Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031439.t1 | XP_003596745.1 | 100 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 1.10E-61 | 245.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031439.t1 | P49200 | 87.1 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.2e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031439.t1 | G7IRA1 | 100.0 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 7.8e-62 | 245.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031439 | MS.gene059832 | PPI |
| MS.gene017955 | MS.gene031439 | PPI |
| MS.gene031439 | MS.gene77739 | PPI |
| MS.gene031439 | MS.gene78060 | PPI |
| MS.gene72479 | MS.gene031439 | PPI |
| MS.gene031439 | MS.gene04591 | PPI |
| MS.gene031439 | MS.gene072375 | PPI |
| MS.gene068750 | MS.gene031439 | PPI |
| MS.gene045681 | MS.gene031439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031439.t1 | MTR_2g085090 | 100.000 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 3.49e-88 | 251 |
| MS.gene031439.t1 | MTR_1g091057 | 100.000 | 123 | 0 | 0 | 1 | 123 | 1 | 123 | 3.49e-88 | 251 |
| MS.gene031439.t1 | MTR_0157s0070 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 6.25e-84 | 241 |
| MS.gene031439.t1 | MTR_4g034030 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 6.25e-84 | 241 |
| MS.gene031439.t1 | MTR_7g092720 | 97.500 | 120 | 3 | 0 | 4 | 123 | 3 | 122 | 9.91e-84 | 240 |
| MS.gene031439.t1 | MTR_4g034030 | 98.824 | 85 | 1 | 0 | 39 | 123 | 3 | 87 | 2.50e-58 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031439.t1 | AT5G62300 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
| MS.gene031439.t1 | AT5G62300 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
| MS.gene031439.t1 | AT3G45030 | 87.097 | 124 | 15 | 1 | 1 | 123 | 1 | 124 | 1.54e-74 | 217 |
| MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
| MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
| MS.gene031439.t1 | AT3G47370 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 3.95e-74 | 216 |
Find 45 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCACCCTTCTCGAGATTT+TGG | 0.146140 | 2.1:-20873901 | None:intergenic |
| GTGCTAAGGACAAGCATCTT+AGG | 0.246369 | 2.1:+20874043 | MS.gene031439:CDS |
| GGTAGGTTTGGAGGAGTCTC+AGG | 0.385792 | 2.1:+20873835 | MS.gene031439:CDS |
| TCCTCCAAACCTACCTTTGT+TGG | 0.397160 | 2.1:-20873827 | None:intergenic |
| AAAACCAACAAAGGTAGGTT+TGG | 0.397934 | 2.1:+20873823 | MS.gene031439:CDS |
| GTAATCTGCTTAACAACGTC+TGG | 0.415218 | 2.1:-20875826 | None:intergenic |
| GCTGTTAGTTTGTGCTGACT+TGG | 0.426562 | 2.1:+20874014 | MS.gene031439:intron |
| TTGAACTCCGTGTGCACAAG+AGG | 0.436894 | 2.1:+20875782 | MS.gene031439:CDS |
| AGGAGCAGATCCACAAGATT+AGG | 0.453895 | 2.1:+20873855 | MS.gene031439:CDS |
| AGGTTCTTCACATTACTACT+AGG | 0.481361 | 2.1:+20874094 | MS.gene031439:CDS |
| GTAATGTGAAGAACCTTAGT+AGG | 0.488319 | 2.1:-20874087 | None:intergenic |
| TTGTTTCAGGTACCAACACT+TGG | 0.488993 | 2.1:+20875752 | MS.gene031439:intron |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 2.1:-20875848 | None:intergenic |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.496706 | 2.1:+20875861 | MS.gene031439:CDS |
| CAACGTCTGGGGAACTGTAA+AGG | 0.512765 | 2.1:-20875813 | None:intergenic |
| ACCTGTCAGGATGCCTACTA+AGG | 0.514666 | 2.1:+20874074 | MS.gene031439:CDS |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 2.1:+20875847 | MS.gene031439:CDS |
| GTTTGTGCTGACTTGGTTCG+TGG | 0.525514 | 2.1:+20874021 | MS.gene031439:intron |
| GCTATAAAACCAACAAAGGT+AGG | 0.526218 | 2.1:+20873818 | MS.gene031439:CDS |
| ACCAACAAAGGTAGGTTTGG+AGG | 0.528672 | 2.1:+20873826 | MS.gene031439:CDS |
| TGCTAAGGACAAGCATCTTA+GGG | 0.529942 | 2.1:+20874044 | MS.gene031439:CDS |
| TTAGGGTCAAGGGACCTGTC+AGG | 0.530594 | 2.1:+20874061 | MS.gene031439:CDS |
| AGGAAGACCCCTTGTGGTGA+AGG | 0.532764 | 2.1:+20874114 | MS.gene031439:CDS |
| TAATCTGCTTAACAACGTCT+GGG | 0.545211 | 2.1:-20875825 | None:intergenic |
| TGACTTGGTTCGTGGTGCTA+AGG | 0.550440 | 2.1:+20874029 | MS.gene031439:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 2.1:-20875857 | None:intergenic |
| ACCTTAGTAGGCATCCTGAC+AGG | 0.553261 | 2.1:-20874075 | None:intergenic |
| GTCACCTCAACCTCGACACC+AGG | 0.559183 | 2.1:-20875865 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 2.1:+20875855 | MS.gene031439:CDS |
| GGACAAGCATCTTAGGGTCA+AGG | 0.562678 | 2.1:+20874050 | MS.gene031439:CDS |
| CAATGACCCTCTTGTGCACA+CGG | 0.568374 | 2.1:-20875789 | None:intergenic |
| AGAGAGTGATCCTAATCTTG+TGG | 0.570336 | 2.1:-20873865 | None:intergenic |
| GACAAGCATCTTAGGGTCAA+GGG | 0.571703 | 2.1:+20874051 | MS.gene031439:CDS |
| TTCAAATCTATCCCAAGTGT+TGG | 0.578144 | 2.1:-20875764 | None:intergenic |
| TGTTTCAGGTACCAACACTT+GGG | 0.590556 | 2.1:+20875753 | MS.gene031439:intron |
| GCACGTCCAAAATCTCGAGA+AGG | 0.598053 | 2.1:+20873895 | MS.gene031439:CDS |
| CACGTCCAAAATCTCGAGAA+GGG | 0.604361 | 2.1:+20873896 | MS.gene031439:CDS |
| TGTAATACCTTCACCACAAG+GGG | 0.605448 | 2.1:-20874121 | None:intergenic |
| TGCTGCTATAAAACCAACAA+AGG | 0.618513 | 2.1:+20873814 | MS.gene031439:CDS |
| TCAAGATCAAGCGTCTGCAA+TGG | 0.624541 | 2.1:-20875887 | None:intergenic |
| AATGTAATACCTTCACCACA+AGG | 0.648603 | 2.1:-20874123 | None:intergenic |
| ATGTAATACCTTCACCACAA+GGG | 0.650245 | 2.1:-20874122 | None:intergenic |
| TGAACTCCGTGTGCACAAGA+GGG | 0.668892 | 2.1:+20875783 | MS.gene031439:CDS |
| ACTACTAGGAAGACCCCTTG+TGG | 0.691181 | 2.1:+20874108 | MS.gene031439:CDS |
| AATCTGCTTAACAACGTCTG+GGG | 0.738536 | 2.1:-20875824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATCTCATTTTTT+TGG | + | chr2.1:20875163-20875182 | MS.gene031439:intron | 10.0% |
| !!! | ATTTTTTTTTTATTATTGTG+TGG | + | chr2.1:20874169-20874188 | MS.gene031439:intron | 10.0% |
| !! | AAGATTATGAATTATATTCT+GGG | - | chr2.1:20875539-20875558 | None:intergenic | 15.0% |
| !! | AGATAAAAAATTTAGACTAT+GGG | - | chr2.1:20875155-20875174 | None:intergenic | 15.0% |
| !! | AAGAATTTAGTAGAGTTATT+TGG | + | chr2.1:20874449-20874468 | MS.gene031439:intron | 20.0% |
| !! | AATAAAAGTTTCACGATAAT+TGG | - | chr2.1:20874820-20874839 | None:intergenic | 20.0% |
| !! | AATGTAATGAAAGTAGTAAT+AGG | + | chr2.1:20874392-20874411 | MS.gene031439:intron | 20.0% |
| !! | ATTTCAAAAATCATATCAGA+AGG | - | chr2.1:20875669-20875688 | None:intergenic | 20.0% |
| !! | ATTTGGATTTAATGATCTAT+AGG | + | chr2.1:20874466-20874485 | MS.gene031439:intron | 20.0% |
| !! | CAAGATTATGAATTATATTC+TGG | - | chr2.1:20875540-20875559 | None:intergenic | 20.0% |
| !! | GAGATAAAAAATTTAGACTA+TGG | - | chr2.1:20875156-20875175 | None:intergenic | 20.0% |
| !! | TTATGTAAGTTTATCCATAA+AGG | - | chr2.1:20874965-20874984 | None:intergenic | 20.0% |
| !! | TTTGGATTTAATGATCTATA+GGG | + | chr2.1:20874467-20874486 | MS.gene031439:intron | 20.0% |
| !!! | TTTATCTCATTTTTTTGGAA+AGG | + | chr2.1:20875168-20875187 | MS.gene031439:intron | 20.0% |
| !!! | TTTTCTCAAAAATAGCAAAA+AGG | + | chr2.1:20874649-20874668 | MS.gene031439:intron | 20.0% |
| ! | AAAATTACATTTCCATGACT+TGG | - | chr2.1:20875588-20875607 | None:intergenic | 25.0% |
| ! | AAATGGTTTCAGAAAATTCA+TGG | + | chr2.1:20874331-20874350 | MS.gene031439:intron | 25.0% |
| ! | AATTCTTTCAATAACTCACT+AGG | - | chr2.1:20874436-20874455 | None:intergenic | 25.0% |
| ! | ATAAATAACTACACATAGCA+TGG | - | chr2.1:20875409-20875428 | None:intergenic | 25.0% |
| ! | ATGTGTAGTTATTTATCTCA+TGG | + | chr2.1:20875413-20875432 | MS.gene031439:intron | 25.0% |
| ! | GATTTAATGAAAGTAGTGAT+AGG | + | chr2.1:20874355-20874374 | MS.gene031439:intron | 25.0% |
| ! | TCACTAAATATGCTTATGTT+TGG | + | chr2.1:20873974-20873993 | MS.gene031439:intron | 25.0% |
| ! | TCATAAAAATGCATACAGAA+TGG | - | chr2.1:20874250-20874269 | None:intergenic | 25.0% |
| !! | TATATTTCCTTTTCTTGTCA+TGG | + | chr2.1:20875472-20875491 | MS.gene031439:intron | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | + | chr2.1:20875224-20875243 | MS.gene031439:intron | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | + | chr2.1:20875223-20875242 | MS.gene031439:intron | 25.0% |
| !!! | ATGACTTTTTAGAATTCACA+TGG | + | chr2.1:20875513-20875532 | MS.gene031439:intron | 25.0% |
| !!! | TTGAATCTGAATGTTTTGAT+TGG | + | chr2.1:20875208-20875227 | MS.gene031439:intron | 25.0% |
| AAAAAGAAGCAGAACACAAA+AGG | - | chr2.1:20874205-20874224 | None:intergenic | 30.0% | |
| AAGACTTGCAAAACACAAAA+AGG | - | chr2.1:20874720-20874739 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr2.1:20874909-20874928 | None:intergenic | 30.0% | |
| AGAAACATTGCATACAATTC+AGG | - | chr2.1:20875619-20875638 | None:intergenic | 30.0% | |
| ATATGGGACCCATATAAATT+TGG | - | chr2.1:20875255-20875274 | None:intergenic | 30.0% | |
| ATGATATATTCACAAGCTGT+TGG | + | chr2.1:20874515-20874534 | MS.gene031439:intron | 30.0% | |
| CATAAGCAAAAGTCATCTAT+TGG | - | chr2.1:20874598-20874617 | None:intergenic | 30.0% | |
| GTTTGTAGATAGAACAAACA+GGG | + | chr2.1:20874883-20874902 | MS.gene031439:intron | 30.0% | |
| TCAAAAATAGCAAAAAGGCT+AGG | + | chr2.1:20874654-20874673 | MS.gene031439:intron | 30.0% | |
| TGAAATAGTGTTCAATGTGT+AGG | + | chr2.1:20875683-20875702 | MS.gene031439:intron | 30.0% | |
| TGTTTGTAGATAGAACAAAC+AGG | + | chr2.1:20874882-20874901 | MS.gene031439:intron | 30.0% | |
| TTCAACATACTCTCTTTGAT+TGG | - | chr2.1:20875306-20875325 | None:intergenic | 30.0% | |
| TTTATCCATAAAGGCTTATC+AGG | - | chr2.1:20874956-20874975 | None:intergenic | 30.0% | |
| !! | GCTGTTTTCATAAACTATCT+TGG | + | chr2.1:20875041-20875060 | MS.gene031439:intron | 30.0% |
| AAAACCAACAAAGGTAGGTT+TGG | + | chr2.1:20873823-20873842 | MS.gene031439:CDS | 35.0% | |
| AATGTAATACCTTCACCACA+AGG | - | chr2.1:20874126-20874145 | None:intergenic | 35.0% | |
| AGGTTCTTCACATTACTACT+AGG | + | chr2.1:20874094-20874113 | MS.gene031439:CDS | 35.0% | |
| ATAGATCCCACCAAATCATA+TGG | - | chr2.1:20875272-20875291 | None:intergenic | 35.0% | |
| ATCACTTCCATGACAAGAAA+AGG | - | chr2.1:20875482-20875501 | None:intergenic | 35.0% | |
| ATGTAATACCTTCACCACAA+GGG | - | chr2.1:20874125-20874144 | None:intergenic | 35.0% | |
| CAAAAAGGAAAGAGAAGTCT+AGG | - | chr2.1:20874705-20874724 | None:intergenic | 35.0% | |
| CACATAACAAGCAATAGAGT+AGG | - | chr2.1:20874305-20874324 | None:intergenic | 35.0% | |
| CACTGAAAATACAACTAGAC+AGG | - | chr2.1:20874680-20874699 | None:intergenic | 35.0% | |
| CTTATCCTGATAAGCCTTTA+TGG | + | chr2.1:20874948-20874967 | MS.gene031439:intron | 35.0% | |
| GAATGCTTCTAGTCTAGTAT+GGG | + | chr2.1:20875372-20875391 | MS.gene031439:intron | 35.0% | |
| GCTATAAAACCAACAAAGGT+AGG | + | chr2.1:20873818-20873837 | MS.gene031439:CDS | 35.0% | |
| GTAATGTGAAGAACCTTAGT+AGG | - | chr2.1:20874090-20874109 | None:intergenic | 35.0% | |
| TAATCTGCTTAACAACGTCT+GGG | - | chr2.1:20875828-20875847 | None:intergenic | 35.0% | |
| TAGATCCCACCAAATCATAT+GGG | - | chr2.1:20875271-20875290 | None:intergenic | 35.0% | |
| TATATGGGTCCCATATGATT+TGG | + | chr2.1:20875259-20875278 | MS.gene031439:intron | 35.0% | |
| TGAATGCTTCTAGTCTAGTA+TGG | + | chr2.1:20875371-20875390 | MS.gene031439:intron | 35.0% | |
| TGCTGCTATAAAACCAACAA+AGG | + | chr2.1:20873814-20873833 | MS.gene031439:CDS | 35.0% | |
| TGTAAAGTTAGCTACAGCAA+TGG | + | chr2.1:20874616-20874635 | MS.gene031439:intron | 35.0% | |
| TTCAAATCTATCCCAAGTGT+TGG | - | chr2.1:20875767-20875786 | None:intergenic | 35.0% | |
| TTGTGTTGTGCTCTATGTTA+CGG | + | chr2.1:20874791-20874810 | MS.gene031439:intron | 35.0% | |
| ! | AAGTCATCTATTGGAGCATT+TGG | - | chr2.1:20874589-20874608 | None:intergenic | 35.0% |
| ! | CATGGAAGTGATTTTATGTC+TGG | + | chr2.1:20875490-20875509 | MS.gene031439:intron | 35.0% |
| ! | CTTGTTATGTGGAGGTTAAA+TGG | + | chr2.1:20874314-20874333 | MS.gene031439:intron | 35.0% |
| !! | CTACTCTATTGCTTGTTATG+TGG | + | chr2.1:20874303-20874322 | MS.gene031439:intron | 35.0% |
| !! | CTGTTTGGATTGGCTTATTT+GGG | - | chr2.1:20875131-20875150 | None:intergenic | 35.0% |
| !! | TTGGAAAGGTATTTGCTCTT+TGG | + | chr2.1:20875182-20875201 | MS.gene031439:intron | 35.0% |
| AAGCAATAGAGTAGGACTGA+AGG | - | chr2.1:20874297-20874316 | None:intergenic | 40.0% | |
| AATCTGCTTAACAACGTCTG+GGG | - | chr2.1:20875827-20875846 | None:intergenic | 40.0% | |
| AGAGAGTGATCCTAATCTTG+TGG | - | chr2.1:20873868-20873887 | None:intergenic | 40.0% | |
| ATTTAGACTATGGGCCTGTT+TGG | - | chr2.1:20875146-20875165 | None:intergenic | 40.0% | |
| CCAAATAAGCCAATCCAAAC+AGG | + | chr2.1:20875129-20875148 | MS.gene031439:intron | 40.0% | |
| GAAACACCTTTCCACTCAAA+CGG | - | chr2.1:20874768-20874787 | None:intergenic | 40.0% | |
| GGGACCCATATAAATTTGGT+GGG | - | chr2.1:20875251-20875270 | None:intergenic | 40.0% | |
| GGGTCCCACCAAATTTATAT+GGG | + | chr2.1:20875244-20875263 | MS.gene031439:intron | 40.0% | |
| GTAATCTGCTTAACAACGTC+TGG | - | chr2.1:20875829-20875848 | None:intergenic | 40.0% | |
| TCTGATCTTGTTCCAAGTCA+TGG | + | chr2.1:20875573-20875592 | MS.gene031439:intron | 40.0% | |
| TGCTAAGGACAAGCATCTTA+GGG | + | chr2.1:20874044-20874063 | MS.gene031439:CDS | 40.0% | |
| TGGGACCCATATAAATTTGG+TGG | - | chr2.1:20875252-20875271 | None:intergenic | 40.0% | |
| TGGGTCCCACCAAATTTATA+TGG | + | chr2.1:20875243-20875262 | MS.gene031439:intron | 40.0% | |
| TGTAATACCTTCACCACAAG+GGG | - | chr2.1:20874124-20874143 | None:intergenic | 40.0% | |
| TTCTATCTCTTCCGTTTGAG+TGG | + | chr2.1:20874754-20874773 | MS.gene031439:intron | 40.0% | |
| ! | TGTTTCAGGTACCAACACTT+GGG | + | chr2.1:20875753-20875772 | MS.gene031439:intron | 40.0% |
| ! | TTGTTTCAGGTACCAACACT+TGG | + | chr2.1:20875752-20875771 | MS.gene031439:intron | 40.0% |
| !! | CCTGTTTGGATTGGCTTATT+TGG | - | chr2.1:20875132-20875151 | None:intergenic | 40.0% |
| !! | CTCTATTGCTTGTTATGTGG+AGG | + | chr2.1:20874306-20874325 | MS.gene031439:intron | 40.0% |
| ACCAACAAAGGTAGGTTTGG+AGG | + | chr2.1:20873826-20873845 | MS.gene031439:CDS | 45.0% | |
| AGCATTAGTGTGAGCTTGTG+AGG | + | chr2.1:20874840-20874859 | MS.gene031439:intron | 45.0% | |
| AGGAGCAGATCCACAAGATT+AGG | + | chr2.1:20873855-20873874 | MS.gene031439:CDS | 45.0% | |
| CACGTCCAAAATCTCGAGAA+GGG | + | chr2.1:20873896-20873915 | MS.gene031439:CDS | 45.0% | |
| CTGATTCTGTTCTTTGCGTG+TGG | + | chr2.1:20875436-20875455 | MS.gene031439:intron | 45.0% | |
| GACAAGCATCTTAGGGTCAA+GGG | + | chr2.1:20874051-20874070 | MS.gene031439:CDS | 45.0% | |
| GCTTCTAGTCTAGTATGGGT+TGG | + | chr2.1:20875376-20875395 | MS.gene031439:intron | 45.0% | |
| GTGCTAAGGACAAGCATCTT+AGG | + | chr2.1:20874043-20874062 | MS.gene031439:CDS | 45.0% | |
| GTTCTTTGCGTGTGGTTTGA+AGG | + | chr2.1:20875444-20875463 | MS.gene031439:intron | 45.0% | |
| TAGAACAAACAGGGCCTGTT+TGG | + | chr2.1:20874892-20874911 | MS.gene031439:intron | 45.0% | |
| TCCAAAATCTCGAGAAGGGT+GGG | + | chr2.1:20873900-20873919 | MS.gene031439:intron | 45.0% | |
| TCCTCCAAACCTACCTTTGT+TGG | - | chr2.1:20873830-20873849 | None:intergenic | 45.0% | |
| TCTCTTCCGTTTGAGTGGAA+AGG | + | chr2.1:20874759-20874778 | MS.gene031439:intron | 45.0% | |
| TGAGCTTGTGAGGTTCGTTT+CGG | + | chr2.1:20874850-20874869 | MS.gene031439:intron | 45.0% | |
| ! | ATGGGTCCCATATGATTTGG+TGG | + | chr2.1:20875262-20875281 | MS.gene031439:intron | 45.0% |
| ! | GAGATTTTGGACGTGCTTAG+AGG | - | chr2.1:20873891-20873910 | None:intergenic | 45.0% |
| ! | GTGTTGGTACCTGAAACAAG+AGG | - | chr2.1:20875751-20875770 | None:intergenic | 45.0% |
| ! | TACGAGCTTCCTCTTGTTTC+AGG | + | chr2.1:20875739-20875758 | MS.gene031439:intron | 45.0% |
| !! | GCTGTTAGTTTGTGCTGACT+TGG | + | chr2.1:20874014-20874033 | MS.gene031439:intron | 45.0% |
| !! | TGGGTCCCATATGATTTGGT+GGG | + | chr2.1:20875263-20875282 | MS.gene031439:intron | 45.0% |
| ACCAGGTTCGATGGTGATAG+AGG | - | chr2.1:20875851-20875870 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | + | chr2.1:20875847-20875866 | MS.gene031439:CDS | 50.0% | |
| ACCTGTCAGGATGCCTACTA+AGG | + | chr2.1:20874074-20874093 | MS.gene031439:CDS | 50.0% | |
| ACCTTAGTAGGCATCCTGAC+AGG | - | chr2.1:20874078-20874097 | None:intergenic | 50.0% | |
| ACTACTAGGAAGACCCCTTG+TGG | + | chr2.1:20874108-20874127 | MS.gene031439:CDS | 50.0% | |
| CAACGTCTGGGGAACTGTAA+AGG | - | chr2.1:20875816-20875835 | None:intergenic | 50.0% | |
| CAATGACCCTCTTGTGCACA+CGG | - | chr2.1:20875792-20875811 | None:intergenic | 50.0% | |
| GACTATGGGCCTGTTTGGAT+TGG | - | chr2.1:20875141-20875160 | None:intergenic | 50.0% | |
| GAGTAGGACTGAAGGACAAG+CGG | - | chr2.1:20874289-20874308 | None:intergenic | 50.0% | |
| GCACGTCCAAAATCTCGAGA+AGG | + | chr2.1:20873895-20873914 | MS.gene031439:CDS | 50.0% | |
| GGACAAGCATCTTAGGGTCA+AGG | + | chr2.1:20874050-20874069 | MS.gene031439:CDS | 50.0% | |
| GTCCAAAATCTCGAGAAGGG+TGG | + | chr2.1:20873899-20873918 | MS.gene031439:intron | 50.0% | |
| TGAACTCCGTGTGCACAAGA+GGG | + | chr2.1:20875783-20875802 | MS.gene031439:CDS | 50.0% | |
| TTGAACTCCGTGTGCACAAG+AGG | + | chr2.1:20875782-20875801 | MS.gene031439:CDS | 50.0% | |
| ! | ACCCACCCTTCTCGAGATTT+TGG | - | chr2.1:20873904-20873923 | None:intergenic | 50.0% |
| !! | GTTTGTGCTGACTTGGTTCG+TGG | + | chr2.1:20874021-20874040 | MS.gene031439:intron | 50.0% |
| !! | TGACTTGGTTCGTGGTGCTA+AGG | + | chr2.1:20874029-20874048 | MS.gene031439:CDS | 50.0% |
| AACCTCGACACCAGGTTCGA+TGG | - | chr2.1:20875860-20875879 | None:intergenic | 55.0% | |
| AGGAAGACCCCTTGTGGTGA+AGG | + | chr2.1:20874114-20874133 | MS.gene031439:CDS | 55.0% | |
| GGTAGGTTTGGAGGAGTCTC+AGG | + | chr2.1:20873835-20873854 | MS.gene031439:CDS | 55.0% | |
| TTAGGGTCAAGGGACCTGTC+AGG | + | chr2.1:20874061-20874080 | MS.gene031439:CDS | 55.0% | |
| GTCACCTCAACCTCGACACC+AGG | - | chr2.1:20875868-20875887 | None:intergenic | 60.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | + | chr2.1:20875855-20875874 | MS.gene031439:CDS | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | + | chr2.1:20875861-20875880 | MS.gene031439:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 20873803 | 20875903 | 20873803 | ID=MS.gene031439 |
| chr2.1 | mRNA | 20873803 | 20875903 | 20873803 | ID=MS.gene031439.t1;Parent=MS.gene031439 |
| chr2.1 | exon | 20873803 | 20873917 | 20873803 | ID=MS.gene031439.t1.exon1;Parent=MS.gene031439.t1 |
| chr2.1 | CDS | 20873803 | 20873917 | 20873803 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
| chr2.1 | exon | 20874022 | 20874135 | 20874022 | ID=MS.gene031439.t1.exon2;Parent=MS.gene031439.t1 |
| chr2.1 | CDS | 20874022 | 20874135 | 20874022 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
| chr2.1 | exon | 20875761 | 20875903 | 20875761 | ID=MS.gene031439.t1.exon3;Parent=MS.gene031439.t1 |
| chr2.1 | CDS | 20875761 | 20875903 | 20875761 | ID=cds.MS.gene031439.t1;Parent=MS.gene031439.t1 |
| Gene Sequence |
| Protein sequence |