Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03036.t1 | XP_013469188.1 | 92.5 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 9.30E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03036.t1 | P46423 | 66.0 | 206 | 70 | 0 | 4 | 209 | 3 | 208 | 4.9e-74 | 278.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03036.t1 | A0A072VNK7 | 92.5 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 6.7e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005621 | MS.gene03036 | PPI |
| MS.gene07192 | MS.gene03036 | PPI |
| MS.gene20712 | MS.gene03036 | PPI |
| MS.gene005619 | MS.gene03036 | PPI |
| MS.gene20713 | MS.gene03036 | PPI |
| MS.gene03035 | MS.gene03036 | PPI |
| MS.gene20711 | MS.gene03036 | PPI |
| MS.gene07195 | MS.gene03036 | PPI |
| MS.gene07174 | MS.gene03036 | PPI |
| MS.gene07196 | MS.gene03036 | PPI |
| MS.gene03036 | MS.gene07192 | PPI |
| MS.gene03034 | MS.gene03036 | PPI |
| MS.gene005620 | MS.gene03036 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03036.t1 | MTR_1g088840 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.65e-149 | 414 |
| MS.gene03036.t1 | MTR_1g088825 | 92.523 | 214 | 16 | 0 | 1 | 214 | 1 | 214 | 1.65e-149 | 414 |
| MS.gene03036.t1 | MTR_1g088845 | 86.916 | 214 | 28 | 0 | 1 | 214 | 1 | 214 | 1.55e-139 | 389 |
| MS.gene03036.t1 | MTR_1g088840 | 91.566 | 166 | 14 | 0 | 49 | 214 | 2 | 167 | 3.83e-112 | 318 |
| MS.gene03036.t1 | MTR_1g088840 | 92.373 | 118 | 9 | 0 | 97 | 214 | 1 | 118 | 3.62e-77 | 228 |
| MS.gene03036.t1 | MTR_3g064700 | 46.117 | 206 | 110 | 1 | 4 | 208 | 3 | 208 | 3.00e-60 | 188 |
| MS.gene03036.t1 | MTR_3g450930 | 44.498 | 209 | 114 | 2 | 4 | 211 | 3 | 210 | 4.70e-59 | 185 |
| MS.gene03036.t1 | MTR_3g450790 | 44.019 | 209 | 115 | 2 | 4 | 211 | 3 | 210 | 3.63e-58 | 182 |
| MS.gene03036.t1 | MTR_1g088850 | 39.713 | 209 | 125 | 1 | 3 | 210 | 2 | 210 | 1.57e-56 | 179 |
| MS.gene03036.t1 | MTR_5g090920 | 44.019 | 209 | 112 | 4 | 4 | 209 | 3 | 209 | 8.61e-56 | 177 |
| MS.gene03036.t1 | MTR_1g026140 | 42.130 | 216 | 119 | 3 | 4 | 213 | 5 | 220 | 2.46e-55 | 176 |
| MS.gene03036.t1 | MTR_5g090910 | 41.905 | 210 | 119 | 3 | 4 | 211 | 3 | 211 | 1.30e-54 | 174 |
| MS.gene03036.t1 | MTR_1g492670 | 86.765 | 68 | 9 | 0 | 147 | 214 | 2 | 69 | 6.11e-39 | 129 |
| MS.gene03036.t1 | MTR_5g090910 | 40.136 | 147 | 86 | 2 | 67 | 211 | 8 | 154 | 3.59e-32 | 114 |
| MS.gene03036.t1 | MTR_3g088635 | 23.013 | 239 | 152 | 5 | 4 | 210 | 1 | 239 | 2.96e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03036.t1 | AT1G02920 | 63.158 | 209 | 77 | 0 | 1 | 209 | 1 | 209 | 5.04e-89 | 261 |
| MS.gene03036.t1 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.37e-88 | 258 |
| MS.gene03036.t1 | AT1G02930 | 61.722 | 209 | 79 | 1 | 1 | 209 | 1 | 208 | 6.37e-88 | 258 |
| MS.gene03036.t1 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.82e-86 | 256 |
| MS.gene03036.t1 | AT2G47730 | 58.049 | 205 | 85 | 1 | 6 | 209 | 54 | 258 | 3.82e-86 | 256 |
| MS.gene03036.t1 | AT4G02520 | 59.242 | 211 | 83 | 1 | 1 | 208 | 1 | 211 | 6.27e-85 | 251 |
| MS.gene03036.t1 | AT2G02930 | 58.962 | 212 | 84 | 1 | 1 | 209 | 1 | 212 | 3.66e-83 | 246 |
| MS.gene03036.t1 | AT1G02950 | 54.369 | 206 | 93 | 1 | 1 | 205 | 24 | 229 | 5.48e-78 | 234 |
| MS.gene03036.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.61e-77 | 232 |
| MS.gene03036.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 26 | 227 | 2.61e-77 | 232 |
| MS.gene03036.t1 | AT1G02950 | 54.950 | 202 | 90 | 1 | 5 | 205 | 38 | 239 | 2.86e-77 | 233 |
| MS.gene03036.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.56e-66 | 205 |
| MS.gene03036.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 40 | 245 | 2.56e-66 | 205 |
| MS.gene03036.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 65 | 270 | 3.54e-66 | 205 |
| MS.gene03036.t1 | AT1G02940 | 47.087 | 206 | 108 | 1 | 5 | 209 | 53 | 258 | 4.34e-66 | 205 |
| MS.gene03036.t1 | AT3G62760 | 47.826 | 207 | 107 | 1 | 3 | 208 | 2 | 208 | 2.80e-63 | 196 |
| MS.gene03036.t1 | AT1G49860 | 47.692 | 195 | 98 | 2 | 21 | 211 | 22 | 216 | 7.64e-58 | 183 |
| MS.gene03036.t1 | AT3G03190 | 44.498 | 209 | 115 | 1 | 4 | 211 | 3 | 211 | 5.66e-57 | 180 |
| MS.gene03036.t1 | AT5G17220 | 39.234 | 209 | 126 | 1 | 4 | 211 | 3 | 211 | 6.49e-52 | 167 |
| MS.gene03036.t1 | AT2G30860 | 40.385 | 208 | 122 | 2 | 4 | 210 | 3 | 209 | 5.72e-50 | 162 |
| MS.gene03036.t1 | AT2G30870 | 38.424 | 203 | 124 | 1 | 9 | 210 | 7 | 209 | 2.74e-46 | 152 |
| MS.gene03036.t1 | AT1G02950 | 50.704 | 142 | 69 | 1 | 65 | 205 | 60 | 201 | 4.50e-44 | 147 |
| MS.gene03036.t1 | AT2G30860 | 37.500 | 152 | 94 | 1 | 4 | 155 | 3 | 153 | 5.86e-31 | 112 |
| MS.gene03036.t1 | AT5G41210 | 25.980 | 204 | 145 | 2 | 1 | 198 | 1 | 204 | 1.45e-11 | 62.4 |
| MS.gene03036.t1 | AT5G41240 | 29.208 | 202 | 131 | 5 | 4 | 196 | 3 | 201 | 3.80e-11 | 62.4 |
Find 54 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCATTATTGCTATCTTCT+TGG | 0.169803 | 1.3:+62154493 | None:intergenic |
| TTGGGGATAAAGAGTTTATT+TGG | 0.186179 | 1.3:-62154410 | MS.gene03036:CDS |
| ATCAAGAATGCTATCCAATT+TGG | 0.237155 | 1.3:+62154349 | None:intergenic |
| AGAGTCACCTCCCAAGTATT+TGG | 0.266829 | 1.3:+62154301 | None:intergenic |
| CTCCAAGAAGATAGCAATAA+TGG | 0.269830 | 1.3:-62154495 | MS.gene03036:CDS |
| TCAAAACTTGTTCGGGAATT+GGG | 0.278093 | 1.3:-62154428 | MS.gene03036:CDS |
| ATCAAAACTTGTTCGGGAAT+TGG | 0.285433 | 1.3:-62154429 | MS.gene03036:CDS |
| GATGGAGATTTAAAGCTCTT+TGG | 0.296201 | 1.3:-62154859 | MS.gene03036:intron |
| TGAAGAGAATGAAGCCAAAT+TGG | 0.299438 | 1.3:-62154363 | MS.gene03036:CDS |
| TCGTGATTCAAACAATTTCT+TGG | 0.300130 | 1.3:+62154220 | None:intergenic |
| GAAGAATGGAGAACACAAAA+AGG | 0.349354 | 1.3:-62155089 | MS.gene03036:CDS |
| GGAGTCATTGCTTGTTAACT+TGG | 0.352335 | 1.3:+62154514 | None:intergenic |
| CGCATGGTGGCCGTTGAGTA+GGG | 0.361457 | 1.3:+62155169 | None:intergenic |
| AACAATGAGTATGCTGATAA+GGG | 0.368137 | 1.3:-62154539 | MS.gene03036:CDS |
| TTCTTTATGTTGCAGCCATT+TGG | 0.379956 | 1.3:-62154901 | MS.gene03036:intron |
| TAACAATGAGTATGCTGATA+AGG | 0.387390 | 1.3:-62154540 | MS.gene03036:CDS |
| AGTAGCATCAAAACTTGTTC+GGG | 0.393847 | 1.3:-62154435 | MS.gene03036:CDS |
| AAGTAGCATCAAAACTTGTT+CGG | 0.398448 | 1.3:-62154436 | MS.gene03036:CDS |
| GAGTTTATTTGGAATTCCTT+TGG | 0.399412 | 1.3:-62154399 | MS.gene03036:CDS |
| CCGCATGGTGGCCGTTGAGT+AGG | 0.403862 | 1.3:+62155168 | None:intergenic |
| TCCAAGAAGATAGCAATAAT+GGG | 0.404293 | 1.3:-62154494 | MS.gene03036:CDS |
| GTTAACATTAACTTGAAGAA+TGG | 0.418899 | 1.3:-62155103 | MS.gene03036:CDS |
| AGGTGACTCTTTCACCTTGG+TGG | 0.445525 | 1.3:-62154288 | MS.gene03036:CDS |
| AAATCTCCATCTTCAAAAGC+TGG | 0.446504 | 1.3:+62154871 | None:intergenic |
| ACTGTCTTAATTAGGTATCA+TGG | 0.449391 | 1.3:+62154136 | None:intergenic |
| GCTTACATTGAGTGATATGA+AGG | 0.454820 | 1.3:+62155063 | None:intergenic |
| CACGATCTCATGTTAGTGCT+TGG | 0.456189 | 1.3:-62154202 | MS.gene03036:CDS |
| AAAATTGAAATGCAGAATCA+AGG | 0.457301 | 1.3:-62154580 | MS.gene03036:intron |
| ATTGTCTGAGTCCAAATACT+TGG | 0.458455 | 1.3:-62154312 | MS.gene03036:CDS |
| AAAGCTGGAACTTGACCAAA+TGG | 0.480424 | 1.3:+62154886 | None:intergenic |
| ACGATCTCATGTTAGTGCTT+GGG | 0.482947 | 1.3:-62154201 | MS.gene03036:CDS |
| ATGCTACTTGATCGAAGTGT+TGG | 0.510802 | 1.3:+62154450 | None:intergenic |
| GGGAGGTGACTCTTTCACCT+TGG | 0.520363 | 1.3:-62154291 | MS.gene03036:CDS |
| TTCATCAAGTAATGAAAAGT+AGG | 0.527654 | 1.3:+62154251 | None:intergenic |
| CTACTCAACGGCCACCATGC+GGG | 0.529590 | 1.3:-62155167 | MS.gene03036:CDS |
| CAAAACTTGTTCGGGAATTG+GGG | 0.535983 | 1.3:-62154427 | MS.gene03036:CDS |
| CTTAATTAGGTATCATGGCA+AGG | 0.566951 | 1.3:+62154141 | None:intergenic |
| AAATTGAAATGCAGAATCAA+GGG | 0.575285 | 1.3:-62154579 | MS.gene03036:intron |
| GCAAGGACTTTAGACCAAGC+TGG | 0.580505 | 1.3:+62154158 | None:intergenic |
| GCATGGTGGCCGTTGAGTAG+GGG | 0.589594 | 1.3:+62155170 | None:intergenic |
| ATATCACTGCAAGACCAGCT+TGG | 0.601324 | 1.3:-62154172 | MS.gene03036:CDS |
| TTGTCTGAGTCCAAATACTT+GGG | 0.601763 | 1.3:-62154311 | MS.gene03036:CDS |
| ATCTCATGTTAGTGCTTGGG+TGG | 0.606175 | 1.3:-62154198 | MS.gene03036:CDS |
| CCAAGAAGATAGCAATAATG+GGG | 0.612634 | 1.3:-62154493 | MS.gene03036:CDS |
| CTTACATTGAGTGATATGAA+GGG | 0.613061 | 1.3:+62155064 | None:intergenic |
| GCACGGAAGCCCCTACTCAA+CGG | 0.627204 | 1.3:-62155179 | MS.gene03036:CDS |
| ACAATGAGTATGCTGATAAG+GGG | 0.629847 | 1.3:-62154538 | MS.gene03036:CDS |
| ATGGCATCAATAAAAGTGCA+CGG | 0.642318 | 1.3:-62155196 | MS.gene03036:CDS |
| GAGAGTTGCAGTAACCCGCA+TGG | 0.650972 | 1.3:+62155153 | None:intergenic |
| CCTACTCAACGGCCACCATG+CGG | 0.660998 | 1.3:-62155168 | MS.gene03036:CDS |
| TCTGAGTCCAAATACTTGGG+AGG | 0.681272 | 1.3:-62154308 | MS.gene03036:CDS |
| AGTTGCAGTAACCCGCATGG+TGG | 0.691159 | 1.3:+62155156 | None:intergenic |
| CAAGAAGATAGCAATAATGG+GGG | 0.701769 | 1.3:-62154492 | MS.gene03036:CDS |
| TAAATGATGCAAATCCACCA+AGG | 0.702241 | 1.3:+62154274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACATTGATAATTTAACAT+TGG | + | chr1.3:62154629-62154648 | None:intergenic | 15.0% |
| ! | AAAATTGAAATGCAGAATCA+AGG | - | chr1.3:62154758-62154777 | MS.gene03036:intron | 25.0% |
| ! | AAATTGAAATGCAGAATCAA+GGG | - | chr1.3:62154759-62154778 | MS.gene03036:intron | 25.0% |
| ! | TTCATCAAGTAATGAAAAGT+AGG | + | chr1.3:62155090-62155109 | None:intergenic | 25.0% |
| !! | ATCAATTAGTTTGATCAATG+TGG | + | chr1.3:62154414-62154433 | None:intergenic | 25.0% |
| !! | GTTAACATTAACTTGAAGAA+TGG | - | chr1.3:62154235-62154254 | MS.gene03036:CDS | 25.0% |
| !! | TCATTCTCTTCAACAATTTT+TGG | + | chr1.3:62154967-62154986 | None:intergenic | 25.0% |
| AACAATGAGTATGCTGATAA+GGG | - | chr1.3:62154799-62154818 | MS.gene03036:intron | 30.0% | |
| ATCAAGAATGCTATCCAATT+TGG | + | chr1.3:62154992-62155011 | None:intergenic | 30.0% | |
| CTTACATTGAGTGATATGAA+GGG | + | chr1.3:62154277-62154296 | None:intergenic | 30.0% | |
| TAACAATGAGTATGCTGATA+AGG | - | chr1.3:62154798-62154817 | MS.gene03036:intron | 30.0% | |
| TCCAAGAAGATAGCAATAAT+GGG | - | chr1.3:62154844-62154863 | MS.gene03036:intron | 30.0% | |
| TCGTGATTCAAACAATTTCT+TGG | + | chr1.3:62155121-62155140 | None:intergenic | 30.0% | |
| TTGGGGATAAAGAGTTTATT+TGG | - | chr1.3:62154928-62154947 | MS.gene03036:intron | 30.0% | |
| ! | AAGTAGCATCAAAACTTGTT+CGG | - | chr1.3:62154902-62154921 | MS.gene03036:intron | 30.0% |
| ! | ATTAGTTTGATCAATGTGGT+TGG | + | chr1.3:62154410-62154429 | None:intergenic | 30.0% |
| ! | GAGTTTATTTGGAATTCCTT+TGG | - | chr1.3:62154939-62154958 | MS.gene03036:intron | 30.0% |
| !! | TCAACAATTTTTGGATCCAA+AGG | + | chr1.3:62154958-62154977 | None:intergenic | 30.0% |
| !!! | GTTTCTTTTCATTTTTTGCG+AGG | + | chr1.3:62154585-62154604 | None:intergenic | 30.0% |
| AAATCTCCATCTTCAAAAGC+TGG | + | chr1.3:62154470-62154489 | None:intergenic | 35.0% | |
| ACAATGAGTATGCTGATAAG+GGG | - | chr1.3:62154800-62154819 | MS.gene03036:intron | 35.0% | |
| ATTGTCTGAGTCCAAATACT+TGG | - | chr1.3:62155026-62155045 | MS.gene03036:intron | 35.0% | |
| CAAGAAGATAGCAATAATGG+GGG | - | chr1.3:62154846-62154865 | MS.gene03036:intron | 35.0% | |
| CCAAGAAGATAGCAATAATG+GGG | - | chr1.3:62154845-62154864 | MS.gene03036:intron | 35.0% | |
| CTCCAAGAAGATAGCAATAA+TGG | - | chr1.3:62154843-62154862 | MS.gene03036:intron | 35.0% | |
| GAAGAATGGAGAACACAAAA+AGG | - | chr1.3:62154249-62154268 | MS.gene03036:CDS | 35.0% | |
| GCTTACATTGAGTGATATGA+AGG | + | chr1.3:62154278-62154297 | None:intergenic | 35.0% | |
| TAAATGATGCAAATCCACCA+AGG | + | chr1.3:62155067-62155086 | None:intergenic | 35.0% | |
| TGAAGAGAATGAAGCCAAAT+TGG | - | chr1.3:62154975-62154994 | MS.gene03036:intron | 35.0% | |
| TTCTTTATGTTGCAGCCATT+TGG | - | chr1.3:62154437-62154456 | MS.gene03036:CDS | 35.0% | |
| TTGTCTGAGTCCAAATACTT+GGG | - | chr1.3:62155027-62155046 | MS.gene03036:intron | 35.0% | |
| ! | AGTAGCATCAAAACTTGTTC+GGG | - | chr1.3:62154903-62154922 | MS.gene03036:intron | 35.0% |
| ! | ATCAAAACTTGTTCGGGAAT+TGG | - | chr1.3:62154909-62154928 | MS.gene03036:intron | 35.0% |
| ! | ATGGCATCAATAAAAGTGCA+CGG | - | chr1.3:62154142-62154161 | MS.gene03036:CDS | 35.0% |
| ! | GATGGAGATTTAAAGCTCTT+TGG | - | chr1.3:62154479-62154498 | MS.gene03036:CDS | 35.0% |
| ! | TCAAAACTTGTTCGGGAATT+GGG | - | chr1.3:62154910-62154929 | MS.gene03036:intron | 35.0% |
| ! | TTTTTGCGAGGAGTGAAATT+AGG | + | chr1.3:62154573-62154592 | None:intergenic | 35.0% |
| AAAGCTGGAACTTGACCAAA+TGG | + | chr1.3:62154455-62154474 | None:intergenic | 40.0% | |
| ACGATCTCATGTTAGTGCTT+GGG | - | chr1.3:62155137-62155156 | MS.gene03036:CDS | 40.0% | |
| CCCCATTATTGCTATCTTCT+TGG | + | chr1.3:62154848-62154867 | None:intergenic | 40.0% | |
| TCAATGTGGTTGGAACAAGA+AGG | + | chr1.3:62154400-62154419 | None:intergenic | 40.0% | |
| TGTCATGTGCTACGTAAATC+AGG | + | chr1.3:62154520-62154539 | None:intergenic | 40.0% | |
| ! | AGATAGCAATAATGGGGGTA+TGG | - | chr1.3:62154851-62154870 | MS.gene03036:intron | 40.0% |
| ! | ATGCTACTTGATCGAAGTGT+TGG | + | chr1.3:62154891-62154910 | None:intergenic | 40.0% |
| ! | CAAAACTTGTTCGGGAATTG+GGG | - | chr1.3:62154911-62154930 | MS.gene03036:intron | 40.0% |
| ! | GGAGTCATTGCTTGTTAACT+TGG | + | chr1.3:62154827-62154846 | None:intergenic | 40.0% |
| !! | CAAGTTCCAGCTTTTGAAGA+TGG | - | chr1.3:62154461-62154480 | MS.gene03036:CDS | 40.0% |
| AGAGTCACCTCCCAAGTATT+TGG | + | chr1.3:62155040-62155059 | None:intergenic | 45.0% | |
| ATATCACTGCAAGACCAGCT+TGG | - | chr1.3:62155166-62155185 | MS.gene03036:CDS | 45.0% | |
| ATCTCATGTTAGTGCTTGGG+TGG | - | chr1.3:62155140-62155159 | MS.gene03036:CDS | 45.0% | |
| CACGATCTCATGTTAGTGCT+TGG | - | chr1.3:62155136-62155155 | MS.gene03036:CDS | 45.0% | |
| CTAATATTTGTGCGAGCGCT+TGG | - | chr1.3:62154706-62154725 | MS.gene03036:intron | 45.0% | |
| TCTGAGTCCAAATACTTGGG+AGG | - | chr1.3:62155030-62155049 | MS.gene03036:intron | 45.0% | |
| AGGTGACTCTTTCACCTTGG+TGG | - | chr1.3:62155050-62155069 | MS.gene03036:intron | 50.0% | |
| GCAAGGACTTTAGACCAAGC+TGG | + | chr1.3:62155183-62155202 | None:intergenic | 50.0% | |
| ! | AATGGGGGTATGGTCTGAAG+TGG | - | chr1.3:62154861-62154880 | MS.gene03036:CDS | 50.0% |
| AGTTGCAGTAACCCGCATGG+TGG | + | chr1.3:62154185-62154204 | None:intergenic | 55.0% | |
| GAGAGTTGCAGTAACCCGCA+TGG | + | chr1.3:62154188-62154207 | None:intergenic | 55.0% | |
| GGGAGGTGACTCTTTCACCT+TGG | - | chr1.3:62155047-62155066 | MS.gene03036:intron | 55.0% | |
| CCTACTCAACGGCCACCATG+CGG | - | chr1.3:62154170-62154189 | MS.gene03036:CDS | 60.0% | |
| CGCATGGTGGCCGTTGAGTA+GGG | + | chr1.3:62154172-62154191 | None:intergenic | 60.0% | |
| CTACTCAACGGCCACCATGC+GGG | - | chr1.3:62154171-62154190 | MS.gene03036:CDS | 60.0% | |
| GCACGGAAGCCCCTACTCAA+CGG | - | chr1.3:62154159-62154178 | MS.gene03036:CDS | 60.0% | |
| GCATGGTGGCCGTTGAGTAG+GGG | + | chr1.3:62154171-62154190 | None:intergenic | 60.0% | |
| CCGCATGGTGGCCGTTGAGT+AGG | + | chr1.3:62154173-62154192 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 62154142 | 62155218 | 62154142 | ID=MS.gene03036 |
| chr1.3 | mRNA | 62154142 | 62155218 | 62154142 | ID=MS.gene03036.t1;Parent=MS.gene03036 |
| chr1.3 | exon | 62155069 | 62155218 | 62155069 | ID=MS.gene03036.t1.exon1;Parent=MS.gene03036.t1 |
| chr1.3 | CDS | 62155069 | 62155218 | 62155069 | ID=cds.MS.gene03036.t1;Parent=MS.gene03036.t1 |
| chr1.3 | exon | 62154860 | 62154908 | 62154860 | ID=MS.gene03036.t1.exon2;Parent=MS.gene03036.t1 |
| chr1.3 | CDS | 62154860 | 62154908 | 62154860 | ID=cds.MS.gene03036.t1;Parent=MS.gene03036.t1 |
| chr1.3 | exon | 62154142 | 62154587 | 62154142 | ID=MS.gene03036.t1.exon3;Parent=MS.gene03036.t1 |
| chr1.3 | CDS | 62154142 | 62154587 | 62154142 | ID=cds.MS.gene03036.t1;Parent=MS.gene03036.t1 |
| Gene Sequence |
| Protein sequence |
