Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031439.t1 | XP_003596745.1 | 100 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 1.10E-61 | 245.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031439.t1 | P49200 | 87.1 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.2e-53 | 210.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031439.t1 | G7IRA1 | 100.0 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 7.8e-62 | 245.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene031439 | MS.gene059832 | PPI |
MS.gene017955 | MS.gene031439 | PPI |
MS.gene031439 | MS.gene77739 | PPI |
MS.gene031439 | MS.gene78060 | PPI |
MS.gene72479 | MS.gene031439 | PPI |
MS.gene031439 | MS.gene04591 | PPI |
MS.gene031439 | MS.gene072375 | PPI |
MS.gene068750 | MS.gene031439 | PPI |
MS.gene045681 | MS.gene031439 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031439.t1 | MTR_2g085090 | 100.000 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 3.49e-88 | 251 |
MS.gene031439.t1 | MTR_1g091057 | 100.000 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 3.49e-88 | 251 |
MS.gene031439.t1 | MTR_0157s0070 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 6.25e-84 | 241 |
MS.gene031439.t1 | MTR_4g034030 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 6.25e-84 | 241 |
MS.gene031439.t1 | MTR_7g092720 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 9.91e-84 | 240 |
MS.gene031439.t1 | MTR_4g034030 | 98.824 | 85 | 1 | 0 | 39 | 123 | 3 | 87 | 2.50e-58 | 175 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031439.t1 | AT5G62300 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
MS.gene031439.t1 | AT5G62300 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
MS.gene031439.t1 | AT3G45030 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
Find 45 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCACCCTTCTCGAGATTT+TGG | 0.146140 | 2.1:-20873901 | None:intergenic |
GTGCTAAGGACAAGCATCTT+AGG | 0.246369 | 2.1:+20874043 | MS.gene031439:CDS |
GGTAGGTTTGGAGGAGTCTC+AGG | 0.385792 | 2.1:+20873835 | MS.gene031439:CDS |
TCCTCCAAACCTACCTTTGT+TGG | 0.397160 | 2.1:-20873827 | None:intergenic |
AAAACCAACAAAGGTAGGTT+TGG | 0.397934 | 2.1:+20873823 | MS.gene031439:CDS |
GTAATCTGCTTAACAACGTC+TGG | 0.415218 | 2.1:-20875826 | None:intergenic |
GCTGTTAGTTTGTGCTGACT+TGG | 0.426562 | 2.1:+20874014 | MS.gene031439:intron |
TTGAACTCCGTGTGCACAAG+AGG | 0.436894 | 2.1:+20875782 | MS.gene031439:CDS |
AGGAGCAGATCCACAAGATT+AGG | 0.453895 | 2.1:+20873855 | MS.gene031439:CDS |
AGGTTCTTCACATTACTACT+AGG | 0.481361 | 2.1:+20874094 | MS.gene031439:CDS |
GTAATGTGAAGAACCTTAGT+AGG | 0.488319 | 2.1:-20874087 | None:intergenic |
TTGTTTCAGGTACCAACACT+TGG | 0.488993 | 2.1:+20875752 | MS.gene031439:intron |
ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 2.1:-20875848 | None:intergenic |
CGAACCTGGTGTCGAGGTTG+AGG | 0.496706 | 2.1:+20875861 | MS.gene031439:CDS |
CAACGTCTGGGGAACTGTAA+AGG | 0.512765 | 2.1:-20875813 | None:intergenic |
ACCTGTCAGGATGCCTACTA+AGG | 0.514666 | 2.1:+20874074 | MS.gene031439:CDS |
ACCTCTATCACCATCGAACC+TGG | 0.519945 | 2.1:+20875847 | MS.gene031439:CDS |
GTTTGTGCTGACTTGGTTCG+TGG | 0.525514 | 2.1:+20874021 | MS.gene031439:intron |
GCTATAAAACCAACAAAGGT+AGG | 0.526218 | 2.1:+20873818 | MS.gene031439:CDS |
ACCAACAAAGGTAGGTTTGG+AGG | 0.528672 | 2.1:+20873826 | MS.gene031439:CDS |
TGCTAAGGACAAGCATCTTA+GGG | 0.529942 | 2.1:+20874044 | MS.gene031439:CDS |
TTAGGGTCAAGGGACCTGTC+AGG | 0.530594 | 2.1:+20874061 | MS.gene031439:CDS |
AGGAAGACCCCTTGTGGTGA+AGG | 0.532764 | 2.1:+20874114 | MS.gene031439:CDS |
TAATCTGCTTAACAACGTCT+GGG | 0.545211 | 2.1:-20875825 | None:intergenic |
TGACTTGGTTCGTGGTGCTA+AGG | 0.550440 | 2.1:+20874029 | MS.gene031439:CDS |
AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 2.1:-20875857 | None:intergenic |
ACCTTAGTAGGCATCCTGAC+AGG | 0.553261 | 2.1:-20874075 | None:intergenic |
GTCACCTCAACCTCGACACC+AGG | 0.559183 | 2.1:-20875865 | None:intergenic |
CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 2.1:+20875855 | MS.gene031439:CDS |
GGACAAGCATCTTAGGGTCA+AGG | 0.562678 | 2.1:+20874050 | MS.gene031439:CDS |
CAATGACCCTCTTGTGCACA+CGG | 0.568374 | 2.1:-20875789 | None:intergenic |
AGAGAGTGATCCTAATCTTG+TGG | 0.570336 | 2.1:-20873865 | None:intergenic |
GACAAGCATCTTAGGGTCAA+GGG | 0.571703 | 2.1:+20874051 | MS.gene031439:CDS |
TTCAAATCTATCCCAAGTGT+TGG | 0.578144 | 2.1:-20875764 | None:intergenic |
TGTTTCAGGTACCAACACTT+GGG | 0.590556 | 2.1:+20875753 | MS.gene031439:intron |
GCACGTCCAAAATCTCGAGA+AGG | 0.598053 | 2.1:+20873895 | MS.gene031439:CDS |
CACGTCCAAAATCTCGAGAA+GGG | 0.604361 | 2.1:+20873896 | MS.gene031439:CDS |
TGTAATACCTTCACCACAAG+GGG | 0.605448 | 2.1:-20874121 | None:intergenic |
TGCTGCTATAAAACCAACAA+AGG | 0.618513 | 2.1:+20873814 | MS.gene031439:CDS |
TCAAGATCAAGCGTCTGCAA+TGG | 0.624541 | 2.1:-20875887 | None:intergenic |
AATGTAATACCTTCACCACA+AGG | 0.648603 | 2.1:-20874123 | None:intergenic |
ATGTAATACCTTCACCACAA+GGG | 0.650245 | 2.1:-20874122 | None:intergenic |
TGAACTCCGTGTGCACAAGA+GGG | 0.668892 | 2.1:+20875783 | MS.gene031439:CDS |
ACTACTAGGAAGACCCCTTG+TGG | 0.691181 | 2.1:+20874108 | MS.gene031439:CDS |
AATCTGCTTAACAACGTCTG+GGG | 0.738536 | 2.1:-20875824 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTTTATCTCATTTTTT+TGG | + | chr2.1:20875163-20875182 | MS.gene031439:intron | 10.0% |
!!! | ATTTTTTTTTTATTATTGTG+TGG | + | chr2.1:20874169-20874188 | MS.gene031439:intron | 10.0% |
!! | AAGATTATGAATTATATTCT+GGG | - | chr2.1:20875539-20875558 | None:intergenic | 15.0% |
!! | AGATAAAAAATTTAGACTAT+GGG | - | chr2.1:20875155-20875174 | None:intergenic | 15.0% |
!! | AAGAATTTAGTAGAGTTATT+TGG | + | chr2.1:20874449-20874468 | MS.gene031439:intron | 20.0% |
!! | AATAAAAGTTTCACGATAAT+TGG | - | chr2.1:20874820-20874839 | None:intergenic | 20.0% |
!! | AATGTAATGAAAGTAGTAAT+AGG | + | chr2.1:20874392-20874411 | MS.gene031439:intron | 20.0% |
!! | ATTTCAAAAATCATATCAGA+AGG | - | chr2.1:20875669-20875688 | None:intergenic | 20.0% |
!! | ATTTGGATTTAATGATCTAT+AGG | + | chr2.1:20874466-20874485 | MS.gene031439:intron | 20.0% |
!! | CAAGATTATGAATTATATTC+TGG | - | chr2.1:20875540-20875559 | None:intergenic | 20.0% |
!! | GAGATAAAAAATTTAGACTA+TGG | - | chr2.1:20875156-20875175 | None:intergenic | 20.0% |
!! | TTATGTAAGTTTATCCATAA+AGG | - | chr2.1:20874965-20874984 | None:intergenic | 20.0% |
!! | TTTGGATTTAATGATCTATA+GGG | + | chr2.1:20874467-20874486 | MS.gene031439:intron | 20.0% |
!!! | TTTATCTCATTTTTTTGGAA+AGG | + | chr2.1:20875168-20875187 | MS.gene031439:intron | 20.0% |
!!! | TTTTCTCAAAAATAGCAAAA+AGG | + | chr2.1:20874649-20874668 | MS.gene031439:intron | 20.0% |
! | AAAATTACATTTCCATGACT+TGG | - | chr2.1:20875588-20875607 | None:intergenic | 25.0% |
! | AAATGGTTTCAGAAAATTCA+TGG | + | chr2.1:20874331-20874350 | MS.gene031439:intron | 25.0% |
! | AATTCTTTCAATAACTCACT+AGG | - | chr2.1:20874436-20874455 | None:intergenic | 25.0% |
! | ATAAATAACTACACATAGCA+TGG | - | chr2.1:20875409-20875428 | None:intergenic | 25.0% |
! | ATGTGTAGTTATTTATCTCA+TGG | + | chr2.1:20875413-20875432 | MS.gene031439:intron | 25.0% |
! | GATTTAATGAAAGTAGTGAT+AGG | + | chr2.1:20874355-20874374 | MS.gene031439:intron | 25.0% |
! | TCACTAAATATGCTTATGTT+TGG | + | chr2.1:20873974-20873993 | MS.gene031439:intron | 25.0% |
! | TCATAAAAATGCATACAGAA+TGG | - | chr2.1:20874250-20874269 | None:intergenic | 25.0% |
!! | TATATTTCCTTTTCTTGTCA+TGG | + | chr2.1:20875472-20875491 | MS.gene031439:intron | 25.0% |
!! | TGATTGGTTAAAATTCACAT+GGG | + | chr2.1:20875224-20875243 | MS.gene031439:intron | 25.0% |
!! | TTGATTGGTTAAAATTCACA+TGG | + | chr2.1:20875223-20875242 | MS.gene031439:intron | 25.0% |
!!! | ATGACTTTTTAGAATTCACA+TGG | + | chr2.1:20875513-20875532 | MS.gene031439:intron | 25.0% |
!!! | TTGAATCTGAATGTTTTGAT+TGG | + | chr2.1:20875208-20875227 | MS.gene031439:intron | 25.0% |
AAAAAGAAGCAGAACACAAA+AGG | - | chr2.1:20874205-20874224 | None:intergenic | 30.0% | |
AAGACTTGCAAAACACAAAA+AGG | - | chr2.1:20874720-20874739 | None:intergenic | 30.0% | |
AATAAGCTGTTTATCCAAAC+AGG | - | chr2.1:20874909-20874928 | None:intergenic | 30.0% | |
AGAAACATTGCATACAATTC+AGG | - | chr2.1:20875619-20875638 | None:intergenic | 30.0% | |
ATATGGGACCCATATAAATT+TGG | - | chr2.1:20875255-20875274 | None:intergenic | 30.0% | |
ATGATATATTCACAAGCTGT+TGG | + | chr2.1:20874515-20874534 | MS.gene031439:intron | 30.0% | |
CATAAGCAAAAGTCATCTAT+TGG | - | chr2.1:20874598-20874617 | None:intergenic | 30.0% | |
GTTTGTAGATAGAACAAACA+GGG | + | chr2.1:20874883-20874902 | MS.gene031439:intron | 30.0% | |
TCAAAAATAGCAAAAAGGCT+AGG | + | chr2.1:20874654-20874673 | MS.gene031439:intron | 30.0% | |
TGAAATAGTGTTCAATGTGT+AGG | + | chr2.1:20875683-20875702 | MS.gene031439:intron | 30.0% | |
TGTTTGTAGATAGAACAAAC+AGG | + | chr2.1:20874882-20874901 | MS.gene031439:intron | 30.0% | |
TTCAACATACTCTCTTTGAT+TGG | - | chr2.1:20875306-20875325 | None:intergenic | 30.0% | |
TTTATCCATAAAGGCTTATC+AGG | - | chr2.1:20874956-20874975 | None:intergenic | 30.0% | |
!! | GCTGTTTTCATAAACTATCT+TGG | + | chr2.1:20875041-20875060 | MS.gene031439:intron | 30.0% |
AAAACCAACAAAGGTAGGTT+TGG | + | chr2.1:20873823-20873842 | MS.gene031439:CDS | 35.0% | |
AATGTAATACCTTCACCACA+AGG | - | chr2.1:20874126-20874145 | None:intergenic | 35.0% | |
AGGTTCTTCACATTACTACT+AGG | + | chr2.1:20874094-20874113 | MS.gene031439:CDS | 35.0% | |
ATAGATCCCACCAAATCATA+TGG | - | chr2.1:20875272-20875291 | None:intergenic | 35.0% | |
ATCACTTCCATGACAAGAAA+AGG | - | chr2.1:20875482-20875501 | None:intergenic | 35.0% | |
ATGTAATACCTTCACCACAA+GGG | - | chr2.1:20874125-20874144 | None:intergenic | 35.0% | |
CAAAAAGGAAAGAGAAGTCT+AGG | - | chr2.1:20874705-20874724 | None:intergenic | 35.0% | |
CACATAACAAGCAATAGAGT+AGG | - | chr2.1:20874305-20874324 | None:intergenic | 35.0% | |
CACTGAAAATACAACTAGAC+AGG | - | chr2.1:20874680-20874699 | None:intergenic | 35.0% | |
CTTATCCTGATAAGCCTTTA+TGG | + | chr2.1:20874948-20874967 | MS.gene031439:intron | 35.0% | |
GAATGCTTCTAGTCTAGTAT+GGG | + | chr2.1:20875372-20875391 | MS.gene031439:intron | 35.0% | |
GCTATAAAACCAACAAAGGT+AGG | + | chr2.1:20873818-20873837 | MS.gene031439:CDS | 35.0% | |
GTAATGTGAAGAACCTTAGT+AGG | - | chr2.1:20874090-20874109 | None:intergenic | 35.0% | |
TAATCTGCTTAACAACGTCT+GGG | - | chr2.1:20875828-20875847 | None:intergenic | 35.0% | |
TAGATCCCACCAAATCATAT+GGG | - | chr2.1:20875271-20875290 | None:intergenic | 35.0% | |
TATATGGGTCCCATATGATT+TGG | + | chr2.1:20875259-20875278 | MS.gene031439:intron | 35.0% | |
TGAATGCTTCTAGTCTAGTA+TGG | + | chr2.1:20875371-20875390 | MS.gene031439:intron | 35.0% | |
TGCTGCTATAAAACCAACAA+AGG | + | chr2.1:20873814-20873833 | MS.gene031439:CDS | 35.0% | |
TGTAAAGTTAGCTACAGCAA+TGG | + | chr2.1:20874616-20874635 | MS.gene031439:intron | 35.0% | |
TTCAAATCTATCCCAAGTGT+TGG | - | chr2.1:20875767-20875786 | None:intergenic | 35.0% | |
TTGTGTTGTGCTCTATGTTA+CGG | + | chr2.1:20874791-20874810 | MS.gene031439:intron | 35.0% | |
! | AAGTCATCTATTGGAGCATT+TGG | - | chr2.1:20874589-20874608 | None:intergenic | 35.0% |
! | CATGGAAGTGATTTTATGTC+TGG | + | chr2.1:20875490-20875509 | MS.gene031439:intron | 35.0% |
! | CTTGTTATGTGGAGGTTAAA+TGG | + | chr2.1:20874314-20874333 | MS.gene031439:intron | 35.0% |
!! | CTACTCTATTGCTTGTTATG+TGG | + | chr2.1:20874303-20874322 | MS.gene031439:intron | 35.0% |
!! | CTGTTTGGATTGGCTTATTT+GGG | - | chr2.1:20875131-20875150 | None:intergenic | 35.0% |
!! | TTGGAAAGGTATTTGCTCTT+TGG | + | chr2.1:20875182-20875201 | MS.gene031439:intron | 35.0% |
AAGCAATAGAGTAGGACTGA+AGG | - | chr2.1:20874297-20874316 | None:intergenic | 40.0% | |
AATCTGCTTAACAACGTCTG+GGG | - | chr2.1:20875827-20875846 | None:intergenic | 40.0% | |
AGAGAGTGATCCTAATCTTG+TGG | - | chr2.1:20873868-20873887 | None:intergenic | 40.0% | |
ATTTAGACTATGGGCCTGTT+TGG | - | chr2.1:20875146-20875165 | None:intergenic | 40.0% | |
CCAAATAAGCCAATCCAAAC+AGG | + | chr2.1:20875129-20875148 | MS.gene031439:intron | 40.0% | |
GAAACACCTTTCCACTCAAA+CGG | - | chr2.1:20874768-20874787 | None:intergenic | 40.0% | |
GGGACCCATATAAATTTGGT+GGG | - | chr2.1:20875251-20875270 | None:intergenic | 40.0% | |
GGGTCCCACCAAATTTATAT+GGG | + | chr2.1:20875244-20875263 | MS.gene031439:intron | 40.0% | |
GTAATCTGCTTAACAACGTC+TGG | - | chr2.1:20875829-20875848 | None:intergenic | 40.0% | |
TCTGATCTTGTTCCAAGTCA+TGG | + | chr2.1:20875573-20875592 | MS.gene031439:intron | 40.0% | |
TGCTAAGGACAAGCATCTTA+GGG | + | chr2.1:20874044-20874063 | MS.gene031439:CDS | 40.0% | |
TGGGACCCATATAAATTTGG+TGG | - | chr2.1:20875252-20875271 | None:intergenic | 40.0% | |
TGGGTCCCACCAAATTTATA+TGG | + | chr2.1:20875243-20875262 | MS.gene031439:intron | 40.0% | |
TGTAATACCTTCACCACAAG+GGG | - | chr2.1:20874124-20874143 | None:intergenic | 40.0% | |
TTCTATCTCTTCCGTTTGAG+TGG | + | chr2.1:20874754-20874773 | MS.gene031439:intron | 40.0% | |
! | TGTTTCAGGTACCAACACTT+GGG | + | chr2.1:20875753-20875772 | MS.gene031439:intron | 40.0% |
! | TTGTTTCAGGTACCAACACT+TGG | + | chr2.1:20875752-20875771 | MS.gene031439:intron | 40.0% |
!! | CCTGTTTGGATTGGCTTATT+TGG | - | chr2.1:20875132-20875151 | None:intergenic | 40.0% |
!! | CTCTATTGCTTGTTATGTGG+AGG | + | chr2.1:20874306-20874325 | MS.gene031439:intron | 40.0% |
ACCAACAAAGGTAGGTTTGG+AGG | + | chr2.1:20873826-20873845 | MS.gene031439:CDS | 45.0% | |
AGCATTAGTGTGAGCTTGTG+AGG | + | chr2.1:20874840-20874859 | MS.gene031439:intron | 45.0% | |
AGGAGCAGATCCACAAGATT+AGG | + | chr2.1:20873855-20873874 | MS.gene031439:CDS | 45.0% | |
CACGTCCAAAATCTCGAGAA+GGG | + | chr2.1:20873896-20873915 | MS.gene031439:CDS | 45.0% | |
CTGATTCTGTTCTTTGCGTG+TGG | + | chr2.1:20875436-20875455 | MS.gene031439:intron | 45.0% | |
GACAAGCATCTTAGGGTCAA+GGG | + | chr2.1:20874051-20874070 | MS.gene031439:CDS | 45.0% | |
GCTTCTAGTCTAGTATGGGT+TGG | + | chr2.1:20875376-20875395 | MS.gene031439:intron | 45.0% | |
GTGCTAAGGACAAGCATCTT+AGG | + | chr2.1:20874043-20874062 | MS.gene031439:CDS | 45.0% | |
GTTCTTTGCGTGTGGTTTGA+AGG | + | chr2.1:20875444-20875463 | MS.gene031439:intron | 45.0% | |
TAGAACAAACAGGGCCTGTT+TGG | + | chr2.1:20874892-20874911 | MS.gene031439:intron | 45.0% | |
TCCAAAATCTCGAGAAGGGT+GGG | + | chr2.1:20873900-20873919 | MS.gene031439:intron | 45.0% | |
TCCTCCAAACCTACCTTTGT+TGG | - | chr2.1:20873830-20873849 | None:intergenic | 45.0% | |
TCTCTTCCGTTTGAGTGGAA+AGG | + | chr2.1:20874759-20874778 | MS.gene031439:intron | 45.0% | |
TGAGCTTGTGAGGTTCGTTT+CGG | + | chr2.1:20874850-20874869 | MS.gene031439:intron | 45.0% | |
! | ATGGGTCCCATATGATTTGG+TGG | + | chr2.1:20875262-20875281 | MS.gene031439:intron | 45.0% |
! | GAGATTTTGGACGTGCTTAG+AGG | - | chr2.1:20873891-20873910 | None:intergenic | 45.0% |
! | GTGTTGGTACCTGAAACAAG+AGG | - | chr2.1:20875751-20875770 | None:intergenic | 45.0% |
! | TACGAGCTTCCTCTTGTTTC+AGG | + | chr2.1:20875739-20875758 | MS.gene031439:intron | 45.0% |
!! | GCTGTTAGTTTGTGCTGACT+TGG | + | chr2.1:20874014-20874033 | MS.gene031439:intron | 45.0% |
!! | TGGGTCCCATATGATTTGGT+GGG | + | chr2.1:20875263-20875282 | MS.gene031439:intron | 45.0% |
ACCAGGTTCGATGGTGATAG+AGG | - | chr2.1:20875851-20875870 | None:intergenic | 50.0% | |
ACCTCTATCACCATCGAACC+TGG | + | chr2.1:20875847-20875866 | MS.gene031439:CDS | 50.0% | |
ACCTGTCAGGATGCCTACTA+AGG | + | chr2.1:20874074-20874093 | MS.gene031439:CDS | 50.0% | |
ACCTTAGTAGGCATCCTGAC+AGG | - | chr2.1:20874078-20874097 | None:intergenic | 50.0% | |
ACTACTAGGAAGACCCCTTG+TGG | + | chr2.1:20874108-20874127 | MS.gene031439:CDS | 50.0% | |
CAACGTCTGGGGAACTGTAA+AGG | - | chr2.1:20875816-20875835 | None:intergenic | 50.0% | |
CAATGACCCTCTTGTGCACA+CGG | - | chr2.1:20875792-20875811 | None:intergenic | 50.0% | |
GACTATGGGCCTGTTTGGAT+TGG | - | chr2.1:20875141-20875160 | None:intergenic | 50.0% | |
GAGTAGGACTGAAGGACAAG+CGG | - | chr2.1:20874289-20874308 | None:intergenic | 50.0% | |
GCACGTCCAAAATCTCGAGA+AGG | + | chr2.1:20873895-20873914 | MS.gene031439:CDS | 50.0% | |
GGACAAGCATCTTAGGGTCA+AGG | + | chr2.1:20874050-20874069 | MS.gene031439:CDS | 50.0% | |
GTCCAAAATCTCGAGAAGGG+TGG | + | chr2.1:20873899-20873918 | MS.gene031439:intron | 50.0% | |
TGAACTCCGTGTGCACAAGA+GGG | + | chr2.1:20875783-20875802 | MS.gene031439:CDS | 50.0% | |
TTGAACTCCGTGTGCACAAG+AGG | + | chr2.1:20875782-20875801 | MS.gene031439:CDS | 50.0% | |
! | ACCCACCCTTCTCGAGATTT+TGG | - | chr2.1:20873904-20873923 | None:intergenic | 50.0% |
!! | GTTTGTGCTGACTTGGTTCG+TGG | + | chr2.1:20874021-20874040 | MS.gene031439:intron | 50.0% |
!! | TGACTTGGTTCGTGGTGCTA+AGG | + | chr2.1:20874029-20874048 | MS.gene031439:CDS | 50.0% |
AACCTCGACACCAGGTTCGA+TGG | - | chr2.1:20875860-20875879 | None:intergenic | 55.0% | |
AGGAAGACCCCTTGTGGTGA+AGG | + | chr2.1:20874114-20874133 | MS.gene031439:CDS | 55.0% | |
GGTAGGTTTGGAGGAGTCTC+AGG | + | chr2.1:20873835-20873854 | MS.gene031439:CDS | 55.0% | |
TTAGGGTCAAGGGACCTGTC+AGG | + | chr2.1:20874061-20874080 | MS.gene031439:CDS | 55.0% | |
GTCACCTCAACCTCGACACC+AGG | - | chr2.1:20875868-20875887 | None:intergenic | 60.0% | |
! | CACCATCGAACCTGGTGTCG+AGG | + | chr2.1:20875855-20875874 | MS.gene031439:CDS | 60.0% |
! | CGAACCTGGTGTCGAGGTTG+AGG | + | chr2.1:20875861-20875880 | MS.gene031439:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 20873803 | 20875903 | 20873803 | ID=MS.gene031439 |
chr2.1 | mRNA | 20873803 | 20875903 | 20873803 | ID=MS.gene031439.t1;Parent=MS.gene031439 |
chr2.1 | exon | 20873803 | 20873917 | 20873803 | ID=MS.gene031439.t1.exon1;Parent=MS.gene031439.t1 |
chr2.1 | CDS | 20873803 | 20873917 | 20873803 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
chr2.1 | exon | 20874022 | 20874135 | 20874022 | ID=MS.gene031439.t1.exon2;Parent=MS.gene031439.t1 |
chr2.1 | CDS | 20874022 | 20874135 | 20874022 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
chr2.1 | exon | 20875761 | 20875903 | 20875761 | ID=MS.gene031439.t1.exon3;Parent=MS.gene031439.t1 |
chr2.1 | CDS | 20875761 | 20875903 | 20875761 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
Gene Sequence |
Protein sequence |