Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07196.t1 | XP_013469188.1 | 92.5 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 9.30E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07196.t1 | P46423 | 66.0 | 206 | 70 | 0 | 4 | 209 | 3 | 208 | 4.9e-74 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07196.t1 | A0A072VNK7 | 92.5 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 6.7e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07195 | MS.gene07196 | PPI |
| MS.gene07196 | MS.gene07192 | PPI |
| MS.gene07196 | MS.gene07174 | PPI |
| MS.gene03035 | MS.gene07196 | PPI |
| MS.gene07196 | MS.gene005619 | PPI |
| MS.gene07196 | MS.gene20712 | PPI |
| MS.gene07196 | MS.gene03035 | PPI |
| MS.gene07196 | MS.gene20711 | PPI |
| MS.gene07196 | MS.gene005621 | PPI |
| MS.gene005621 | MS.gene07196 | PPI |
| MS.gene07196 | MS.gene03036 | PPI |
| MS.gene07196 | MS.gene03034 | PPI |
| MS.gene07196 | MS.gene005620 | PPI |
| MS.gene07196 | MS.gene20713 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07196.t1 | MTR_1g088840 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.65e-149 | 414 |
| MS.gene07196.t1 | MTR_1g088825 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.65e-149 | 414 |
| MS.gene07196.t1 | MTR_1g088845 | 86.916 | 214 | 28 | 0 | 1 | 214 | 1 | 214 | 1.55e-139 | 389 |
| MS.gene07196.t1 | MTR_1g088840 | 91.566 | 166 | 14 | 0 | 49 | 214 | 2 | 167 | 3.83e-112 | 318 |
| MS.gene07196.t1 | MTR_1g088840 | 92.373 | 118 | 9 | 0 | 97 | 214 | 1 | 118 | 3.62e-77 | 228 |
| MS.gene07196.t1 | MTR_3g064700 | 46.117 | 206 | 110 | 1 | 4 | 208 | 3 | 208 | 3.00e-60 | 188 |
| MS.gene07196.t1 | MTR_3g450930 | 44.498 | 209 | 114 | 2 | 4 | 211 | 3 | 210 | 4.70e-59 | 185 |
| MS.gene07196.t1 | MTR_3g450790 | 44.019 | 209 | 115 | 2 | 4 | 211 | 3 | 210 | 3.63e-58 | 182 |
| MS.gene07196.t1 | MTR_1g088850 | 39.713 | 209 | 125 | 1 | 3 | 210 | 2 | 210 | 1.57e-56 | 179 |
| MS.gene07196.t1 | MTR_5g090920 | 44.019 | 209 | 112 | 4 | 4 | 209 | 3 | 209 | 8.61e-56 | 177 |
| MS.gene07196.t1 | MTR_1g026140 | 42.130 | 216 | 119 | 3 | 4 | 213 | 5 | 220 | 2.46e-55 | 176 |
| MS.gene07196.t1 | MTR_5g090910 | 41.905 | 210 | 119 | 3 | 4 | 211 | 3 | 211 | 1.30e-54 | 174 |
| MS.gene07196.t1 | MTR_1g492670 | 86.765 | 68 | 9 | 0 | 147 | 214 | 2 | 69 | 6.11e-39 | 129 |
| MS.gene07196.t1 | MTR_5g090910 | 40.136 | 147 | 86 | 2 | 67 | 211 | 8 | 154 | 3.59e-32 | 114 |
| MS.gene07196.t1 | MTR_3g088635 | 23.013 | 239 | 152 | 5 | 4 | 210 | 1 | 239 | 2.96e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07196.t1 | AT1G02920 | 63.158 | 209 | 77 | 0 | 1 | 209 | 1 | 209 | 5.04e-89 | 261 |
| MS.gene07196.t1 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.37e-88 | 258 |
| MS.gene07196.t1 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.37e-88 | 258 |
| MS.gene07196.t1 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.82e-86 | 256 |
| MS.gene07196.t1 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.82e-86 | 256 |
| MS.gene07196.t1 | AT4G02520 | 59.242 | 211 | 83 | 1 | 1 | 208 | 1 | 211 | 6.27e-85 | 251 |
| MS.gene07196.t1 | AT2G02930 | 58.962 | 212 | 84 | 1 | 1 | 209 | 1 | 212 | 3.66e-83 | 246 |
| MS.gene07196.t1 | AT1G02950 | 54.369 | 206 | 93 | 1 | 1 | 205 | 24 | 229 | 5.48e-78 | 234 |
| MS.gene07196.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.61e-77 | 232 |
| MS.gene07196.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.61e-77 | 232 |
| MS.gene07196.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 38 | 239 | 2.86e-77 | 233 |
| MS.gene07196.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.56e-66 | 205 |
| MS.gene07196.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.56e-66 | 205 |
| MS.gene07196.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 65 | 270 | 3.54e-66 | 205 |
| MS.gene07196.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 53 | 258 | 4.34e-66 | 205 |
| MS.gene07196.t1 | AT3G62760 | 47.826 | 207 | 107 | 1 | 3 | 208 | 2 | 208 | 2.80e-63 | 196 |
| MS.gene07196.t1 | AT1G49860 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 7.64e-58 | 183 |
| MS.gene07196.t1 | AT3G03190 | 44.498 | 209 | 115 | 1 | 4 | 211 | 3 | 211 | 5.66e-57 | 180 |
| MS.gene07196.t1 | AT5G17220 | 39.234 | 209 | 126 | 1 | 4 | 211 | 3 | 211 | 6.49e-52 | 167 |
| MS.gene07196.t1 | AT2G30860 | 40.385 | 208 | 122 | 2 | 4 | 210 | 3 | 209 | 5.72e-50 | 162 |
| MS.gene07196.t1 | AT2G30870 | 38.424 | 203 | 124 | 1 | 9 | 210 | 7 | 209 | 2.74e-46 | 152 |
| MS.gene07196.t1 | AT1G02950 | 50.704 | 142 | 69 | 1 | 65 | 205 | 60 | 201 | 4.50e-44 | 147 |
| MS.gene07196.t1 | AT2G30860 | 37.500 | 152 | 94 | 1 | 4 | 155 | 3 | 153 | 5.86e-31 | 112 |
| MS.gene07196.t1 | AT5G41210 | 25.980 | 204 | 145 | 2 | 1 | 198 | 1 | 204 | 1.45e-11 | 62.4 |
| MS.gene07196.t1 | AT5G41240 | 29.208 | 202 | 131 | 5 | 4 | 196 | 3 | 201 | 3.80e-11 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCATTATTGCTATCTTCT+TGG | 0.169803 | 1.4:+70486528 | None:intergenic |
| TTGGGGATAAAGAGTTTATT+TGG | 0.186179 | 1.4:-70486445 | MS.gene07196:CDS |
| AGAGTCACCTCCCAAGTATT+TGG | 0.266829 | 1.4:+70486336 | None:intergenic |
| CTCCAAGAAGATAGCAATAA+TGG | 0.269830 | 1.4:-70486530 | MS.gene07196:CDS |
| TCAAAACTTGTTCGGGAATT+GGG | 0.278093 | 1.4:-70486463 | MS.gene07196:CDS |
| ATCAAAACTTGTTCGGGAAT+TGG | 0.285433 | 1.4:-70486464 | MS.gene07196:CDS |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1.4:-70486947 | MS.gene07196:intron |
| TCGTGATTCAAACAATTTCT+TGG | 0.300130 | 1.4:+70486255 | None:intergenic |
| GAAGAATGGAGAACACAAAA+AGG | 0.349354 | 1.4:-70487147 | MS.gene07196:CDS |
| GGAGTCATTGCTTGTTAACT+TGG | 0.352335 | 1.4:+70486549 | None:intergenic |
| CGCATGGTGGCCGTTGAGTA+GGG | 0.361457 | 1.4:+70487227 | None:intergenic |
| AACAATGAGTATGCTGATAA+GGG | 0.368137 | 1.4:-70486574 | MS.gene07196:CDS |
| TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1.4:-70486989 | MS.gene07196:intron |
| TAACAATGAGTATGCTGATA+AGG | 0.387390 | 1.4:-70486575 | MS.gene07196:CDS |
| AGTAGCATCAAAACTTGTTC+GGG | 0.393847 | 1.4:-70486470 | MS.gene07196:CDS |
| AAGTAGCATCAAAACTTGTT+CGG | 0.398448 | 1.4:-70486471 | MS.gene07196:CDS |
| GAGTTTATTTGGAATTCCTT+TGG | 0.399412 | 1.4:-70486434 | MS.gene07196:CDS |
| CCGCATGGTGGCCGTTGAGT+AGG | 0.403862 | 1.4:+70487226 | None:intergenic |
| TCCAAGAAGATAGCAATAAT+GGG | 0.404293 | 1.4:-70486529 | MS.gene07196:CDS |
| GTTAACATTAACTTGAAGAA+TGG | 0.418899 | 1.4:-70487161 | MS.gene07196:CDS |
| AGGTGACTCTTTCACCTTGG+TGG | 0.445525 | 1.4:-70486323 | MS.gene07196:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1.4:+70486959 | None:intergenic |
| ACTGTCTTAATTAGGTATCA+TGG | 0.449391 | 1.4:+70486171 | None:intergenic |
| GCTTACATTGAGTGAAATGA+AGG | 0.454820 | 1.4:+70487121 | None:intergenic |
| CACGATCTCATGTTAGTGCT+TGG | 0.456189 | 1.4:-70486237 | MS.gene07196:CDS |
| AAAATTGAAATGCAGAATCA+AGG | 0.457301 | 1.4:-70486615 | MS.gene07196:intron |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1.4:+70486974 | None:intergenic |
| ACGATCTCATGTTAGTGCTT+GGG | 0.482947 | 1.4:-70486236 | MS.gene07196:CDS |
| ATTGTCGGAGTCCAAATACT+TGG | 0.498612 | 1.4:-70486347 | MS.gene07196:CDS |
| ATGCTACTTGATCGAAGTGT+TGG | 0.510802 | 1.4:+70486485 | None:intergenic |
| GGGAGGTGACTCTTTCACCT+TGG | 0.520363 | 1.4:-70486326 | MS.gene07196:CDS |
| TGAAGAGAATGAAGCCAAGT+TGG | 0.524273 | 1.4:-70486398 | MS.gene07196:CDS |
| TTCATCAAGTAATGAAAAGT+AGG | 0.527654 | 1.4:+70486286 | None:intergenic |
| ATCAAGAATGCTATCCAACT+TGG | 0.528639 | 1.4:+70486384 | None:intergenic |
| CTACTCAACGGCCACCATGC+GGG | 0.529590 | 1.4:-70487225 | MS.gene07196:CDS |
| CAAAACTTGTTCGGGAATTG+GGG | 0.535983 | 1.4:-70486462 | MS.gene07196:CDS |
| TGTGTATGAGAAAAGATTGT+CGG | 0.551593 | 1.4:-70486362 | MS.gene07196:CDS |
| CTTAATTAGGTATCATGGCA+AGG | 0.566951 | 1.4:+70486176 | None:intergenic |
| AAATTGAAATGCAGAATCAA+GGG | 0.575285 | 1.4:-70486614 | MS.gene07196:intron |
| GCAAGGACTTTAGACCAAGC+TGG | 0.580505 | 1.4:+70486193 | None:intergenic |
| GCATGGTGGCCGTTGAGTAG+GGG | 0.589594 | 1.4:+70487228 | None:intergenic |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1.4:-70486207 | MS.gene07196:CDS |
| ATCTCATGTTAGTGCTTGGG+TGG | 0.606175 | 1.4:-70486233 | MS.gene07196:CDS |
| CCAAGAAGATAGCAATAATG+GGG | 0.612634 | 1.4:-70486528 | MS.gene07196:CDS |
| CTTACATTGAGTGAAATGAA+GGG | 0.613061 | 1.4:+70487122 | None:intergenic |
| TTGTCGGAGTCCAAATACTT+GGG | 0.617317 | 1.4:-70486346 | MS.gene07196:CDS |
| GCACGGAAGCCCCTACTCAA+CGG | 0.627204 | 1.4:-70487237 | MS.gene07196:CDS |
| ACAATGAGTATGCTGATAAG+GGG | 0.629847 | 1.4:-70486573 | MS.gene07196:CDS |
| ATGGCATCAATAAAAGTGCA+CGG | 0.642318 | 1.4:-70487254 | MS.gene07196:CDS |
| CAGAGTTGCAGTAACCCGCA+TGG | 0.653094 | 1.4:+70487211 | None:intergenic |
| CCTACTCAACGGCCACCATG+CGG | 0.660998 | 1.4:-70487226 | MS.gene07196:CDS |
| TCGGAGTCCAAATACTTGGG+AGG | 0.675284 | 1.4:-70486343 | MS.gene07196:CDS |
| CAAGAAGATAGCAATAATGG+GGG | 0.701769 | 1.4:-70486527 | MS.gene07196:CDS |
| TAAATGATGCAAATCCACCA+AGG | 0.702241 | 1.4:+70486309 | None:intergenic |
| AGTTGCAGTAACCCGCATGG+TGG | 0.707787 | 1.4:+70487214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTCTACCAATATT+TGG | - | chr1.4:70486615-70486634 | MS.gene07196:intron | 20.0% |
| !!! | TTTTCTTTTCATTTTTTGCA+AGG | + | chr1.4:70486590-70486609 | None:intergenic | 20.0% |
| ! | AAAATTGAAATGCAGAATCA+AGG | - | chr1.4:70486816-70486835 | MS.gene07196:intron | 25.0% |
| ! | AAATTGAAATGCAGAATCAA+GGG | - | chr1.4:70486817-70486836 | MS.gene07196:intron | 25.0% |
| ! | TTATGTCAAACACCAAATAT+TGG | + | chr1.4:70486630-70486649 | None:intergenic | 25.0% |
| ! | TTCATCAAGTAATGAAAAGT+AGG | + | chr1.4:70487148-70487167 | None:intergenic | 25.0% |
| !! | GTTAACATTAACTTGAAGAA+TGG | - | chr1.4:70486270-70486289 | MS.gene07196:CDS | 25.0% |
| !! | TCATTCTCTTCAACAATTTT+TGG | + | chr1.4:70487025-70487044 | None:intergenic | 25.0% |
| AACAATGAGTATGCTGATAA+GGG | - | chr1.4:70486857-70486876 | MS.gene07196:intron | 30.0% | |
| ATTATACAGTTTGATCAACG+TGG | + | chr1.4:70486419-70486438 | None:intergenic | 30.0% | |
| CTTACATTGAGTGAAATGAA+GGG | + | chr1.4:70486312-70486331 | None:intergenic | 30.0% | |
| GACATAATATACAACACATG+TGG | - | chr1.4:70486643-70486662 | MS.gene07196:intron | 30.0% | |
| TAACAATGAGTATGCTGATA+AGG | - | chr1.4:70486856-70486875 | MS.gene07196:intron | 30.0% | |
| TCCAAGAAGATAGCAATAAT+GGG | - | chr1.4:70486902-70486921 | MS.gene07196:intron | 30.0% | |
| TCGTGATTCAAACAATTTCT+TGG | + | chr1.4:70487179-70487198 | None:intergenic | 30.0% | |
| TGTGTATGAGAAAAGATTGT+CGG | - | chr1.4:70487069-70487088 | MS.gene07196:intron | 30.0% | |
| TTGGGGATAAAGAGTTTATT+TGG | - | chr1.4:70486986-70487005 | MS.gene07196:intron | 30.0% | |
| ! | AAGTAGCATCAAAACTTGTT+CGG | - | chr1.4:70486960-70486979 | MS.gene07196:CDS | 30.0% |
| ! | GAGTTTATTTGGAATTCCTT+TGG | - | chr1.4:70486997-70487016 | MS.gene07196:intron | 30.0% |
| ! | TTTTTGCAAGGAGTGAAATT+AGG | + | chr1.4:70486578-70486597 | None:intergenic | 30.0% |
| !! | TCAACAATTTTTGGATCCAA+AGG | + | chr1.4:70487016-70487035 | None:intergenic | 30.0% |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1.4:70486475-70486494 | None:intergenic | 35.0% | |
| ACAATGAGTATGCTGATAAG+GGG | - | chr1.4:70486858-70486877 | MS.gene07196:intron | 35.0% | |
| ATCAAGAATGCTATCCAACT+TGG | + | chr1.4:70487050-70487069 | None:intergenic | 35.0% | |
| CAAGAAGATAGCAATAATGG+GGG | - | chr1.4:70486904-70486923 | MS.gene07196:intron | 35.0% | |
| CCAAGAAGATAGCAATAATG+GGG | - | chr1.4:70486903-70486922 | MS.gene07196:intron | 35.0% | |
| CTCCAAGAAGATAGCAATAA+TGG | - | chr1.4:70486901-70486920 | MS.gene07196:intron | 35.0% | |
| GAAGAATGGAGAACACAAAA+AGG | - | chr1.4:70486284-70486303 | MS.gene07196:CDS | 35.0% | |
| GCTTACATTGAGTGAAATGA+AGG | + | chr1.4:70486313-70486332 | None:intergenic | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1.4:70487125-70487144 | None:intergenic | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | - | chr1.4:70486442-70486461 | MS.gene07196:CDS | 35.0% | |
| ! | AGTAGCATCAAAACTTGTTC+GGG | - | chr1.4:70486961-70486980 | MS.gene07196:CDS | 35.0% |
| ! | ATCAAAACTTGTTCGGGAAT+TGG | - | chr1.4:70486967-70486986 | MS.gene07196:CDS | 35.0% |
| ! | ATGGCATCAATAAAAGTGCA+CGG | - | chr1.4:70486177-70486196 | MS.gene07196:CDS | 35.0% |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1.4:70486484-70486503 | MS.gene07196:CDS | 35.0% |
| ! | TCAAAACTTGTTCGGGAATT+GGG | - | chr1.4:70486968-70486987 | MS.gene07196:CDS | 35.0% |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1.4:70486460-70486479 | None:intergenic | 40.0% | |
| ACGATCTCATGTTAGTGCTT+GGG | - | chr1.4:70487195-70487214 | MS.gene07196:CDS | 40.0% | |
| ATTGTCGGAGTCCAAATACT+TGG | - | chr1.4:70487084-70487103 | MS.gene07196:intron | 40.0% | |
| CCCCATTATTGCTATCTTCT+TGG | + | chr1.4:70486906-70486925 | None:intergenic | 40.0% | |
| TACAGTTTGATCAACGTGGT+TGG | + | chr1.4:70486415-70486434 | None:intergenic | 40.0% | |
| TGAAGAGAATGAAGCCAAGT+TGG | - | chr1.4:70487033-70487052 | MS.gene07196:intron | 40.0% | |
| TGTCATGTGCTACGTAAATC+AGG | + | chr1.4:70486525-70486544 | None:intergenic | 40.0% | |
| TTGTCGGAGTCCAAATACTT+GGG | - | chr1.4:70487085-70487104 | MS.gene07196:intron | 40.0% | |
| ! | AGATAGCAATAATGGGGGTA+TGG | - | chr1.4:70486909-70486928 | MS.gene07196:intron | 40.0% |
| ! | ATGCTACTTGATCGAAGTGT+TGG | + | chr1.4:70486949-70486968 | None:intergenic | 40.0% |
| ! | CAAAACTTGTTCGGGAATTG+GGG | - | chr1.4:70486969-70486988 | MS.gene07196:CDS | 40.0% |
| ! | GGAGTCATTGCTTGTTAACT+TGG | + | chr1.4:70486885-70486904 | None:intergenic | 40.0% |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1.4:70486466-70486485 | MS.gene07196:CDS | 40.0% |
| AGAGTCACCTCCCAAGTATT+TGG | + | chr1.4:70487098-70487117 | None:intergenic | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1.4:70487224-70487243 | MS.gene07196:CDS | 45.0% | |
| ATCTCATGTTAGTGCTTGGG+TGG | - | chr1.4:70487198-70487217 | MS.gene07196:CDS | 45.0% | |
| CACGATCTCATGTTAGTGCT+TGG | - | chr1.4:70487194-70487213 | MS.gene07196:CDS | 45.0% | |
| TCAACGTGGTTGGAACAAGA+AGG | + | chr1.4:70486405-70486424 | None:intergenic | 45.0% | |
| AGGTGACTCTTTCACCTTGG+TGG | - | chr1.4:70487108-70487127 | MS.gene07196:intron | 50.0% | |
| GCAAGGACTTTAGACCAAGC+TGG | + | chr1.4:70487241-70487260 | None:intergenic | 50.0% | |
| TCGGAGTCCAAATACTTGGG+AGG | - | chr1.4:70487088-70487107 | MS.gene07196:intron | 50.0% | |
| ! | AATGGGGGTATGGTCTGAAG+TGG | - | chr1.4:70486919-70486938 | MS.gene07196:intron | 50.0% |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1.4:70486220-70486239 | None:intergenic | 55.0% | |
| CAGAGTTGCAGTAACCCGCA+TGG | + | chr1.4:70486223-70486242 | None:intergenic | 55.0% | |
| GGGAGGTGACTCTTTCACCT+TGG | - | chr1.4:70487105-70487124 | MS.gene07196:intron | 55.0% | |
| CCTACTCAACGGCCACCATG+CGG | - | chr1.4:70486205-70486224 | MS.gene07196:CDS | 60.0% | |
| CGCATGGTGGCCGTTGAGTA+GGG | + | chr1.4:70486207-70486226 | None:intergenic | 60.0% | |
| CTACTCAACGGCCACCATGC+GGG | - | chr1.4:70486206-70486225 | MS.gene07196:CDS | 60.0% | |
| GCACGGAAGCCCCTACTCAA+CGG | - | chr1.4:70486194-70486213 | MS.gene07196:CDS | 60.0% | |
| GCATGGTGGCCGTTGAGTAG+GGG | + | chr1.4:70486206-70486225 | None:intergenic | 60.0% | |
| CCGCATGGTGGCCGTTGAGT+AGG | + | chr1.4:70486208-70486227 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70486177 | 70487276 | 70486177 | ID=MS.gene07196 |
| chr1.4 | mRNA | 70486177 | 70487276 | 70486177 | ID=MS.gene07196.t1;Parent=MS.gene07196 |
| chr1.4 | exon | 70487127 | 70487276 | 70487127 | ID=MS.gene07196.t1.exon1;Parent=MS.gene07196.t1 |
| chr1.4 | CDS | 70487127 | 70487276 | 70487127 | ID=cds.MS.gene07196.t1;Parent=MS.gene07196.t1 |
| chr1.4 | exon | 70486948 | 70486996 | 70486948 | ID=MS.gene07196.t1.exon2;Parent=MS.gene07196.t1 |
| chr1.4 | CDS | 70486948 | 70486996 | 70486948 | ID=cds.MS.gene07196.t1;Parent=MS.gene07196.t1 |
| chr1.4 | exon | 70486177 | 70486622 | 70486177 | ID=MS.gene07196.t1.exon3;Parent=MS.gene07196.t1 |
| chr1.4 | CDS | 70486177 | 70486622 | 70486177 | ID=cds.MS.gene07196.t1;Parent=MS.gene07196.t1 |
| Gene Sequence |
| Protein sequence |
