Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20711.t1 | XP_013469193.1 | 97.7 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 1.80E-120 | 441.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20711.t1 | Q9LZI9 | 56.3 | 213 | 93 | 0 | 1 | 213 | 1 | 213 | 3.0e-71 | 269.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20711.t1 | A0A072VNL4 | 97.7 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 1.3e-120 | 441.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20711.t1 | MTR_1g088850 | 97.727 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 6.36e-165 | 453 |
MS.gene20711.t1 | MTR_3g450790 | 48.571 | 210 | 105 | 3 | 1 | 209 | 1 | 208 | 6.40e-69 | 210 |
MS.gene20711.t1 | MTR_3g450930 | 45.238 | 210 | 112 | 3 | 1 | 209 | 1 | 208 | 1.19e-61 | 192 |
MS.gene20711.t1 | MTR_1g088845 | 41.429 | 210 | 122 | 1 | 3 | 212 | 4 | 212 | 3.22e-57 | 181 |
MS.gene20711.t1 | MTR_1g088840 | 40.000 | 210 | 125 | 1 | 3 | 212 | 4 | 212 | 2.23e-56 | 178 |
MS.gene20711.t1 | MTR_1g088825 | 40.000 | 210 | 125 | 1 | 3 | 212 | 4 | 212 | 2.23e-56 | 178 |
MS.gene20711.t1 | MTR_5g090920 | 43.602 | 211 | 115 | 4 | 1 | 209 | 1 | 209 | 4.26e-56 | 177 |
MS.gene20711.t1 | MTR_3g064700 | 42.584 | 209 | 118 | 2 | 1 | 208 | 1 | 208 | 1.15e-54 | 174 |
MS.gene20711.t1 | MTR_5g090910 | 41.981 | 212 | 117 | 5 | 1 | 209 | 1 | 209 | 1.93e-53 | 171 |
MS.gene20711.t1 | MTR_1g026140 | 37.736 | 212 | 127 | 1 | 3 | 209 | 5 | 216 | 6.95e-51 | 164 |
MS.gene20711.t1 | MTR_1g088840 | 40.244 | 164 | 97 | 1 | 49 | 212 | 3 | 165 | 9.12e-42 | 139 |
MS.gene20711.t1 | MTR_5g090910 | 40.816 | 147 | 82 | 4 | 66 | 209 | 8 | 152 | 1.31e-28 | 105 |
MS.gene20711.t1 | MTR_1g088840 | 38.596 | 114 | 70 | 0 | 99 | 212 | 3 | 116 | 9.57e-26 | 97.1 |
MS.gene20711.t1 | MTR_3g058940 | 25.701 | 214 | 148 | 4 | 1 | 212 | 1 | 205 | 1.64e-13 | 68.9 |
MS.gene20711.t1 | MTR_4g134770 | 25.439 | 228 | 146 | 5 | 1 | 219 | 1 | 213 | 2.82e-13 | 68.6 |
MS.gene20711.t1 | MTR_1g492670 | 43.939 | 66 | 37 | 0 | 147 | 212 | 2 | 67 | 3.44e-13 | 62.8 |
MS.gene20711.t1 | MTR_2g005570 | 26.442 | 208 | 134 | 5 | 11 | 212 | 13 | 207 | 2.91e-11 | 62.4 |
MS.gene20711.t1 | MTR_2g005570 | 26.442 | 208 | 134 | 5 | 11 | 212 | 13 | 207 | 4.21e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20711.t1 | AT3G62760 | 55.300 | 217 | 97 | 0 | 1 | 217 | 1 | 217 | 2.56e-94 | 275 |
MS.gene20711.t1 | AT1G02930 | 42.788 | 208 | 117 | 1 | 2 | 209 | 3 | 208 | 3.53e-59 | 185 |
MS.gene20711.t1 | AT1G02930 | 42.788 | 208 | 117 | 1 | 2 | 209 | 3 | 208 | 3.53e-59 | 185 |
MS.gene20711.t1 | AT1G02920 | 42.308 | 208 | 119 | 1 | 2 | 209 | 3 | 209 | 4.19e-57 | 180 |
MS.gene20711.t1 | AT2G30860 | 43.721 | 215 | 118 | 3 | 1 | 214 | 1 | 213 | 9.18e-55 | 174 |
MS.gene20711.t1 | AT2G47730 | 41.463 | 205 | 120 | 0 | 5 | 209 | 54 | 258 | 1.08e-53 | 173 |
MS.gene20711.t1 | AT2G47730 | 41.463 | 205 | 120 | 0 | 5 | 209 | 54 | 258 | 1.08e-53 | 173 |
MS.gene20711.t1 | AT4G02520 | 40.476 | 210 | 121 | 2 | 2 | 208 | 3 | 211 | 2.38e-53 | 171 |
MS.gene20711.t1 | AT2G02930 | 39.524 | 210 | 125 | 1 | 2 | 209 | 3 | 212 | 1.46e-52 | 169 |
MS.gene20711.t1 | AT2G30870 | 43.541 | 209 | 115 | 3 | 1 | 208 | 1 | 207 | 2.41e-52 | 168 |
MS.gene20711.t1 | AT1G02950 | 35.922 | 206 | 132 | 0 | 1 | 206 | 23 | 228 | 9.82e-50 | 162 |
MS.gene20711.t1 | AT1G02950 | 35.922 | 206 | 132 | 0 | 1 | 206 | 23 | 228 | 9.82e-50 | 162 |
MS.gene20711.t1 | AT1G02950 | 35.922 | 206 | 132 | 0 | 1 | 206 | 35 | 240 | 1.36e-49 | 162 |
MS.gene20711.t1 | AT1G02950 | 36.453 | 203 | 129 | 0 | 4 | 206 | 28 | 230 | 1.64e-49 | 162 |
MS.gene20711.t1 | AT1G49860 | 41.000 | 200 | 113 | 3 | 14 | 209 | 16 | 214 | 2.25e-48 | 159 |
MS.gene20711.t1 | AT3G03190 | 37.143 | 210 | 130 | 2 | 1 | 209 | 1 | 209 | 2.72e-48 | 158 |
MS.gene20711.t1 | AT5G17220 | 32.857 | 210 | 139 | 2 | 1 | 209 | 1 | 209 | 3.76e-45 | 150 |
MS.gene20711.t1 | AT1G02940 | 35.922 | 206 | 132 | 0 | 4 | 209 | 40 | 245 | 8.94e-45 | 150 |
MS.gene20711.t1 | AT1G02940 | 35.922 | 206 | 132 | 0 | 4 | 209 | 40 | 245 | 8.94e-45 | 150 |
MS.gene20711.t1 | AT1G02940 | 35.922 | 206 | 132 | 0 | 4 | 209 | 65 | 270 | 1.48e-44 | 150 |
MS.gene20711.t1 | AT1G02940 | 35.922 | 206 | 132 | 0 | 4 | 209 | 53 | 258 | 1.60e-44 | 150 |
MS.gene20711.t1 | AT2G30860 | 40.645 | 155 | 90 | 2 | 1 | 155 | 1 | 153 | 2.14e-32 | 115 |
MS.gene20711.t1 | AT1G02950 | 30.769 | 143 | 99 | 0 | 64 | 206 | 60 | 202 | 2.02e-26 | 101 |
Find 43 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACTGACTTGTTTGGTTCT+TGG | 0.209731 | 1.2:-66492539 | None:intergenic |
ATCATGGCACTCAAGATTTA+TGG | 0.277244 | 1.2:+66491748 | None:intergenic |
CTTTCAATCACTGACTTGTT+TGG | 0.302853 | 1.2:-66492546 | None:intergenic |
AATAGTGAGTTGAAGATATA+TGG | 0.317000 | 1.2:-66492668 | None:intergenic |
ACAAAGTATTCATAGATAAT+TGG | 0.324344 | 1.2:-66492501 | None:intergenic |
TTCAGCTACATATGAGGTTA+TGG | 0.327058 | 1.2:-66492367 | None:intergenic |
GATGATGATCTCACCCTCTT+TGG | 0.366830 | 1.2:+66492000 | MS.gene20711:CDS |
CAATGAACGGATTCATGTTA+AGG | 0.371100 | 1.2:+66492719 | MS.gene20711:CDS |
TTTGGTTCTTGGCCTTGAAA+TGG | 0.372478 | 1.2:-66492528 | None:intergenic |
AAATTGGACCTGATTTGATT+AGG | 0.392685 | 1.2:+66492400 | MS.gene20711:CDS |
GTTGTGGGAGGTATAACTTT+TGG | 0.398771 | 1.2:+66492783 | MS.gene20711:CDS |
TACTTTGTGGCTCCATTTCA+AGG | 0.400504 | 1.2:+66492516 | MS.gene20711:CDS |
CTTACGTTCTTGTTGAGAAA+AGG | 0.412482 | 1.2:-66491880 | None:intergenic |
AGCACAACAAAGTACCTTGC+AGG | 0.416067 | 1.2:+66492618 | MS.gene20711:CDS |
GGTGGGAAGATATATCTTCT+AGG | 0.418080 | 1.2:+66492745 | MS.gene20711:CDS |
TCTTTGTTCATGCAGCCCTT+TGG | 0.422040 | 1.2:+66491958 | MS.gene20711:intron |
TGACACAAAAGAAGCTTCAT+TGG | 0.444080 | 1.2:+66492428 | MS.gene20711:CDS |
TAGATAATTGGTGTGACTGC+AGG | 0.445936 | 1.2:-66492489 | None:intergenic |
GTACTTTGTTGTGCTTAGCT+TGG | 0.454755 | 1.2:-66492610 | None:intergenic |
AATTATCTATGAATACTTTG+TGG | 0.456418 | 1.2:+66492503 | MS.gene20711:CDS |
AGATCATCATCTTCAAGTAC+TGG | 0.467902 | 1.2:-66491988 | None:intergenic |
GGCACTCAAGATTTATGGTC+TGG | 0.469062 | 1.2:+66491753 | MS.gene20711:CDS |
TCATTGTGCCTAATCAAATC+AGG | 0.483923 | 1.2:-66492408 | None:intergenic |
AACGGATTCATGTTAAGGCT+TGG | 0.491423 | 1.2:+66492724 | MS.gene20711:CDS |
ACGAGTGGTGTTTGTGGACA+TGG | 0.514578 | 1.2:-66491776 | None:intergenic |
CATGGCACGAGTGGTGTTTG+TGG | 0.516433 | 1.2:-66491782 | None:intergenic |
GATTCATGTTAAGGCTTGGT+GGG | 0.536813 | 1.2:+66492728 | MS.gene20711:CDS |
GGATTCATGTTAAGGCTTGG+TGG | 0.539482 | 1.2:+66492727 | MS.gene20711:CDS |
GCACAACAAAGTACCTTGCA+GGG | 0.549960 | 1.2:+66492619 | MS.gene20711:CDS |
AGATAATTGGTGTGACTGCA+GGG | 0.554379 | 1.2:-66492488 | None:intergenic |
AAAAGAAAGCATACCAAAGA+GGG | 0.568007 | 1.2:-66492013 | None:intergenic |
TCAGAAGCAAACACATTGAC+TGG | 0.571377 | 1.2:-66491844 | None:intergenic |
ACGTTCTTGTTGAGAAAAGG+AGG | 0.590052 | 1.2:-66491877 | None:intergenic |
AGTACTGGAATCAAACCAAA+GGG | 0.590562 | 1.2:-66491973 | None:intergenic |
AAGCTTCATTGGTCAAAATG+TGG | 0.591373 | 1.2:+66492439 | MS.gene20711:CDS |
GTGCTTCAATGATCAATGAA+CGG | 0.607609 | 1.2:+66492706 | MS.gene20711:CDS |
ATTGATCATTGAAGCACAAG+GGG | 0.612739 | 1.2:-66492700 | None:intergenic |
AAGTACTGGAATCAAACCAA+AGG | 0.617639 | 1.2:-66491974 | None:intergenic |
TCATTGATCATTGAAGCACA+AGG | 0.633784 | 1.2:-66492702 | None:intergenic |
CATTGATCATTGAAGCACAA+GGG | 0.636560 | 1.2:-66492701 | None:intergenic |
CACAACAAAGTACCTTGCAG+GGG | 0.682868 | 1.2:+66492620 | MS.gene20711:CDS |
TAGACATATCATGGCACGAG+TGG | 0.683620 | 1.2:-66491791 | None:intergenic |
ATTGGTCAAAATGTGGACAG+AGG | 0.694356 | 1.2:+66492446 | MS.gene20711:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTCGAATAAACTTAAA+GGG | - | chr1.2:66492078-66492097 | None:intergenic | 15.0% |
!!! | TATTTTTCGAATAAACTTAA+AGG | - | chr1.2:66492079-66492098 | None:intergenic | 15.0% |
!! | AATTATCTATGAATACTTTG+TGG | + | chr1.2:66492503-66492522 | MS.gene20711:CDS | 20.0% |
!! | ATATGTAGCTGAAAAATATA+AGG | + | chr1.2:66492377-66492396 | MS.gene20711:CDS | 20.0% |
!! | GAATTAGTAACAAAAATTAG+AGG | - | chr1.2:66492212-66492231 | None:intergenic | 20.0% |
!!! | ACAAAGTATTCATAGATAAT+TGG | - | chr1.2:66492504-66492523 | None:intergenic | 20.0% |
! | AAAAGGTTACATATCATTAC+AGG | - | chr1.2:66492310-66492329 | None:intergenic | 25.0% |
! | AATCAAGCAAAAATACTACT+AGG | + | chr1.2:66492126-66492145 | MS.gene20711:intron | 25.0% |
! | ATCATTACAGGTTCAAAAAA+TGG | - | chr1.2:66492298-66492317 | None:intergenic | 25.0% |
! | GCTGAAAAATATAAGGAAAT+TGG | + | chr1.2:66492384-66492403 | MS.gene20711:CDS | 25.0% |
!! | AATAGTGAGTTGAAGATATA+TGG | - | chr1.2:66492671-66492690 | None:intergenic | 25.0% |
!! | TTTTTCATGTAGACATATCA+TGG | - | chr1.2:66491803-66491822 | None:intergenic | 25.0% |
!!! | ATATTTTTCAGCTACATATG+AGG | - | chr1.2:66492376-66492395 | None:intergenic | 25.0% |
!!! | TAACCTTTTTTATGTGACTA+TGG | + | chr1.2:66492321-66492340 | MS.gene20711:intron | 25.0% |
AGTCCATAGTCACATAAAAA+AGG | - | chr1.2:66492327-66492346 | None:intergenic | 30.0% | |
TTTCGAATAAACTTAAAGGG+TGG | - | chr1.2:66492075-66492094 | None:intergenic | 30.0% | |
! | AAAAAGAAAGCATACCAAAG+AGG | - | chr1.2:66492017-66492036 | None:intergenic | 30.0% |
! | AAAAGAAAGCATACCAAAGA+GGG | - | chr1.2:66492016-66492035 | None:intergenic | 30.0% |
! | AAATTGGACCTGATTTGATT+AGG | + | chr1.2:66492400-66492419 | MS.gene20711:CDS | 30.0% |
AAGCTTCATTGGTCAAAATG+TGG | + | chr1.2:66492439-66492458 | MS.gene20711:CDS | 35.0% | |
AGATCATCATCTTCAAGTAC+TGG | - | chr1.2:66491991-66492010 | None:intergenic | 35.0% | |
ATTGATCATTGAAGCACAAG+GGG | - | chr1.2:66492703-66492722 | None:intergenic | 35.0% | |
CATTGATCATTGAAGCACAA+GGG | - | chr1.2:66492704-66492723 | None:intergenic | 35.0% | |
CTTACGTTCTTGTTGAGAAA+AGG | - | chr1.2:66491883-66491902 | None:intergenic | 35.0% | |
GTGCTTCAATGATCAATGAA+CGG | + | chr1.2:66492706-66492725 | MS.gene20711:CDS | 35.0% | |
TCATTGATCATTGAAGCACA+AGG | - | chr1.2:66492705-66492724 | None:intergenic | 35.0% | |
TCATTGTGCCTAATCAAATC+AGG | - | chr1.2:66492411-66492430 | None:intergenic | 35.0% | |
TCTGCTTTCCAAAAAGTTGT+GGG | + | chr1.2:66492768-66492787 | MS.gene20711:CDS | 35.0% | |
TGACACAAAAGAAGCTTCAT+TGG | + | chr1.2:66492428-66492447 | MS.gene20711:CDS | 35.0% | |
TTCAGCTACATATGAGGTTA+TGG | - | chr1.2:66492370-66492389 | None:intergenic | 35.0% | |
! | AGTACTGGAATCAAACCAAA+GGG | - | chr1.2:66491976-66491995 | None:intergenic | 35.0% |
! | CAATGAACGGATTCATGTTA+AGG | + | chr1.2:66492719-66492738 | MS.gene20711:CDS | 35.0% |
! | TTATACCTCCCACAACTTTT+TGG | - | chr1.2:66492779-66492798 | None:intergenic | 35.0% |
!! | AAGTACTGGAATCAAACCAA+AGG | - | chr1.2:66491977-66491996 | None:intergenic | 35.0% |
!! | CTTTCAATCACTGACTTGTT+TGG | - | chr1.2:66492549-66492568 | None:intergenic | 35.0% |
ACGTTCTTGTTGAGAAAAGG+AGG | - | chr1.2:66491880-66491899 | None:intergenic | 40.0% | |
AGATAATTGGTGTGACTGCA+GGG | - | chr1.2:66492491-66492510 | None:intergenic | 40.0% | |
ATTGGTCAAAATGTGGACAG+AGG | + | chr1.2:66492446-66492465 | MS.gene20711:CDS | 40.0% | |
GACTATAAAAATCCCCTGCA+AGG | - | chr1.2:66492635-66492654 | None:intergenic | 40.0% | |
GGTGGGAAGATATATCTTCT+AGG | + | chr1.2:66492745-66492764 | MS.gene20711:CDS | 40.0% | |
GTCTGCTTTCCAAAAAGTTG+TGG | + | chr1.2:66492767-66492786 | MS.gene20711:CDS | 40.0% | |
TACTTTGTGGCTCCATTTCA+AGG | + | chr1.2:66492516-66492535 | MS.gene20711:CDS | 40.0% | |
TAGATAATTGGTGTGACTGC+AGG | - | chr1.2:66492492-66492511 | None:intergenic | 40.0% | |
TCAGAAGCAAACACATTGAC+TGG | - | chr1.2:66491847-66491866 | None:intergenic | 40.0% | |
TGACATGCATGCATGATTTG+TGG | - | chr1.2:66492253-66492272 | None:intergenic | 40.0% | |
! | AACGGATTCATGTTAAGGCT+TGG | + | chr1.2:66492724-66492743 | MS.gene20711:CDS | 40.0% |
! | GATTCATGTTAAGGCTTGGT+GGG | + | chr1.2:66492728-66492747 | MS.gene20711:CDS | 40.0% |
! | GCATGATTTGTGGTCTAGAT+TGG | - | chr1.2:66492243-66492262 | None:intergenic | 40.0% |
! | GTACTTTGTTGTGCTTAGCT+TGG | - | chr1.2:66492613-66492632 | None:intergenic | 40.0% |
!! | GTTGTGGGAGGTATAACTTT+TGG | + | chr1.2:66492783-66492802 | MS.gene20711:CDS | 40.0% |
!! | TCACTGACTTGTTTGGTTCT+TGG | - | chr1.2:66492542-66492561 | None:intergenic | 40.0% |
!! | TTTGGTTCTTGGCCTTGAAA+TGG | - | chr1.2:66492531-66492550 | None:intergenic | 40.0% |
GATGATGATCTCACCCTCTT+TGG | + | chr1.2:66492000-66492019 | MS.gene20711:CDS | 45.0% | |
GCTTTCCAAAAAGTTGTGGG+AGG | + | chr1.2:66492771-66492790 | MS.gene20711:CDS | 45.0% | |
GGATTCATGTTAAGGCTTGG+TGG | + | chr1.2:66492727-66492746 | MS.gene20711:CDS | 45.0% | |
GGCACTCAAGATTTATGGTC+TGG | + | chr1.2:66491753-66491772 | MS.gene20711:CDS | 45.0% | |
TAGACATATCATGGCACGAG+TGG | - | chr1.2:66491794-66491813 | None:intergenic | 45.0% | |
TCTTTGTTCATGCAGCCCTT+TGG | + | chr1.2:66491958-66491977 | MS.gene20711:intron | 45.0% | |
! | AGCACAACAAAGTACCTTGC+AGG | + | chr1.2:66492618-66492637 | MS.gene20711:CDS | 45.0% |
! | CACAACAAAGTACCTTGCAG+GGG | + | chr1.2:66492620-66492639 | MS.gene20711:CDS | 45.0% |
! | GCACAACAAAGTACCTTGCA+GGG | + | chr1.2:66492619-66492638 | MS.gene20711:CDS | 45.0% |
ACGAGTGGTGTTTGTGGACA+TGG | - | chr1.2:66491779-66491798 | None:intergenic | 50.0% | |
CATGGCACGAGTGGTGTTTG+TGG | - | chr1.2:66491785-66491804 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 66491751 | 66492824 | 66491751 | ID=MS.gene20711 |
chr1.2 | mRNA | 66491751 | 66492824 | 66491751 | ID=MS.gene20711.t1;Parent=MS.gene20711 |
chr1.2 | exon | 66491751 | 66491897 | 66491751 | ID=MS.gene20711.t1.exon1;Parent=MS.gene20711.t1 |
chr1.2 | CDS | 66491751 | 66491897 | 66491751 | ID=cds.MS.gene20711.t1;Parent=MS.gene20711.t1 |
chr1.2 | exon | 66491973 | 66492021 | 66491973 | ID=MS.gene20711.t1.exon2;Parent=MS.gene20711.t1 |
chr1.2 | CDS | 66491973 | 66492021 | 66491973 | ID=cds.MS.gene20711.t1;Parent=MS.gene20711.t1 |
chr1.2 | exon | 66492358 | 66492824 | 66492358 | ID=MS.gene20711.t1.exon3;Parent=MS.gene20711.t1 |
chr1.2 | CDS | 66492358 | 66492824 | 66492358 | ID=cds.MS.gene20711.t1;Parent=MS.gene20711.t1 |
Gene Sequence |
Protein sequence |