Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77739.t1 | XP_003605577.1 | 100 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.40E-61 | 245.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77739.t1 | Q9STY6 | 88.5 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 4.9e-55 | 214.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77739.t1 | G7JPA9 | 100.0 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 1.0e-61 | 245.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049441 | MS.gene77739 | 0.806466 | 8.11E-50 | -1.69E-46 |
MS.gene051791 | MS.gene77739 | 0.819162 | 1.34E-52 | -1.69E-46 |
MS.gene053122 | MS.gene77739 | 0.839312 | 1.71E-57 | -1.69E-46 |
MS.gene055580 | MS.gene77739 | -0.804142 | 2.49E-49 | -1.69E-46 |
MS.gene060429 | MS.gene77739 | 0.828354 | 9.42E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene72479 | MS.gene77739 | PPI |
MS.gene031439 | MS.gene77739 | PPI |
MS.gene059832 | MS.gene77739 | PPI |
MS.gene068750 | MS.gene77739 | PPI |
MS.gene045681 | MS.gene77739 | PPI |
MS.gene77739 | MS.gene059832 | PPI |
MS.gene04591 | MS.gene77739 | PPI |
MS.gene072375 | MS.gene77739 | PPI |
MS.gene77739 | MS.gene78060 | PPI |
MS.gene017955 | MS.gene77739 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77739.t1 | MTR_0157s0070 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 4.56e-88 | 251 |
MS.gene77739.t1 | MTR_4g034030 | 100.000 | 122 | 0 | 0 | 1 | 122 | 1 | 122 | 4.56e-88 | 251 |
MS.gene77739.t1 | MTR_7g092720 | 98.361 | 122 | 2 | 0 | 1 | 122 | 1 | 122 | 7.09e-87 | 248 |
MS.gene77739.t1 | MTR_2g085090 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 6.20e-84 | 241 |
MS.gene77739.t1 | MTR_1g091057 | 97.500 | 120 | 3 | 0 | 3 | 122 | 4 | 123 | 6.20e-84 | 241 |
MS.gene77739.t1 | MTR_4g034030 | 100.000 | 85 | 0 | 0 | 38 | 122 | 3 | 87 | 1.15e-58 | 176 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77739.t1 | AT3G47370 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 2.90e-76 | 221 |
MS.gene77739.t1 | AT3G47370 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 2.90e-76 | 221 |
MS.gene77739.t1 | AT3G47370 | 88.525 | 122 | 14 | 0 | 1 | 122 | 1 | 122 | 2.90e-76 | 221 |
MS.gene77739.t1 | AT5G62300 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.75e-75 | 219 |
MS.gene77739.t1 | AT5G62300 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.75e-75 | 219 |
MS.gene77739.t1 | AT3G45030 | 88.430 | 121 | 14 | 0 | 2 | 122 | 4 | 124 | 2.75e-75 | 219 |
Find 31 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCTAAGGATAAGCATCTT+AGG | 0.267467 | 4.4:-68859585 | MS.gene77739:CDS |
AGAGAGTGATCCTAATCTTA+TGG | 0.362238 | 4.4:+68859773 | None:intergenic |
GCCTGGTTTGGAAGAATCTC+AGG | 0.435840 | 4.4:-68859803 | MS.gene77739:CDS |
GAAACCCACTAAGCCTGGTT+TGG | 0.441208 | 4.4:-68859815 | MS.gene77739:CDS |
TTCTTCCAAACCAGGCTTAG+TGG | 0.453985 | 4.4:+68859810 | None:intergenic |
AGGAACAGATCCATAAGATT+AGG | 0.460004 | 4.4:-68859783 | MS.gene77739:CDS |
ACATGTTCAGAATCTTGAAA+AGG | 0.466965 | 4.4:-68859743 | MS.gene77739:CDS |
GTAATCTGCTTGACAACATC+AGG | 0.478418 | 4.4:+68857953 | None:intergenic |
CATGTTCAGAATCTTGAAAA+GGG | 0.486597 | 4.4:-68859742 | MS.gene77739:intron |
TCCTGAGATTCTTCCAAACC+AGG | 0.490218 | 4.4:+68859802 | None:intergenic |
GGTAACCTCAACTTCGACAC+CGG | 0.491925 | 4.4:+68857913 | None:intergenic |
AGGAAAACCCCTTGTGGAGA+AGG | 0.505939 | 4.4:-68859514 | MS.gene77739:intron |
GCAATGAAACCCACTAAGCC+TGG | 0.522658 | 4.4:-68859820 | MS.gene77739:CDS |
TGCTAAGGATAAGCATCTTA+GGG | 0.525206 | 4.4:-68859584 | MS.gene77739:CDS |
TCTTCCAAACCAGGCTTAGT+GGG | 0.526450 | 4.4:+68859811 | None:intergenic |
TATGGTAGTTTGTAGTGACT+TGG | 0.528686 | 4.4:-68859614 | MS.gene77739:intron |
TGACTTGGTTCGTGGTGCTA+AGG | 0.539891 | 4.4:-68859599 | MS.gene77739:CDS |
GGATAAGCATCTTAGGGTGA+AGG | 0.543022 | 4.4:-68859578 | MS.gene77739:CDS |
GTTTGTAGTGACTTGGTTCG+TGG | 0.553261 | 4.4:-68859607 | MS.gene77739:CDS |
TGAACCCGGTGTCGAAGTTG+AGG | 0.555520 | 4.4:-68857918 | MS.gene77739:CDS |
TGATAATCAAGCATCTGCAA+TGG | 0.568022 | 4.4:+68857892 | None:intergenic |
AAAATTACCTTCTCCACAAG+GGG | 0.574438 | 4.4:+68859507 | None:intergenic |
GATAAGCATCTTAGGGTGAA+GGG | 0.583411 | 4.4:-68859577 | MS.gene77739:CDS |
CAACATCAGGTGAACTGTAG+AGG | 0.586753 | 4.4:+68857966 | None:intergenic |
GTAACCTCAACTTCGACACC+GGG | 0.590799 | 4.4:+68857914 | None:intergenic |
ATGGTTAAGGTACAAACACA+TGG | 0.600096 | 4.4:-68858027 | MS.gene77739:intron |
AAGTGCTTCACATTACCACT+AGG | 0.639472 | 4.4:-68859534 | MS.gene77739:CDS |
ACCACTAGGAAAACCCCTTG+TGG | 0.655241 | 4.4:-68859520 | MS.gene77739:CDS |
ACATCGATCACAATTGAACC+CGG | 0.686873 | 4.4:-68857932 | MS.gene77739:CDS |
TGGTTAAGGTACAAACACAT+GGG | 0.706931 | 4.4:-68858026 | MS.gene77739:intron |
TTAGGGTGAAGGGACCAGTG+AGG | 0.764206 | 4.4:-68859567 | MS.gene77739:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAAGACAATCAAAA+CGG | + | chr4.4:68858999-68859018 | None:intergenic | 15.0% |
!! | TTAAATTACATAAGCTATTT+GGG | - | chr4.4:68859266-68859285 | MS.gene77739:intron | 15.0% |
!!! | AAGGTAATTTTTATTTCATT+TGG | - | chr4.4:68858235-68858254 | MS.gene77739:intron | 15.0% |
!!! | TTTAGAATAATATTATGTCA+TGG | + | chr4.4:68859442-68859461 | None:intergenic | 15.0% |
!!! | TTTTATATGTGCTTTTTAAT+TGG | - | chr4.4:68858258-68858277 | MS.gene77739:intron | 15.0% |
!!! | TTTTTGTTTTGTTTTTGTTA+TGG | - | chr4.4:68858098-68858117 | MS.gene77739:intron | 15.0% |
!! | AGTAATTATAACATAAACAC+TGG | + | chr4.4:68858735-68858754 | None:intergenic | 20.0% |
!! | CTTAAATTACATAAGCTATT+TGG | - | chr4.4:68859265-68859284 | MS.gene77739:intron | 20.0% |
!! | TATTATTCATAAGTTTGTCA+AGG | + | chr4.4:68859125-68859144 | None:intergenic | 20.0% |
!!! | ACATTTTTCAAATAAACACT+AGG | + | chr4.4:68859216-68859235 | None:intergenic | 20.0% |
!!! | AGATATTAAGTTTGGTATTT+TGG | - | chr4.4:68858543-68858562 | MS.gene77739:intron | 20.0% |
!!! | ATAATCTGCTTTTATTACAA+TGG | - | chr4.4:68859522-68859541 | MS.gene77739:CDS | 20.0% |
!!! | ATTTTTCAAATAAACACTAG+GGG | + | chr4.4:68859214-68859233 | None:intergenic | 20.0% |
!!! | CATTTTTCAAATAAACACTA+GGG | + | chr4.4:68859215-68859234 | None:intergenic | 20.0% |
!!! | GATATTAAGTTTGGTATTTT+GGG | - | chr4.4:68858544-68858563 | MS.gene77739:intron | 20.0% |
!!! | TGTTTTGAAAATTATGAGTT+TGG | - | chr4.4:68858697-68858716 | MS.gene77739:intron | 20.0% |
! | TAATTATGTTACGATCATAG+TGG | - | chr4.4:68858480-68858499 | MS.gene77739:intron | 25.0% |
! | TATAATGACATGTGTATCAT+TGG | - | chr4.4:68858665-68858684 | MS.gene77739:intron | 25.0% |
! | TTTGAAAATTATGAGTTTGG+TGG | - | chr4.4:68858700-68858719 | MS.gene77739:intron | 25.0% |
!! | TTAGTGTATGTTTGTTTCTT+TGG | - | chr4.4:68858773-68858792 | MS.gene77739:intron | 25.0% |
!!! | AGCACTTCTGAAATAAAATT+TGG | + | chr4.4:68859247-68859266 | None:intergenic | 25.0% |
AAAAATTACCTTCTCCACAA+GGG | + | chr4.4:68858227-68858246 | None:intergenic | 30.0% | |
AAAATACCCGAATTAGTTCA+TGG | + | chr4.4:68859562-68859581 | None:intergenic | 30.0% | |
ACATGACATCGAAAATTACA+AGG | - | chr4.4:68858641-68858660 | MS.gene77739:intron | 30.0% | |
ACATGTTCAGAATCTTGAAA+AGG | - | chr4.4:68857987-68858006 | MS.gene77739:CDS | 30.0% | |
ATTAAGAACTGCATCTAGAA+AGG | + | chr4.4:68859484-68859503 | None:intergenic | 30.0% | |
CATGTTCAGAATCTTGAAAA+GGG | - | chr4.4:68857988-68858007 | MS.gene77739:CDS | 30.0% | |
GAAACAAACATACACTAAGA+CGG | + | chr4.4:68858771-68858790 | None:intergenic | 30.0% | |
GACAGTCTAGATATTAAGTT+TGG | - | chr4.4:68858535-68858554 | MS.gene77739:intron | 30.0% | |
TAAAAATTACCTTCTCCACA+AGG | + | chr4.4:68858228-68858247 | None:intergenic | 30.0% | |
TAAAGTAGAATTTGGGAAGA+GGG | - | chr4.4:68859324-68859343 | MS.gene77739:intron | 30.0% | |
TCATGTCATGAAAATAGTTG+CGG | + | chr4.4:68859622-68859641 | None:intergenic | 30.0% | |
TGAAACAGATTGTCAATACA+AGG | + | chr4.4:68859684-68859703 | None:intergenic | 30.0% | |
TTAAGAACTGCATCTAGAAA+GGG | + | chr4.4:68859483-68859502 | None:intergenic | 30.0% | |
! | TGTATTGACAATCTGTTTCA+TGG | - | chr4.4:68859684-68859703 | MS.gene77739:intron | 30.0% |
!! | TGCACTCTAAAGTAGAATTT+GGG | - | chr4.4:68859317-68859336 | MS.gene77739:intron | 30.0% |
!! | TTGCACTCTAAAGTAGAATT+TGG | - | chr4.4:68859316-68859335 | MS.gene77739:intron | 30.0% |
AAAATTACCTTCTCCACAAG+GGG | + | chr4.4:68858226-68858245 | None:intergenic | 35.0% | |
AGAGAGTGATCCTAATCTTA+TGG | + | chr4.4:68857960-68857979 | None:intergenic | 35.0% | |
AGGAACAGATCCATAAGATT+AGG | - | chr4.4:68857947-68857966 | MS.gene77739:CDS | 35.0% | |
ATCAGCTCCATGAACTAATT+CGG | - | chr4.4:68859552-68859571 | MS.gene77739:CDS | 35.0% | |
ATGGTTAAGGTACAAACACA+TGG | - | chr4.4:68859703-68859722 | MS.gene77739:intron | 35.0% | |
CATGTCATGAAAATAGTTGC+GGG | + | chr4.4:68859621-68859640 | None:intergenic | 35.0% | |
CTAAAGTAGAATTTGGGAAG+AGG | - | chr4.4:68859323-68859342 | MS.gene77739:intron | 35.0% | |
GACAATCTGTTTCATGGTTA+AGG | - | chr4.4:68859690-68859709 | MS.gene77739:intron | 35.0% | |
TACTTAGAAATTGCGTGGAT+TGG | - | chr4.4:68858935-68858954 | MS.gene77739:intron | 35.0% | |
TGCTAAGGATAAGCATCTTA+GGG | - | chr4.4:68858146-68858165 | MS.gene77739:intron | 35.0% | |
TGGTTAAGGTACAAACACAT+GGG | - | chr4.4:68859704-68859723 | MS.gene77739:intron | 35.0% | |
TGTTAGTGTCATGTTTGAGT+CGG | - | chr4.4:68858872-68858891 | MS.gene77739:intron | 35.0% | |
TGTTCTAACACATGATATCG+AGG | + | chr4.4:68858386-68858405 | None:intergenic | 35.0% | |
! | CGCAATATCATTTGAAGTCT+TGG | - | chr4.4:68858961-68858980 | MS.gene77739:intron | 35.0% |
! | TATGGTAGTTTGTAGTGACT+TGG | - | chr4.4:68858116-68858135 | MS.gene77739:intron | 35.0% |
!! | GTAATGTGAAGCACTTTTGT+TGG | + | chr4.4:68858192-68858211 | None:intergenic | 35.0% |
!! | TAGAAAGGGAGTGTTTCAAA+TGG | + | chr4.4:68859469-68859488 | None:intergenic | 35.0% |
AAGTGCTTCACATTACCACT+AGG | - | chr4.4:68858196-68858215 | MS.gene77739:intron | 40.0% | |
ACATCGATCACAATTGAACC+CGG | - | chr4.4:68859798-68859817 | MS.gene77739:CDS | 40.0% | |
ATAAACACTAGGGGTCTGTT+TGG | + | chr4.4:68859205-68859224 | None:intergenic | 40.0% | |
ATCAACGCATTAGTACCCAT+TGG | + | chr4.4:68858611-68858630 | None:intergenic | 40.0% | |
GAAAATAGTTGCGGGCATTT+GGG | + | chr4.4:68859613-68859632 | None:intergenic | 40.0% | |
GATAAGCATCTTAGGGTGAA+GGG | - | chr4.4:68858153-68858172 | MS.gene77739:intron | 40.0% | |
GCATTAGTACCCATTGGATT+CGG | + | chr4.4:68858605-68858624 | None:intergenic | 40.0% | |
GTAATCTGCTTGACAACATC+AGG | + | chr4.4:68859780-68859799 | None:intergenic | 40.0% | |
GTGCTAAGGATAAGCATCTT+AGG | - | chr4.4:68858145-68858164 | MS.gene77739:intron | 40.0% | |
TCAGCTCCATGAACTAATTC+GGG | - | chr4.4:68859553-68859572 | MS.gene77739:CDS | 40.0% | |
TGAAAATAGTTGCGGGCATT+TGG | + | chr4.4:68859614-68859633 | None:intergenic | 40.0% | |
! | AGAATTTGGGAAGAGGGTAT+TGG | - | chr4.4:68859330-68859349 | MS.gene77739:intron | 40.0% |
! | GAGTGTCTGAAACAATGTGT+TGG | + | chr4.4:68858901-68858920 | None:intergenic | 40.0% |
!! | AGTGCTACTTAGAAATTGCG+TGG | - | chr4.4:68858930-68858949 | MS.gene77739:intron | 40.0% |
!! | GAATTTGGGAAGAGGGTATT+GGG | - | chr4.4:68859331-68859350 | MS.gene77739:intron | 40.0% |
ACTGTCCAATCCGAATCCAA+TGG | - | chr4.4:68858592-68858611 | MS.gene77739:intron | 45.0% | |
AGTACCCATTGGATTCGGAT+TGG | + | chr4.4:68858600-68858619 | None:intergenic | 45.0% | |
CAACATCAGGTGAACTGTAG+AGG | + | chr4.4:68859767-68859786 | None:intergenic | 45.0% | |
CTGTCCAATCCGAATCCAAT+GGG | - | chr4.4:68858593-68858612 | MS.gene77739:intron | 45.0% | |
GATCATAGTGGTCAGCACAT+TGG | - | chr4.4:68858492-68858511 | MS.gene77739:intron | 45.0% | |
GGATAAGCATCTTAGGGTGA+AGG | - | chr4.4:68858152-68858171 | MS.gene77739:intron | 45.0% | |
GTGTTGTCAGACACTAGTGT+CGG | + | chr4.4:68858439-68858458 | None:intergenic | 45.0% | |
TCCTGAGATTCTTCCAAACC+AGG | + | chr4.4:68857931-68857950 | None:intergenic | 45.0% | |
TCTTCCAAACCAGGCTTAGT+GGG | + | chr4.4:68857922-68857941 | None:intergenic | 45.0% | |
TGTTGTCAGACACTAGTGTC+GGG | + | chr4.4:68858438-68858457 | None:intergenic | 45.0% | |
TTCTTCCAAACCAGGCTTAG+TGG | + | chr4.4:68857923-68857942 | None:intergenic | 45.0% | |
! | ACTTTTGTTGGCATCCTCAC+TGG | + | chr4.4:68858180-68858199 | None:intergenic | 45.0% |
! | TCAGCACATTGGTGACTGTT+GGG | - | chr4.4:68858503-68858522 | MS.gene77739:intron | 45.0% |
! | TCATGTCAGTGTTGAACGTG+TGG | + | chr4.4:68858813-68858832 | None:intergenic | 45.0% |
!! | GTTTGTAGTGACTTGGTTCG+TGG | - | chr4.4:68858123-68858142 | MS.gene77739:intron | 45.0% |
!!! | TTTTTTATGTTTTTTTTATT+AGG | - | chr4.4:68858031-68858050 | MS.gene77739:intron | 5.0% |
ACCACTAGGAAAACCCCTTG+TGG | - | chr4.4:68858210-68858229 | MS.gene77739:intron | 50.0% | |
AGGAAAACCCCTTGTGGAGA+AGG | - | chr4.4:68858216-68858235 | MS.gene77739:intron | 50.0% | |
CACTAGGGGTCTGTTTGGAT+TGG | + | chr4.4:68859200-68859219 | None:intergenic | 50.0% | |
GAAACCCACTAAGCCTGGTT+TGG | - | chr4.4:68857915-68857934 | MS.gene77739:CDS | 50.0% | |
GCAATGAAACCCACTAAGCC+TGG | - | chr4.4:68857910-68857929 | MS.gene77739:CDS | 50.0% | |
GGTAACCTCAACTTCGACAC+CGG | + | chr4.4:68859820-68859839 | None:intergenic | 50.0% | |
GTAACCTCAACTTCGACACC+GGG | + | chr4.4:68859819-68859838 | None:intergenic | 50.0% | |
! | GTCAGCACATTGGTGACTGT+TGG | - | chr4.4:68858502-68858521 | MS.gene77739:intron | 50.0% |
! | TCCACAAGGGGTTTTCCTAG+TGG | + | chr4.4:68858214-68858233 | None:intergenic | 50.0% |
! | TGTCAGTGTTGAACGTGTGG+TGG | + | chr4.4:68858810-68858829 | None:intergenic | 50.0% |
!! | GCCTGGTTTGGAAGAATCTC+AGG | - | chr4.4:68857927-68857946 | MS.gene77739:CDS | 50.0% |
!! | TGACTTGGTTCGTGGTGCTA+AGG | - | chr4.4:68858131-68858150 | MS.gene77739:intron | 50.0% |
CACTAAGACGGACACACGCA+AGG | + | chr4.4:68858759-68858778 | None:intergenic | 55.0% | |
TTAGGGTGAAGGGACCAGTG+AGG | - | chr4.4:68858163-68858182 | MS.gene77739:intron | 55.0% | |
! | TGAACCCGGTGTCGAAGTTG+AGG | - | chr4.4:68859812-68859831 | MS.gene77739:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 68857898 | 68859854 | 68857898 | ID=MS.gene77739 |
chr4.4 | mRNA | 68857898 | 68859854 | 68857898 | ID=MS.gene77739.t1;Parent=MS.gene77739 |
chr4.4 | exon | 68859743 | 68859854 | 68859743 | ID=MS.gene77739.t1.exon1;Parent=MS.gene77739.t1 |
chr4.4 | CDS | 68859743 | 68859854 | 68859743 | ID=cds.MS.gene77739.t1;Parent=MS.gene77739.t1 |
chr4.4 | exon | 68859515 | 68859628 | 68859515 | ID=MS.gene77739.t1.exon2;Parent=MS.gene77739.t1 |
chr4.4 | CDS | 68859515 | 68859628 | 68859515 | ID=cds.MS.gene77739.t1;Parent=MS.gene77739.t1 |
chr4.4 | exon | 68857898 | 68858040 | 68857898 | ID=MS.gene77739.t1.exon3;Parent=MS.gene77739.t1 |
chr4.4 | CDS | 68857898 | 68858040 | 68857898 | ID=cds.MS.gene77739.t1;Parent=MS.gene77739.t1 |
Gene Sequence |
Protein sequence |