AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021061

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021061.t1 MTR_4g063090 100.000 252 0 0 1 252 1 252 9.90e-179 491
MS.gene021061.t1 MTR_7g023350 78.175 252 55 0 1 252 1 252 3.79e-132 373
MS.gene021061.t1 MTR_1g115405 74.206 252 65 0 1 252 1 252 1.38e-130 369
MS.gene021061.t1 MTR_7g103030 74.603 252 62 2 1 252 1 250 7.43e-120 342
MS.gene021061.t1 MTR_2g101370 65.289 242 83 1 6 247 5 245 6.78e-101 294
MS.gene021061.t1 MTR_8g013680 61.066 244 86 2 14 251 6 246 8.27e-97 283
MS.gene021061.t1 MTR_1g077540 53.101 258 115 1 1 252 1 258 1.49e-95 281
MS.gene021061.t1 MTR_6g069040 54.902 255 112 1 1 252 1 255 2.56e-90 267
MS.gene021061.t1 MTR_5g012810 59.677 248 97 2 5 252 3 247 1.90e-85 254
MS.gene021061.t1 MTR_1g006490 54.008 237 105 2 3 239 1 233 7.86e-85 253
MS.gene021061.t1 MTR_1g006590 51.020 245 116 2 3 247 1 241 3.77e-81 244
MS.gene021061.t1 MTR_2g060360 44.037 218 121 1 18 235 16 232 8.69e-58 184
MS.gene021061.t1 MTR_2g094270 36.475 244 130 6 12 235 31 269 4.41e-39 137
MS.gene021061.t1 MTR_7g101190 37.344 241 135 6 10 235 28 267 3.10e-37 132
MS.gene021061.t1 MTR_3g118010 36.975 238 135 6 21 247 37 270 4.16e-35 127
MS.gene021061.t1 MTR_8g098375 33.613 238 143 5 10 235 41 275 3.68e-32 119
MS.gene021061.t1 MTR_4g059390 34.156 243 136 6 12 235 30 267 4.00e-32 119
MS.gene021061.t1 MTR_5g063930 35.021 237 136 4 18 245 34 261 8.10e-31 115
MS.gene021061.t1 MTR_1g095070 41.237 194 93 6 69 247 25 212 1.42e-30 113
MS.gene021061.t1 MTR_4g415300 34.914 232 125 7 21 235 56 278 2.92e-30 114
MS.gene021061.t1 MTR_3g070210 33.610 241 137 6 10 234 44 277 3.52e-30 114
MS.gene021061.t1 MTR_5g010150 32.773 238 145 5 10 235 41 275 7.35e-30 113
MS.gene021061.t1 MTR_5g082070 33.333 237 143 5 10 234 44 277 3.15e-29 111
MS.gene021061.t1 MTR_2g094270 35.814 215 116 5 12 209 31 240 2.12e-28 109
MS.gene021061.t1 MTR_4g084880 33.188 229 146 4 20 247 34 256 5.44e-26 102
MS.gene021061.t1 MTR_2g017620 34.061 229 142 5 20 247 23 243 6.69e-26 102
MS.gene021061.t1 MTR_2g017620 34.061 229 142 5 20 247 37 257 1.13e-25 102
MS.gene021061.t1 MTR_2g017590 33.624 229 143 5 20 247 35 255 3.64e-24 97.8
MS.gene021061.t1 MTR_2g017620 37.427 171 103 3 78 247 9 176 7.25e-24 95.1
MS.gene021061.t1 MTR_3g008920 36.073 219 126 6 20 235 25 232 1.07e-23 96.7
MS.gene021061.t1 MTR_5g079570 33.182 220 131 6 20 235 39 246 1.16e-22 94.0
MS.gene021061.t1 MTR_2g104940 33.498 203 127 4 25 227 84 278 2.09e-22 94.0
MS.gene021061.t1 MTR_1g070385 28.972 214 144 4 21 234 62 267 2.68e-22 95.9
MS.gene021061.t1 MTR_7g010650 31.780 236 145 6 21 250 37 262 9.05e-22 91.7
MS.gene021061.t1 MTR_8g087710 32.314 229 146 5 20 247 38 258 1.03e-21 91.7
MS.gene021061.t1 MTR_2g017660 29.365 252 167 5 1 248 16 260 4.82e-21 89.7
MS.gene021061.t1 MTR_8g087720 32.530 249 150 7 8 251 21 256 8.81e-21 89.0
MS.gene021061.t1 MTR_1g095070 40.491 163 77 5 69 216 25 182 1.21e-20 86.7
MS.gene021061.t1 MTR_3g070210 31.416 226 132 6 10 219 44 262 1.54e-20 88.6
MS.gene021061.t1 MTR_4g006730 31.401 207 134 3 21 227 75 273 3.89e-20 87.8
MS.gene021061.t1 MTR_1g097840 33.180 217 123 8 25 234 78 279 1.83e-19 85.9
MS.gene021061.t1 MTR_2g017610 31.760 233 145 7 20 251 37 256 5.25e-19 84.0
MS.gene021061.t1 MTR_2g017570 31.760 233 145 7 20 251 37 256 7.12e-19 83.6
MS.gene021061.t1 MTR_4g059390 32.778 180 104 5 12 179 30 204 4.89e-18 80.1
MS.gene021061.t1 MTR_4g006730 30.412 194 127 3 34 227 1 186 1.87e-17 79.0
MS.gene021061.t1 MTR_4g006630 30.412 194 127 3 34 227 1 186 2.20e-17 78.6
MS.gene021061.t1 MTR_8g098375 30.337 178 116 3 10 182 41 215 5.43e-17 77.8
MS.gene021061.t1 MTR_4g415300 33.136 169 94 5 21 179 56 215 1.79e-16 76.3
MS.gene021061.t1 MTR_3g070210 30.899 178 107 4 10 178 44 214 6.15e-16 74.7
MS.gene021061.t1 MTR_5g010150 30.286 175 114 3 10 179 41 212 1.52e-15 73.6
MS.gene021061.t1 MTR_4g075570 27.624 181 109 4 69 229 96 274 2.46e-13 68.9
MS.gene021061.t1 MTR_4g075590 27.004 237 148 6 13 229 29 260 3.00e-13 68.6
MS.gene021061.t1 MTR_8g468730 34.545 110 49 4 137 246 2 88 7.18e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021061.t1 AT2G36830 80.159 252 49 1 1 252 1 251 1.49e-142 399
MS.gene021061.t1 AT4G01470 78.175 252 55 0 1 252 1 252 4.31e-140 393
MS.gene021061.t1 AT3G26520 75.889 253 60 1 1 252 1 253 4.81e-133 375
MS.gene021061.t1 AT5G47450 60.729 247 95 1 5 251 3 247 3.55e-96 282
MS.gene021061.t1 AT3G16240 58.400 250 104 0 3 252 1 250 6.15e-95 279
MS.gene021061.t1 AT1G73190 58.750 240 93 2 9 243 12 250 2.87e-91 270
MS.gene021061.t1 AT1G17810 58.264 242 95 2 9 245 12 252 6.64e-89 264
MS.gene021061.t1 AT4G17340 59.919 247 97 1 5 251 3 247 2.35e-86 257
MS.gene021061.t1 AT2G25810 53.414 249 109 3 3 251 1 242 3.10e-80 241
MS.gene021061.t1 AT3G47440 43.379 219 123 1 18 236 20 237 1.50e-53 174
MS.gene021061.t1 AT2G37170 37.209 258 139 8 11 247 21 276 1.10e-36 131
MS.gene021061.t1 AT3G53420 37.849 251 139 7 12 247 30 278 1.45e-36 131
MS.gene021061.t1 AT3G53420 37.849 251 139 7 12 247 30 278 1.45e-36 131
MS.gene021061.t1 AT2G37170 37.209 258 139 8 11 247 64 319 1.58e-36 132
MS.gene021061.t1 AT3G54820 35.270 241 140 5 10 235 27 266 1.99e-35 128
MS.gene021061.t1 AT2G37180 36.328 256 140 8 10 247 26 276 7.40e-35 126
MS.gene021061.t1 AT2G39010 35.510 245 130 7 12 235 29 266 1.37e-34 125
MS.gene021061.t1 AT4G35100 36.555 238 136 6 21 247 38 271 1.54e-34 125
MS.gene021061.t1 AT4G35100 36.555 238 136 6 21 247 38 271 1.54e-34 125
MS.gene021061.t1 AT5G60660 35.458 251 145 7 12 247 30 278 2.62e-34 125
MS.gene021061.t1 AT2G16850 35.714 238 138 6 21 247 36 269 6.93e-33 121
MS.gene021061.t1 AT4G00430 34.156 243 134 7 10 235 42 275 2.07e-30 115
MS.gene021061.t1 AT4G23400 34.483 232 126 6 21 235 53 275 1.82e-29 112
MS.gene021061.t1 AT3G61430 35.498 231 123 7 21 234 52 273 1.09e-28 110
MS.gene021061.t1 AT3G61430 35.498 231 123 7 21 234 52 273 1.09e-28 110
MS.gene021061.t1 AT1G01620 34.483 232 126 7 21 235 52 274 1.10e-28 110
MS.gene021061.t1 AT2G45960 34.298 242 133 7 10 234 41 273 2.41e-28 109
MS.gene021061.t1 AT1G01620 38.043 184 90 6 69 235 26 202 2.66e-26 102
MS.gene021061.t1 AT1G52180 56.627 83 36 0 134 216 42 124 2.09e-23 92.0
MS.gene021061.t1 AT1G80760 32.579 221 140 5 25 245 84 295 1.54e-22 94.4
MS.gene021061.t1 AT4G19030 30.196 255 156 6 8 247 34 281 1.05e-21 92.0
MS.gene021061.t1 AT5G37810 31.278 227 149 3 21 247 43 262 2.90e-21 90.5
MS.gene021061.t1 AT5G37820 30.350 257 160 5 3 247 13 262 5.75e-21 89.7
MS.gene021061.t1 AT5G37820 30.350 257 160 5 3 247 49 298 1.07e-20 89.4
MS.gene021061.t1 AT2G39010 33.149 181 100 5 12 178 29 202 9.37e-20 85.1
MS.gene021061.t1 AT4G18910 29.237 236 151 6 20 247 51 278 2.68e-19 85.5
MS.gene021061.t1 AT1G31885 29.661 236 150 4 20 247 42 269 5.41e-19 84.7
MS.gene021061.t1 AT2G45960 32.143 224 126 7 10 216 41 255 1.17e-18 83.2
MS.gene021061.t1 AT2G45960 32.143 224 126 7 10 216 41 255 1.34e-18 83.6
MS.gene021061.t1 AT4G10380 31.628 215 129 5 25 234 82 283 1.79e-18 83.2
MS.gene021061.t1 AT3G06100 27.397 219 152 4 18 236 43 254 2.48e-18 82.4
MS.gene021061.t1 AT1G31885 33.708 178 107 3 78 247 41 215 3.02e-18 82.0
MS.gene021061.t1 AT3G06100 27.700 213 147 4 24 236 1 206 3.28e-17 78.6
MS.gene021061.t1 AT4G00430 32.022 178 102 5 10 177 42 210 3.15e-15 72.8
MS.gene021061.t1 AT3G06100 31.061 132 89 2 105 236 44 173 1.92e-13 67.4

Find 58 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTGGTGCTAACATTTC+TGG 0.108507 4.3:-40556153 MS.gene021061:CDS
ATGAACCCAGCCGTTTCTTT+TGG 0.219580 4.3:-40555225 MS.gene021061:CDS
GGGCTAATCATTGGGTCTAT+TGG 0.263332 4.3:-40555179 MS.gene021061:CDS
GTTAACCCTGCTGTCACTTT+TGG 0.284147 4.3:-40556123 MS.gene021061:CDS
ATTGGAAATCCTTCTGAGTT+TGG 0.293211 4.3:-40556504 MS.gene021061:CDS
TTTGAGATTGTGATGACTTT+TGG 0.309198 4.3:-40555378 MS.gene021061:CDS
TATTGGGTCGGCCCGTTGAT+TGG 0.316776 4.3:-40555162 MS.gene021061:CDS
TTGCCGGTCACGGATTATTA+AGG 0.327558 4.3:-40555078 None:intergenic
ATTGCAATTGGTTTCATAGT+TGG 0.339661 4.3:-40555288 MS.gene021061:CDS
CTGCTGTTGTTAGCTGGACA+TGG 0.355517 4.3:-40555200 MS.gene021061:CDS
CCAATTGCAATTCTAGAAAT+CGG 0.358019 4.3:+40556522 None:intergenic
CCGATTTCTAGAATTGCAAT+TGG 0.370439 4.3:-40556522 MS.gene021061:CDS
AAAAGAAACGGCTGGGTTCA+TGG 0.373455 4.3:+40555227 None:intergenic
TTGGGCCTGCTGTTGTTAGC+TGG 0.373980 4.3:-40555206 MS.gene021061:CDS
GTCTTTGCAGGGGAAGGATC+TGG 0.376047 4.3:-40556426 MS.gene021061:CDS
TGGCAAAGCTGATGCACTTA+AGG 0.381290 4.3:-40556484 MS.gene021061:CDS
GCTGGACATGGGCTAATCAT+TGG 0.392902 4.3:-40555188 MS.gene021061:CDS
TCTGCATTCTCATTATCTTC+TGG 0.394809 4.3:-40555426 MS.gene021061:CDS
GGCTAATCATTGGGTCTATT+GGG 0.404201 4.3:-40555178 MS.gene021061:CDS
TATTGGATTGCTCAGTTGCT+TGG 0.424094 4.3:-40556057 MS.gene021061:CDS
TTAGCAGGTGGTGCATTTGA+TGG 0.429164 4.3:-40555255 MS.gene021061:CDS
ACAATTGCTCCAATTGCAAT+TGG 0.430105 4.3:-40555300 MS.gene021061:CDS
TAGCTCTTATGAACAGTTGC+CGG 0.435497 4.3:-40555094 MS.gene021061:CDS
CAATTGGAGCAATTGTTCCT+AGG 0.454950 4.3:+40555307 None:intergenic
TTCTCATTATCTTCTGGTGT+GGG 0.456268 4.3:-40555420 MS.gene021061:CDS
GGACACATTACACTCATTAG+AGG 0.456484 4.3:-40556087 MS.gene021061:CDS
ACTATGAAACCAATTGCAAT+TGG 0.458046 4.3:+40555291 None:intergenic
CTGGACATGGGCTAATCATT+GGG 0.474402 4.3:-40555187 MS.gene021061:CDS
GCAGGCCCAAAAGAAACGGC+TGG 0.496275 4.3:+40555219 None:intergenic
AATGGTGCAGCAACACCAGC+AGG 0.497841 4.3:-40556225 MS.gene021061:CDS
CAATAGCAGAACCAATCAAC+GGG 0.504842 4.3:+40555151 None:intergenic
TAAAATTGCCACTGGTGGAC+TGG 0.504856 4.3:-40556010 MS.gene021061:intron
CTCCTTAAAATTGCCACTGG+TGG 0.510876 4.3:-40556015 MS.gene021061:CDS
AACAGCAGGCCCAAAAGAAA+CGG 0.513230 4.3:+40555215 None:intergenic
TTGCTCCTTAAAATTGCCAC+TGG 0.517240 4.3:-40556018 MS.gene021061:CDS
GTTGGAGCTAACATCTTAGC+AGG 0.528561 4.3:-40555270 MS.gene021061:CDS
TTATGAACAGTTGCCGGTCA+CGG 0.529501 4.3:-40555088 MS.gene021061:CDS
CATGTCCAGCTAACAACAGC+AGG 0.530958 4.3:+40555201 None:intergenic
AAAGCACCAAAAGTGACAGC+AGG 0.532536 4.3:+40556117 None:intergenic
GCAACTGTTCATAAGAGCTA+GGG 0.532887 4.3:+40555097 None:intergenic
TGCTGTTGTTAGCTGGACAT+GGG 0.535749 4.3:-40555199 MS.gene021061:CDS
ATTCTCATTATCTTCTGGTG+TGG 0.543635 4.3:-40555421 MS.gene021061:CDS
GGCAACTGTTCATAAGAGCT+AGG 0.554681 4.3:+40555096 None:intergenic
AGGCCTTAATAATCCGTGAC+CGG 0.554853 4.3:+40555075 None:intergenic
AATCATTGGGTCTATTGGGT+CGG 0.564922 4.3:-40555174 MS.gene021061:CDS
TCAGCTTTGCCAAACTCAGA+AGG 0.564993 4.3:+40556495 None:intergenic
GTTGGTGCTAACATTTCTGG+TGG 0.567619 4.3:-40556150 MS.gene021061:CDS
ACAGATAAGCTTACAAACAA+TGG 0.573110 4.3:-40556243 MS.gene021061:intron
TGCAGCAACACCAGCAGGGT+TGG 0.574909 4.3:-40556220 MS.gene021061:CDS
GATGCAGCTACCAACCCTGC+TGG 0.592819 4.3:+40556210 None:intergenic
GCAATAGCAGAACCAATCAA+CGG 0.595929 4.3:+40555150 None:intergenic
CAGGCCCAAAAGAAACGGCT+GGG 0.605903 4.3:+40555220 None:intergenic
TGCAGGGGAAGGATCTGGCA+TGG 0.613277 4.3:-40556421 MS.gene021061:CDS
GTTTCTCACCAGTCCACCAG+TGG 0.659307 4.3:+40556002 None:intergenic
AAGCACCAAAAGTGACAGCA+GGG 0.671108 4.3:+40556118 None:intergenic
CAACTGTTCATAAGAGCTAG+GGG 0.679445 4.3:+40555098 None:intergenic
ATGGTGCAGCAACACCAGCA+GGG 0.686064 4.3:-40556224 MS.gene021061:CDS
GGAGCTAACATCTTAGCAGG+TGG 0.688136 4.3:-40555267 MS.gene021061:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAGCATAAAACAATT+TGG + chr4.3:40555952-40555971 None:intergenic 15.0%
!!! ATTTTATCACATTGAAATTT+TGG + chr4.3:40555879-40555898 None:intergenic 15.0%
!!! TAAGTTAAATCGAAAATTTT+CGG + chr4.3:40555248-40555267 None:intergenic 15.0%
!!! TTGTTTTATGCTTATAATTT+CGG - chr4.3:40555954-40555973 MS.gene021061:intron 15.0%
!! ATCTAAATAACCTAAACTAT+AGG - chr4.3:40555773-40555792 MS.gene021061:intron 20.0%
!!! CAACTTAACTTTTCTTTTTA+GGG - chr4.3:40556113-40556132 MS.gene021061:CDS 20.0%
!!! TTTATTTTCAACCATAGTTA+AGG + chr4.3:40555822-40555841 None:intergenic 20.0%
! CTTATAATTTCGGTAACAAA+AGG - chr4.3:40555964-40555983 MS.gene021061:intron 25.0%
!! GCAACTTAACTTTTCTTTTT+AGG - chr4.3:40556112-40556131 MS.gene021061:CDS 25.0%
AATTTGTGTATGTCTATTGC+AGG - chr4.3:40556151-40556170 MS.gene021061:CDS 30.0%
ACAGATAAGCTTACAAACAA+TGG - chr4.3:40555362-40555381 MS.gene021061:CDS 30.0%
ACTATGAAACCAATTGCAAT+TGG + chr4.3:40556317-40556336 None:intergenic 30.0%
ATAGGATAGAGTCTATTGTA+AGG - chr4.3:40555791-40555810 MS.gene021061:intron 30.0%
GAATATTCACAACGATACTT+TGG + chr4.3:40555911-40555930 None:intergenic 30.0%
GTAAGGAAATACCTTAACTA+TGG - chr4.3:40555808-40555827 MS.gene021061:intron 30.0%
TAGACTCTATCCTATAGTTT+AGG + chr4.3:40555786-40555805 None:intergenic 30.0%
TTACTTTGTGAACTCTTCTT+GGG - chr4.3:40555326-40555345 MS.gene021061:CDS 30.0%
! ATTGCAATTGGTTTCATAGT+TGG - chr4.3:40556317-40556336 MS.gene021061:intron 30.0%
! CCAATTGCAATTCTAGAAAT+CGG + chr4.3:40555086-40555105 None:intergenic 30.0%
! TCATTAGAGGTCTTTTGTAT+TGG - chr4.3:40555531-40555550 MS.gene021061:intron 30.0%
!! TTTGAGATTGTGATGACTTT+TGG - chr4.3:40556227-40556246 MS.gene021061:CDS 30.0%
ACAATTGCTCCAATTGCAAT+TGG - chr4.3:40556305-40556324 MS.gene021061:intron 35.0%
ATTCTCATTATCTTCTGGTG+TGG - chr4.3:40556184-40556203 MS.gene021061:CDS 35.0%
ATTGGAAATCCTTCTGAGTT+TGG - chr4.3:40555101-40555120 MS.gene021061:CDS 35.0%
CTTAAAGTCGTCCATTTAGT+TGG - chr4.3:40555719-40555738 MS.gene021061:intron 35.0%
CTTACTTTGTGAACTCTTCT+TGG - chr4.3:40555325-40555344 MS.gene021061:CDS 35.0%
TACTTTGTGAACTCTTCTTG+GGG - chr4.3:40555327-40555346 MS.gene021061:CDS 35.0%
TCTGCATTCTCATTATCTTC+TGG - chr4.3:40556179-40556198 MS.gene021061:CDS 35.0%
TTCTCATTATCTTCTGGTGT+GGG - chr4.3:40556185-40556204 MS.gene021061:CDS 35.0%
! CGACTTTAAGAATGCAATTC+AGG + chr4.3:40555709-40555728 None:intergenic 35.0%
!! ATGCTCATTTTTGTCTTTGC+AGG - chr4.3:40555167-40555186 MS.gene021061:CDS 35.0%
!! ATTCAGGTTCTTTTCACGAA+AGG + chr4.3:40555693-40555712 None:intergenic 35.0%
!! CCGATTTCTAGAATTGCAAT+TGG - chr4.3:40555083-40555102 MS.gene021061:CDS 35.0%
!! CTCAAGGATTAGTCTCATAA+CGG - chr4.3:40555750-40555769 MS.gene021061:intron 35.0%
!! GATTGTGATGACTTTTGGTT+TGG - chr4.3:40556232-40556251 MS.gene021061:CDS 35.0%
!! TGCTCATTTTTGTCTTTGCA+GGG - chr4.3:40555168-40555187 MS.gene021061:CDS 35.0%
!!! CTTTTTGTTGCTGTTTCTGT+TGG - chr4.3:40555437-40555456 MS.gene021061:intron 35.0%
!!! TTCCTAGGCTACCATTTTTT+GGG + chr4.3:40556286-40556305 None:intergenic 35.0%
AATCATTGGGTCTATTGGGT+CGG - chr4.3:40556431-40556450 MS.gene021061:CDS 40.0%
ACTGCAGTAGACCCAAAAAA+TGG - chr4.3:40556272-40556291 MS.gene021061:intron 40.0%
ATCGATTGTGTCGAAAGTGA+TGG - chr4.3:40555655-40555674 MS.gene021061:intron 40.0%
ATCTGGCATGGCATATAGTA+AGG - chr4.3:40555196-40555215 MS.gene021061:CDS 40.0%
CAACTGTTCATAAGAGCTAG+GGG + chr4.3:40556510-40556529 None:intergenic 40.0%
CAATAGCAGAACCAATCAAC+GGG + chr4.3:40556457-40556476 None:intergenic 40.0%
CAATTGGAGCAATTGTTCCT+AGG + chr4.3:40556301-40556320 None:intergenic 40.0%
GCAACTGTTCATAAGAGCTA+GGG + chr4.3:40556511-40556530 None:intergenic 40.0%
GCAATAGCAGAACCAATCAA+CGG + chr4.3:40556458-40556477 None:intergenic 40.0%
GGACACATTACACTCATTAG+AGG - chr4.3:40555518-40555537 MS.gene021061:intron 40.0%
GGCTAATCATTGGGTCTATT+GGG - chr4.3:40556427-40556446 MS.gene021061:CDS 40.0%
TAGCTCTTATGAACAGTTGC+CGG - chr4.3:40556511-40556530 MS.gene021061:CDS 40.0%
TATGAGACTAATCCTTGAGC+TGG + chr4.3:40555749-40555768 None:intergenic 40.0%
TATTGGATTGCTCAGTTGCT+TGG - chr4.3:40555548-40555567 MS.gene021061:intron 40.0%
TTGCTCCTTAAAATTGCCAC+TGG - chr4.3:40555587-40555606 MS.gene021061:intron 40.0%
! ATTTTTGTCTTTGCAGGGGA+AGG - chr4.3:40555173-40555192 MS.gene021061:CDS 40.0%
!! GCTCATTTTTGTCTTTGCAG+GGG - chr4.3:40555169-40555188 MS.gene021061:CDS 40.0%
!! TCTGTTGGTGCTAACATTTC+TGG - chr4.3:40555452-40555471 MS.gene021061:intron 40.0%
!!! ACTTTTGGTGCTTTCATTGG+TGG - chr4.3:40555497-40555516 MS.gene021061:intron 40.0%
!!! GTCACTTTTGGTGCTTTCAT+TGG - chr4.3:40555494-40555513 MS.gene021061:intron 40.0%
!!! GTTCCTAGGCTACCATTTTT+TGG + chr4.3:40556287-40556306 None:intergenic 40.0%
AAAAGAAACGGCTGGGTTCA+TGG + chr4.3:40556381-40556400 None:intergenic 45.0%
AACAGCAGGCCCAAAAGAAA+CGG + chr4.3:40556393-40556412 None:intergenic 45.0%
AAGCACCAAAAGTGACAGCA+GGG + chr4.3:40555490-40555509 None:intergenic 45.0%
CTCCTTAAAATTGCCACTGG+TGG - chr4.3:40555590-40555609 MS.gene021061:intron 45.0%
GACCCAAAAAATGGTAGCCT+AGG - chr4.3:40556281-40556300 MS.gene021061:intron 45.0%
GGCAACTGTTCATAAGAGCT+AGG + chr4.3:40556512-40556531 None:intergenic 45.0%
GGGCTAATCATTGGGTCTAT+TGG - chr4.3:40556426-40556445 MS.gene021061:CDS 45.0%
GTTGGAGCTAACATCTTAGC+AGG - chr4.3:40556335-40556354 MS.gene021061:intron 45.0%
TCAGCTTTGCCAAACTCAGA+AGG + chr4.3:40555113-40555132 None:intergenic 45.0%
TGCTGTTGTTAGCTGGACAT+GGG - chr4.3:40556406-40556425 MS.gene021061:intron 45.0%
TGGCAAAGCTGATGCACTTA+AGG - chr4.3:40555121-40555140 MS.gene021061:CDS 45.0%
TTAGCAGGTGGTGCATTTGA+TGG - chr4.3:40556350-40556369 MS.gene021061:intron 45.0%
TTAGTTGGAAGACCAGCTCA+AGG - chr4.3:40555734-40555753 MS.gene021061:intron 45.0%
TTATGAACAGTTGCCGGTCA+CGG - chr4.3:40556517-40556536 MS.gene021061:CDS 45.0%
! AAAGCACCAAAAGTGACAGC+AGG + chr4.3:40555491-40555510 None:intergenic 45.0%
! ATGAACCCAGCCGTTTCTTT+TGG - chr4.3:40556380-40556399 MS.gene021061:intron 45.0%
! CTGGACATGGGCTAATCATT+GGG - chr4.3:40556418-40556437 MS.gene021061:CDS 45.0%
! GTCCACCAGTGGCAATTTTA+AGG + chr4.3:40555595-40555614 None:intergenic 45.0%
! TAAAATTGCCACTGGTGGAC+TGG - chr4.3:40555595-40555614 MS.gene021061:intron 45.0%
! TGAACCCAGCCGTTTCTTTT+GGG - chr4.3:40556381-40556400 MS.gene021061:intron 45.0%
!! GAGCTGGTCTTCCAACTAAA+TGG + chr4.3:40555733-40555752 None:intergenic 45.0%
!! GTTGGTGCTAACATTTCTGG+TGG - chr4.3:40555455-40555474 MS.gene021061:intron 45.0%
!!! GTTAACCCTGCTGTCACTTT+TGG - chr4.3:40555482-40555501 MS.gene021061:intron 45.0%
CATGTCCAGCTAACAACAGC+AGG + chr4.3:40556407-40556426 None:intergenic 50.0%
CTGCTGTTGTTAGCTGGACA+TGG - chr4.3:40556405-40556424 MS.gene021061:intron 50.0%
GGAGCTAACATCTTAGCAGG+TGG - chr4.3:40556338-40556357 MS.gene021061:intron 50.0%
! GCTGGACATGGGCTAATCAT+TGG - chr4.3:40556417-40556436 MS.gene021061:CDS 50.0%
AATGGTGCAGCAACACCAGC+AGG - chr4.3:40555380-40555399 MS.gene021061:CDS 55.0%
ATGGTGCAGCAACACCAGCA+GGG - chr4.3:40555381-40555400 MS.gene021061:CDS 55.0%
CAGGCCCAAAAGAAACGGCT+GGG + chr4.3:40556388-40556407 None:intergenic 55.0%
GTCTTTGCAGGGGAAGGATC+TGG - chr4.3:40555179-40555198 MS.gene021061:CDS 55.0%
GTTTCTCACCAGTCCACCAG+TGG + chr4.3:40555606-40555625 None:intergenic 55.0%
TATTGGGTCGGCCCGTTGAT+TGG - chr4.3:40556443-40556462 MS.gene021061:CDS 55.0%
TTGGGCCTGCTGTTGTTAGC+TGG - chr4.3:40556399-40556418 MS.gene021061:intron 55.0%
GATGCAGCTACCAACCCTGC+TGG + chr4.3:40555398-40555417 None:intergenic 60.0%
GCAGGCCCAAAAGAAACGGC+TGG + chr4.3:40556389-40556408 None:intergenic 60.0%
TGCAGCAACACCAGCAGGGT+TGG - chr4.3:40555385-40555404 MS.gene021061:CDS 60.0%
TGCAGGGGAAGGATCTGGCA+TGG - chr4.3:40555184-40555203 MS.gene021061:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 40555080 40556547 40555080 ID=MS.gene021061
chr4.3 mRNA 40555080 40556547 40555080 ID=MS.gene021061.t1;Parent=MS.gene021061
chr4.3 exon 40556415 40556547 40556415 ID=MS.gene021061.t1.exon1;Parent=MS.gene021061.t1
chr4.3 CDS 40556415 40556547 40556415 ID=cds.MS.gene021061.t1;Parent=MS.gene021061.t1
chr4.3 exon 40556011 40556261 40556011 ID=MS.gene021061.t1.exon2;Parent=MS.gene021061.t1
chr4.3 CDS 40556011 40556261 40556011 ID=cds.MS.gene021061.t1;Parent=MS.gene021061.t1
chr4.3 exon 40555080 40555454 40555080 ID=MS.gene021061.t1.exon3;Parent=MS.gene021061.t1
chr4.3 CDS 40555080 40555454 40555080 ID=cds.MS.gene021061.t1;Parent=MS.gene021061.t1
Gene Sequence

>MS.gene021061

ATGCCGATTTCTAGAATTGCAATTGGAAATCCTTCTGAGTTTGGCAAAGCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATTTCAATGCTCATTTTTGTCTTTGCAGGGGAAGGATCTGGCATGGCATATAGTAAGGCTTTTTATTAGTTAATTAAACTCTTTCCGAAAATTTTCGATTTAACTTATTTGAGTTTATCTACTGACATAAACATTGTGTAACTATTTCAAAAAACTGTTTTCAACTTACTTTGTGAACTCTTCTTGGGGTGTGTTTTTTTGACAGATAAGCTTACAAACAATGGTGCAGCAACACCAGCAGGGTTGGTAGCTGCATCACTATCACATGCATTTGCACTTTTTGTTGCTGTTTCTGTTGGTGCTAACATTTCTGGTGGACATGTTAACCCTGCTGTCACTTTTGGTGCTTTCATTGGTGGACACATTACACTCATTAGAGGTCTTTTGTATTGGATTGCTCAGTTGCTTGGTTCTGTTGTTGCTTGCTTGCTCCTTAAAATTGCCACTGGTGGACTGGTGAGAAACATTACATATATTCTTTCATTCTAAATTGAATCGATTGTGTCGAAAGTGATGGTAACATGACTTTCCTTTCGTGAAAAGAACCTGAATTGCATTCTTAAAGTCGTCCATTTAGTTGGAAGACCAGCTCAAGGATTAGTCTCATAACGGATCTAAATAACCTAAACTATAGGATAGAGTCTATTGTAAGGAAATACCTTAACTATGGTTGAAAATAAAAAAAATTCAATCACATTAAGACTAAATTCACTATCCAAAATTTCAATGTGATAAAATATTTTTAGTCCAAAGTATCGTTGTGAATATTCGTTAATTTCTTTCAAAGACCAAATTGTTTTATGCTTATAATTTCGGTAACAAAAGGTAAAATAAAGTCAAAAAAATTTCATACGAAATTTAGTTTCTTCAAAAAAAAAAAAAATTTCATACGATTTGTTTCAAAGTATCATTTTAGATTCACATGTTAGTTATTACAATGATTGTGTTCTTGCAACTTAACTTTTCTTTTTAGGGCTGAATTTTATTATGAATTTGTGTATGTCTATTGCAGGAAACATCTGCATTCTCATTATCTTCTGGTGTGGGAGCAACAAATGCACTTGTGTTTGAGATTGTGATGACTTTTGGTTTGGTCTACACAGTGTATGCTACTGCAGTAGACCCAAAAAATGGTAGCCTAGGAACAATTGCTCCAATTGCAATTGGTTTCATAGTTGGAGCTAACATCTTAGCAGGTGGTGCATTTGATGGTGCATCCATGAACCCAGCCGTTTCTTTTGGGCCTGCTGTTGTTAGCTGGACATGGGCTAATCATTGGGTCTATTGGGTCGGCCCGTTGATTGGTTCTGCTATTGCTGCAGTTGTCTATGAGACTTTCTTTATCACCCCTAGCTCTTATGAACAGTTGCCGGTCACGGATTATTAA
Protein sequence

>MS.gene021061.t1

MPISRIAIGNPSEFGKADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLIRGLLYWIAQLLGSVVACLLLKIATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPLIGSAIAAVVYETFFITPSSYEQLPVTDY