AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059832

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059832.t1 MTR_2g085090 99.187 123 1 0 1 123 1 123 1.16e-87 250
MS.gene059832.t1 MTR_1g091057 99.187 123 1 0 1 123 1 123 1.16e-87 250
MS.gene059832.t1 MTR_0157s0070 96.667 120 4 0 4 123 3 122 2.02e-83 239
MS.gene059832.t1 MTR_4g034030 96.667 120 4 0 4 123 3 122 2.02e-83 239
MS.gene059832.t1 MTR_7g092720 96.667 120 4 0 4 123 3 122 3.86e-83 239
MS.gene059832.t1 MTR_4g034030 98.824 85 1 0 39 123 3 87 2.94e-58 175
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059832.t1 AT3G47370 87.500 120 15 0 4 123 3 122 5.14e-74 216
MS.gene059832.t1 AT3G47370 87.500 120 15 0 4 123 3 122 5.14e-74 216
MS.gene059832.t1 AT3G47370 87.500 120 15 0 4 123 3 122 5.14e-74 216
MS.gene059832.t1 AT5G62300 86.290 124 16 1 1 123 1 124 5.49e-74 216
MS.gene059832.t1 AT5G62300 86.290 124 16 1 1 123 1 124 5.49e-74 216
MS.gene059832.t1 AT3G45030 86.290 124 16 1 1 123 1 124 5.49e-74 216

Find 42 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCACCCTTCTCAAGATTT+TGG 0.163280 2.4:+18334593 None:intergenic
GTGCTAAGGACAAGCATCTT+AGG 0.246369 2.4:-18334451 MS.gene059832:CDS
TCCTCCAAACCTACCTTTGT+TGG 0.379765 2.4:+18334667 None:intergenic
AAAACCAACAAAGGTAGGTT+TGG 0.397934 2.4:-18334671 MS.gene059832:CDS
CTGTTTCAGGTACCAACACT+TGG 0.402075 2.4:-18332700 MS.gene059832:intron
GTAATCTGCTTAACAACGTC+TGG 0.415218 2.4:+18332626 None:intergenic
TTGAACTCCGTGTGCACAAG+AGG 0.436894 2.4:-18332670 MS.gene059832:CDS
GGTAGGTTTGGAGGATTCTC+AGG 0.443866 2.4:-18334659 MS.gene059832:CDS
AGGAGCAGATCCACAAGATT+AGG 0.453895 2.4:-18334639 MS.gene059832:CDS
GTTGTTAGTTTGTGCTGACT+TGG 0.466618 2.4:-18334480 MS.gene059832:intron
AGGTTCTTCACATTACTACT+AGG 0.481361 2.4:-18334400 MS.gene059832:CDS
GTAATGTGAAGAACCTTAGT+AGG 0.488319 2.4:+18334407 None:intergenic
ACCAGGTTCGATGGTGATAG+AGG 0.489959 2.4:+18332604 None:intergenic
CGAACCTGGTGTCGAGGTTG+AGG 0.496706 2.4:-18332591 MS.gene059832:CDS
ACCAACAAAGGTAGGTTTGG+AGG 0.499020 2.4:-18334668 MS.gene059832:CDS
CAACGTCTGGGGAACTGTAA+AGG 0.512765 2.4:+18332639 None:intergenic
ACCTGTCAGGATGCCTACTA+AGG 0.514666 2.4:-18334420 MS.gene059832:CDS
ACCTCTATCACCATCGAACC+TGG 0.519945 2.4:-18332605 MS.gene059832:CDS
GTTTGTGCTGACTTGGTTCG+TGG 0.525514 2.4:-18334473 MS.gene059832:CDS
GCTATAAAACCAACAAAGGT+AGG 0.526218 2.4:-18334676 MS.gene059832:CDS
TGCTAAGGACAAGCATCTTA+GGG 0.529942 2.4:-18334450 MS.gene059832:CDS
TTAGGGTCAAGGGACCTGTC+AGG 0.530594 2.4:-18334433 MS.gene059832:CDS
AGGAAGACCCCTTGTGGTGA+AGG 0.532764 2.4:-18334380 MS.gene059832:intron
TAATCTGCTTAACAACGTCT+GGG 0.545211 2.4:+18332627 None:intergenic
TGACTTGGTTCGTGGTGCTA+AGG 0.550440 2.4:-18334465 MS.gene059832:CDS
AACCTCGACACCAGGTTCGA+TGG 0.552766 2.4:+18332595 None:intergenic
ACCTTAGTAGGCATCCTGAC+AGG 0.553261 2.4:+18334419 None:intergenic
GTCACCTCAACCTCGACACC+AGG 0.559183 2.4:+18332587 None:intergenic
CACCATCGAACCTGGTGTCG+AGG 0.559437 2.4:-18332597 MS.gene059832:CDS
GGACAAGCATCTTAGGGTCA+AGG 0.562678 2.4:-18334444 MS.gene059832:CDS
CAATGACCCTCTTGTGCACA+CGG 0.568374 2.4:+18332663 None:intergenic
AGAGAGTGATCCTAATCTTG+TGG 0.570336 2.4:+18334629 None:intergenic
GACAAGCATCTTAGGGTCAA+GGG 0.571703 2.4:-18334443 MS.gene059832:CDS
GCACGTCCAAAATCTTGAGA+AGG 0.572845 2.4:-18334599 MS.gene059832:CDS
TTCAAATCTATCCCAAGTGT+TGG 0.578144 2.4:+18332688 None:intergenic
CACGTCCAAAATCTTGAGAA+GGG 0.584353 2.4:-18334598 MS.gene059832:intron
TGTTTCAGGTACCAACACTT+GGG 0.590556 2.4:-18332699 MS.gene059832:intron
TGCTGCTATAAAACCAACAA+AGG 0.618513 2.4:-18334680 MS.gene059832:CDS
TCAAGATCAAGCGTCAGCAA+TGG 0.636081 2.4:+18332565 None:intergenic
TGAACTCCGTGTGCACAAGA+GGG 0.668892 2.4:-18332669 MS.gene059832:CDS
ACTACTAGGAAGACCCCTTG+TGG 0.691181 2.4:-18334386 MS.gene059832:CDS
AATCTGCTTAACAACGTCTG+GGG 0.738536 2.4:+18332628 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTATGAATTATATTTT+GGG + chr2.4:18334332-18334351 None:intergenic 10.0%
!! ATAATTTATGATATATTCAC+AGG - chr2.4:18333265-18333284 MS.gene059832:intron 15.0%
!! TATGGATTTAATGATTTATA+GGG - chr2.4:18333224-18333243 MS.gene059832:intron 15.0%
!! TTATGGATTTAATGATTTAT+AGG - chr2.4:18333223-18333242 MS.gene059832:intron 15.0%
!! TTTACTATAAAAATAGTTGA+TGG + chr2.4:18333658-18333677 None:intergenic 15.0%
!!! AGATTATGAATTATATTTTG+GGG + chr2.4:18334331-18334350 None:intergenic 15.0%
!!! CAAGATTATGAATTATATTT+TGG + chr2.4:18334333-18334352 None:intergenic 15.0%
!!! TAAAAGTTAAACTGTTTTTT+TGG - chr2.4:18333686-18333705 MS.gene059832:intron 15.0%
!!! TAAAATTTGTTTTTATTGTG+TGG - chr2.4:18332935-18332954 MS.gene059832:intron 15.0%
!!! TTTTATCTCATTTTTTTGAA+TGG - chr2.4:18334058-18334077 MS.gene059832:intron 15.0%
!! AATGTAATGAAAGTAGTAAT+AGG - chr2.4:18333158-18333177 MS.gene059832:intron 20.0%
!! GAGATAAAAATTTAGACTAT+GGG + chr2.4:18334047-18334066 None:intergenic 20.0%
!! TGAGATAAAAATTTAGACTA+TGG + chr2.4:18334048-18334067 None:intergenic 20.0%
!! TTGTGTAGTTATTTATATCA+TGG - chr2.4:18334200-18334219 MS.gene059832:intron 20.0%
!!! TCACTAAATATGCTTATTTT+TGG - chr2.4:18332742-18332761 MS.gene059832:intron 20.0%
!!! TTTTCTCAAAAATAGCAAAA+AGG - chr2.4:18333406-18333425 MS.gene059832:intron 20.0%
! AAATGGTTTCACAAAATTCA+TGG - chr2.4:18333097-18333116 MS.gene059832:intron 25.0%
! GAAATTATATTTCCTTGACT+TGG + chr2.4:18334381-18334400 None:intergenic 25.0%
! GGAAAAACACAATTAAAATC+AGG + chr2.4:18333034-18333053 None:intergenic 25.0%
!! AAAACAGTTTAACTTTAACC+AGG + chr2.4:18333866-18333885 None:intergenic 25.0%
!! AGCTATTGAAAGAGTTTTTA+TGG - chr2.4:18333206-18333225 MS.gene059832:intron 25.0%
!!! TTTGAATGGTATTTGCTATT+TGG - chr2.4:18334072-18334091 MS.gene059832:intron 25.0%
AAAAAGAAGCAGAACACAAA+AGG + chr2.4:18332971-18332990 None:intergenic 30.0%
AATAAGATCCTTATCCAAAC+AGG + chr2.4:18333584-18333603 None:intergenic 30.0%
ACTGAAAAATACAACTAGAC+AGG + chr2.4:18333437-18333456 None:intergenic 30.0%
ACTTCAAAAATCAAGTCAGA+AGG + chr2.4:18334477-18334496 None:intergenic 30.0%
ATTTGTTCTATCTACAAGCA+CGG + chr2.4:18333557-18333576 None:intergenic 30.0%
GATTTAATGACAGTAGTGAT+AGG - chr2.4:18333121-18333140 MS.gene059832:intron 30.0%
GCTTGTAGATAGAACAAATA+GGG - chr2.4:18333558-18333577 MS.gene059832:intron 30.0%
TAGACTTGCAAAACACAAAA+AGG + chr2.4:18333478-18333497 None:intergenic 30.0%
TGCTTGTAGATAGAACAAAT+AGG - chr2.4:18333557-18333576 MS.gene059832:intron 30.0%
! AAGTATTGTGTTCAATGTGT+AGG - chr2.4:18334493-18334512 MS.gene059832:intron 30.0%
!! AAATCATCTCTAGAAGCATT+TGG + chr2.4:18333346-18333365 None:intergenic 30.0%
!! GTTGTTTTCATGAACTATCT+TGG - chr2.4:18333900-18333919 MS.gene059832:intron 30.0%
!! TTCTATCTCTTCAGTTTTAG+TGG - chr2.4:18333512-18333531 MS.gene059832:intron 30.0%
!!! ATGAATTATATTTTGGGGCT+TGG + chr2.4:18334326-18334345 None:intergenic 30.0%
!!! TGAATTATATTTTGGGGCTT+GGG + chr2.4:18334325-18334344 None:intergenic 30.0%
AAAACCAACAAAGGTAGGTT+TGG - chr2.4:18332591-18332610 MS.gene059832:CDS 35.0%
AACTCTTTCAATAGCTCACT+AGG + chr2.4:18333202-18333221 None:intergenic 35.0%
ACTTGAATCTGAATCTTCCT+CGG - chr2.4:18334096-18334115 MS.gene059832:intron 35.0%
AGGTTCTTCACATTACTACT+AGG - chr2.4:18332862-18332881 MS.gene059832:intron 35.0%
ATACAATTCACACCCAATTC+AGG + chr2.4:18334412-18334431 None:intergenic 35.0%
ATCACTTGCACGATAAGAAA+AGG + chr2.4:18334268-18334287 None:intergenic 35.0%
ATGATATATTCACAGGCTGT+TGG - chr2.4:18333272-18333291 MS.gene059832:intron 35.0%
CAAAAAGGAAAGAGAAGTCT+AGG + chr2.4:18333463-18333482 None:intergenic 35.0%
CATAAGTTGTGAGACTGTTT+GGG + chr2.4:18333988-18334007 None:intergenic 35.0%
CATGTTATGTGGAGGTTAAA+TGG - chr2.4:18333080-18333099 MS.gene059832:intron 35.0%
CTCAAAAATAGCAAAAAGGC+TGG - chr2.4:18333410-18333429 MS.gene059832:intron 35.0%
GCTATAAAACCAACAAAGGT+AGG - chr2.4:18332586-18332605 MS.gene059832:CDS 35.0%
GGCTAACTAACACATATTGT+TGG + chr2.4:18334456-18334475 None:intergenic 35.0%
GTAATGTGAAGAACCTTAGT+AGG + chr2.4:18332858-18332877 None:intergenic 35.0%
TAACTTTAACCAGGTTGCTT+GGG + chr2.4:18333857-18333876 None:intergenic 35.0%
TAATCTGCTTAACAACGTCT+GGG + chr2.4:18334638-18334657 None:intergenic 35.0%
TAGTGGAAAGATGTTCCATA+TGG - chr2.4:18333529-18333548 MS.gene059832:intron 35.0%
TATAAAGTTAGCTGCAACAG+TGG - chr2.4:18333373-18333392 MS.gene059832:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr2.4:18334021-18334040 MS.gene059832:intron 35.0%
TGCTGCTATAAAACCAACAA+AGG - chr2.4:18332582-18332601 MS.gene059832:CDS 35.0%
TTAACTTTAACCAGGTTGCT+TGG + chr2.4:18333858-18333877 None:intergenic 35.0%
TTCAAATCTATCCCAAGTGT+TGG + chr2.4:18334577-18334596 None:intergenic 35.0%
! AATGTTTTACCTTCACCACA+AGG + chr2.4:18332894-18332913 None:intergenic 35.0%
! ATGGTTTGTGAGAATTCACA+TGG - chr2.4:18334299-18334318 MS.gene059832:intron 35.0%
! ATGTTTTACCTTCACCACAA+GGG + chr2.4:18332893-18332912 None:intergenic 35.0%
!! ATATTTCCTTGACTTGGAAC+AGG + chr2.4:18334375-18334394 None:intergenic 35.0%
!!! TGTTTTTTTGGCTTTCACAC+TGG - chr2.4:18333698-18333717 MS.gene059832:intron 35.0%
AAATAGGGCCTGTTTGGATA+AGG - chr2.4:18333573-18333592 MS.gene059832:intron 40.0%
AACCTCCACATAACATGCAA+TGG + chr2.4:18333077-18333096 None:intergenic 40.0%
AATCTGCTTAACAACGTCTG+GGG + chr2.4:18334637-18334656 None:intergenic 40.0%
AGAGAGTGATCCTAATCTTG+TGG + chr2.4:18332636-18332655 None:intergenic 40.0%
ATAGCACAAACAATTAGCCG+AGG + chr2.4:18334116-18334135 None:intergenic 40.0%
ATGCAATGGAGTAGGATTGA+AGG + chr2.4:18333063-18333082 None:intergenic 40.0%
ATTTAGACTATGGGCCTGTT+TGG + chr2.4:18334038-18334057 None:intergenic 40.0%
CAAGTGATTCTATGTGTGGA+TGG - chr2.4:18334280-18334299 MS.gene059832:intron 40.0%
CACATAACATGCAATGGAGT+AGG + chr2.4:18333071-18333090 None:intergenic 40.0%
CACGTCCAAAATCTTGAGAA+GGG - chr2.4:18332664-18332683 MS.gene059832:CDS 40.0%
CTACTCCATTGCATGTTATG+TGG - chr2.4:18333069-18333088 MS.gene059832:intron 40.0%
GAATGCTTCTTGTCTAGCAT+GGG - chr2.4:18334152-18334171 MS.gene059832:intron 40.0%
GCATAAGTTGTGAGACTGTT+TGG + chr2.4:18333989-18334008 None:intergenic 40.0%
GCTATTCTCTTCTTTGTGTG+TGG - chr2.4:18334222-18334241 MS.gene059832:intron 40.0%
GCTTATTTGAGCTTGTCTAC+TGG + chr2.4:18334011-18334030 None:intergenic 40.0%
GTAATCTGCTTAACAACGTC+TGG + chr2.4:18334639-18334658 None:intergenic 40.0%
TAGAACAAATAGGGCCTGTT+TGG - chr2.4:18333567-18333586 MS.gene059832:intron 40.0%
TATGAGCTTCCTTCTGTTTC+AGG - chr2.4:18334549-18334568 MS.gene059832:intron 40.0%
TGAATGCTTCTTGTCTAGCA+TGG - chr2.4:18334151-18334170 MS.gene059832:intron 40.0%
TGCTAAGGACAAGCATCTTA+GGG - chr2.4:18332812-18332831 MS.gene059832:intron 40.0%
! AAGATTTTGGACGTGCTTAG+AGG + chr2.4:18332659-18332678 None:intergenic 40.0%
! TGTTTCAGGTACCAACACTT+GGG - chr2.4:18334563-18334582 MS.gene059832:intron 40.0%
! TGTTTTACCTTCACCACAAG+GGG + chr2.4:18332892-18332911 None:intergenic 40.0%
!! GTTGTTAGTTTGTGCTGACT+TGG - chr2.4:18332782-18332801 MS.gene059832:intron 40.0%
AATACCAGGTTCGATTCCCA+AGG + chr2.4:18333794-18333813 None:intergenic 45.0%
ACCAACAAAGGTAGGTTTGG+AGG - chr2.4:18332594-18332613 MS.gene059832:CDS 45.0%
AGGAGCAGATCCACAAGATT+AGG - chr2.4:18332623-18332642 MS.gene059832:CDS 45.0%
ATACCAGGTTCGATTCCCAA+GGG + chr2.4:18333793-18333812 None:intergenic 45.0%
ATTTCCCATGCCACCTGAAT+TGG - chr2.4:18334396-18334415 MS.gene059832:CDS 45.0%
CAATTCACACCCAATTCAGG+TGG + chr2.4:18334409-18334428 None:intergenic 45.0%
CGTGCAAGTGATTCTATGTG+TGG - chr2.4:18334276-18334295 MS.gene059832:intron 45.0%
CTCCATTGCATGTTATGTGG+AGG - chr2.4:18333072-18333091 MS.gene059832:intron 45.0%
GACAAGCATCTTAGGGTCAA+GGG - chr2.4:18332819-18332838 MS.gene059832:intron 45.0%
GAGTAGGATTGAAGGACAAG+CGG + chr2.4:18333055-18333074 None:intergenic 45.0%
GCACGTCCAAAATCTTGAGA+AGG - chr2.4:18332663-18332682 MS.gene059832:CDS 45.0%
GTGCTAAGGACAAGCATCTT+AGG - chr2.4:18332811-18332830 MS.gene059832:intron 45.0%
TCCTCCAAACCTACCTTTGT+TGG + chr2.4:18332598-18332617 None:intergenic 45.0%
TCTGATCCTGTTCCAAGTCA+AGG - chr2.4:18334366-18334385 MS.gene059832:intron 45.0%
TTTCCCATGCCACCTGAATT+GGG - chr2.4:18334397-18334416 MS.gene059832:CDS 45.0%
! ACGCACCCTTCTCAAGATTT+TGG + chr2.4:18332672-18332691 None:intergenic 45.0%
! CTGTTTCAGGTACCAACACT+TGG - chr2.4:18334562-18334581 MS.gene059832:intron 45.0%
! GTGTTGGTACCTGAAACAGA+AGG + chr2.4:18334561-18334580 None:intergenic 45.0%
!! GTCTAGCATGGGTTGGAAAT+TGG - chr2.4:18334163-18334182 MS.gene059832:intron 45.0%
ACACCCAATTCAGGTGGCAT+GGG + chr2.4:18334403-18334422 None:intergenic 50.0%
ACCAGGTTCGATGGTGATAG+AGG + chr2.4:18334661-18334680 None:intergenic 50.0%
ACCTCTATCACCATCGAACC+TGG - chr2.4:18334657-18334676 MS.gene059832:CDS 50.0%
ACCTGTCAGGATGCCTACTA+AGG - chr2.4:18332842-18332861 MS.gene059832:intron 50.0%
ACCTTAGTAGGCATCCTGAC+AGG + chr2.4:18332846-18332865 None:intergenic 50.0%
ACTACTAGGAAGACCCCTTG+TGG - chr2.4:18332876-18332895 MS.gene059832:intron 50.0%
ATTAGTCGCCCACCTTTGGT+GGG + chr2.4:18333731-18333750 None:intergenic 50.0%
CAACGTCTGGGGAACTGTAA+AGG + chr2.4:18334626-18334645 None:intergenic 50.0%
CAATGACCCTCTTGTGCACA+CGG + chr2.4:18334602-18334621 None:intergenic 50.0%
GAATCGAACCTGGTATTCCC+CGG - chr2.4:18333797-18333816 MS.gene059832:intron 50.0%
GACTATGGGCCTGTTTGGAT+TGG + chr2.4:18334033-18334052 None:intergenic 50.0%
GCTTCTTGTCTAGCATGGGT+TGG - chr2.4:18334156-18334175 MS.gene059832:intron 50.0%
GGACAAGCATCTTAGGGTCA+AGG - chr2.4:18332818-18332837 MS.gene059832:intron 50.0%
GGTAGGTTTGGAGGATTCTC+AGG - chr2.4:18332603-18332622 MS.gene059832:CDS 50.0%
TACCAGGTTCGATTCCCAAG+GGG + chr2.4:18333792-18333811 None:intergenic 50.0%
TCTACAAGCACGGCACCATA+TGG + chr2.4:18333547-18333566 None:intergenic 50.0%
TGAACTCCGTGTGCACAAGA+GGG - chr2.4:18334593-18334612 MS.gene059832:intron 50.0%
TTGAACTCCGTGTGCACAAG+AGG - chr2.4:18334592-18334611 MS.gene059832:intron 50.0%
!! GTTTGTGCTGACTTGGTTCG+TGG - chr2.4:18332789-18332808 MS.gene059832:intron 50.0%
!! TGACTTGGTTCGTGGTGCTA+AGG - chr2.4:18332797-18332816 MS.gene059832:intron 50.0%
AACCTCGACACCAGGTTCGA+TGG + chr2.4:18334670-18334689 None:intergenic 55.0%
ACTGGATTCCGACCCACCAA+AGG - chr2.4:18333716-18333735 MS.gene059832:intron 55.0%
AGGAAGACCCCTTGTGGTGA+AGG - chr2.4:18332882-18332901 MS.gene059832:intron 55.0%
CACACCCAATTCAGGTGGCA+TGG + chr2.4:18334404-18334423 None:intergenic 55.0%
CCAAAGGTGGGCGACTAATC+TGG - chr2.4:18333732-18333751 MS.gene059832:intron 55.0%
CTCCTTCCAAGGACGTATCC+GGG + chr2.4:18333818-18333837 None:intergenic 55.0%
GATTCCGACCCACCAAAGGT+GGG - chr2.4:18333720-18333739 MS.gene059832:intron 55.0%
GCTCCTTCCAAGGACGTATC+CGG + chr2.4:18333819-18333838 None:intergenic 55.0%
GTATTCCCCGGATACGTCCT+TGG - chr2.4:18333809-18333828 MS.gene059832:intron 55.0%
TCCTTCCAAGGACGTATCCG+GGG + chr2.4:18333817-18333836 None:intergenic 55.0%
TTAGGGTCAAGGGACCTGTC+AGG - chr2.4:18332829-18332848 MS.gene059832:intron 55.0%
TTCCCCTTGGGAATCGAACC+TGG - chr2.4:18333787-18333806 MS.gene059832:intron 55.0%
! CCAGATTAGTCGCCCACCTT+TGG + chr2.4:18333735-18333754 None:intergenic 55.0%
! CTAATCTGGCTCGTGCGTAG+AGG - chr2.4:18333746-18333765 MS.gene059832:intron 55.0%
! GATTAGTCGCCCACCTTTGG+TGG + chr2.4:18333732-18333751 None:intergenic 55.0%
CACTGCCAAGCGTTCCCCTT+GGG - chr2.4:18333775-18333794 MS.gene059832:intron 60.0%
CGATTCCCAAGGGGAACGCT+TGG + chr2.4:18333783-18333802 None:intergenic 60.0%
GGACGTATCCGGGGAATACC+AGG + chr2.4:18333808-18333827 None:intergenic 60.0%
GGATTCCGACCCACCAAAGG+TGG - chr2.4:18333719-18333738 MS.gene059832:intron 60.0%
GTCACCTCAACCTCGACACC+AGG + chr2.4:18334678-18334697 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG + chr2.4:18333829-18333848 None:intergenic 60.0%
TCCCCGGATACGTCCTTGGA+AGG - chr2.4:18333813-18333832 MS.gene059832:intron 60.0%
TGGAAGGAGCTCCTTGCCAC+TGG - chr2.4:18333829-18333848 MS.gene059832:intron 60.0%
TTGCTTGGGCTCCAGTGGCA+AGG + chr2.4:18333843-18333862 None:intergenic 60.0%
! CACCATCGAACCTGGTGTCG+AGG - chr2.4:18334665-18334684 MS.gene059832:CDS 60.0%
! CGAACCTGGTGTCGAGGTTG+AGG - chr2.4:18334671-18334690 MS.gene059832:CDS 60.0%
CCACTGGAGCCCAAGCAACC+TGG - chr2.4:18333845-18333864 MS.gene059832:intron 65.0%
CCAGGTTGCTTGGGCTCCAG+TGG + chr2.4:18333848-18333867 None:intergenic 65.0%
GCACTGCCAAGCGTTCCCCT+TGG - chr2.4:18333774-18333793 MS.gene059832:intron 65.0%
! GTCGCCCACCTTTGGTGGGT+CGG + chr2.4:18333727-18333746 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 18332571 18334713 18332571 ID=MS.gene059832
chr2.4 mRNA 18332571 18334713 18332571 ID=MS.gene059832.t1;Parent=MS.gene059832
chr2.4 exon 18334599 18334713 18334599 ID=MS.gene059832.t1.exon1;Parent=MS.gene059832.t1
chr2.4 CDS 18334599 18334713 18334599 ID=cds.MS.gene059832.t1;Parent=MS.gene059832.t1
chr2.4 exon 18334381 18334494 18334381 ID=MS.gene059832.t1.exon2;Parent=MS.gene059832.t1
chr2.4 CDS 18334381 18334494 18334381 ID=cds.MS.gene059832.t1;Parent=MS.gene059832.t1
chr2.4 exon 18332571 18332713 18332571 ID=MS.gene059832.t1.exon3;Parent=MS.gene059832.t1
chr2.4 CDS 18332571 18332713 18332571 ID=cds.MS.gene059832.t1;Parent=MS.gene059832.t1
Gene Sequence

>MS.gene059832

ATGGCGACTTATGCTGCTATAAAACCAACAAAGGTAGGTTTGGAGGATTCTCAGGAGCAGATCCACAAGATTAGGATCACTCTCTCCTCTAAGCACGTCCAAAATCTTGAGAAGGGTGCGTATTTTATACTATTTGCTCAGTTAAAGTTCATGTCTTTATGTTTGTTGCTATCACTAAATATGCTTATTTTTGGATTTTTATTGCTTTGTTGTTGTTAGTTTGTGCTGACTTGGTTCGTGGTGCTAAGGACAAGCATCTTAGGGTCAAGGGACCTGTCAGGATGCCTACTAAGGTTCTTCACATTACTACTAGGAAGACCCCTTGTGGTGAAGGTAAAACATTTATTTACTTTTGCTCTATAATTAAAATTTGTTTTTATTGTGTGGTTAGCTTGTTCCTTTTGTGTTCTGCTTCTTTTTCTGTTCACGTTGCAATTACTTTGCATGCTGTATGCACTTTCCTGATTTTAATTGTGTTTTTCCGCTTGTCCTTCAATCCTACTCCATTGCATGTTATGTGGAGGTTAAATGGTTTCACAAAATTCATGGTGATTTAATGACAGTAGTGATAGGAGCGAATTCGTGATAATGTAATGAAAGTAGTAATAGGCAACAAAATGATAATTATCCTAGTGAGCTATTGAAAGAGTTTTTATGGATTTAATGATTTATAGGGTTACACTTAATTATACACATAATTTATGATATATTCACAGGCTGTTGGCACTTATAATTGAGTGTGTAATAATAATCATATAGTTAAGTTGCATATCCAAATGCTTCTAGAGATGATTTTTGCTTATATAAAGTTAGCTGCAACAGTGGATTATGTGAATTTTCTCAAAAATAGCAAAAAGGCTGGTCCTGTCTAGTTGTATTTTTCAGTGATCCTAGACTTCTCTTTCCTTTTTGTGTTTTGCAAGTCTATCATTATATTGCTCTTCTATCTCTTCAGTTTTAGTGGAAAGATGTTCCATATGGTGCCGTGCTTGTAGATAGAACAAATAGGGCCTGTTTGGATAAGGATCTTATTTGCAGCTTATAGCACAAGCGCTTATCGTGATAATCGCTTATGTATAAGTTTCCATCAACTATTTTTATAGTAAATGATAACATAAAAGTTAAACTGTTTTTTTGGCTTTCACACTGGATTCCGACCCACCAAAGGTGGGCGACTAATCTGGCTCGTGCGTAGAGGCATGCGCACTGCCAAGCGTTCCCCTTGGGAATCGAACCTGGTATTCCCCGGATACGTCCTTGGAAGGAGCTCCTTGCCACTGGAGCCCAAGCAACCTGGTTAAAGTTAAACTGTTTTTGTATATACTATAAGTTGTTTTCATGAACTATCTTGGAGAACTTATAAAAATAAGCTGAAAAAAGCTTATTAAAATGTCAAACTATTTATAAAAGTTCTCCCAAACAGTCTCACAACTTATGCCAGTAGACAAGCTCAAATAAGCCAATCCAAACAGGCCCATAGTCTAAATTTTTATCTCATTTTTTTGAATGGTATTTGCTATTTGGCACTTGAATCTGAATCTTCCTCGGCTAATTGTTTGTGCTATAAAGTGACTGTTTTATGAATGCTTCTTGTCTAGCATGGGTTGGAAATTGGAATTCATTCATGCTTTGTGTAGTTATTTATATCATGGCTATTCTCTTCTTTGTGTGTGGTTTGAATGCGTTATATATTTCCTTTTCTTATCGTGCAAGTGATTCTATGTGTGGATGGTTTGTGAGAATTCACATGGCCCAAGCCCCAAAATATAATTCATAATCTTGAAAAGTGTAGTTTTCTGATCCTGTTCCAAGTCAAGGAAATATAATTTCCCATGCCACCTGAATTGGGTGTGAATTGTATGCTGCTAATGTTTCTTATTAACCAACAATATGTGTTAGTTAGCCTTCTGACTTGATTTTTGAAGTATTGTGTTCAATGTGTAGGCTTTCTGAATGAACGTTATGAACTGCTTGTGTTTATGAGCTTCCTTCTGTTTCAGGTACCAACACTTGGGATAGATTTGAACTCCGTGTGCACAAGAGGGTCATTGACCTTTACAGTTCCCCAGACGTTGTTAAGCAGATTACCTCTATCACCATCGAACCTGGTGTCGAGGTTGAGGTGACCATTGCTGACGCTTGA
Protein sequence

>MS.gene059832.t1

MATYAAIKPTKVGLEDSQEQIHKIRITLSSKHVQNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA