic |
| AAAGATGCAACCTGATGCTG+AGG | 0.582204 | 4.1:+13882617 | MS.gene53384:CDS |
| TAGTTTCGGCGCTGAGCAAG+AGG | 0.584237 | 4.1:-13879635 | None:intergenic |
| ATCAATAGGTTGAATAACAC+AGG | 0.588855 | 4.1:-13878590 | None:intergenic |
| GGGATTCTTTCACTGTGGAA+AGG | 0.593663 | 4.1:+13879701 | MS.gene53384:CDS |
| AACACCCTCATTCTTAAGCA+TGG | 0.601421 | 4.1:-13878777 | None:intergenic |
| GTCAAGACCTTCAAATCTGG+AGG | 0.605904 | 4.1:+13882675 | MS.gene53384:CDS |
| AAGAGAATAGTACCATGACA+TGG | 0.606457 | 4.1:-13882749 | None:intergenic |
| AGAGCCATGGCATTGAACAT+GGG | 0.610100 | 4.1:+13879743 | MS.gene53384:CDS |
| AAATGTTCCAAGGCGTGCAG+TGG | 0.610327 | 4.1:-13879159 | None:intergenic |
| GAGCCATGGCATTGAACATG+GGG | 0.612866 | 4.1:+13879744 | MS.gene53384:CDS |
| ATCAAGCCTTTCGTCAATGG+TGG | 0.613468 | 4.1:+13878547 | MS.gene53384:CDS |
| AGAGAATAGTACCATGACAT+GGG | 0.614065 | 4.1:-13882748 | None:intergenic |
| TCTACCATGCTTAAGAATGA+GGG | 0.614254 | 4.1:+13878773 | MS.gene53384:CDS |
| AATCCGGTGTAAAATTTGAA+GGG | 0.616204 | 4.1:-13882699 | None:intergenic |
| CAATCCTGACACAGTAGACA+GGG | 0.622100 | 4.1:-13882722 | None:intergenic |
| CAACTCACCTAAATGTTCCA+AGG | 0.622902 | 4.1:-13879169 | None:intergenic |
| ATGAAGGGATTCTTTCACTG+TGG | 0.628478 | 4.1:+13879696 | MS.gene53384:CDS |
| GGTGAAATGACTACTGTGGT+TGG | 0.629754 | 4.1:+13879821 | MS.gene53384:CDS |
| GATACGGTAAAGTGCCTGGA+AGG | 0.630447 | 4.1:-13879666 | None:intergenic |
| GCCATGGCTCTTACTACAGT+AGG | 0.638558 | 4.1:-13879731 | None:intergenic |
| GCCTACTGTAGTAAGAGCCA+TGG | 0.642788 | 4.1:+13879730 | MS.gene53384:CDS |
| GGTGCAATTGGAGCAACAGT+TGG | 0.654003 | 4.1:+13879563 | MS.gene53384:CDS |
| GAAGCACCACCATTGACGAA+AGG | 0.656464 | 4.1:-13878553 | None:intergenic |
| ATTCAGGTTAGGATTCAACT+GGG | 0.656898 | 4.1:+13878725 | MS.gene53384:intron |
| GAGGGAAAATATCCATACAC+CGG | 0.660454 | 4.1:+13882636 | MS.gene53384:CDS |
| AGTCATTTCACCTAGACCAA+CGG | 0.665426 | 4.1:-13879810 | None:intergenic |
| ATGCTTAAGAATGAGGGTGT+TGG | 0.674370 | 4.1:+13878779 | MS.gene53384:CDS |
| GAGAATAGTACCATGACATG+GGG | 0.680357 | 4.1:-13882747 | None:intergenic |
| AAGATGCAACCTGATGCTGA+GGG | 0.680874 | 4.1:+13882618 | MS.gene53384:CDS |
| TCTAGGTGAAATGACTACTG+TGG | 0.723327 | 4.1:+13879817 | MS.gene53384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAAAAGAT+AGG | - | chr4.1:13881874-13881893 | None:intergenic | 10.0% |
| !!! | ATAAATTCATTTTTTTTAAC+TGG | + | chr4.1:13881681-13881700 | MS.gene53384:intron | 10.0% |
| !!! | CTAATTTATTCTTTTATAAA+AGG | - | chr4.1:13880177-13880196 | None:intergenic | 10.0% |
| !!! | TAAATTCATTTTTTTTAACT+GGG | + | chr4.1:13881682-13881701 | MS.gene53384:intron | 10.0% |
| !!! | TTTTTTTATATTGTTTACTT+TGG | + | chr4.1:13879004-13879023 | MS.gene53384:intron | 10.0% |
| !! | TTCTGTTATCTATTAAAAAA+AGG | - | chr4.1:13880665-13880684 | None:intergenic | 15.0% |
| !!! | AATTAGTCAAACTTTTTATT+AGG | + | chr4.1:13880191-13880210 | MS.gene53384:intron | 15.0% |
| !!! | TTAATTTCAATTTTGTAACT+TGG | + | chr4.1:13881278-13881297 | MS.gene53384:intron | 15.0% |
| !! | AAACTAACAACAGTATATTA+TGG | + | chr4.1:13880422-13880441 | MS.gene53384:intron | 20.0% |
| !! | AAATCTAATATTGGATGATA+AGG | + | chr4.1:13880592-13880611 | MS.gene53384:intron | 20.0% |
| !! | AACATTTCCCTTTATAAAAA+GGG | - | chr4.1:13879981-13880000 | None:intergenic | 20.0% |
| !! | AACTAACAACAGTATATTAT+GGG | + | chr4.1:13880423-13880442 | MS.gene53384:intron | 20.0% |
| !! | AATCTAATATTGGATGATAA+GGG | + | chr4.1:13880593-13880612 | MS.gene53384:intron | 20.0% |
| !! | ATTGCAATATTCATCAAAAT+TGG | + | chr4.1:13879204-13879223 | MS.gene53384:intron | 20.0% |
| !! | ATTTATTGAGTCATTGTATT+TGG | + | chr4.1:13879034-13879053 | MS.gene53384:intron | 20.0% |
| !! | ATTTGATATGATGAATAAAG+GGG | - | chr4.1:13880749-13880768 | None:intergenic | 20.0% |
| !! | CATTTGATATGATGAATAAA+GGG | - | chr4.1:13880750-13880769 | None:intergenic | 20.0% |
| !! | GTGAAATTATAGTTTGATTA+AGG | - | chr4.1:13882081-13882100 | None:intergenic | 20.0% |
| !! | TAAAAACACAATGTAATTGT+AGG | - | chr4.1:13879310-13879329 | None:intergenic | 20.0% |
| !! | TAAAGGTAGAAAAAAAATCT+TGG | + | chr4.1:13880034-13880053 | MS.gene53384:intron | 20.0% |
| !! | TAACATTTCCCTTTATAAAA+AGG | - | chr4.1:13879982-13880001 | None:intergenic | 20.0% |
| !! | TATTGTATTTACTAGCTAAT+TGG | + | chr4.1:13880803-13880822 | MS.gene53384:intron | 20.0% |
| !!! | AAGGTTTTGAAATCTAATAT+TGG | + | chr4.1:13880583-13880602 | MS.gene53384:intron | 20.0% |
| !!! | ATAAAACATATCCTTTTGAA+TGG | - | chr4.1:13879355-13879374 | None:intergenic | 20.0% |
| !!! | ATCTAAGTGTAATTTGTTAA+GGG | - | chr4.1:13881733-13881752 | None:intergenic | 20.0% |
| !!! | ATTACCAATTTTCTTCTAAT+CGG | + | chr4.1:13882410-13882429 | MS.gene53384:intron | 20.0% |
| !!! | ATTGATTTTTTTATTGCCTT+TGG | + | chr4.1:13882775-13882794 | MS.gene53384:intron | 20.0% |
| !!! | TATTTCAGTTTTTTACAATC+AGG | - | chr4.1:13880952-13880971 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTTGATGATT+TGG | + | chr4.1:13878645-13878664 | MS.gene53384:intron | 20.0% |
| !!! | TGTTTTTTTGTTTTGAATTC+AGG | + | chr4.1:13878709-13878728 | MS.gene53384:intron | 20.0% |
| !!! | TTTTTGATGATTTGGTATTT+GGG | + | chr4.1:13878653-13878672 | MS.gene53384:intron | 20.0% |
| !!! | TTTTTTGATGATTTGGTATT+TGG | + | chr4.1:13878652-13878671 | MS.gene53384:intron | 20.0% |
| ! | AAATAGATACTATCTTGAGT+AGG | + | chr4.1:13881081-13881100 | MS.gene53384:intron | 25.0% |
| ! | AACAACCTAATAAACATTGA+TGG | + | chr4.1:13881941-13881960 | MS.gene53384:intron | 25.0% |
| ! | AAGATAATTGAAACAACATC+TGG | - | chr4.1:13878840-13878859 | None:intergenic | 25.0% |
| ! | AATAGATACTATCTTGAGTA+GGG | + | chr4.1:13881082-13881101 | MS.gene53384:intron | 25.0% |
| ! | ACATTTCCCTTTATAAAAAG+GGG | - | chr4.1:13879980-13879999 | None:intergenic | 25.0% |
| ! | ACTAACAACAGTATATTATG+GGG | + | chr4.1:13880424-13880443 | MS.gene53384:intron | 25.0% |
| ! | AGAAATCAGTCTTAATTTCA+TGG | + | chr4.1:13881170-13881189 | MS.gene53384:intron | 25.0% |
| ! | AGAAATTGGAGAAAAGTTAT+GGG | + | chr4.1:13882898-13882917 | MS.gene53384:CDS | 25.0% |
| ! | AGACTCAATTTATACAAGAT+TGG | - | chr4.1:13881243-13881262 | None:intergenic | 25.0% |
| ! | AGTGGCAATAAAAAATCTTA+AGG | + | chr4.1:13880564-13880583 | MS.gene53384:intron | 25.0% |
| ! | ATATTCATCAAAATTGGATC+TGG | + | chr4.1:13879210-13879229 | MS.gene53384:intron | 25.0% |
| ! | ATGAGTCAACAATATCAAAA+TGG | - | chr4.1:13879854-13879873 | None:intergenic | 25.0% |
| ! | ATGATAGAAACAAAAACATG+TGG | - | chr4.1:13882216-13882235 | None:intergenic | 25.0% |
| ! | ATTAATGTACACAATCCAAA+TGG | - | chr4.1:13882448-13882467 | None:intergenic | 25.0% |
| ! | ATTGTACCATAATCACAAAT+TGG | - | chr4.1:13882297-13882316 | None:intergenic | 25.0% |
| ! | ATTTCATCTTAGTTCATGTT+TGG | + | chr4.1:13880971-13880990 | MS.gene53384:intron | 25.0% |
| ! | ATTTGTGATTATGGTACAAT+CGG | + | chr4.1:13882297-13882316 | MS.gene53384:intron | 25.0% |
| ! | CCATTTGATATGATGAATAA+AGG | - | chr4.1:13880751-13880770 | None:intergenic | 25.0% |
| ! | CCTTTATTCATCATATCAAA+TGG | + | chr4.1:13880748-13880767 | MS.gene53384:intron | 25.0% |
| ! | GAGCTTAAATTAATCCAAAT+TGG | - | chr4.1:13881197-13881216 | None:intergenic | 25.0% |
| ! | TATTGTCAAACTTGACATTA+GGG | - | chr4.1:13881526-13881545 | None:intergenic | 25.0% |
| ! | TCAAGTTTATATACTGCTTA+TGG | + | chr4.1:13882844-13882863 | MS.gene53384:intron | 25.0% |
| ! | TGAAGAGGTTGTTTATTTAT+TGG | + | chr4.1:13881846-13881865 | MS.gene53384:intron | 25.0% |
| ! | TGTGTGAACAATTCTTAAAA+CGG | - | chr4.1:13881906-13881925 | None:intergenic | 25.0% |
| ! | TTAATTTCTACTTTGCTGAA+GGG | + | chr4.1:13880537-13880556 | MS.gene53384:intron | 25.0% |
| ! | TTCTCAAATGATGAAAAGAT+AGG | - | chr4.1:13880385-13880404 | None:intergenic | 25.0% |
| !! | AATGTATGTAAGTTCAAGTT+TGG | + | chr4.1:13881424-13881443 | MS.gene53384:intron | 25.0% |
| !! | AGAAAATTGGTAATCAGAAA+AGG | - | chr4.1:13882404-13882423 | None:intergenic | 25.0% |
| !! | ATACTGTTGTTAGTTTCAAA+AGG | - | chr4.1:13880418-13880437 | None:intergenic | 25.0% |
| !! | CTTTTTCTGTGTCTTTTAAA+AGG | - | chr4.1:13882000-13882019 | None:intergenic | 25.0% |
| !! | GTTTAAAATTAAGTGAGCTA+GGG | - | chr4.1:13881967-13881986 | None:intergenic | 25.0% |
| !! | TTTAATTTCTACTTTGCTGA+AGG | + | chr4.1:13880536-13880555 | MS.gene53384:intron | 25.0% |
| !!! | ATATCCTTTTGAATGGATTA+AGG | - | chr4.1:13879348-13879367 | None:intergenic | 25.0% |
| !!! | GAATACTTTTGAAACATCAA+TGG | - | chr4.1:13879951-13879970 | None:intergenic | 25.0% |
| !!! | GATCTAAGTGTAATTTGTTA+AGG | - | chr4.1:13881734-13881753 | None:intergenic | 25.0% |
| !!! | GTTATGGAATGCATTTTTTA+TGG | + | chr4.1:13879416-13879435 | MS.gene53384:intron | 25.0% |
| !!! | TATCCTTTTGAATGGATTAA+GGG | - | chr4.1:13879347-13879366 | None:intergenic | 25.0% |
| !!! | TGCATTTTTTATGGTGTTAA+CGG | + | chr4.1:13879425-13879444 | MS.gene53384:intron | 25.0% |
| !!! | TGTGTTGATAATTTCAATGT+GGG | + | chr4.1:13878907-13878926 | MS.gene53384:intron | 25.0% |
| !!! | TTGTGTTGATAATTTCAATG+TGG | + | chr4.1:13878906-13878925 | MS.gene53384:intron | 25.0% |
| !!! | TTTTGTTTTGAATTCAGGTT+AGG | + | chr4.1:13878714-13878733 | MS.gene53384:intron | 25.0% |
| AAACTCCACAAAAATGAAAC+AGG | - | chr4.1:13880324-13880343 | None:intergenic | 30.0% | |
| AAATGTTAACTTATGCCCTT+GGG | + | chr4.1:13879994-13880013 | MS.gene53384:intron | 30.0% | |
| AACACAATGTAATTGTAGGA+TGG | - | chr4.1:13879306-13879325 | None:intergenic | 30.0% | |
| AACTAAATATGCCATCTCTT+GGG | - | chr4.1:13882181-13882200 | None:intergenic | 30.0% | |
| AACTCCACAAAAATGAAACA+GGG | - | chr4.1:13880323-13880342 | None:intergenic | 30.0% | |
| AATCCGGTGTAAAATTTGAA+GGG | - | chr4.1:13882702-13882721 | None:intergenic | 30.0% | |
| ACAACATCTGGAAAAAAAGA+AGG | - | chr4.1:13878828-13878847 | None:intergenic | 30.0% | |
| ACAAGTTAAGGAGCTTAAAA+TGG | - | chr4.1:13880128-13880147 | None:intergenic | 30.0% | |
| ACACAATGTAATTGTAGGAT+GGG | - | chr4.1:13879305-13879324 | None:intergenic | 30.0% | |
| ACTTGAGTTTGAATTGAACT+AGG | - | chr4.1:13881137-13881156 | None:intergenic | 30.0% | |
| ATACAACTATAGCACAAGAA+AGG | - | chr4.1:13880909-13880928 | None:intergenic | 30.0% | |
| ATCTCCGATTAGAAGAAAAT+TGG | - | chr4.1:13882417-13882436 | None:intergenic | 30.0% | |
| CAGAAATTGGAGAAAAGTTA+TGG | + | chr4.1:13882897-13882916 | MS.gene53384:CDS | 30.0% | |
| CATACCTTGATCATATCAAT+AGG | - | chr4.1:13878607-13878626 | None:intergenic | 30.0% | |
| CTTAATTTCATGGTCCAATT+TGG | + | chr4.1:13881180-13881199 | MS.gene53384:intron | 30.0% | |
| CTTGACAAATAAAGCAATTG+AGG | + | chr4.1:13879484-13879503 | MS.gene53384:CDS | 30.0% | |
| GCATAAGTTAAAAAGGCTAA+AGG | + | chr4.1:13880017-13880036 | MS.gene53384:intron | 30.0% | |
| GTATTGTCAAACTTGACATT+AGG | - | chr4.1:13881527-13881546 | None:intergenic | 30.0% | |
| GTATTTACTAGCTAATTGGT+GGG | + | chr4.1:13880807-13880826 | MS.gene53384:intron | 30.0% | |
| TAACTAAATATGCCATCTCT+TGG | - | chr4.1:13882182-13882201 | None:intergenic | 30.0% | |
| TAGCTAGAAAAACATACCAA+AGG | - | chr4.1:13882794-13882813 | None:intergenic | 30.0% | |
| TCAACCTATTGATATGATCA+AGG | + | chr4.1:13878600-13878619 | MS.gene53384:CDS | 30.0% | |
| TGAGTCTTCACATAATCAAA+TGG | - | chr4.1:13882591-13882610 | None:intergenic | 30.0% | |
| TGCATTCCAATTTGTGATTA+TGG | + | chr4.1:13882288-13882307 | MS.gene53384:intron | 30.0% | |
| TGTATTTACTAGCTAATTGG+TGG | + | chr4.1:13880806-13880825 | MS.gene53384:intron | 30.0% | |
| TTAACGGTTGTCTTACTTAT+TGG | + | chr4.1:13879441-13879460 | MS.gene53384:intron | 30.0% | |
| TTCTTGTCTAAGTCATGTAA+GGG | + | chr4.1:13882372-13882391 | MS.gene53384:intron | 30.0% | |
| TTTCTTGTCTAAGTCATGTA+AGG | + | chr4.1:13882371-13882390 | MS.gene53384:intron | 30.0% | |
| ! | ATCAAAATTGGATCTGGAAT+TGG | + | chr4.1:13879216-13879235 | MS.gene53384:intron | 30.0% |
| ! | ATCAATAGGTTGAATAACAC+AGG | - | chr4.1:13878593-13878612 | None:intergenic | 30.0% |
| ! | CACAAACCCCTTTTTATAAA+GGG | + | chr4.1:13879971-13879990 | MS.gene53384:intron | 30.0% |
| ! | CATAACTTTTCTCCAATTTC+TGG | - | chr4.1:13882899-13882918 | None:intergenic | 30.0% |
| ! | GGTTTAAAATTAAGTGAGCT+AGG | - | chr4.1:13881968-13881987 | None:intergenic | 30.0% |
| ! | TTGACACTTGCTAAAAGATT+TGG | - | chr4.1:13879894-13879913 | None:intergenic | 30.0% |
| ! | TTTTATCTACTGTGGTGTAA+AGG | - | chr4.1:13880715-13880734 | None:intergenic | 30.0% |
| !! | CGATTGCTACAATTTAGTTT+TGG | + | chr4.1:13881788-13881807 | MS.gene53384:intron | 30.0% |
| !! | GCTCTGAAAGAAATTACAAA+AGG | - | chr4.1:13879246-13879265 | None:intergenic | 30.0% |
| !! | GTTCTTTGAAATAGTGAATC+TGG | + | chr4.1:13882102-13882121 | MS.gene53384:intron | 30.0% |
| !! | TGAGTCATTGTATTTGGTTT+TGG | + | chr4.1:13879040-13879059 | MS.gene53384:intron | 30.0% |
| !! | TTTTAGATCTGTGAGTTGAA+GGG | + | chr4.1:13878979-13878998 | MS.gene53384:intron | 30.0% |
| !!! | ATACGAGTCTAGTTTTGAAA+AGG | - | chr4.1:13880852-13880871 | None:intergenic | 30.0% |
| !!! | TACGAGTCTAGTTTTGAAAA+GGG | - | chr4.1:13880851-13880870 | None:intergenic | 30.0% |
| AAACAAAAACATGTGGCAAC+AGG | - | chr4.1:13882209-13882228 | None:intergenic | 35.0% | |
| AAACAGCAAAGAAACAGAAC+AGG | - | chr4.1:13880286-13880305 | None:intergenic | 35.0% | |
| AAGAGAATAGTACCATGACA+TGG | - | chr4.1:13882752-13882771 | None:intergenic | 35.0% | |
| AATGTTAACTTATGCCCTTG+GGG | + | chr4.1:13879995-13880014 | MS.gene53384:intron | 35.0% | |
| AATTGTAGCAATCGCACTAT+AGG | - | chr4.1:13881782-13881801 | None:intergenic | 35.0% | |
| ACGAAGATGAAGGTTATATC+TGG | + | chr4.1:13881570-13881589 | MS.gene53384:intron | 35.0% | |
| ACTAGACTCGTATAGATCAA+AGG | + | chr4.1:13880859-13880878 | MS.gene53384:intron | 35.0% | |
| ACTGTGGTGTAAAGGAAATA+GGG | - | chr4.1:13880707-13880726 | None:intergenic | 35.0% | |
| AGAAGAGATTCAGTAGCAAA+TGG | - | chr4.1:13882520-13882539 | None:intergenic | 35.0% | |
| AGAGAATAGTACCATGACAT+GGG | - | chr4.1:13882751-13882770 | None:intergenic | 35.0% | |
| AGTTCAAGACACATATTGCA+AGG | - | chr4.1:13882242-13882261 | None:intergenic | 35.0% | |
| AGTTTGAATTGAACTAGGTC+TGG | - | chr4.1:13881132-13881151 | None:intergenic | 35.0% | |
| ATGAATAAAGGGGAAACTAG+GGG | - | chr4.1:13880739-13880758 | None:intergenic | 35.0% | |
| ATGCAAAGGACTAATGACAA+AGG | - | chr4.1:13879394-13879413 | None:intergenic | 35.0% | |
| CAACTTACAGCAACAAAACA+AGG | - | chr4.1:13882028-13882047 | None:intergenic | 35.0% | |
| CCTTTATAAAAAGGGGTTTG+TGG | - | chr4.1:13879973-13879992 | None:intergenic | 35.0% | |
| CGGAGATATGATATTCCATT+TGG | + | chr4.1:13882430-13882449 | MS.gene53384:intron | 35.0% | |
| CTAAATCCATACCTCAACAA+AGG | - | chr4.1:13879073-13879092 | None:intergenic | 35.0% | |
| CTCATTGAGTTTCAAAAGTC+GGG | - | chr4.1:13881220-13881239 | None:intergenic | 35.0% | |
| GAAATGTTAACTTATGCCCT+TGG | + | chr4.1:13879993-13880012 | MS.gene53384:intron | 35.0% | |
| GAACATAGTACCATTGACAT+TGG | - | chr4.1:13882140-13882159 | None:intergenic | 35.0% | |
| GAATCCGGTGTAAAATTTGA+AGG | - | chr4.1:13882703-13882722 | None:intergenic | 35.0% | |
| GATGAATAAAGGGGAAACTA+GGG | - | chr4.1:13880740-13880759 | None:intergenic | 35.0% | |
| GCTCATTGAGTTTCAAAAGT+CGG | - | chr4.1:13881221-13881240 | None:intergenic | 35.0% | |
| GTTCAAGACACATATTGCAA+GGG | - | chr4.1:13882241-13882260 | None:intergenic | 35.0% | |
| TAAGAGATACACGAAGATGA+AGG | + | chr4.1:13881560-13881579 | MS.gene53384:intron | 35.0% | |
| TACTGTGGTGTAAAGGAAAT+AGG | - | chr4.1:13880708-13880727 | None:intergenic | 35.0% | |
| TAGGGCCATCAATGTTTATT+AGG | - | chr4.1:13881949-13881968 | None:intergenic | 35.0% | |
| TCATTGAGTTTCAAAAGTCG+GGG | - | chr4.1:13881219-13881238 | None:intergenic | 35.0% | |
| TCTACCAAAAAGCTCTATGT+GGG | + | chr4.1:13879531-13879550 | MS.gene53384:CDS | 35.0% | |
| TCTACCATGCTTAAGAATGA+GGG | + | chr4.1:13878773-13878792 | MS.gene53384:CDS | 35.0% | |
| TGATGAATAAAGGGGAAACT+AGG | - | chr4.1:13880741-13880760 | None:intergenic | 35.0% | |
| TGCTACTGAATCTCTTCTTT+AGG | + | chr4.1:13882522-13882541 | MS.gene53384:intron | 35.0% | |
| TTCACACATCAAAAGTGAAC+TGG | + | chr4.1:13881918-13881937 | MS.gene53384:intron | 35.0% | |
| TTCTACCATGCTTAAGAATG+AGG | + | chr4.1:13878772-13878791 | MS.gene53384:CDS | 35.0% | |
| TTGTCATTAGTCCTTTGCAT+TGG | + | chr4.1:13879394-13879413 | MS.gene53384:intron | 35.0% | |
| TTGTTGAGGTATGGATTTAG+TGG | + | chr4.1:13879073-13879092 | MS.gene53384:intron | 35.0% | |
| ! | AATTCAGGTTAGGATTCAAC+TGG | + | chr4.1:13878724-13878743 | MS.gene53384:intron | 35.0% |
| ! | ATTCAGGTTAGGATTCAACT+GGG | + | chr4.1:13878725-13878744 | MS.gene53384:intron | 35.0% |
| ! | ATTGAGTCTTTTATGCTCAG+TGG | + | chr4.1:13881254-13881273 | MS.gene53384:intron | 35.0% |
| ! | CCACAAACCCCTTTTTATAA+AGG | + | chr4.1:13879970-13879989 | MS.gene53384:intron | 35.0% |
| ! | GGAGAAAAGTTATGGGTTAT+AGG | + | chr4.1:13882905-13882924 | MS.gene53384:CDS | 35.0% |
| ! | TTGAGTCTTTTATGCTCAGT+GGG | + | chr4.1:13881255-13881274 | MS.gene53384:intron | 35.0% |
| ! | TTTAGATCTGTGAGTTGAAG+GGG | + | chr4.1:13878980-13878999 | MS.gene53384:intron | 35.0% |
| ! | TTTGACTGCTTTGTTCTTAG+TGG | + | chr4.1:13878876-13878895 | MS.gene53384:intron | 35.0% |
| !! | AATGCCCTGTTTCATTTTTG+TGG | + | chr4.1:13880316-13880335 | MS.gene53384:intron | 35.0% |
| !! | AGTGAATCTGGTTCTTTATC+TGG | + | chr4.1:13882114-13882133 | MS.gene53384:intron | 35.0% |
| !! | CTTTTAGATCTGTGAGTTGA+AGG | + | chr4.1:13878978-13878997 | MS.gene53384:intron | 35.0% |
| !! | GCATTTCTTTCTAGTTGGAT+AGG | + | chr4.1:13881704-13881723 | MS.gene53384:intron | 35.0% |
| !! | GTTCTGTTTCTTTGCTGTTT+AGG | + | chr4.1:13880286-13880305 | MS.gene53384:intron | 35.0% |
| !! | TCAAAGTGTTGAGTTCTTCA+AGG | + | chr4.1:13879784-13879803 | MS.gene53384:CDS | 35.0% |
| !! | TTAGTCCTTTGCATTGGTTA+TGG | + | chr4.1:13879400-13879419 | MS.gene53384:intron | 35.0% |
| !!! | ACGAGTCTAGTTTTGAAAAG+GGG | - | chr4.1:13880850-13880869 | None:intergenic | 35.0% |
| !!! | CTTGTTTTGTTGCTGTAAGT+TGG | + | chr4.1:13882026-13882045 | MS.gene53384:intron | 35.0% |
| !!! | CTTTTTAACTTATGCCCCAA+GGG | - | chr4.1:13880012-13880031 | None:intergenic | 35.0% |
| AAAGCAATTGAGGCCAATGA+TGG | + | chr4.1:13879494-13879513 | MS.gene53384:CDS | 40.0% | |
| AACACCCTCATTCTTAAGCA+TGG | - | chr4.1:13878780-13878799 | None:intergenic | 40.0% | |
| AAGCTGAATCACTTCTTGCA+GGG | + | chr4.1:13879101-13879120 | MS.gene53384:intron | 40.0% | |
| AGTCATTTCACCTAGACCAA+CGG | - | chr4.1:13879813-13879832 | None:intergenic | 40.0% | |
| ATGAAGGGATTCTTTCACTG+TGG | + | chr4.1:13879696-13879715 | MS.gene53384:CDS | 40.0% | |
| CAACTCACAGATCTAAAAGC+AGG | - | chr4.1:13878977-13878996 | None:intergenic | 40.0% | |
| CAACTCACCTAAATGTTCCA+AGG | - | chr4.1:13879172-13879191 | None:intergenic | 40.0% | |
| CAGCCCTTAATCCATTCAAA+AGG | + | chr4.1:13879341-13879360 | MS.gene53384:intron | 40.0% | |
| CCTTGGGGCATAAGTTAAAA+AGG | + | chr4.1:13880010-13880029 | MS.gene53384:intron | 40.0% | |
| CTCTACCAAAAAGCTCTATG+TGG | + | chr4.1:13879530-13879549 | MS.gene53384:CDS | 40.0% | |
| CTTCATCCTTTGTTGAGGTA+TGG | + | chr4.1:13879064-13879083 | MS.gene53384:intron | 40.0% | |
| CTTTATCTGGCCAATGTCAA+TGG | + | chr4.1:13882127-13882146 | MS.gene53384:intron | 40.0% | |
| GAGAATAGTACCATGACATG+GGG | - | chr4.1:13882750-13882769 | None:intergenic | 40.0% | |
| GAGGGAAAATATCCATACAC+CGG | + | chr4.1:13882636-13882655 | MS.gene53384:CDS | 40.0% | |
| GATACTATCTTGAGTAGGGT+TGG | + | chr4.1:13881086-13881105 | MS.gene53384:intron | 40.0% | |
| GCATTCCATAACCAATGCAA+AGG | - | chr4.1:13879408-13879427 | None:intergenic | 40.0% | |
| TAACTCAGTGAACTGTGAAG+AGG | + | chr4.1:13881831-13881850 | MS.gene53384:intron | 40.0% | |
| TAAGCTGAATCACTTCTTGC+AGG | + | chr4.1:13879100-13879119 | MS.gene53384:intron | 40.0% | |
| TAGGGAGGAAGATTAGATGA+TGG | - | chr4.1:13880689-13880708 | None:intergenic | 40.0% | |
| TATGGTACAATCGGTAGTCT+TGG | + | chr4.1:13882306-13882325 | MS.gene53384:intron | 40.0% | |
| TCTAGGTGAAATGACTACTG+TGG | + | chr4.1:13879817-13879836 | MS.gene53384:CDS | 40.0% | |
| TGTCAAACTTGACATTAGGG+CGG | - | chr4.1:13881523-13881542 | None:intergenic | 40.0% | |
| TTAGGTGCAAGTAGTGTATC+TGG | + | chr4.1:13882540-13882559 | MS.gene53384:intron | 40.0% | |
| TTGGACTTCATCCTTTGTTG+AGG | + | chr4.1:13879059-13879078 | MS.gene53384:intron | 40.0% | |
| ! | ACTGGGCATTTCTTTCTAGT+TGG | + | chr4.1:13881699-13881718 | MS.gene53384:intron | 40.0% |
| ! | ATGCTTAAGAATGAGGGTGT+TGG | + | chr4.1:13878779-13878798 | MS.gene53384:CDS | 40.0% |
| ! | CTAGGGGATTTTATCTACTG+TGG | - | chr4.1:13880723-13880742 | None:intergenic | 40.0% |
| ! | CTTTCTGTACTGAGTTGAGT+AGG | + | chr4.1:13881472-13881491 | MS.gene53384:intron | 40.0% |
| ! | GGACCCTTCAAATTTTACAC+CGG | + | chr4.1:13882696-13882715 | MS.gene53384:CDS | 40.0% |
| !! | AGAAGCATCACTGTTATTCG+AGG | + | chr4.1:13881379-13881398 | MS.gene53384:intron | 40.0% |
| !! | CATAGAGCTTTTTGGTAGAG+TGG | - | chr4.1:13879530-13879549 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr4.1:13880152-13880171 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr4.1:13880153-13880172 | None:intergenic | 40.0% |
| !! | TCTTTTAAAAGGCTGACGCA+TGG | - | chr4.1:13881989-13882008 | None:intergenic | 40.0% |
| !!! | CCTTTTTAACTTATGCCCCA+AGG | - | chr4.1:13880013-13880032 | None:intergenic | 40.0% |
| !!! | TTTTCTCCAATTTCTGGAGC+TGG | - | chr4.1:13882893-13882912 | None:intergenic | 40.0% |
| AAACTACACAAACGCCTTCC+AGG | + | chr4.1:13879652-13879671 | MS.gene53384:CDS | 45.0% | |
| AAAGATGCAACCTGATGCTG+AGG | + | chr4.1:13882617-13882636 | MS.gene53384:CDS | 45.0% | |
| AAGATGCAACCTGATGCTGA+GGG | + | chr4.1:13882618-13882637 | MS.gene53384:CDS | 45.0% | |
| ACCATCAAGCCTTTCGTCAA+TGG | + | chr4.1:13878544-13878563 | MS.gene53384:CDS | 45.0% | |
| ACCATTGACGAAAGGCTTGA+TGG | - | chr4.1:13878548-13878567 | None:intergenic | 45.0% | |
| ACTGCTTATGGCAGATGACA+TGG | + | chr4.1:13882856-13882875 | MS.gene53384:intron | 45.0% | |
| ACTTTGCTGAAGGGATTGAG+TGG | + | chr4.1:13880546-13880565 | MS.gene53384:intron | 45.0% | |
| AGCATCACTGTTATTCGAGG+CGG | + | chr4.1:13881382-13881401 | MS.gene53384:intron | 45.0% | |
| ATCAAGCCTTTCGTCAATGG+TGG | + | chr4.1:13878547-13878566 | MS.gene53384:CDS | 45.0% | |
| CAATCCTGACACAGTAGACA+GGG | - | chr4.1:13882725-13882744 | None:intergenic | 45.0% | |
| CTTTATGCACACCCAAGAGA+TGG | + | chr4.1:13882167-13882186 | MS.gene53384:intron | 45.0% | |
| GAATTGAACTAGGTCTGGCT+TGG | - | chr4.1:13881127-13881146 | None:intergenic | 45.0% | |
| GAGTTCTTCAAGGATACCGT+TGG | + | chr4.1:13879794-13879813 | MS.gene53384:CDS | 45.0% | |
| GCTGTCAAGACCTTCAAATC+TGG | + | chr4.1:13882672-13882691 | MS.gene53384:CDS | 45.0% | |
| GGGATTCTTTCACTGTGGAA+AGG | + | chr4.1:13879701-13879720 | MS.gene53384:CDS | 45.0% | |
| GGTGAAATGACTACTGTGGT+TGG | + | chr4.1:13879821-13879840 | MS.gene53384:CDS | 45.0% | |
| GTCAAGACCTTCAAATCTGG+AGG | + | chr4.1:13882675-13882694 | MS.gene53384:CDS | 45.0% | |
| GTGGTGTAAAGGAAATAGGG+AGG | - | chr4.1:13880704-13880723 | None:intergenic | 45.0% | |
| GTTAGGATTCAACTGGGTCA+AGG | + | chr4.1:13878731-13878750 | MS.gene53384:CDS | 45.0% | |
| TTCCAGGCACTTTACCGTAT+CGG | + | chr4.1:13879668-13879687 | MS.gene53384:CDS | 45.0% | |
| TTTGGCACTCATTCGTATGC+AGG | + | chr4.1:13879598-13879617 | MS.gene53384:CDS | 45.0% | |
| ! | AAGAGCCATGGCATTGAACA+TGG | + | chr4.1:13879742-13879761 | MS.gene53384:CDS | 45.0% |
| ! | AGAGCCATGGCATTGAACAT+GGG | + | chr4.1:13879743-13879762 | MS.gene53384:CDS | 45.0% |
| ! | GGATATTTTCCCTCAGCATC+AGG | - | chr4.1:13882630-13882649 | None:intergenic | 45.0% |
| ! | TCAGCCCACATAGAGCTTTT+TGG | - | chr4.1:13879538-13879557 | None:intergenic | 45.0% |
| ! | TTCAAGGATACCGTTGGTCT+AGG | + | chr4.1:13879800-13879819 | MS.gene53384:CDS | 45.0% |
| ! | TTGACGAAAGGCTTGATGGT+TGG | - | chr4.1:13878544-13878563 | None:intergenic | 45.0% |
| !! | AGCTTTTTGGTAGAGTGGCA+GGG | - | chr4.1:13879525-13879544 | None:intergenic | 45.0% |
| !! | AGTTGGTAGTCCAGCTGATT+TGG | + | chr4.1:13879580-13879599 | MS.gene53384:CDS | 45.0% |
| !! | CTCCTTAACTTGTGCCCTAA+GGG | + | chr4.1:13880135-13880154 | MS.gene53384:intron | 45.0% |
| !! | GGAAGGCGTTTGTGTAGTTT+CGG | - | chr4.1:13879652-13879671 | None:intergenic | 45.0% |
| !! | GGGTGTTGGTGCTTTCTATA+AGG | + | chr4.1:13878793-13878812 | MS.gene53384:CDS | 45.0% |
| !! | TCACTCTCTAGCTAGCTTTC+TGG | + | chr4.1:13880775-13880794 | MS.gene53384:intron | 45.0% |
| !! | TTTCACTGTGGAAAGGTGCT+GGG | + | chr4.1:13879708-13879727 | MS.gene53384:CDS | 45.0% |
| !!! | TAATTTATTCTTTTATAAAA+GGG | - | chr4.1:13880176-13880195 | None:intergenic | 5.0% |
| AAACCAGCAGCAACAGGCTT+AGG | - | chr4.1:13878517-13878536 | None:intergenic | 50.0% | |
| AAATGTTCCAAGGCGTGCAG+TGG | - | chr4.1:13879162-13879181 | None:intergenic | 50.0% | |
| AGTTGAGTAGGCACAGGAGT+TGG | + | chr4.1:13881484-13881503 | MS.gene53384:intron | 50.0% | |
| CATCCCCATGTTCAATGCCA+TGG | - | chr4.1:13879750-13879769 | None:intergenic | 50.0% | |
| CCTCAACCAGCTCCAGAAAT+TGG | + | chr4.1:13882884-13882903 | MS.gene53384:CDS | 50.0% | |
| CGAATGAGTGCCAAATCAGC+TGG | - | chr4.1:13879593-13879612 | None:intergenic | 50.0% | |
| CTGCACGCCTTGGAACATTT+AGG | + | chr4.1:13879162-13879181 | MS.gene53384:CDS | 50.0% | |
| GAAGGGTCCTCCAGATTTGA+AGG | - | chr4.1:13882685-13882704 | None:intergenic | 50.0% | |
| GACACAGTAGACAGGGAATC+CGG | - | chr4.1:13882718-13882737 | None:intergenic | 50.0% | |
| GATTCCCTGTCTACTGTGTC+AGG | + | chr4.1:13882718-13882737 | MS.gene53384:CDS | 50.0% | |
| GCAATCCTGACACAGTAGAC+AGG | - | chr4.1:13882726-13882745 | None:intergenic | 50.0% | |
| GCCATGGCTCTTACTACAGT+AGG | - | chr4.1:13879734-13879753 | None:intergenic | 50.0% | |
| GCCTACTGTAGTAAGAGCCA+TGG | + | chr4.1:13879730-13879749 | MS.gene53384:CDS | 50.0% | |
| GGTGCAATTGGAGCAACAGT+TGG | + | chr4.1:13879563-13879582 | MS.gene53384:CDS | 50.0% | |
| GTCTATCAGCTGGGTTACTC+AGG | + | chr4.1:13879123-13879142 | MS.gene53384:CDS | 50.0% | |
| TCTTGCAGGGTCTATCAGCT+GGG | + | chr4.1:13879114-13879133 | MS.gene53384:intron | 50.0% | |
| TGCCCTTAGGGCACAAGTTA+AGG | - | chr4.1:13880140-13880159 | None:intergenic | 50.0% | |
| TTCTTGCAGGGTCTATCAGC+TGG | + | chr4.1:13879113-13879132 | MS.gene53384:intron | 50.0% | |
| ! | ACCGTATCGGTGCAGATGAA+GGG | + | chr4.1:13879681-13879700 | MS.gene53384:CDS | 50.0% |
| ! | CTTTCACTGTGGAAAGGTGC+TGG | + | chr4.1:13879707-13879726 | MS.gene53384:CDS | 50.0% |
| ! | GAAGCACCACCATTGACGAA+AGG | - | chr4.1:13878556-13878575 | None:intergenic | 50.0% |
| ! | GAGCCATGGCATTGAACATG+GGG | + | chr4.1:13879744-13879763 | MS.gene53384:CDS | 50.0% |
| ! | GATACGGTAAAGTGCCTGGA+AGG | - | chr4.1:13879669-13879688 | None:intergenic | 50.0% |
| ! | GTACTGAGTTGAGTAGGCAC+AGG | + | chr4.1:13881478-13881497 | MS.gene53384:intron | 50.0% |
| ! | TACCGTATCGGTGCAGATGA+AGG | + | chr4.1:13879680-13879699 | MS.gene53384:CDS | 50.0% |
| ! | TCCCTTCATCTGCACCGATA+CGG | - | chr4.1:13879685-13879704 | None:intergenic | 50.0% |
| ! | TTCGTCAATGGTGGTGCTTC+TGG | + | chr4.1:13878556-13878575 | MS.gene53384:CDS | 50.0% |
| !! | CCAATTTCTGGAGCTGGTTG+AGG | - | chr4.1:13882887-13882906 | None:intergenic | 50.0% |
| !! | GAGCTTTTTGGTAGAGTGGC+AGG | - | chr4.1:13879526-13879545 | None:intergenic | 50.0% |
| !! | GCTCCTTAACTTGTGCCCTA+AGG | + | chr4.1:13880134-13880153 | MS.gene53384:intron | 50.0% |
| !! | GCTTTTTGGTAGAGTGGCAG+GGG | - | chr4.1:13879524-13879543 | None:intergenic | 50.0% |
| AAGCCTAAGCCTGTTGCTGC+TGG | + | chr4.1:13878511-13878530 | MS.gene53384:CDS | 55.0% | |
| ACTTACACCACTGCACGCCT+TGG | + | chr4.1:13879152-13879171 | MS.gene53384:CDS | 55.0% | |
| ATCAGCTGGGTTACTCAGGC+AGG | + | chr4.1:13879127-13879146 | MS.gene53384:CDS | 55.0% | |
| CAGGATTGCTCCCCATGTCA+TGG | + | chr4.1:13882737-13882756 | MS.gene53384:CDS | 55.0% | |
| CAGTCAAGAGAGCCGGTGTA+TGG | - | chr4.1:13882651-13882670 | None:intergenic | 55.0% | |
| GACAGCACAGTCAAGAGAGC+CGG | - | chr4.1:13882658-13882677 | None:intergenic | 55.0% | |
| ! | CACCGATACGGTAAAGTGCC+TGG | - | chr4.1:13879673-13879692 | None:intergenic | 55.0% |
| ! | TAGTTTCGGCGCTGAGCAAG+AGG | - | chr4.1:13879638-13879657 | None:intergenic | 55.0% |
| !! | AGCCTGTTGCTGCTGGTTTC+TGG | + | chr4.1:13878518-13878537 | MS.gene53384:CDS | 55.0% |
| GGCCAGAAACCAGCAGCAAC+AGG | - | chr4.1:13878523-13878542 | None:intergenic | 60.0% | |
| GGGCTGACTGCTGGTGCAAT+TGG | + | chr4.1:13879551-13879570 | MS.gene53384:CDS | 60.0% | |
| TGGCAGGGGCTTGCCATCAT+TGG | - | chr4.1:13879510-13879529 | None:intergenic | 60.0% | |
| ! | GCTCTATGTGGGCTGACTGC+TGG | + | chr4.1:13879542-13879561 | MS.gene53384:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13878496 | 13882926 | 13878496 | ID=MS.gene53384 |
| chr4.1 | mRNA | 13878496 | 13882926 | 13878496 | ID=MS.gene53384.t1;Parent=MS.gene53384 |
| chr4.1 | exon | 13878496 | 13878621 | 13878496 | ID=MS.gene53384.t1.exon1;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13878496 | 13878621 | 13878496 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| chr4.1 | exon | 13878731 | 13878814 | 13878731 | ID=MS.gene53384.t1.exon2;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13878731 | 13878814 | 13878731 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| chr4.1 | exon | 13879122 | 13879183 | 13879122 | ID=MS.gene53384.t1.exon3;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13879122 | 13879183 | 13879122 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| chr4.1 | exon | 13879481 | 13879842 | 13879481 | ID=MS.gene53384.t1.exon4;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13879481 | 13879842 | 13879481 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| chr4.1 | exon | 13882544 | 13882758 | 13882544 | ID=MS.gene53384.t1.exon5;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13882544 | 13882758 | 13882544 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| chr4.1 | exon | 13882870 | 13882926 | 13882870 | ID=MS.gene53384.t1.exon6;Parent=MS.gene53384.t1 |
| chr4.1 | CDS | 13882870 | 13882926 | 13882870 | ID=cds.MS.gene53384.t1;Parent=MS.gene53384.t1 |
| Gene Sequence |
| Protein sequence |
