Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03035.t1 | BAB70616.1 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 7.10E-117 | 429.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03035.t1 | P30109 | 63.6 | 206 | 75 | 0 | 4 | 209 | 3 | 208 | 4.1e-73 | 275.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03035.t1 | Q948X4 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 5.1e-117 | 429.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene03035 | MS.gene07192 | PPI |
MS.gene03035 | MS.gene005619 | PPI |
MS.gene03035 | MS.gene07196 | PPI |
MS.gene03035 | MS.gene20712 | PPI |
MS.gene03035 | MS.gene20711 | PPI |
MS.gene03035 | MS.gene005621 | PPI |
MS.gene07195 | MS.gene03035 | PPI |
MS.gene03035 | MS.gene03036 | PPI |
MS.gene07196 | MS.gene03035 | PPI |
MS.gene03035 | MS.gene20713 | PPI |
MS.gene005621 | MS.gene03035 | PPI |
MS.gene03035 | MS.gene03034 | PPI |
MS.gene03035 | MS.gene07174 | PPI |
MS.gene03035 | MS.gene005620 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03035.t1 | MTR_1g088845 | 94.393 | 214 | 12 | 0 | 1 | 214 | 1 | 214 | 1.99e-151 | 419 |
MS.gene03035.t1 | MTR_1g088840 | 89.252 | 214 | 23 | 0 | 1 | 214 | 1 | 214 | 5.09e-144 | 400 |
MS.gene03035.t1 | MTR_1g088825 | 89.252 | 214 | 23 | 0 | 1 | 214 | 1 | 214 | 5.09e-144 | 400 |
MS.gene03035.t1 | MTR_1g088840 | 88.554 | 166 | 19 | 0 | 49 | 214 | 2 | 167 | 4.81e-108 | 307 |
MS.gene03035.t1 | MTR_1g088840 | 87.288 | 118 | 15 | 0 | 97 | 214 | 1 | 118 | 4.77e-72 | 214 |
MS.gene03035.t1 | MTR_3g064700 | 43.478 | 207 | 116 | 1 | 3 | 208 | 2 | 208 | 4.21e-57 | 180 |
MS.gene03035.t1 | MTR_3g450930 | 42.857 | 210 | 118 | 2 | 3 | 211 | 2 | 210 | 9.91e-57 | 179 |
MS.gene03035.t1 | MTR_1g088850 | 39.423 | 208 | 125 | 1 | 4 | 210 | 3 | 210 | 3.08e-55 | 175 |
MS.gene03035.t1 | MTR_3g450790 | 41.429 | 210 | 121 | 2 | 3 | 211 | 2 | 210 | 4.86e-55 | 175 |
MS.gene03035.t1 | MTR_1g026140 | 40.909 | 220 | 123 | 4 | 1 | 213 | 1 | 220 | 3.27e-54 | 173 |
MS.gene03035.t1 | MTR_5g090920 | 41.429 | 210 | 118 | 4 | 3 | 209 | 2 | 209 | 2.12e-51 | 166 |
MS.gene03035.t1 | MTR_5g090910 | 38.863 | 211 | 126 | 3 | 3 | 211 | 2 | 211 | 2.57e-49 | 160 |
MS.gene03035.t1 | MTR_1g492670 | 89.706 | 68 | 7 | 0 | 147 | 214 | 2 | 69 | 4.30e-40 | 132 |
MS.gene03035.t1 | MTR_5g090910 | 37.415 | 147 | 90 | 2 | 67 | 211 | 8 | 154 | 2.70e-28 | 104 |
MS.gene03035.t1 | MTR_8g098420 | 27.211 | 147 | 107 | 0 | 4 | 150 | 3 | 149 | 2.70e-11 | 60.5 |
MS.gene03035.t1 | MTR_8g098420 | 27.397 | 146 | 106 | 0 | 4 | 149 | 3 | 148 | 7.10e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03035.t1 | AT1G02920 | 59.809 | 209 | 84 | 0 | 1 | 209 | 1 | 209 | 3.77e-86 | 253 |
MS.gene03035.t1 | AT1G02930 | 58.852 | 209 | 85 | 1 | 1 | 209 | 1 | 208 | 1.01e-85 | 253 |
MS.gene03035.t1 | AT1G02930 | 58.852 | 209 | 85 | 1 | 1 | 209 | 1 | 208 | 1.01e-85 | 253 |
MS.gene03035.t1 | AT2G02930 | 58.491 | 212 | 85 | 1 | 1 | 209 | 1 | 212 | 4.23e-85 | 251 |
MS.gene03035.t1 | AT4G02520 | 57.346 | 211 | 87 | 1 | 1 | 208 | 1 | 211 | 1.61e-84 | 249 |
MS.gene03035.t1 | AT2G47730 | 55.610 | 205 | 90 | 1 | 6 | 209 | 54 | 258 | 1.93e-83 | 249 |
MS.gene03035.t1 | AT2G47730 | 55.610 | 205 | 90 | 1 | 6 | 209 | 54 | 258 | 1.93e-83 | 249 |
MS.gene03035.t1 | AT1G02950 | 51.942 | 206 | 98 | 1 | 1 | 205 | 24 | 229 | 4.60e-77 | 232 |
MS.gene03035.t1 | AT1G02950 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.27e-76 | 231 |
MS.gene03035.t1 | AT1G02950 | 52.475 | 202 | 95 | 1 | 5 | 205 | 26 | 227 | 1.27e-76 | 231 |
MS.gene03035.t1 | AT1G02950 | 52.475 | 202 | 95 | 1 | 5 | 205 | 38 | 239 | 1.62e-76 | 231 |
MS.gene03035.t1 | AT1G02940 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 4.17e-67 | 207 |
MS.gene03035.t1 | AT1G02940 | 46.602 | 206 | 109 | 1 | 5 | 209 | 40 | 245 | 4.17e-67 | 207 |
MS.gene03035.t1 | AT1G02940 | 46.602 | 206 | 109 | 1 | 5 | 209 | 53 | 258 | 6.27e-67 | 207 |
MS.gene03035.t1 | AT1G02940 | 46.602 | 206 | 109 | 1 | 5 | 209 | 65 | 270 | 8.25e-67 | 207 |
MS.gene03035.t1 | AT3G62760 | 45.631 | 206 | 111 | 1 | 4 | 208 | 3 | 208 | 5.39e-61 | 190 |
MS.gene03035.t1 | AT1G49860 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 6.70e-57 | 181 |
MS.gene03035.t1 | AT3G03190 | 42.381 | 210 | 120 | 1 | 3 | 211 | 2 | 211 | 7.00e-54 | 172 |
MS.gene03035.t1 | AT5G17220 | 38.095 | 210 | 129 | 1 | 3 | 211 | 2 | 211 | 2.36e-50 | 163 |
MS.gene03035.t1 | AT2G30860 | 37.321 | 209 | 129 | 2 | 3 | 210 | 2 | 209 | 1.18e-46 | 153 |
MS.gene03035.t1 | AT2G30870 | 36.946 | 203 | 127 | 1 | 9 | 210 | 7 | 209 | 3.14e-45 | 150 |
MS.gene03035.t1 | AT1G02950 | 47.887 | 142 | 73 | 1 | 65 | 205 | 60 | 201 | 7.17e-44 | 146 |
MS.gene03035.t1 | AT2G30860 | 35.294 | 153 | 98 | 1 | 3 | 155 | 2 | 153 | 7.21e-29 | 106 |
Find 50 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGGGATTAAGACTTTATT+TGG | 0.143067 | 1.3:-62158965 | MS.gene03035:CDS |
ACTCATTATTGCCATCTTCT+TGG | 0.252577 | 1.3:+62159048 | None:intergenic |
GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1.3:-62159321 | MS.gene03035:intron |
GACTTTATTTGGAATTCCTT+TGG | 0.310575 | 1.3:-62158954 | MS.gene03035:CDS |
CGCATGGTGGCCGTTGAGAT+AGG | 0.336998 | 1.3:+62159586 | None:intergenic |
TCAATACTTGTTTGGGAACT+AGG | 0.337085 | 1.3:-62158983 | MS.gene03035:CDS |
AAGTAGCATCAATACTTGTT+TGG | 0.355376 | 1.3:-62158991 | MS.gene03035:CDS |
GAGGAATGGTGAACACAAAA+AGG | 0.363061 | 1.3:-62159506 | MS.gene03035:CDS |
AGTAGCATCAATACTTGTTT+GGG | 0.373002 | 1.3:-62158990 | MS.gene03035:CDS |
TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1.3:-62159363 | MS.gene03035:intron |
GATCATGAGTATGCTGATAA+GGG | 0.387666 | 1.3:-62159094 | MS.gene03035:CDS |
TGATCATGAGTATGCTGATA+AGG | 0.403067 | 1.3:-62159095 | MS.gene03035:CDS |
CAAGACCTTATGTTAATGCT+TGG | 0.407435 | 1.3:-62158757 | MS.gene03035:CDS |
AAGACCTTATGTTAATGCTT+GGG | 0.420971 | 1.3:-62158756 | MS.gene03035:CDS |
AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1.3:+62159333 | None:intergenic |
ATGATCTTAATTAGGTATCA+TGG | 0.448138 | 1.3:+62158691 | None:intergenic |
GCTTACATTGATTGATATGA+AGG | 0.465911 | 1.3:+62159480 | None:intergenic |
ATGCTACTTTATCGTAGTGT+AGG | 0.467657 | 1.3:+62159005 | None:intergenic |
CAATACTTGTTTGGGAACTA+GGG | 0.472992 | 1.3:-62158982 | MS.gene03035:CDS |
AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1.3:+62159348 | None:intergenic |
TCCTTTGGATTCAAAAGTTG+TGG | 0.481662 | 1.3:-62158939 | MS.gene03035:CDS |
ATCAAGAATGCTATCCAACT+TGG | 0.507885 | 1.3:+62158904 | None:intergenic |
AATGAGTGTGTGGTCGGAAG+TGG | 0.508607 | 1.3:-62159032 | MS.gene03035:CDS |
AGGTGAGTGTTTCACCTTGG+TGG | 0.510447 | 1.3:-62158843 | MS.gene03035:CDS |
GCATGGTGGCCGTTGAGATA+GGG | 0.515923 | 1.3:+62159587 | None:intergenic |
TCAACCCAAGCATTAACATA+AGG | 0.524477 | 1.3:+62158752 | None:intergenic |
ATTGTCTGAATCTAAATACA+TGG | 0.527540 | 1.3:-62158867 | MS.gene03035:CDS |
TATCTCAACGGCCACCATGC+GGG | 0.531171 | 1.3:-62159584 | MS.gene03035:CDS |
GGAAGAGAATGAAGCCAAGT+TGG | 0.538389 | 1.3:-62158918 | MS.gene03035:CDS |
AAAATTGAAATGCAGAGTCA+AGG | 0.547213 | 1.3:-62159135 | MS.gene03035:intron |
AAATTGAAATGCAGAGTCAA+GGG | 0.557402 | 1.3:-62159134 | MS.gene03035:intron |
TTCATCAAGTAGTGAAGAGA+AGG | 0.557567 | 1.3:+62158806 | None:intergenic |
GTAAGCATTAACATGAGGAA+TGG | 0.557734 | 1.3:-62159520 | MS.gene03035:CDS |
AAGCAGTGACTCCAAGAAGA+TGG | 0.558112 | 1.3:-62159059 | MS.gene03035:CDS |
GCAAGTACTTTAGACCAAGC+TGG | 0.578209 | 1.3:+62158713 | None:intergenic |
CTTACATTGATTGATATGAA+GGG | 0.578372 | 1.3:+62159481 | None:intergenic |
GGCAATAATGAGTGTGTGGT+CGG | 0.583453 | 1.3:-62159038 | MS.gene03035:CDS |
ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1.3:-62158727 | MS.gene03035:CDS |
ATCATGAGTATGCTGATAAG+GGG | 0.611479 | 1.3:-62159093 | MS.gene03035:CDS |
GCACGGAAGCCCTATCTCAA+CGG | 0.620985 | 1.3:-62159596 | MS.gene03035:CDS |
CTATCTCAACGGCCACCATG+CGG | 0.624610 | 1.3:-62159585 | MS.gene03035:CDS |
AGTTTGTAAGCATTAACATG+AGG | 0.629431 | 1.3:-62159525 | MS.gene03035:CDS |
GGGAGGTGAGTGTTTCACCT+TGG | 0.632509 | 1.3:-62158846 | MS.gene03035:CDS |
ATGGCAACAATAAAAGTGCA+CGG | 0.649349 | 1.3:-62159613 | MS.gene03035:CDS |
TTGTCTGAATCTAAATACAT+GGG | 0.650116 | 1.3:-62158866 | MS.gene03035:CDS |
CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 1.3:+62159570 | None:intergenic |
TCTGAATCTAAATACATGGG+AGG | 0.678031 | 1.3:-62158863 | MS.gene03035:CDS |
AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 1.3:+62159573 | None:intergenic |
TAAATGATGCAAATCCACCA+AGG | 0.710594 | 1.3:+62158829 | None:intergenic |
AGATGGCAATAATGAGTGTG+TGG | 0.714038 | 1.3:-62159042 | MS.gene03035:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTGTCTGAATCTAAATACA+TGG | - | chr1.3:62159443-62159462 | MS.gene03035:intron | 25.0% |
! | TTGTCTGAATCTAAATACAT+GGG | - | chr1.3:62159444-62159463 | MS.gene03035:intron | 25.0% |
!! | ATCAATTAGTTTGATCAATG+TGG | + | chr1.3:62158924-62158943 | None:intergenic | 25.0% |
!! | CTTACATTGATTGATATGAA+GGG | + | chr1.3:62158832-62158851 | None:intergenic | 25.0% |
AAAATTGAAATGCAGAGTCA+AGG | - | chr1.3:62159175-62159194 | MS.gene03035:intron | 30.0% | |
AAATTGAAATGCAGAGTCAA+GGG | - | chr1.3:62159176-62159195 | MS.gene03035:intron | 30.0% | |
AAGACCTTATGTTAATGCTT+GGG | - | chr1.3:62159554-62159573 | MS.gene03035:CDS | 30.0% | |
AAGTAGCATCAATACTTGTT+TGG | - | chr1.3:62159319-62159338 | MS.gene03035:intron | 30.0% | |
AGTAGCATCAATACTTGTTT+GGG | - | chr1.3:62159320-62159339 | MS.gene03035:intron | 30.0% | |
AGTTTGTAAGCATTAACATG+AGG | - | chr1.3:62158785-62158804 | MS.gene03035:CDS | 30.0% | |
CTAGGGATTAAGACTTTATT+TGG | - | chr1.3:62159345-62159364 | MS.gene03035:CDS | 30.0% | |
! | ATTAGTTTGATCAATGTGGT+TGG | + | chr1.3:62158920-62158939 | None:intergenic | 30.0% |
! | GACTTTATTTGGAATTCCTT+TGG | - | chr1.3:62159356-62159375 | MS.gene03035:intron | 30.0% |
! | GCTTACATTGATTGATATGA+AGG | + | chr1.3:62158833-62158852 | None:intergenic | 30.0% |
AAATCTCCATCTTCAAAAGC+TGG | + | chr1.3:62158980-62158999 | None:intergenic | 35.0% | |
ACTCATTATTGCCATCTTCT+TGG | + | chr1.3:62159265-62159284 | None:intergenic | 35.0% | |
ATCAAGAATGCTATCCAACT+TGG | + | chr1.3:62159409-62159428 | None:intergenic | 35.0% | |
ATCATGAGTATGCTGATAAG+GGG | - | chr1.3:62159217-62159236 | MS.gene03035:intron | 35.0% | |
CAAGACCTTATGTTAATGCT+TGG | - | chr1.3:62159553-62159572 | MS.gene03035:CDS | 35.0% | |
CAATACTTGTTTGGGAACTA+GGG | - | chr1.3:62159328-62159347 | MS.gene03035:CDS | 35.0% | |
GATCATGAGTATGCTGATAA+GGG | - | chr1.3:62159216-62159235 | MS.gene03035:intron | 35.0% | |
GTAAGCATTAACATGAGGAA+TGG | - | chr1.3:62158790-62158809 | MS.gene03035:CDS | 35.0% | |
TAAATGATGCAAATCCACCA+AGG | + | chr1.3:62159484-62159503 | None:intergenic | 35.0% | |
TCAACCCAAGCATTAACATA+AGG | + | chr1.3:62159561-62159580 | None:intergenic | 35.0% | |
TCAATACTTGTTTGGGAACT+AGG | - | chr1.3:62159327-62159346 | MS.gene03035:CDS | 35.0% | |
TCCTTTGGATTCAAAAGTTG+TGG | - | chr1.3:62159371-62159390 | MS.gene03035:intron | 35.0% | |
TCTGAATCTAAATACATGGG+AGG | - | chr1.3:62159447-62159466 | MS.gene03035:intron | 35.0% | |
TGATCATGAGTATGCTGATA+AGG | - | chr1.3:62159215-62159234 | MS.gene03035:intron | 35.0% | |
TTCATCAAGTAGTGAAGAGA+AGG | + | chr1.3:62159507-62159526 | None:intergenic | 35.0% | |
TTCTTTATGTTGCAGCCATT+TGG | - | chr1.3:62158947-62158966 | MS.gene03035:CDS | 35.0% | |
! | ATGGCAACAATAAAAGTGCA+CGG | - | chr1.3:62158697-62158716 | MS.gene03035:CDS | 35.0% |
! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1.3:62158989-62159008 | MS.gene03035:CDS | 35.0% |
! | TCCACAACTTTTGAATCCAA+AGG | + | chr1.3:62159375-62159394 | None:intergenic | 35.0% |
!! | ATGCTACTTTATCGTAGTGT+AGG | + | chr1.3:62159308-62159327 | None:intergenic | 35.0% |
AAAGCTGGAACTTGACCAAA+TGG | + | chr1.3:62158965-62158984 | None:intergenic | 40.0% | |
AGATGGCAATAATGAGTGTG+TGG | - | chr1.3:62159268-62159287 | MS.gene03035:intron | 40.0% | |
GAGGAATGGTGAACACAAAA+AGG | - | chr1.3:62158804-62158823 | MS.gene03035:CDS | 40.0% | |
TCAATGTGGTTGGAACAAGA+AGG | + | chr1.3:62158910-62158929 | None:intergenic | 40.0% | |
!! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1.3:62158971-62158990 | MS.gene03035:CDS | 40.0% |
AAGCAGTGACTCCAAGAAGA+TGG | - | chr1.3:62159251-62159270 | MS.gene03035:intron | 45.0% | |
ATATCACTGCAAGACCAGCT+TGG | - | chr1.3:62159583-62159602 | MS.gene03035:CDS | 45.0% | |
GACACGATATCAAACACACG+TGG | - | chr1.3:62159073-62159092 | MS.gene03035:CDS | 45.0% | |
GCAAGTACTTTAGACCAAGC+TGG | + | chr1.3:62159600-62159619 | None:intergenic | 45.0% | |
GGAAGAGAATGAAGCCAAGT+TGG | - | chr1.3:62159392-62159411 | MS.gene03035:intron | 45.0% | |
GGCAATAATGAGTGTGTGGT+CGG | - | chr1.3:62159272-62159291 | MS.gene03035:intron | 45.0% | |
AATGAGTGTGTGGTCGGAAG+TGG | - | chr1.3:62159278-62159297 | MS.gene03035:intron | 50.0% | |
AGGTGAGTGTTTCACCTTGG+TGG | - | chr1.3:62159467-62159486 | MS.gene03035:intron | 50.0% | |
AGTTGCAGTAACCCGCATGG+TGG | + | chr1.3:62158740-62158759 | None:intergenic | 55.0% | |
CAGAGTTGCAGTAACCCGCA+TGG | + | chr1.3:62158743-62158762 | None:intergenic | 55.0% | |
CTATCTCAACGGCCACCATG+CGG | - | chr1.3:62158725-62158744 | MS.gene03035:CDS | 55.0% | |
GCACGGAAGCCCTATCTCAA+CGG | - | chr1.3:62158714-62158733 | MS.gene03035:CDS | 55.0% | |
GCATGGTGGCCGTTGAGATA+GGG | + | chr1.3:62158726-62158745 | None:intergenic | 55.0% | |
GGGAGGTGAGTGTTTCACCT+TGG | - | chr1.3:62159464-62159483 | MS.gene03035:intron | 55.0% | |
TATCTCAACGGCCACCATGC+GGG | - | chr1.3:62158726-62158745 | MS.gene03035:CDS | 55.0% | |
CGCATGGTGGCCGTTGAGAT+AGG | + | chr1.3:62158727-62158746 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 62158697 | 62159635 | 62158697 | ID=MS.gene03035 |
chr1.3 | mRNA | 62158697 | 62159635 | 62158697 | ID=MS.gene03035.t1;Parent=MS.gene03035 |
chr1.3 | exon | 62159486 | 62159635 | 62159486 | ID=MS.gene03035.t1.exon1;Parent=MS.gene03035.t1 |
chr1.3 | CDS | 62159486 | 62159635 | 62159486 | ID=cds.MS.gene03035.t1;Parent=MS.gene03035.t1 |
chr1.3 | exon | 62159322 | 62159370 | 62159322 | ID=MS.gene03035.t1.exon2;Parent=MS.gene03035.t1 |
chr1.3 | CDS | 62159322 | 62159370 | 62159322 | ID=cds.MS.gene03035.t1;Parent=MS.gene03035.t1 |
chr1.3 | exon | 62158697 | 62159142 | 62158697 | ID=MS.gene03035.t1.exon3;Parent=MS.gene03035.t1 |
chr1.3 | CDS | 62158697 | 62159142 | 62158697 | ID=cds.MS.gene03035.t1;Parent=MS.gene03035.t1 |
Gene Sequence |
Protein sequence |