Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030125.t1 | AFK39086.1 | 98.3 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 2.00E-93 | 351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030125.t1 | Q9SYH2 | 65.0 | 180 | 57 | 2 | 5 | 178 | 4 | 183 | 1.4e-53 | 210.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030125.t1 | I3SFP4 | 98.3 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 1.5e-93 | 351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030125 | MS.gene00182 | PPI |
| MS.gene030125 | MS.gene063067 | PPI |
| MS.gene030125 | MS.gene56011 | PPI |
| MS.gene030125 | MS.gene74085 | PPI |
| MS.gene044943 | MS.gene030125 | PPI |
| MS.gene030125 | MS.gene59465 | PPI |
| MS.gene030125 | MS.gene68059 | PPI |
| MS.gene030125 | MS.gene65289 | PPI |
| MS.gene030125 | MS.gene014181 | PPI |
| MS.gene030125 | MS.gene062428 | PPI |
| MS.gene030125 | MS.gene010619 | PPI |
| MS.gene030125 | MS.gene058216 | PPI |
| MS.gene030125 | MS.gene64762 | PPI |
| MS.gene030125 | MS.gene68716 | PPI |
| MS.gene030125 | MS.gene68113 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030125.t1 | MTR_3g015130 | 98.883 | 179 | 2 | 0 | 1 | 179 | 1 | 179 | 3.03e-128 | 357 |
| MS.gene030125.t1 | MTR_4g123000 | 97.207 | 179 | 5 | 0 | 1 | 179 | 1 | 179 | 1.59e-126 | 353 |
| MS.gene030125.t1 | MTR_6g027990 | 74.510 | 51 | 13 | 0 | 77 | 127 | 36 | 86 | 3.50e-19 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030125.t1 | AT1G54140 | 66.484 | 182 | 53 | 2 | 4 | 178 | 3 | 183 | 1.73e-75 | 224 |
Find 47 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTCAGTTTCTTCTAT+AGG | 0.276264 | 8.4:+11406961 | None:intergenic |
| TTCTCTTCTTGAGACGGGTT+GGG | 0.349426 | 8.4:+11406919 | None:intergenic |
| GGATTTGAAATCAATCCTTT+TGG | 0.349810 | 8.4:+11406842 | None:intergenic |
| TGCACAATCTTTGCATCCCT+TGG | 0.390884 | 8.4:+11408378 | None:intergenic |
| ACATCATCAACATCAATTGC+AGG | 0.392863 | 8.4:+11408225 | None:intergenic |
| GCAGTCTTTGTTGAAATCAA+TGG | 0.422201 | 8.4:-11408358 | MS.gene030125:CDS |
| GGGGAAATGACACTCTTTGA+TGG | 0.423837 | 8.4:+11406875 | None:intergenic |
| TTTCTCTTCTTGAGACGGGT+TGG | 0.425429 | 8.4:+11406918 | None:intergenic |
| CCAAAGTCTATAGCAGGGCC+TGG | 0.446628 | 8.4:-11407063 | MS.gene030125:CDS |
| GACGGGTTGGGATCAGCATT+GGG | 0.453169 | 8.4:+11406931 | None:intergenic |
| GCAATCAATGTGTCCTGATC+GGG | 0.454600 | 8.4:+11407027 | None:intergenic |
| AGACGGGTTGGGATCAGCAT+TGG | 0.455142 | 8.4:+11406930 | None:intergenic |
| TCCCCTGCCTAAACGCCAAA+AGG | 0.463108 | 8.4:-11406857 | MS.gene030125:CDS |
| GGAATTGCGAACTGGTAGTT+GGG | 0.471146 | 8.4:+11407003 | None:intergenic |
| GTTTCCACTTCCACCCGATC+AGG | 0.473279 | 8.4:-11407040 | MS.gene030125:CDS |
| CCAGGCCCTGCTATAGACTT+TGG | 0.478355 | 8.4:+11407063 | None:intergenic |
| CAGCATGCTCTGAATACACC+TGG | 0.484633 | 8.4:+11408253 | None:intergenic |
| CAGTCTTTGTTGAAATCAAT+GGG | 0.492657 | 8.4:-11408357 | MS.gene030125:CDS |
| TGGAATTGCGAACTGGTAGT+TGG | 0.494497 | 8.4:+11407002 | None:intergenic |
| CAAAGTCTATAGCAGGGCCT+GGG | 0.507554 | 8.4:-11407062 | MS.gene030125:CDS |
| GTGTCCTGATCGGGTGGAAG+TGG | 0.509015 | 8.4:+11407036 | None:intergenic |
| CCATTGCCAAAGTCTATAGC+AGG | 0.509326 | 8.4:-11407069 | MS.gene030125:CDS |
| AACTTCTATGGCTGATAATG+AGG | 0.509441 | 8.4:-11408415 | None:intergenic |
| GGGAAATGACACTCTTTGAT+GGG | 0.522755 | 8.4:+11406876 | None:intergenic |
| AGTTCGCAATTCCAAACAAA+AGG | 0.527607 | 8.4:-11406993 | MS.gene030125:CDS |
| TAAACAAGTTCCTTGAGCTA+TGG | 0.532540 | 8.4:-11408308 | MS.gene030125:CDS |
| GCGAGAAGCTGAAGTTGACC+TGG | 0.535925 | 8.4:+11408184 | None:intergenic |
| GAAGTTGACCTGGGATTGAA+TGG | 0.538339 | 8.4:+11408194 | None:intergenic |
| TTTGTTGAAATCAATGGGTG+TGG | 0.553986 | 8.4:-11408352 | MS.gene030125:CDS |
| TGATGTTGATGATGTTAAGC+TGG | 0.558883 | 8.4:-11408217 | MS.gene030125:CDS |
| AGCAATCAATGTGTCCTGAT+CGG | 0.568815 | 8.4:+11407026 | None:intergenic |
| TAAGCTGGCCATTCAATCCC+AGG | 0.581196 | 8.4:-11408202 | MS.gene030125:CDS |
| ATCAATGTGTCCTGATCGGG+TGG | 0.588089 | 8.4:+11407030 | None:intergenic |
| CAGGTGTATTCAGAGCATGC+TGG | 0.605392 | 8.4:-11408252 | MS.gene030125:CDS |
| AGGAAGACTCGAATATGCCA+AGG | 0.607648 | 8.4:-11408395 | MS.gene030125:CDS |
| TGATGTATTAACAGATGCCC+AGG | 0.610415 | 8.4:-11408271 | MS.gene030125:CDS |
| CGAGAAGCTGAAGTTGACCT+GGG | 0.614371 | 8.4:+11408185 | None:intergenic |
| TGAGCTATGGTATCGCTATG+TGG | 0.621181 | 8.4:-11408295 | MS.gene030125:CDS |
| GGAAATGACACTCTTTGATG+GGG | 0.631012 | 8.4:+11406877 | None:intergenic |
| TCGGGTGGAAGTGGAAACCC+AGG | 0.633441 | 8.4:+11407045 | None:intergenic |
| CATAGCGATACCATAGCTCA+AGG | 0.639257 | 8.4:+11408298 | None:intergenic |
| AGGAACTTGTTTATAACACG+AGG | 0.647916 | 8.4:+11408318 | None:intergenic |
| CCTGCTATAGACTTTGGCAA+TGG | 0.651706 | 8.4:+11407069 | None:intergenic |
| AGCATGCTCTGAATACACCT+GGG | 0.665137 | 8.4:+11408254 | None:intergenic |
| CATTGCCAAAGTCTATAGCA+GGG | 0.667332 | 8.4:-11407068 | MS.gene030125:CDS |
| GGAAGACTCGAATATGCCAA+GGG | 0.693042 | 8.4:-11408394 | MS.gene030125:CDS |
| CGAACCTATAGAAGAAACTG+AGG | 0.711331 | 8.4:-11406965 | MS.gene030125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTATTTTTTTTT+TGG | - | chr8.4:11407408-11407427 | MS.gene030125:intron | 0.0% |
| !! | AAAAATTTACAAATAGTTTA+GGG | + | chr8.4:11407655-11407674 | None:intergenic | 10.0% |
| !! | ATTTATTAGTAATTGTAATT+AGG | - | chr8.4:11407743-11407762 | MS.gene030125:intron | 10.0% |
| !! | TAAAAATTTACAAATAGTTT+AGG | + | chr8.4:11407656-11407675 | None:intergenic | 10.0% |
| !! | TTACAATTACTAATAAATTT+AGG | + | chr8.4:11407741-11407760 | None:intergenic | 10.0% |
| !!! | ATTACAAATATGTTTAATTT+AGG | - | chr8.4:11408019-11408038 | MS.gene030125:intron | 10.0% |
| !!! | ATTACAATTTATTTTAGTTT+AGG | + | chr8.4:11407687-11407706 | None:intergenic | 10.0% |
| !!! | CTATTTGTAAATTTTTAAAT+AGG | - | chr8.4:11407659-11407678 | MS.gene030125:intron | 10.0% |
| !!! | GAAATTATTTTAAGTTTAAA+AGG | - | chr8.4:11407903-11407922 | MS.gene030125:intron | 10.0% |
| !!! | TTACAATTTATTTTAGTTTA+GGG | + | chr8.4:11407686-11407705 | None:intergenic | 10.0% |
| !!! | AAACATGCATTAATTTTTTA+AGG | - | chr8.4:11407434-11407453 | MS.gene030125:intron | 15.0% |
| !!! | GAATATTTTTGACAAATATA+GGG | - | chr8.4:11407991-11408010 | MS.gene030125:intron | 15.0% |
| !!! | TGAATATTTTTGACAAATAT+AGG | - | chr8.4:11407990-11408009 | MS.gene030125:intron | 15.0% |
| !!! | TTTAGGTTTAATTATTTTGT+AGG | - | chr8.4:11407628-11407647 | MS.gene030125:intron | 15.0% |
| !! | TGTTAAAAAAAAAGGGTTTA+AGG | + | chr8.4:11407794-11407813 | None:intergenic | 20.0% |
| !! | TTATTTGAGGATTCTTAAAT+AGG | + | chr8.4:11408047-11408066 | None:intergenic | 20.0% |
| !!! | ACAAACTATTTTAAGGTTTA+AGG | + | chr8.4:11407822-11407841 | None:intergenic | 20.0% |
| ! | AAAGATTATTTGAAAGTCCA+GGG | - | chr8.4:11407935-11407954 | MS.gene030125:intron | 25.0% |
| ! | AAGAATCCTCAAATAATTCA+TGG | - | chr8.4:11408051-11408070 | MS.gene030125:intron | 25.0% |
| ! | AATAGATGCATTTAATCCTT+TGG | + | chr8.4:11407202-11407221 | None:intergenic | 25.0% |
| ! | ATAAAAAATATTACCTCACG+AGG | + | chr8.4:11407110-11407129 | None:intergenic | 25.0% |
| ! | CCAATAAAAAACTCAGTTTA+AGG | + | chr8.4:11407770-11407789 | None:intergenic | 25.0% |
| ! | CTAGATTAAGAAAATAGTTC+AGG | - | chr8.4:11407959-11407978 | MS.gene030125:intron | 25.0% |
| ! | GTTCATTAAACTATCATGAT+TGG | - | chr8.4:11407251-11407270 | MS.gene030125:intron | 25.0% |
| ! | TAAAAAATATTACCTCACGA+GGG | + | chr8.4:11407109-11407128 | None:intergenic | 25.0% |
| ! | TAAAGATTATTTGAAAGTCC+AGG | - | chr8.4:11407934-11407953 | MS.gene030125:intron | 25.0% |
| ! | TATTAATGTCCCTAAATTCA+AGG | + | chr8.4:11407853-11407872 | None:intergenic | 25.0% |
| !! | GGTAACTACAAACTATTTTA+AGG | + | chr8.4:11407829-11407848 | None:intergenic | 25.0% |
| !!! | AAACCCTTTTTTTTTAACAG+CGG | - | chr8.4:11407795-11407814 | MS.gene030125:intron | 25.0% |
| !!! | CCTTAAACTGAGTTTTTTAT+TGG | - | chr8.4:11407767-11407786 | MS.gene030125:intron | 25.0% |
| !!! | TTTTTAAGGTTCACATGTTT+GGG | - | chr8.4:11407448-11407467 | MS.gene030125:intron | 25.0% |
| !!! | TTTTTTAAGGTTCACATGTT+TGG | - | chr8.4:11407447-11407466 | MS.gene030125:intron | 25.0% |
| AAAAAATATTACCTCACGAG+GGG | + | chr8.4:11407108-11407127 | None:intergenic | 30.0% | |
| AACTGCATTACCATAAAAGT+TGG | + | chr8.4:11407355-11407374 | None:intergenic | 30.0% | |
| ACCTAAAGAAAAACAGCATA+TGG | + | chr8.4:11407615-11407634 | None:intergenic | 30.0% | |
| AGAAAAACAGCATATGGTAT+TGG | + | chr8.4:11407609-11407628 | None:intergenic | 30.0% | |
| ATAAATTGTAATCAGATCCC+TGG | - | chr8.4:11407695-11407714 | MS.gene030125:intron | 30.0% | |
| ATTGCTTGTAAAAAAAACCC+AGG | + | chr8.4:11407716-11407735 | None:intergenic | 30.0% | |
| CAGTCTTTGTTGAAATCAAT+GGG | - | chr8.4:11406903-11406922 | MS.gene030125:CDS | 30.0% | |
| CATTCAACATATCATCTTTC+AGG | + | chr8.4:11408121-11408140 | None:intergenic | 30.0% | |
| GAAAAACAGCATATGGTATT+GGG | + | chr8.4:11407608-11407627 | None:intergenic | 30.0% | |
| GTAATGCAGTTCTTTACTAA+TGG | - | chr8.4:11407364-11407383 | MS.gene030125:intron | 30.0% | |
| GTAGTTCCATGAATTATTTG+AGG | + | chr8.4:11408060-11408079 | None:intergenic | 30.0% | |
| TAAATTGTAATCAGATCCCT+GGG | - | chr8.4:11407696-11407715 | MS.gene030125:intron | 30.0% | |
| TAGTTACCTCCTTGAATTTA+GGG | - | chr8.4:11407841-11407860 | MS.gene030125:intron | 30.0% | |
| TTGCTTGTAAAAAAAACCCA+GGG | + | chr8.4:11407715-11407734 | None:intergenic | 30.0% | |
| ! | TATTTTCTTAATCTAGTCCC+TGG | + | chr8.4:11407955-11407974 | None:intergenic | 30.0% |
| !! | GTTGAATGTAATTGCTTTTC+AGG | - | chr8.4:11408133-11408152 | MS.gene030125:intron | 30.0% |
| !!! | ACCATATGCTGTTTTTCTTT+AGG | - | chr8.4:11407611-11407630 | MS.gene030125:intron | 30.0% |
| AAAAATATTACCTCACGAGG+GGG | + | chr8.4:11407107-11407126 | None:intergenic | 35.0% | |
| ACATCATCAACATCAATTGC+AGG | + | chr8.4:11407038-11407057 | None:intergenic | 35.0% | |
| AGATGCATTTAATCCTTTGG+TGG | + | chr8.4:11407199-11407218 | None:intergenic | 35.0% | |
| AGGACCGCTGTTAAAAAAAA+AGG | + | chr8.4:11407802-11407821 | None:intergenic | 35.0% | |
| AGTTCGCAATTCCAAACAAA+AGG | - | chr8.4:11408267-11408286 | MS.gene030125:CDS | 35.0% | |
| CGAAACAAAATCTAACGTTC+AGG | + | chr8.4:11407158-11407177 | None:intergenic | 35.0% | |
| CTGGTAGACAAAATGGATAT+CGG | + | chr8.4:11407534-11407553 | None:intergenic | 35.0% | |
| GATGCATTTAATCCTTTGGT+GGG | + | chr8.4:11407198-11407217 | None:intergenic | 35.0% | |
| GCAGTCTTTGTTGAAATCAA+TGG | - | chr8.4:11406902-11406921 | MS.gene030125:CDS | 35.0% | |
| GGACCGCTGTTAAAAAAAAA+GGG | + | chr8.4:11407801-11407820 | None:intergenic | 35.0% | |
| GTAGTTACCTCCTTGAATTT+AGG | - | chr8.4:11407840-11407859 | MS.gene030125:intron | 35.0% | |
| TAAACAAGTTCCTTGAGCTA+TGG | - | chr8.4:11406952-11406971 | MS.gene030125:CDS | 35.0% | |
| TAATGTCCCTAAATTCAAGG+AGG | + | chr8.4:11407850-11407869 | None:intergenic | 35.0% | |
| TATCTTCTTTCCTCTTCTGT+TGG | - | chr8.4:11407311-11407330 | MS.gene030125:intron | 35.0% | |
| TCATCCTCAGTTTCTTCTAT+AGG | + | chr8.4:11408302-11408321 | None:intergenic | 35.0% | |
| TTTGTTGAAATCAATGGGTG+TGG | - | chr8.4:11406908-11406927 | MS.gene030125:CDS | 35.0% | |
| ! | AGGAACTTGTTTATAACACG+AGG | + | chr8.4:11406945-11406964 | None:intergenic | 35.0% |
| ! | TCTGTTTTCTCTTCTTGAGA+CGG | + | chr8.4:11408350-11408369 | None:intergenic | 35.0% |
| ! | TTCTTGGTCTCCAACTTTTA+TGG | - | chr8.4:11407342-11407361 | MS.gene030125:intron | 35.0% |
| ! | TTGGCAATGGTATTTTGTTG+CGG | + | chr8.4:11408181-11408200 | None:intergenic | 35.0% |
| !! | TGATGTTGATGATGTTAAGC+TGG | - | chr8.4:11407043-11407062 | MS.gene030125:CDS | 35.0% |
| !! | TTTTGTTTGGAATTGCGAAC+TGG | + | chr8.4:11408268-11408287 | None:intergenic | 35.0% |
| AGCAATCAATGTGTCCTGAT+CGG | + | chr8.4:11408237-11408256 | None:intergenic | 40.0% | |
| ATCATCAACAAACCCACCAA+AGG | - | chr8.4:11407183-11407202 | MS.gene030125:intron | 40.0% | |
| ATTGGGTTACATGACACACA+AGG | + | chr8.4:11407591-11407610 | None:intergenic | 40.0% | |
| CATTGCCAAAGTCTATAGCA+GGG | - | chr8.4:11408192-11408211 | MS.gene030125:CDS | 40.0% | |
| CGAACCTATAGAAGAAACTG+AGG | - | chr8.4:11408295-11408314 | MS.gene030125:CDS | 40.0% | |
| GGAAATGACACTCTTTGATG+GGG | + | chr8.4:11408386-11408405 | None:intergenic | 40.0% | |
| GGGAAATGACACTCTTTGAT+GGG | + | chr8.4:11408387-11408406 | None:intergenic | 40.0% | |
| TCATGAGCTGGTAGACAAAA+TGG | + | chr8.4:11407541-11407560 | None:intergenic | 40.0% | |
| TGATGTATTAACAGATGCCC+AGG | - | chr8.4:11406989-11407008 | MS.gene030125:CDS | 40.0% | |
| ! | CTGTTTTCTCTTCTTGAGAC+GGG | + | chr8.4:11408349-11408368 | None:intergenic | 40.0% |
| !! | TTGGTGGGTTTGTTGATGAT+TGG | + | chr8.4:11407183-11407202 | None:intergenic | 40.0% |
| AAAGCTAGAGCCAACAGAAG+AGG | + | chr8.4:11407324-11407343 | None:intergenic | 45.0% | |
| AGGAAGACTCGAATATGCCA+AGG | - | chr8.4:11406865-11406884 | MS.gene030125:CDS | 45.0% | |
| CATAGCGATACCATAGCTCA+AGG | + | chr8.4:11406965-11406984 | None:intergenic | 45.0% | |
| CCAGCTCATGAGTTGTAATC+AGG | - | chr8.4:11407550-11407569 | MS.gene030125:intron | 45.0% | |
| CCATTGCCAAAGTCTATAGC+AGG | - | chr8.4:11408191-11408210 | MS.gene030125:CDS | 45.0% | |
| CCTGATTACAACTCATGAGC+TGG | + | chr8.4:11407553-11407572 | None:intergenic | 45.0% | |
| CCTGCTATAGACTTTGGCAA+TGG | + | chr8.4:11408194-11408213 | None:intergenic | 45.0% | |
| GAAGTTGACCTGGGATTGAA+TGG | + | chr8.4:11407069-11407088 | None:intergenic | 45.0% | |
| GCAATCAATGTGTCCTGATC+GGG | + | chr8.4:11408236-11408255 | None:intergenic | 45.0% | |
| GGAAGACTCGAATATGCCAA+GGG | - | chr8.4:11406866-11406885 | MS.gene030125:CDS | 45.0% | |
| GGAATTGCGAACTGGTAGTT+GGG | + | chr8.4:11408260-11408279 | None:intergenic | 45.0% | |
| GGGGAAATGACACTCTTTGA+TGG | + | chr8.4:11408388-11408407 | None:intergenic | 45.0% | |
| TCACATGTTTGGGCTGAGAT+TGG | - | chr8.4:11407458-11407477 | MS.gene030125:intron | 45.0% | |
| TGAGCTATGGTATCGCTATG+TGG | - | chr8.4:11406965-11406984 | MS.gene030125:CDS | 45.0% | |
| TGCACAATCTTTGCATCCCT+TGG | + | chr8.4:11406885-11406904 | None:intergenic | 45.0% | |
| TGGAATTGCGAACTGGTAGT+TGG | + | chr8.4:11408261-11408280 | None:intergenic | 45.0% | |
| TTTCTCTTCTTGAGACGGGT+TGG | + | chr8.4:11408345-11408364 | None:intergenic | 45.0% | |
| ! | AATCCTTTTGGCGTTTAGGC+AGG | + | chr8.4:11408409-11408428 | None:intergenic | 45.0% |
| ! | AGCATGCTCTGAATACACCT+GGG | + | chr8.4:11407009-11407028 | None:intergenic | 45.0% |
| ! | ATCCTTTTGGCGTTTAGGCA+GGG | + | chr8.4:11408408-11408427 | None:intergenic | 45.0% |
| ! | GGTTCGACAGACCTTTTGTT+TGG | + | chr8.4:11408281-11408300 | None:intergenic | 45.0% |
| ! | TTCTCTTCTTGAGACGGGTT+GGG | + | chr8.4:11408344-11408363 | None:intergenic | 45.0% |
| !! | TCTGTTGGCTCTAGCTTTCT+TGG | - | chr8.4:11407326-11407345 | MS.gene030125:intron | 45.0% |
| !!! | TTTTCAGGTGCTTCTAGAGC+TGG | - | chr8.4:11408148-11408167 | MS.gene030125:intron | 45.0% |
| !!! | AAATTATTTTAAGTTTAAAA+GGG | - | chr8.4:11407904-11407923 | MS.gene030125:intron | 5.0% |
| AATATTACCTCACGAGGGGG+TGG | + | chr8.4:11407104-11407123 | None:intergenic | 50.0% | |
| ATCAATGTGTCCTGATCGGG+TGG | + | chr8.4:11408233-11408252 | None:intergenic | 50.0% | |
| CAAAGTCTATAGCAGGGCCT+GGG | - | chr8.4:11408198-11408217 | MS.gene030125:CDS | 50.0% | |
| CAGGTGTATTCAGAGCATGC+TGG | - | chr8.4:11407008-11407027 | MS.gene030125:CDS | 50.0% | |
| CGAGAAGCTGAAGTTGACCT+GGG | + | chr8.4:11407078-11407097 | None:intergenic | 50.0% | |
| TAAGCTGGCCATTCAATCCC+AGG | - | chr8.4:11407058-11407077 | MS.gene030125:CDS | 50.0% | |
| ! | CAGCATGCTCTGAATACACC+TGG | + | chr8.4:11407010-11407029 | None:intergenic | 50.0% |
| ! | TCCTTTTGGCGTTTAGGCAG+GGG | + | chr8.4:11408407-11408426 | None:intergenic | 50.0% |
| CCAAAGTCTATAGCAGGGCC+TGG | - | chr8.4:11408197-11408216 | MS.gene030125:CDS | 55.0% | |
| CCAGGCCCTGCTATAGACTT+TGG | + | chr8.4:11408200-11408219 | None:intergenic | 55.0% | |
| GCGAGAAGCTGAAGTTGACC+TGG | + | chr8.4:11407079-11407098 | None:intergenic | 55.0% | |
| GTTTCCACTTCCACCCGATC+AGG | - | chr8.4:11408220-11408239 | MS.gene030125:CDS | 55.0% | |
| TCCCCTGCCTAAACGCCAAA+AGG | - | chr8.4:11408403-11408422 | MS.gene030125:CDS | 55.0% | |
| !! | AGACGGGTTGGGATCAGCAT+TGG | + | chr8.4:11408333-11408352 | None:intergenic | 55.0% |
| !! | GACGGGTTGGGATCAGCATT+GGG | + | chr8.4:11408332-11408351 | None:intergenic | 55.0% |
| GTGTCCTGATCGGGTGGAAG+TGG | + | chr8.4:11408227-11408246 | None:intergenic | 60.0% | |
| TCGGGTGGAAGTGGAAACCC+AGG | + | chr8.4:11408218-11408237 | None:intergenic | 60.0% | |
| CTCGCAACCACCCCCTCGTG+AGG | - | chr8.4:11407094-11407113 | MS.gene030125:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 11406852 | 11408430 | 11406852 | ID=MS.gene030125 |
| chr8.4 | mRNA | 11406852 | 11408430 | 11406852 | ID=MS.gene030125.t1;Parent=MS.gene030125 |
| chr8.4 | exon | 11408167 | 11408430 | 11408167 | ID=MS.gene030125.t1.exon1;Parent=MS.gene030125.t1 |
| chr8.4 | CDS | 11408167 | 11408430 | 11408167 | ID=cds.MS.gene030125.t1;Parent=MS.gene030125.t1 |
| chr8.4 | exon | 11406852 | 11407127 | 11406852 | ID=MS.gene030125.t1.exon2;Parent=MS.gene030125.t1 |
| chr8.4 | CDS | 11406852 | 11407127 | 11406852 | ID=cds.MS.gene030125.t1;Parent=MS.gene030125.t1 |
| Gene Sequence |
| Protein sequence |
