AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032497

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032497.t1 MTR_7g023350 99.206 252 2 0 1 252 1 252 1.36e-178 491
MS.gene032497.t1 MTR_1g115405 85.714 252 36 0 1 252 1 252 2.35e-155 432
MS.gene032497.t1 MTR_4g063090 78.175 252 55 0 1 252 1 252 1.60e-133 377
MS.gene032497.t1 MTR_7g103030 69.841 252 74 2 1 252 1 250 1.53e-109 316
MS.gene032497.t1 MTR_1g077540 53.876 258 113 1 1 252 1 258 1.67e-98 288
MS.gene032497.t1 MTR_2g101370 60.729 247 95 2 6 252 5 249 2.95e-95 280
MS.gene032497.t1 MTR_8g013680 59.514 247 98 2 6 252 4 248 6.77e-94 276
MS.gene032497.t1 MTR_6g069040 56.471 255 108 1 1 252 1 255 1.94e-93 275
MS.gene032497.t1 MTR_1g006490 51.822 247 114 3 5 251 3 244 4.15e-81 244
MS.gene032497.t1 MTR_5g012810 54.435 248 110 2 5 252 3 247 3.01e-78 236
MS.gene032497.t1 MTR_1g006590 51.029 243 114 3 5 247 3 240 5.95e-77 233
MS.gene032497.t1 MTR_2g060360 40.167 239 136 2 13 251 11 242 1.22e-57 184
MS.gene032497.t1 MTR_2g094270 39.583 240 120 7 21 240 40 274 2.11e-39 138
MS.gene032497.t1 MTR_7g101190 39.331 239 127 7 13 235 31 267 3.04e-36 130
MS.gene032497.t1 MTR_3g118010 37.555 229 129 5 21 238 37 262 2.25e-35 127
MS.gene032497.t1 MTR_4g059390 36.820 239 127 7 21 240 39 272 4.58e-32 119
MS.gene032497.t1 MTR_5g010150 35.656 244 137 7 10 239 41 278 6.70e-32 119
MS.gene032497.t1 MTR_8g098375 35.124 242 141 6 10 239 41 278 8.18e-32 118
MS.gene032497.t1 MTR_1g095070 41.436 181 94 4 69 238 25 204 3.70e-30 112
MS.gene032497.t1 MTR_5g063930 34.874 238 138 6 17 248 33 259 6.68e-30 112
MS.gene032497.t1 MTR_4g415300 37.021 235 123 8 21 239 56 281 1.31e-29 112
MS.gene032497.t1 MTR_5g082070 34.568 243 132 7 10 234 44 277 4.38e-28 108
MS.gene032497.t1 MTR_3g070210 33.195 241 138 6 10 234 44 277 5.80e-28 108
MS.gene032497.t1 MTR_2g094270 37.864 206 106 6 21 209 40 240 1.48e-27 107
MS.gene032497.t1 MTR_4g084880 33.333 246 156 3 9 251 20 260 7.13e-26 102
MS.gene032497.t1 MTR_3g008920 32.479 234 141 4 20 250 25 244 9.51e-23 94.0
MS.gene032497.t1 MTR_1g097840 33.333 228 132 7 25 246 78 291 2.32e-22 93.6
MS.gene032497.t1 MTR_5g079570 33.333 219 132 3 20 235 39 246 2.50e-22 93.2
MS.gene032497.t1 MTR_2g017620 32.906 234 144 6 20 250 23 246 2.95e-21 89.7
MS.gene032497.t1 MTR_2g017620 32.906 234 144 6 20 250 37 260 4.65e-21 89.7
MS.gene032497.t1 MTR_2g017620 34.857 175 110 3 78 251 9 180 1.31e-20 86.7
MS.gene032497.t1 MTR_2g017590 31.602 231 151 3 20 250 35 258 3.08e-20 87.4
MS.gene032497.t1 MTR_2g104940 29.956 227 151 4 25 251 84 302 1.03e-19 86.7
MS.gene032497.t1 MTR_1g095070 38.365 159 86 4 69 216 25 182 1.79e-19 83.6
MS.gene032497.t1 MTR_4g006730 29.817 218 145 3 25 242 79 288 1.88e-19 85.9
MS.gene032497.t1 MTR_2g017660 30.702 228 148 4 13 237 28 248 1.46e-18 82.8
MS.gene032497.t1 MTR_8g087710 30.303 231 154 3 20 250 38 261 1.51e-18 82.8
MS.gene032497.t1 MTR_7g010650 31.718 227 141 5 21 245 37 251 2.46e-18 82.4
MS.gene032497.t1 MTR_8g087720 29.741 232 156 2 20 251 37 261 1.91e-17 79.7
MS.gene032497.t1 MTR_3g070210 30.088 226 135 6 10 219 44 262 2.16e-17 79.7
MS.gene032497.t1 MTR_4g006730 29.187 209 140 3 34 242 1 201 3.38e-17 78.2
MS.gene032497.t1 MTR_4g006630 29.187 209 140 3 34 242 1 201 4.69e-17 77.8
MS.gene032497.t1 MTR_2g017610 32.701 211 129 5 20 227 37 237 1.25e-16 77.4
MS.gene032497.t1 MTR_4g059390 33.918 171 96 5 21 179 39 204 2.72e-16 75.5
MS.gene032497.t1 MTR_5g010150 32.203 177 108 4 10 179 41 212 2.81e-16 75.5
MS.gene032497.t1 MTR_2g017570 32.227 211 130 5 20 227 37 237 3.14e-16 76.6
MS.gene032497.t1 MTR_4g075590 31.414 191 105 6 69 239 82 266 1.76e-15 75.1
MS.gene032497.t1 MTR_1g070385 30.488 164 111 2 79 242 115 275 2.31e-15 75.9
MS.gene032497.t1 MTR_8g098375 30.857 175 113 3 10 179 41 212 5.16e-15 72.4
MS.gene032497.t1 MTR_4g075570 30.052 193 105 7 69 239 96 280 5.27e-15 73.6
MS.gene032497.t1 MTR_4g415300 33.929 168 94 5 21 179 56 215 1.61e-14 70.9
MS.gene032497.t1 MTR_3g070210 31.210 157 92 4 21 168 55 204 1.99e-12 65.1
MS.gene032497.t1 MTR_8g468730 34.000 100 47 2 139 238 1 81 2.63e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032497.t1 AT4G01470 84.127 252 40 0 1 252 1 252 2.00e-154 430
MS.gene032497.t1 AT2G36830 72.619 252 68 1 1 252 1 251 4.38e-128 363
MS.gene032497.t1 AT3G26520 70.751 253 73 1 1 252 1 253 8.54e-123 350
MS.gene032497.t1 AT3G16240 55.466 247 110 0 6 252 4 250 6.52e-93 274
MS.gene032497.t1 AT1G17810 55.078 256 103 2 9 252 12 267 5.17e-90 267
MS.gene032497.t1 AT1G73190 54.475 257 104 2 9 252 12 268 9.22e-90 266
MS.gene032497.t1 AT5G47450 54.656 247 110 1 5 251 3 247 1.83e-89 265
MS.gene032497.t1 AT4G17340 54.065 246 113 0 5 250 3 248 7.50e-81 243
MS.gene032497.t1 AT2G25810 51.406 249 116 3 3 251 1 244 3.57e-77 234
MS.gene032497.t1 AT3G47440 39.316 234 141 1 18 251 20 252 1.60e-52 171
MS.gene032497.t1 AT3G54820 36.555 238 135 6 13 235 30 266 2.31e-36 130
MS.gene032497.t1 AT3G53420 37.705 244 135 7 21 249 39 280 1.41e-34 125
MS.gene032497.t1 AT3G53420 37.705 244 135 7 21 249 39 280 1.41e-34 125
MS.gene032497.t1 AT2G37170 37.391 230 128 6 21 235 37 265 6.75e-34 124
MS.gene032497.t1 AT4G35100 37.118 229 130 5 21 238 38 263 7.70e-34 124
MS.gene032497.t1 AT4G35100 37.118 229 130 5 21 238 38 263 7.70e-34 124
MS.gene032497.t1 AT2G37170 36.777 242 136 7 21 247 80 319 1.12e-33 124
MS.gene032497.t1 AT2G16850 36.681 229 131 5 21 238 36 261 1.81e-33 122
MS.gene032497.t1 AT2G37180 36.957 230 129 6 21 235 37 265 4.52e-33 122
MS.gene032497.t1 AT5G60660 36.481 233 132 6 21 238 39 270 4.71e-32 119
MS.gene032497.t1 AT2G39010 36.087 230 131 5 21 235 38 266 1.24e-31 118
MS.gene032497.t1 AT4G00430 35.628 247 132 8 10 239 42 278 8.03e-30 113
MS.gene032497.t1 AT4G23400 35.776 232 130 7 21 239 53 278 2.13e-29 112
MS.gene032497.t1 AT2G45960 35.685 241 131 7 10 234 41 273 1.08e-28 110
MS.gene032497.t1 AT1G01620 34.914 232 125 7 21 235 52 274 3.90e-28 108
MS.gene032497.t1 AT3G61430 35.652 230 124 7 21 234 52 273 4.71e-28 108
MS.gene032497.t1 AT3G61430 35.652 230 124 7 21 234 52 273 4.71e-28 108
MS.gene032497.t1 AT1G01620 38.503 187 93 6 66 235 21 202 1.41e-26 103
MS.gene032497.t1 AT1G80760 30.380 237 147 5 21 252 80 303 1.15e-21 92.0
MS.gene032497.t1 AT5G37810 34.595 185 117 2 68 250 83 265 4.54e-21 90.1
MS.gene032497.t1 AT5G37820 34.054 185 118 2 68 250 83 265 1.10e-20 89.0
MS.gene032497.t1 AT5G37820 34.054 185 118 2 68 250 119 301 1.10e-20 89.4
MS.gene032497.t1 AT3G06100 29.091 220 149 4 18 237 43 255 1.69e-19 85.5
MS.gene032497.t1 AT2G45960 32.340 235 125 8 10 218 41 267 7.49e-19 84.3
MS.gene032497.t1 AT3G06100 31.492 181 122 2 57 237 29 207 1.71e-18 82.0
MS.gene032497.t1 AT4G10380 30.043 233 153 5 16 246 71 295 2.80e-18 82.8
MS.gene032497.t1 AT1G52180 52.703 74 35 0 143 216 51 124 3.32e-18 78.6
MS.gene032497.t1 AT2G45960 32.735 223 126 7 10 216 41 255 6.65e-18 81.3
MS.gene032497.t1 AT4G19030 28.452 239 155 5 20 250 54 284 9.18e-18 81.3
MS.gene032497.t1 AT4G18910 30.939 181 114 3 78 250 104 281 1.80e-17 80.1
MS.gene032497.t1 AT2G39010 36.025 161 84 6 21 168 38 192 5.72e-16 75.1
MS.gene032497.t1 AT1G31885 31.050 219 129 7 20 227 42 249 4.52e-15 73.9
MS.gene032497.t1 AT1G31885 34.444 180 99 5 68 234 29 202 1.14e-14 72.0
MS.gene032497.t1 AT3G06100 33.835 133 86 2 105 237 44 174 2.97e-14 69.7
MS.gene032497.t1 AT4G00430 33.136 169 94 5 10 168 42 201 1.60e-13 68.2

Find 61 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTGCTGCACCAATAAA+TGG 0.171426 7.2:+76093676 None:intergenic
ATGAATCCAGCTGTTTCTTT+TGG 0.180792 7.2:-76093751 MS.gene032497:CDS
ATTCCTATATTTCCTTTCTT+TGG 0.200086 7.2:+76093847 None:intergenic
TATTGGGTCGGCCCATTTAT+TGG 0.230799 7.2:-76093688 MS.gene032497:CDS
GGACTCATCATTGGGTCTAT+TGG 0.266787 7.2:-76093705 MS.gene032497:CDS
GAGATCCAATTGCAATTCTA+TGG 0.275529 7.2:+76095744 None:intergenic
AGGTGTTGCAGGGCCATTAT+TGG 0.325699 7.2:+76094558 None:intergenic
ATGAGGCCAGCAGGTGTTGC+AGG 0.333483 7.2:+76094547 None:intergenic
GTCACATTTGGTGCCTTCAT+TGG 0.342791 7.2:-76094439 MS.gene032497:CDS
TTTGAAATTGTGATGACATT+TGG 0.356984 7.2:-76093904 MS.gene032497:CDS
GCAGGCAAACTCACCAATAA+TGG 0.361659 7.2:-76094571 MS.gene032497:intron
GCATCATTATCTCATGCATT+TGG 0.363881 7.2:-76094520 MS.gene032497:CDS
ATCTATGATAATATCTTCAT+TGG 0.367388 7.2:-76093646 MS.gene032497:CDS
TTAGCTGGTGGAGCATTTGA+TGG 0.371173 7.2:-76093781 MS.gene032497:CDS
CTATTTGTTGCTGTTTCTGT+TGG 0.374459 7.2:-76094496 MS.gene032497:CDS
TATTGGATTGCACAGTTACT+TGG 0.387123 7.2:-76094385 MS.gene032497:CDS
TTGGGCCTGCTGTTGTTAGT+TGG 0.390659 7.2:-76093732 MS.gene032497:CDS
AGAATTGCAATTGGATCTCC+TGG 0.392229 7.2:-76095740 MS.gene032497:CDS
GATCCAAAGAAAGGAAATAT+AGG 0.396401 7.2:-76093850 MS.gene032497:CDS
GTTGGACATGGACTCATCAT+TGG 0.396977 7.2:-76093714 MS.gene032497:CDS
AAAAGAAACAGCTGGATTCA+TGG 0.403695 7.2:+76093753 None:intergenic
GACTCATCATTGGGTCTATT+GGG 0.404201 7.2:-76093704 MS.gene032497:CDS
ATTATTGCTCCAATTGCAAT+TGG 0.414156 7.2:-76093826 MS.gene032497:CDS
TCTGTTGGAGCAAACATCTC+TGG 0.415262 7.2:-76094481 MS.gene032497:CDS
ATTGCAATTGGTGTTATTGT+TGG 0.426769 7.2:-76093814 MS.gene032497:CDS
ACAATAACACCAATTGCAAT+TGG 0.431013 7.2:+76093817 None:intergenic
GCAATCCATAGAATTGCAAT+TGG 0.439495 7.2:-76095749 MS.gene032497:CDS
TGCTGGTCAAGGCTCTGGCA+TGG 0.455656 7.2:-76095648 MS.gene032497:CDS
TATCCTCAGATATATCAGTA+TGG 0.456437 7.2:-76093939 MS.gene032497:CDS
ATTCTTCTCAAGTCTGCTAC+TGG 0.457363 7.2:-76094346 MS.gene032497:CDS
GTGAACCCTGCAGTCACATT+TGG 0.467311 7.2:-76094451 MS.gene032497:CDS
CTGCTGTTGTTAGTTGGACA+TGG 0.469672 7.2:-76093726 MS.gene032497:CDS
ATTGGATCTCCTGGAGAGGC+TGG 0.474353 7.2:-76095731 MS.gene032497:CDS
TTGGACATGGACTCATCATT+GGG 0.484496 7.2:-76093713 MS.gene032497:CDS
CAATTGCTGCACCAATAAAT+GGG 0.486680 7.2:+76093677 None:intergenic
AATATCTTCATTGGTGATGA+TGG 0.487502 7.2:-76093637 MS.gene032497:CDS
AATGGCCCTGCAACACCTGC+TGG 0.497081 7.2:-76094553 MS.gene032497:CDS
ACATTTGGTGCCTTCATTGG+AGG 0.511728 7.2:-76094436 MS.gene032497:CDS
AATGCAGCTCTAATTGCATC+AGG 0.511913 7.2:+76095704 None:intergenic
TCAGGTTGACCAGCCTCTCC+AGG 0.514269 7.2:+76095722 None:intergenic
GTTGGTGCAAATATCTTAGC+TGG 0.517744 7.2:-76093796 MS.gene032497:CDS
CTAGAAATCACTGTTTGAGA+GGG 0.520248 7.2:+76093606 None:intergenic
AAGGCACCAAATGTGACTGC+AGG 0.524218 7.2:+76094445 None:intergenic
TGTAATGTTTCCTCCAATGA+AGG 0.525031 7.2:+76094426 None:intergenic
AATTGTGATGACATTTGGAT+TGG 0.527517 7.2:-76093899 MS.gene032497:CDS
GCAGGCCCAAAAGAAACAGC+TGG 0.539419 7.2:+76093745 None:intergenic
CAAGTCTGCTACTGGTGGAA+TGG 0.539965 7.2:-76094338 MS.gene032497:intron
CATGTCCAACTAACAACAGC+AGG 0.542428 7.2:+76093727 None:intergenic
GATGCAGCTATGAGGCCAGC+AGG 0.552988 7.2:+76094538 None:intergenic
CATCATTGGGTCTATTGGGT+CGG 0.557396 7.2:-76093700 MS.gene032497:CDS
GAGATAATGATGCAGCTATG+AGG 0.568805 7.2:+76094530 None:intergenic
TGAGGCCAGCAGGTGTTGCA+GGG 0.569015 7.2:+76094548 None:intergenic
ACAGCAGTAGATCCAAAGAA+AGG 0.572893 7.2:-76093859 MS.gene032497:CDS
TCTAGAAATCACTGTTTGAG+AGG 0.582825 7.2:+76093605 None:intergenic
CTTCTCAAGTCTGCTACTGG+TGG 0.595244 7.2:-76094343 MS.gene032497:CDS
TAGAAATCACTGTTTGAGAG+GGG 0.619749 7.2:+76093607 None:intergenic
TGCAATTGGATCTCCTGGAG+AGG 0.626286 7.2:-76095735 MS.gene032497:CDS
GTTGGAGCAAACATCTCTGG+TGG 0.638105 7.2:-76094478 MS.gene032497:CDS
AGGCACCAAATGTGACTGCA+GGG 0.650741 7.2:+76094446 None:intergenic
ATTCCATACTGATATATCTG+AGG 0.654480 7.2:+76093936 None:intergenic
GGTGCAAATATCTTAGCTGG+TGG 0.673366 7.2:-76093793 MS.gene032497:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTGTTAAAAAATTTATA+AGG - chr7.2:76094414-76094433 MS.gene032497:CDS 10.0%
!!! CTTTTATTAACAAATAAAAT+TGG - chr7.2:76094515-76094534 MS.gene032497:CDS 10.0%
!! AACATTTACTTATTATGTTA+TGG - chr7.2:76094009-76094028 MS.gene032497:intron 15.0%
!! ACATAATAAGTAAATGTTTA+TGG + chr7.2:76094007-76094026 None:intergenic 15.0%
!! ATACTTTCTTGAAATATTAT+CGG + chr7.2:76095142-76095161 None:intergenic 15.0%
!! TCAATTTCTCAAATTATTAT+CGG - chr7.2:76093913-76093932 MS.gene032497:CDS 15.0%
!!! TTTTGAGAAGTATTTTATAT+TGG - chr7.2:76094956-76094975 MS.gene032497:intron 15.0%
!! ATCTATGATAATATCTTCAT+TGG - chr7.2:76095712-76095731 MS.gene032497:CDS 20.0%
!! GTAGACATCTATAATAATTT+AGG - chr7.2:76095263-76095282 MS.gene032497:intron 20.0%
!! TAACAAATAAAATTGGAGAA+TGG - chr7.2:76094522-76094541 MS.gene032497:CDS 20.0%
!! TAATAAGTAAATGTTTATGG+TGG + chr7.2:76094004-76094023 None:intergenic 20.0%
!!! AAATTTTAGCATAAAAGTTG+CGG + chr7.2:76094674-76094693 None:intergenic 20.0%
!!! ATGTGAATTGTTTAGTTTAT+AGG + chr7.2:76094043-76094062 None:intergenic 20.0%
! AAAAGAGTAAATAGAATGGA+TGG + chr7.2:76093800-76093819 None:intergenic 25.0%
! AAAGAGTAAATAGAATGGAT+GGG + chr7.2:76093799-76093818 None:intergenic 25.0%
! ACCTAAAAGAGTAAATAGAA+TGG + chr7.2:76093804-76093823 None:intergenic 25.0%
! ATATTGACCATGTAACTTTA+AGG + chr7.2:76094624-76094643 None:intergenic 25.0%
! ATTAGACACAAACACAATAT+AGG - chr7.2:76095202-76095221 MS.gene032497:intron 25.0%
! ATTCCTATATTTCCTTTCTT+TGG + chr7.2:76095514-76095533 None:intergenic 25.0%
! CTTACACTTTCTTTAAATGA+AGG - chr7.2:76094209-76094228 MS.gene032497:intron 25.0%
! GAATTGACATTTCAAATTGT+AGG - chr7.2:76093825-76093844 MS.gene032497:CDS 25.0%
! TACTTATTATGTTATGGATC+CGG - chr7.2:76094015-76094034 MS.gene032497:intron 25.0%
! TCACTGTAAATACTTAATTC+TGG - chr7.2:76094471-76094490 MS.gene032497:CDS 25.0%
!! AAAGAAAGTGTAAGAACATA+GGG + chr7.2:76094203-76094222 None:intergenic 25.0%
!! ATTCTATTTACTCTTTTAGG+TGG - chr7.2:76093803-76093822 MS.gene032497:CDS 25.0%
!! ATTGTTTAGTTTATAGGAAC+CGG + chr7.2:76094037-76094056 None:intergenic 25.0%
!! TAAAGAAAGTGTAAGAACAT+AGG + chr7.2:76094204-76094223 None:intergenic 25.0%
!! TCCATTCTATTTACTCTTTT+AGG - chr7.2:76093800-76093819 MS.gene032497:CDS 25.0%
!! TGTGTCAAGTATACTTTTAT+CGG + chr7.2:76095238-76095257 None:intergenic 25.0%
!! TTTGAAATTGTGATGACATT+TGG - chr7.2:76095454-76095473 MS.gene032497:intron 25.0%
!!! ATGACTATTGTTGGTTATTT+TGG - chr7.2:76094765-76094784 MS.gene032497:intron 25.0%
AACCATTAAGTAACAACCAA+AGG - chr7.2:76094086-76094105 MS.gene032497:intron 30.0%
AAGAGTAAATAGAATGGATG+GGG + chr7.2:76093798-76093817 None:intergenic 30.0%
AATTGTGATGACATTTGGAT+TGG - chr7.2:76095459-76095478 MS.gene032497:intron 30.0%
ACAATAACACCAATTGCAAT+TGG + chr7.2:76095544-76095563 None:intergenic 30.0%
AGAATGACAGATACAAACAT+TGG - chr7.2:76095094-76095113 MS.gene032497:intron 30.0%
AGCAAAAACAAAAATGAGCA+TGG + chr7.2:76093694-76093713 None:intergenic 30.0%
ATTATTGCTCCAATTGCAAT+TGG - chr7.2:76095532-76095551 MS.gene032497:intron 30.0%
ATTCCATACTGATATATCTG+AGG + chr7.2:76095425-76095444 None:intergenic 30.0%
CGGAGTTCAAATATTCTTAA+AGG + chr7.2:76094599-76094618 None:intergenic 30.0%
GATCCAAAGAAAGGAAATAT+AGG - chr7.2:76095508-76095527 MS.gene032497:intron 30.0%
GCAGTTTATCTTTAAACTAG+TGG + chr7.2:76094374-76094393 None:intergenic 30.0%
GCTAGTAAAATGACTATTGT+TGG - chr7.2:76094756-76094775 MS.gene032497:intron 30.0%
TATCCTCAGATATATCAGTA+TGG - chr7.2:76095419-76095438 MS.gene032497:intron 30.0%
TGCTTAAAGCTGAAGATTAA+TGG + chr7.2:76095049-76095068 None:intergenic 30.0%
! TTCCTTTGGTTGTTACTTAA+TGG + chr7.2:76094091-76094110 None:intergenic 30.0%
! TTTTGCAAATTGAACATTGC+AGG - chr7.2:76095378-76095397 MS.gene032497:intron 30.0%
!! AATATCTTCATTGGTGATGA+TGG - chr7.2:76095721-76095740 MS.gene032497:CDS 30.0%
!! ATTGCAATTGGTGTTATTGT+TGG - chr7.2:76095544-76095563 MS.gene032497:intron 30.0%
!!! ATGCTCATTTTTGTTTTTGC+TGG - chr7.2:76093693-76093712 MS.gene032497:CDS 30.0%
!!! ATTTTTGTTTTTGCTGGTCA+AGG - chr7.2:76093699-76093718 MS.gene032497:CDS 30.0%
AAAAGAAACAGCTGGATTCA+TGG + chr7.2:76095608-76095627 None:intergenic 35.0%
AAAGAACATAGATGTTCACG+AGG + chr7.2:76094342-76094361 None:intergenic 35.0%
CAATTGCTGCACCAATAAAT+GGG + chr7.2:76095684-76095703 None:intergenic 35.0%
CTAGAAATCACTGTTTGAGA+GGG + chr7.2:76095755-76095774 None:intergenic 35.0%
GAGATCCAATTGCAATTCTA+TGG + chr7.2:76093617-76093636 None:intergenic 35.0%
GCAATCCATAGAATTGCAAT+TGG - chr7.2:76093609-76093628 MS.gene032497:CDS 35.0%
GCATCATTATCTCATGCATT+TGG - chr7.2:76094838-76094857 MS.gene032497:intron 35.0%
TAGAAATCACTGTTTGAGAG+GGG + chr7.2:76095754-76095773 None:intergenic 35.0%
TATTGGATTGCACAGTTACT+TGG - chr7.2:76094973-76094992 MS.gene032497:intron 35.0%
TGTAATGTTTCCTCCAATGA+AGG + chr7.2:76094935-76094954 None:intergenic 35.0%
! GACCATGTAACTTTAAGGAA+CGG + chr7.2:76094619-76094638 None:intergenic 35.0%
! TTTCACTTCAGTCACTTTAG+AGG - chr7.2:76094167-76094186 MS.gene032497:intron 35.0%
!! CTATTTGTTGCTGTTTCTGT+TGG - chr7.2:76094862-76094881 MS.gene032497:intron 35.0%
!!! ATGAATCCAGCTGTTTCTTT+TGG - chr7.2:76095607-76095626 MS.gene032497:intron 35.0%
!!! CTATTGTTGGTTATTTTGGC+AGG - chr7.2:76094769-76094788 MS.gene032497:intron 35.0%
!!! TGAATCCAGCTGTTTCTTTT+GGG - chr7.2:76095608-76095627 MS.gene032497:intron 35.0%
ACAGCAGTAGATCCAAAGAA+AGG - chr7.2:76095499-76095518 MS.gene032497:intron 40.0%
AGAATTGCAATTGGATCTCC+TGG - chr7.2:76093618-76093637 MS.gene032497:CDS 40.0%
ATTCTTCTCAAGTCTGCTAC+TGG - chr7.2:76095012-76095031 MS.gene032497:intron 40.0%
CAACCAAAGGAAGATATCGT+AGG - chr7.2:76094099-76094118 MS.gene032497:intron 40.0%
CTCCGTTCCTTAAAGTTACA+TGG - chr7.2:76094614-76094633 MS.gene032497:intron 40.0%
GACTCATCATTGGGTCTATT+GGG - chr7.2:76095654-76095673 MS.gene032497:CDS 40.0%
GAGATAATGATGCAGCTATG+AGG + chr7.2:76094831-76094850 None:intergenic 40.0%
GCAATTGCTGCACCAATAAA+TGG + chr7.2:76095685-76095704 None:intergenic 40.0%
GCTAACACATGTTTGACACT+CGG + chr7.2:76093856-76093875 None:intergenic 40.0%
GGATGGGGCAAATTAAGATA+AGG + chr7.2:76093783-76093802 None:intergenic 40.0%
GTTGGTGCAAATATCTTAGC+TGG - chr7.2:76095562-76095581 MS.gene032497:intron 40.0%
TAAAAGTTGCGGAGTACGTT+AGG + chr7.2:76094663-76094682 None:intergenic 40.0%
TGGATACGACACTGAAACAT+AGG - chr7.2:76095114-76095133 MS.gene032497:intron 40.0%
TTGCCTACGATATCTTCCTT+TGG + chr7.2:76094105-76094124 None:intergenic 40.0%
TTGGACATGGACTCATCATT+GGG - chr7.2:76095645-76095664 MS.gene032497:CDS 40.0%
! AATGCAGCTCTAATTGCATC+AGG + chr7.2:76093657-76093676 None:intergenic 40.0%
! CTGTGTCACTGTTTCATGAA+TGG - chr7.2:76093951-76093970 MS.gene032497:CDS 40.0%
!!! ATTTTAGAACCGTTCCTCAG+GGG - chr7.2:76094261-76094280 MS.gene032497:intron 40.0%
!!! CATTTTAGAACCGTTCCTCA+GGG - chr7.2:76094260-76094279 MS.gene032497:intron 40.0%
!!! TCATTTTAGAACCGTTCCTC+AGG - chr7.2:76094259-76094278 MS.gene032497:intron 40.0%
ACCAAAGTTCAAATCCCCTG+AGG + chr7.2:76094278-76094297 None:intergenic 45.0%
AGTTCAAATCCCCTGAGGAA+CGG + chr7.2:76094273-76094292 None:intergenic 45.0%
CATCATTGGGTCTATTGGGT+CGG - chr7.2:76095658-76095677 MS.gene032497:CDS 45.0%
CATGTCCAACTAACAACAGC+AGG + chr7.2:76095634-76095653 None:intergenic 45.0%
CTGCTGTTGTTAGTTGGACA+TGG - chr7.2:76095632-76095651 MS.gene032497:intron 45.0%
GCAGGCAAACTCACCAATAA+TGG - chr7.2:76094787-76094806 MS.gene032497:intron 45.0%
GGACTCATCATTGGGTCTAT+TGG - chr7.2:76095653-76095672 MS.gene032497:CDS 45.0%
GGTGCAAATATCTTAGCTGG+TGG - chr7.2:76095565-76095584 MS.gene032497:intron 45.0%
GTTGGACATGGACTCATCAT+TGG - chr7.2:76095644-76095663 MS.gene032497:CDS 45.0%
TATTGGGTCGGCCCATTTAT+TGG - chr7.2:76095670-76095689 MS.gene032497:CDS 45.0%
TCCTCAGGGGATTTGAACTT+TGG - chr7.2:76094274-76094293 MS.gene032497:intron 45.0%
TCTGTTGGAGCAAACATCTC+TGG - chr7.2:76094877-76094896 MS.gene032497:intron 45.0%
! TTAGCTGGTGGAGCATTTGA+TGG - chr7.2:76095577-76095596 MS.gene032497:intron 45.0%
! TTCACGAGGTGTTTGCTCAA+TGG + chr7.2:76094328-76094347 None:intergenic 45.0%
!! ACATTTGGTGCCTTCATTGG+AGG - chr7.2:76094922-76094941 MS.gene032497:intron 45.0%
!! GTCACATTTGGTGCCTTCAT+TGG - chr7.2:76094919-76094938 MS.gene032497:intron 45.0%
AGGCACCAAATGTGACTGCA+GGG + chr7.2:76094915-76094934 None:intergenic 50.0%
CAAGTCTGCTACTGGTGGAA+TGG - chr7.2:76095020-76095039 MS.gene032497:intron 50.0%
CTTCTCAAGTCTGCTACTGG+TGG - chr7.2:76095015-76095034 MS.gene032497:intron 50.0%
GTGAACCCTGCAGTCACATT+TGG - chr7.2:76094907-76094926 MS.gene032497:intron 50.0%
GTTGGAGCAAACATCTCTGG+TGG - chr7.2:76094880-76094899 MS.gene032497:intron 50.0%
TGCAATTGGATCTCCTGGAG+AGG - chr7.2:76093623-76093642 MS.gene032497:CDS 50.0%
TGCGAGTGTCTGACATGTGT+TGG + chr7.2:76095334-76095353 None:intergenic 50.0%
TTGGGCCTGCTGTTGTTAGT+TGG - chr7.2:76095626-76095645 MS.gene032497:intron 50.0%
! AAGGCACCAAATGTGACTGC+AGG + chr7.2:76094916-76094935 None:intergenic 50.0%
! AGGTGTTGCAGGGCCATTAT+TGG + chr7.2:76094803-76094822 None:intergenic 50.0%
! GTTTTTGCTGGTCAAGGCTC+TGG - chr7.2:76093705-76093724 MS.gene032497:CDS 50.0%
ATTGGATCTCCTGGAGAGGC+TGG - chr7.2:76093627-76093646 MS.gene032497:CDS 55.0%
GCAGGCCCAAAAGAAACAGC+TGG + chr7.2:76095616-76095635 None:intergenic 55.0%
AATGGCCCTGCAACACCTGC+TGG - chr7.2:76094805-76094824 MS.gene032497:intron 60.0%
GATGCAGCTATGAGGCCAGC+AGG + chr7.2:76094823-76094842 None:intergenic 60.0%
! ATGAGGCCAGCAGGTGTTGC+AGG + chr7.2:76094814-76094833 None:intergenic 60.0%
! TGAGGCCAGCAGGTGTTGCA+GGG + chr7.2:76094813-76094832 None:intergenic 60.0%
! TGCTGGTCAAGGCTCTGGCA+TGG - chr7.2:76093710-76093729 MS.gene032497:CDS 60.0%
!! TCAGGTTGACCAGCCTCTCC+AGG + chr7.2:76093639-76093658 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 76093606 76095774 76093606 ID=MS.gene032497
chr7.2 mRNA 76093606 76095774 76093606 ID=MS.gene032497.t1;Parent=MS.gene032497
chr7.2 exon 76095642 76095774 76095642 ID=MS.gene032497.t1.exon1;Parent=MS.gene032497.t1
chr7.2 CDS 76095642 76095774 76095642 ID=cds.MS.gene032497.t1;Parent=MS.gene032497.t1
chr7.2 exon 76094339 76094589 76094339 ID=MS.gene032497.t1.exon2;Parent=MS.gene032497.t1
chr7.2 CDS 76094339 76094589 76094339 ID=cds.MS.gene032497.t1;Parent=MS.gene032497.t1
chr7.2 exon 76093606 76093980 76093606 ID=MS.gene032497.t1.exon3;Parent=MS.gene032497.t1
chr7.2 CDS 76093606 76093980 76093606 ID=cds.MS.gene032497.t1;Parent=MS.gene032497.t1
Gene Sequence

>MS.gene032497

ATGGCAATCCATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCCATGCTCATTTTTGTTTTTGCTGGTCAAGGCTCTGGCATGGCTTACAGTGAGCACTCTACATATTCACTTAAAACTTGTGTTTTACTACCTTATCTTAATTTGCCCCATCCATTCTATTTACTCTTTTAGGTGGAATTGACATTTCAAATTGTAGGTGTTTCCGAGTGTCAAACATGTGTTAGCGCTCGACGCTAACAGATGTGTTTATATTGAATCACTTTCAATTTCTCAAATTATTATCGGTGTCTATGTCATCGTCTGTGTCACTGTTTCATGAATGGACATGTCATGTTTTTACAATTTCGTTTCCACCATAAACATTTACTTATTATGTTATGGATCCGGTTCCTATAAACTAAACAATTCACATAAGAGTGTAAAATGAGTAGTATCAACCATTAAGTAACAACCAAAGGAAGATATCGTAGGCAAGTCATGACAAATCACGAATTTGTTAAAATAACAACTCTTTATTTTCACTTCAGTCACTTTAGAGGATTTAAAAATCCCTATGTTCTTACACTTTCTTTAAATGAAGGAAATTGTTATCAATTAAATTGATATTGTCATTTTAGAACCGTTCCTCAGGGGATTTGAACTTTGGTTCTTAATGTTACAAATTCTTACGCTTACCATTGAGCAAACACCTCGTGAACATCTATGTTCTTTATTTTATCGCCACTAGTTTAAAGATAAACTGCAGTTTACAGTAATTTGAAGAAAAGTGTTAAAAAATTTATAAGGCAAAGCAGTAAAGCTCATTCATGCATTTAATAGTTCACTGTAAATACTTAATTCTGGCTACATAACATTTTTGTTTTTCTTTTATTAACAAATAAAATTGGAGAATGGAGATTTTGTTATTAATAATTATAATGACACTAAATGATTATTATACGAACACCTTTAAGAATATTTGAACTCCGTTCCTTAAAGTTACATGGTCAATATTTTACTAGAGTTCGCGCCTAACGTACTCCGCAACTTTTATGCTAAAATTTTGAAAACTATATGATTCAAGAGTTTTTTCTTTCTTTCATCTATTTTGATGCATTATTAATATGCTAGTAAAATGACTATTGTTGGTTATTTTGGCAGGCAAACTCACCAATAATGGCCCTGCAACACCTGCTGGCCTCATAGCTGCATCATTATCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTTGGAGCAAACATCTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTCAAGTCTGCTACTGGTGGAATGGTAACCATTAATCTTCAGCTTTAAGCACTATTATACTTATGAACTCTATGAAAGAATGACAGATACAAACATTGGATACGACACTGAAACATAGGCACCGATAATATTTCAAGAAAGTATAAGTGATCGTATGTGTCGTGTCGTGTCAAATATATTAGATATTAGACACAAACACAATATAGGCACATAGACGCCGATAAAAGTATACTTGACACATAAACGTAGACATCTATAATAATTTAGGAAAATAAAAGTAATTAAATGTAATCACATGTGTCACTGTAAGATACCAACACATGTCAGACACTCGCATTCTACTCATGATTGAATTGATTTTTTTGCAAATTGAACATTGCAGGAGACATCAGCATTTGCAATATCCTCAGATATATCAGTATGGAATGCACTTCTTTTTGAAATTGTGATGACATTTGGATTGGTATACACAGTTTATGCAACAGCAGTAGATCCAAAGAAAGGAAATATAGGAATTATTGCTCCAATTGCAATTGGTGTTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGAGCATCCATGAATCCAGCTGTTTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACTCATCATTGGGTCTATTGGGTCGGCCCATTTATTGGTGCAGCAATTGCTGCTATTATCTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCTCAAACAGTGATTTCTAG
Protein sequence

>MS.gene032497.t1

MAIHRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFAISSDISVWNALLFEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGVIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSNSDF