AlfalfaGEDB | MS.gene64395

M. sativa cultivar XinJiangDaYe / MS.gene64395

KEGG: K13137
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00400.35 PF12894.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64395.t1	XP_013463932.1	99.4	348	2	0	1	348	1	348	3.90E-205	723.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64395.t1	Q9Y3F4	50.9	291	140	2	9	299	7	294	1.3e-84	314.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64395.t1	A0A072V826	99.4	348	2	0	1	348	1	348	2.8e-205	723.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene64395	0.800439	1.44E-48	-1.69E-46
MS.gene049580	MS.gene64395	0.8188	1.62E-52	-1.69E-46
MS.gene049825	MS.gene64395	0.812214	4.74E-51	-1.69E-46
MS.gene050752	MS.gene64395	0.856052	4.18E-62	-1.69E-46
MS.gene050955	MS.gene64395	0.8617	8.53E-64	-1.69E-46
MS.gene051003	MS.gene64395	0.827706	1.35E-54	-1.69E-46
MS.gene051033	MS.gene64395	-0.82119	4.61E-53	-1.69E-46
MS.gene051234	MS.gene64395	0.806406	8.35E-50	-1.69E-46
MS.gene051746	MS.gene64395	0.813274	2.78E-51	-1.69E-46
MS.gene051748	MS.gene64395	0.805274	1.44E-49	-1.69E-46

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene005651	MS.gene64395	PPI
MS.gene03010	MS.gene64395	PPI
MS.gene038868	MS.gene64395	PPI
MS.gene042467	MS.gene64395	PPI
MS.gene08162	MS.gene64395	PPI
MS.gene20684	MS.gene64395	PPI
MS.gene35518	MS.gene64395	PPI
MS.gene41778	MS.gene64395	PPI
MS.gene64395	MS.gene059290	PPI
MS.gene64395	MS.gene067859	PPI

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64395.t1	MTR_2g054920	99.425	348	2	0	1	348	1	348	0.0	716
MS.gene64395.t1	MTR_7g081695	83.621	232	22	2	100	316	514	744	1.99e-132	396
MS.gene64395.t1	MTR_2g087640	30.841	321	190	8	9	301	3	319	6.19e-38	138
MS.gene64395.t1	MTR_1g072140	26.689	296	195	12	15	297	26	312	4.92e-18	84.0
MS.gene64395.t1	MTR_8g092620	26.087	276	193	8	30	299	29	299	3.15e-16	78.6
MS.gene64395.t1	MTR_4g119620	23.567	314	213	10	4	297	15	321	1.41e-14	73.9
MS.gene64395.t1	MTR_7g086360	26.000	300	160	9	10	296	92	342	8.01e-14	72.0
MS.gene64395.t1	MTR_8g092620	25.735	272	191	8	30	295	36	302	1.77e-13	70.9
MS.gene64395.t1	MTR_6g004040	28.042	189	130	6	112	297	27	212	2.19e-13	71.6
MS.gene64395.t1	MTR_3g116500	25.843	267	174	8	56	299	60	325	1.18e-12	68.6

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64395.t1	AT3G15610	79.420	345	63	1	1	345	1	337	0.0	565
MS.gene64395.t1	AT1G52730	79.710	345	64	1	1	345	1	339	0.0	561
MS.gene64395.t1	AT1G52730	79.710	345	64	1	1	345	1	339	0.0	561
MS.gene64395.t1	AT1G15470	76.506	332	72	1	9	340	4	329	0.0	541
MS.gene64395.t1	AT1G52730	85.985	264	37	0	1	264	1	264	1.64e-167	468
MS.gene64395.t1	AT1G15470	82.745	255	44	0	9	263	4	258	6.10e-162	454
MS.gene64395.t1	AT2G46290	29.448	326	180	8	9	296	30	343	5.23e-39	142
MS.gene64395.t1	AT2G46280	30.189	318	188	8	9	296	3	316	6.31e-34	128
MS.gene64395.t1	AT2G46280	30.189	318	188	8	9	296	3	316	6.31e-34	128
MS.gene64395.t1	AT2G46280	30.488	246	150	7	9	237	3	244	1.53e-21	92.8

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Find 98 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGTGGATAAATCCCC+TGG	0.551218	2.4:+35363912	MS.gene64395:CDS
AAAGGAGAAGGCAAATGCAG+AGG	0.668862	2.4:+35365182	MS.gene64395:CDS
AAAGTTTGGGATGCATTAAC+AGG	0.357474	2.4:+35363148	MS.gene64395:CDS
AACAAACTTGTTACCAAACT+TGG	0.348142	2.4:-35364436	None:intergenic
AACACTCCTGACTGAACCAG+GGG	0.647227	2.4:-35363928	None:intergenic
AAGAAACCATCAGGGGTAAC+AGG	0.381202	2.4:-35359563	None:intergenic
AAGGGCATAAAGGTGCTGTT+TGG	0.408519	2.4:+35359884	MS.gene64395:CDS
AATAAGAAAGAAACCATCAG+GGG	0.716710	2.4:-35359570	None:intergenic
ACAAACTTGTTACCAAACTT+GGG	0.561688	2.4:-35364435	None:intergenic
ACCAAATGGAACCCTGGAAA+AGG	0.496038	2.4:+35365164	MS.gene64395:CDS

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTTACGAGTCCTTG+TGG	+	chr2.4:35360276-35360295	MS.gene64395:intron	30.0%
AAAAATTTACGAGTCCTTGT+GGG	+	chr2.4:35360277-35360296	MS.gene64395:intron	30.0%
AAAATTGCATCAAATACACC+CGG	-	chr2.4:35362364-35362383	None:intergenic	30.0%
AAAGAACACTATAATGCTTC+TGG	+	chr2.4:35361847-35361866	MS.gene64395:intron	30.0%
AAATATTACGGTGTTCTATC+TGG	+	chr2.4:35364990-35365009	MS.gene64395:intron	30.0%
AAATCATAAGTTCACAAGGT+TGG	+	chr2.4:35361597-35361616	MS.gene64395:intron	30.0%
AAATCTTGATTCTTTGAGCA+AGG	+	chr2.4:35363544-35363563	MS.gene64395:intron	30.0%
AACCTTGTGAACTTATGATT+TGG	-	chr2.4:35361598-35361617	None:intergenic	30.0%
AATAAGAAAGAAACCATCAG+GGG	-	chr2.4:35359573-35359592	None:intergenic	30.0%
AATTGGAACTTTGATACCTA+TGG	-	chr2.4:35360694-35360713	None:intergenic	30.0%

Showing 1 to 10 of 428 entries

Previous1 2 3 4 5…43Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	35359488	35365290	35359488	ID=MS.gene64395
chr2.4	mRNA	35359488	35365290	35359488	ID=MS.gene64395.t1;Parent=MS.gene64395
chr2.4	exon	35359488	35359605	35359488	ID=MS.gene64395.t1.exon1;Parent=MS.gene64395.t1
chr2.4	CDS	35359488	35359605	35359488	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35359830	35359965	35359830	ID=MS.gene64395.t1.exon2;Parent=MS.gene64395.t1
chr2.4	CDS	35359830	35359965	35359830	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35363147	35363228	35363147	ID=MS.gene64395.t1.exon3;Parent=MS.gene64395.t1
chr2.4	CDS	35363147	35363228	35363147	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35363834	35364009	35363834	ID=MS.gene64395.t1.exon4;Parent=MS.gene64395.t1
chr2.4	CDS	35363834	35364009	35363834	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35364155	35364292	35364155	ID=MS.gene64395.t1.exon5;Parent=MS.gene64395.t1
chr2.4	CDS	35364155	35364292	35364155	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35364377	35364516	35364377	ID=MS.gene64395.t1.exon6;Parent=MS.gene64395.t1
chr2.4	CDS	35364377	35364516	35364377	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1
chr2.4	exon	35365022	35365290	35365022	ID=MS.gene64395.t1.exon7;Parent=MS.gene64395.t1
chr2.4	CDS	35365022	35365290	35365022	ID=cds.MS.gene64395.t1;Parent=MS.gene64395.t1

Gene Sequence

>MS.gene64395

ATGGAAAAGAAAAAAGTTACTGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTTGTTGATCTCTTTTACAGTCCTGTTACCCCTGATGGTTTCTTTCTTATTAGCGCAAGCAAAGGTATTATTCTTGGATTTGGGAATTGTAGATTATGGTTGTTTTAATTTGTTTTTTTAGTTTTATATTTAATAGATCTGATCAGTTTTAGGATGTTAGCTATATGTAGCATCGATACTTCTGATCGAATGTGTCTGACATGTGTCGTCAGTGCCGACACGTGATAACATTTAATTTTGGAATTTTAGTGGAAAGTCGTGATGTGTGAGTTTTGTTTGTGTGAATAGATGCTAGTCCTATGCTGAGGAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCATAAAGGTGCTGTTTGGAGTTGTTGTTTGGATGCTCATGCTTTGCGCGCTGCTACTGCTTCTGCTGATTTCTCAACGTATGTTATCGTCTCTTTTTTTCCTTTCTTTCAGTATGTTTAATGATTCGTCGTGTTAGTTTTGTATTTAGCTCGAAATGTTCTGATTTCAATAAATTAGCTTGTTTAATGAGATATTTGTTAATGAGATATTTCTTTCAATGTGCTTTTTTTTCTGTGAAAATGTTTATTGTCTTATGCTTTACCGGATAAACATCCAACATGTGCACTCGCATTCATGTACGCGCGTGCACCCACATCTAATATAAATAGGAAAGTTAACCCAAAAAGGTCCAATTTAAATACGTAAAAGAAGTTCATAACCAATGACAAAAAATTTACGAGTCCTTGTGGGTCATTTATAAACTCAATTTTTAAATTGGTAAGAGTTGGCCTAATACTATATGAGGATTTTACCGTCATAAATGATATGCGGCGCACTGTCATTTTCCACCATTTGGATTGATCAAGTAATCCCACGCATCTTATCATAGAGTCTCCATACTGGATCCCACTTCCTCATCATGCACTTGCTTTGCTCATTGGATTTTCATTGCAATGCACTAGCTACTGTGTCCCTTCCTCCTAGTGGCCTAGCCTACTGTTCCATCACATTACATTATAGGTTTTTCAAGTTCCAACCTGATAATTATGCACGCCAAAATGAAACATTTTGAGATAATGCATGATTTTCAAACTCATAAGTTAACTTGCATACATACTTGTTGTCTAAACTTGGGTAAAATCCATAGGTATCAAAGTTCCAATTTAAATCCCAAAATCTTCGAGTTAACAATTTCACTGACCAATCTAGACCACACATAGAATCCCGATTTAGTGTAATGGGGTTGGGCGCTCGGCCCAAAAATAGTGTAAGTGACACTTTAATATTAATTTTTTTTTTCTAACCCCCCGCGGCTCGCCGCTCTTTTTGCTCCAAAAATACCCCCCTTTCCCCAACCACGTCCACTTTTTTCCTCGAAAATACCCTTATTCTAGTATTACTATGCATATATATACTAGTATTATCTTTGTTTTGGTAGGATCTTTCAATCTTGGTTGCAATTTTATGTTTTACGATCTCGTTACCCCTTTTCAGTTCTACAAAATTAATTGGATAAGATCATTCGATCTTGGTTGCGATCTTATGTTTTTACGATCTTGCTACCCCATTTCGATCTTATGACAGATCTCAATTCTGACAACCTTAAAATCTACTGTTTTTTAGTTACACCAGTTAACATTTTATTCTCTGTACTGTTATTTATCGTCAGTTTGACCATTTAATATGAATCCCCATTTAACATTTTATTCTTTGTACTAAGATTTTAATTTATTCTTACTAATTTTGTTTCCTTTTGGATTCAGCATTTAATCTGAATCTCCATTTAACATTTTCTGCTCTTAGTTTCACCATTTAATCTAAATCACTTTGTTCTTATTTTTACCCTTCTCGAGACTTTGACTGTTAATTTTCACCCTTCACTTTGTTCTTTACTGAATCTTTATTATGTATATATGTCATTTATATGTATTTTAATGTTATTCTTTATATAAAGAAAACTAGTTGAAACTAGAAGTTGAGTTTAAAATGCTCCATGAGTTTGTGTAGACTTTTGCGTTTGAAACCTTGATCGTATTCATAATTGACCAAATCATAAGTTCACAAGGTTGGAATGTAAAACAAAACTGCAGAAACTCAGGATTCTGTTACTTGATTGATTCAGAAGTTTGATAGTCATGTTCACAACTCAAGTTAAATTTAAGATTTCATAATATAAAATGCAAGAGATGTTGTGCCCAATCAGAATTGTAAATCTCACCGGACACATCCAGAAATTACAAACCACCCTGTCCCACACCCAGCCACTTGTAACATAACATGGGTCATTTGCAGCACCTAAAGAACACTATAATGCTTCTGGAAGGTGAATAGATAAGTTGCAGTGTTGACAGAATGCAACATGCCTATCTACAATCATGAACTCAGTATTCTGCTACTTGATTCACTAGTTTAATAATCATGTTCACAATTTTAGATCACATGATTTAAAATCCATGAAGAGATGTAGTGCCCAAACATAATTGCATACCACACTAGACACATAGAAATTACAAACTACACTGTCCCACACCCAACATTGCTTCTGGAAGGTGGACAGATAAGTTACATTATTGACAGAAGAAAGGGACCAGACTGGAACAACCAATCGCAGCAAAGTTTCACTTGTGCCATTAGTACAGCATTCAATTAATGGTGGCAGGGCAATGTTGCATAAAATGATGATCTTGGTTAGGGATGGGCAGTGTTGACGAATGTTTTCAGAGGCAAGTAGTGAGGTTTTAAAAAAGGTCCACAACAGTGATTGTGACCCCAGTGTCTAGGTTTTTGATGTCTCCACGCATAGTGACCACACCGGGTGTATTTGATGCAATTTTCTGCAATATCAAGGATCACAGCGCAGCCGTGGTGGAAACATTTATAATAACTGGGATTTTCCAATCCCACAGTGATTCCAGCCAAATGACTTCTCAACTAGTATTGAGTTCTAACACCTGAAACATGTAAAATGCATGAATCCACGAATTACAGTGCATATTCAACAACTTCATGAGTGAATGTAAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTCCGGGAAGGGGTCCCACCATTTGGTGTATTGTACGCAGCCTTACCCTGTTTTACACAAGAGGCTGTTTCCAGGACTTGAACTTCACGAGTGAATGTAATAAATTAAAATTCTTAAAACATACTTGATTTATAAATCAGTCCACTTTTCAATATTGAATTCCTAAAACAGGAATTGATTTCTGAATCTTTTGAAGTCAATTCAATTTTTTCAATGGTTTAAACCCATTAGGATTATTATGCTTTCAAATTATTTGTGTTTTTTGCTAAAGCCTTCCATATTGCTTAGTCATTATTGTGAAATCATGTTTTACACTAGCATTTTTCGCAGTGGCCGCTACACATTGCATTCTGCCATGAAGTTCCCCTGCATTAGTCCTTTAGTATCACACTCTGATATGCTTTTATTTTGACATTACTATTTTCTTGATTTATTTGACATTACTATTTTCTTGATTTTACACGCTGTGCACATTTTATATTGAAGTAATTGCAGTTTTATAAATTAGCATGACATATTTGTTGGTTTGTGTGCAGCAAAGTTTGGGATGCATTAACAGGTGACGCGTTACATTCTTTTGAGCATAAGCACATTGTCAGAGCATGTGCTTTTTCTGAGGTAGAATTGATGCCCGTGTTTCTTTCACAATTTGCATGACTGATATTTGTTGGTATTCATTTTGGTTGATCGGATAACGTTCCTAATGACAAAAACACAAAATTGTCCTTCCCGTAAATAGAAAATAAATACCATTAAAGTGTGCATGCCTAGAATTTACCAAGCGATTATAGTATTTTCATGTTACCATAACTGAATTCATCTACCAATAGCTGAATTCATTTATGGATCTACTTTTTTATGTTCATGAATGTCAGATAGTTGCTATTGTACTGTAGTTGTCACTTTGGCTTTTTATTTTATTTTTTATTACTTAAATCTTGATTCTTTGAGCAAGGACTGAGTGTATGGGATCTCTTTTGAAGTTCTCGTTGCAATTTTCAATTTCATCTCTACTTTGCTTTCCCTATTAAATTGTATCTGCAAGCTTTTAATTATGAGCTATTTTAATTACAAAACAAGCTTATCCTGGCATAGATTAAGTGATAATATACAATATATATTCTGTTAAAATTTGGATACCTTGTTAATGCCTTGTTCTTTATCTGAGGATACCCACCTTTGTTCATATGAATTGATTGATGTTTGTATATATCTGGGAGCAGGATACCCACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCACCTCCTAAAGAAGTGGATAAATCCCCTGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACTATATTGAGTTCATGTACTGATATGGGAGGCGTCAGGTATAACTTACTTGACCATACTATGTTGACAGTTGGCCGTTGTTGTCGTTTTTGTATATGAGCTTGCTTGTTTTTACTTCTAAACTTTGATATAAACATGAAGCTTGGATCCTCTATTGCACTGAATCTTGTTGATAATTCACAGGCTATGGGATGTAAGAACTGGTAAAATTGTCCAGACACTTGACACCAAGTCGCCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGCTATATTACAACTGCTGATGGTTCTACTGTCAAGTTTTGGGATGCAAATCAGTAAGTAACAATAAGTTAGTTGGCCATGTTCTTTTTTAAGGTTATGCCTTTTTGATGATTGACAACATCACCTGTGATTTTCAGCTATGGATTGGTGAAGAGCTATGACATGCCTTGCAATGTGGAATCAGCTTCGTTAGAGCCCAAGTTTGGTAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTTTTTGATTTCCATACGGGCGATGAGATTGGTAAGTTACTTAACATTTAATTACATTTATATGTTCAAATTAAAGCTTAAATAACATTTGTCCGTGTAGCATACACAAGTTCACCAGTTTCAACTTTTCCCCCCTACAAAGCATGAGTCAGTTAGTATGAATCCTTGAGAAATCGAAAAAAATGCTTCTGATTGTTGTTTTGGTTTTAGTCCGTTTATAATATTTGTTCTTATGAGAATTAATCCTTGCAATATCTGTGGATCATGTTGATTTTAGTCCCTAGAACAAAACATATAGCGACTAATTCCATATAGGTAATAATAGGATCTAAAACCAAAATAAGGACCAAATCATATTTCCTATGTTCTGGACCAACTATTTTTTAATATATACATTTACTAAAAAAAGTTATTTATATTTGTTTTACACTTCTGGCCTGGCATCTTTTGATAACTAAACTGATTTTTAAGTTTGGTTTAATTCATTGTGTGGTATATATTGATAAATATTACGGTGTTCTATCTGGTGATGGCAGCATGCAACAAAGGACATCATGGTCCTGTACACTGTGTCCGGTTCTCTCCTGGAGGAGAATCGTATGCATCAGGATCCGAGGATGGAACCATCAGAATATGGCAGACAGGGCCATTGACTCATGATGAATCAGAGGGTTTATCACCAAATGGAACCCTGGAAAAGGAGAAGGCAAATGCAGAGGAGGAGGTTTCGCGCAGGATTGAGGGTTTTCATATTGCAGAGGAGGCCAAGTCCAAAGGAAAGGAAGAGGCGGGGGTGGAATTATGA

Protein sequence

>MS.gene64395.t1

MEKKKVTVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDAHALRAATASADFSTKVWDALTGDALHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGKIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFVAGGEDLWVHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDESEGLSPNGTLEKEKANAEEEVSRRIEGFHIAEEAKSKGKEEAGVEL