AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004088.t1 MTR_4g063090 100.000 252 0 0 1 252 1 252 9.90e-179 491
MS.gene004088.t1 MTR_7g023350 78.175 252 55 0 1 252 1 252 3.79e-132 373
MS.gene004088.t1 MTR_1g115405 74.206 252 65 0 1 252 1 252 1.38e-130 369
MS.gene004088.t1 MTR_7g103030 74.603 252 62 2 1 252 1 250 7.43e-120 342
MS.gene004088.t1 MTR_2g101370 65.289 242 83 1 6 247 5 245 6.78e-101 294
MS.gene004088.t1 MTR_8g013680 61.066 244 86 2 14 251 6 246 8.27e-97 283
MS.gene004088.t1 MTR_1g077540 53.101 258 115 1 1 252 1 258 1.49e-95 281
MS.gene004088.t1 MTR_6g069040 54.902 255 112 1 1 252 1 255 2.56e-90 267
MS.gene004088.t1 MTR_5g012810 59.677 248 97 2 5 252 3 247 1.90e-85 254
MS.gene004088.t1 MTR_1g006490 54.008 237 105 2 3 239 1 233 7.86e-85 253
MS.gene004088.t1 MTR_1g006590 51.020 245 116 2 3 247 1 241 3.77e-81 244
MS.gene004088.t1 MTR_2g060360 44.037 218 121 1 18 235 16 232 8.69e-58 184
MS.gene004088.t1 MTR_2g094270 36.475 244 130 6 12 235 31 269 4.41e-39 137
MS.gene004088.t1 MTR_7g101190 37.344 241 135 6 10 235 28 267 3.10e-37 132
MS.gene004088.t1 MTR_3g118010 36.975 238 135 6 21 247 37 270 4.16e-35 127
MS.gene004088.t1 MTR_8g098375 33.613 238 143 5 10 235 41 275 3.68e-32 119
MS.gene004088.t1 MTR_4g059390 34.156 243 136 6 12 235 30 267 4.00e-32 119
MS.gene004088.t1 MTR_5g063930 35.021 237 136 4 18 245 34 261 8.10e-31 115
MS.gene004088.t1 MTR_1g095070 41.237 194 93 6 69 247 25 212 1.42e-30 113
MS.gene004088.t1 MTR_4g415300 34.914 232 125 7 21 235 56 278 2.92e-30 114
MS.gene004088.t1 MTR_3g070210 33.610 241 137 6 10 234 44 277 3.52e-30 114
MS.gene004088.t1 MTR_5g010150 32.773 238 145 5 10 235 41 275 7.35e-30 113
MS.gene004088.t1 MTR_5g082070 33.333 237 143 5 10 234 44 277 3.15e-29 111
MS.gene004088.t1 MTR_2g094270 35.814 215 116 5 12 209 31 240 2.12e-28 109
MS.gene004088.t1 MTR_4g084880 33.188 229 146 4 20 247 34 256 5.44e-26 102
MS.gene004088.t1 MTR_2g017620 34.061 229 142 5 20 247 23 243 6.69e-26 102
MS.gene004088.t1 MTR_2g017620 34.061 229 142 5 20 247 37 257 1.13e-25 102
MS.gene004088.t1 MTR_2g017590 33.624 229 143 5 20 247 35 255 3.64e-24 97.8
MS.gene004088.t1 MTR_2g017620 37.427 171 103 3 78 247 9 176 7.25e-24 95.1
MS.gene004088.t1 MTR_3g008920 36.073 219 126 6 20 235 25 232 1.07e-23 96.7
MS.gene004088.t1 MTR_5g079570 33.182 220 131 6 20 235 39 246 1.16e-22 94.0
MS.gene004088.t1 MTR_2g104940 33.498 203 127 4 25 227 84 278 2.09e-22 94.0
MS.gene004088.t1 MTR_1g070385 28.972 214 144 4 21 234 62 267 2.68e-22 95.9
MS.gene004088.t1 MTR_7g010650 31.780 236 145 6 21 250 37 262 9.05e-22 91.7
MS.gene004088.t1 MTR_8g087710 32.314 229 146 5 20 247 38 258 1.03e-21 91.7
MS.gene004088.t1 MTR_2g017660 29.365 252 167 5 1 248 16 260 4.82e-21 89.7
MS.gene004088.t1 MTR_8g087720 32.530 249 150 7 8 251 21 256 8.81e-21 89.0
MS.gene004088.t1 MTR_1g095070 40.491 163 77 5 69 216 25 182 1.21e-20 86.7
MS.gene004088.t1 MTR_3g070210 31.416 226 132 6 10 219 44 262 1.54e-20 88.6
MS.gene004088.t1 MTR_4g006730 31.401 207 134 3 21 227 75 273 3.89e-20 87.8
MS.gene004088.t1 MTR_1g097840 33.180 217 123 8 25 234 78 279 1.83e-19 85.9
MS.gene004088.t1 MTR_2g017610 31.760 233 145 7 20 251 37 256 5.25e-19 84.0
MS.gene004088.t1 MTR_2g017570 31.760 233 145 7 20 251 37 256 7.12e-19 83.6
MS.gene004088.t1 MTR_4g059390 32.778 180 104 5 12 179 30 204 4.89e-18 80.1
MS.gene004088.t1 MTR_4g006730 30.412 194 127 3 34 227 1 186 1.87e-17 79.0
MS.gene004088.t1 MTR_4g006630 30.412 194 127 3 34 227 1 186 2.20e-17 78.6
MS.gene004088.t1 MTR_8g098375 30.337 178 116 3 10 182 41 215 5.43e-17 77.8
MS.gene004088.t1 MTR_4g415300 33.136 169 94 5 21 179 56 215 1.79e-16 76.3
MS.gene004088.t1 MTR_3g070210 30.899 178 107 4 10 178 44 214 6.15e-16 74.7
MS.gene004088.t1 MTR_5g010150 30.286 175 114 3 10 179 41 212 1.52e-15 73.6
MS.gene004088.t1 MTR_4g075570 27.624 181 109 4 69 229 96 274 2.46e-13 68.9
MS.gene004088.t1 MTR_4g075590 27.004 237 148 6 13 229 29 260 3.00e-13 68.6
MS.gene004088.t1 MTR_8g468730 34.545 110 49 4 137 246 2 88 7.18e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004088.t1 AT2G36830 80.159 252 49 1 1 252 1 251 1.49e-142 399
MS.gene004088.t1 AT4G01470 78.175 252 55 0 1 252 1 252 4.31e-140 393
MS.gene004088.t1 AT3G26520 75.889 253 60 1 1 252 1 253 4.81e-133 375
MS.gene004088.t1 AT5G47450 60.729 247 95 1 5 251 3 247 3.55e-96 282
MS.gene004088.t1 AT3G16240 58.400 250 104 0 3 252 1 250 6.15e-95 279
MS.gene004088.t1 AT1G73190 58.750 240 93 2 9 243 12 250 2.87e-91 270
MS.gene004088.t1 AT1G17810 58.264 242 95 2 9 245 12 252 6.64e-89 264
MS.gene004088.t1 AT4G17340 59.919 247 97 1 5 251 3 247 2.35e-86 257
MS.gene004088.t1 AT2G25810 53.414 249 109 3 3 251 1 242 3.10e-80 241
MS.gene004088.t1 AT3G47440 43.379 219 123 1 18 236 20 237 1.50e-53 174
MS.gene004088.t1 AT2G37170 37.209 258 139 8 11 247 21 276 1.10e-36 131
MS.gene004088.t1 AT3G53420 37.849 251 139 7 12 247 30 278 1.45e-36 131
MS.gene004088.t1 AT3G53420 37.849 251 139 7 12 247 30 278 1.45e-36 131
MS.gene004088.t1 AT2G37170 37.209 258 139 8 11 247 64 319 1.58e-36 132
MS.gene004088.t1 AT3G54820 35.270 241 140 5 10 235 27 266 1.99e-35 128
MS.gene004088.t1 AT2G37180 36.328 256 140 8 10 247 26 276 7.40e-35 126
MS.gene004088.t1 AT2G39010 35.510 245 130 7 12 235 29 266 1.37e-34 125
MS.gene004088.t1 AT4G35100 36.555 238 136 6 21 247 38 271 1.54e-34 125
MS.gene004088.t1 AT4G35100 36.555 238 136 6 21 247 38 271 1.54e-34 125
MS.gene004088.t1 AT5G60660 35.458 251 145 7 12 247 30 278 2.62e-34 125
MS.gene004088.t1 AT2G16850 35.714 238 138 6 21 247 36 269 6.93e-33 121
MS.gene004088.t1 AT4G00430 34.156 243 134 7 10 235 42 275 2.07e-30 115
MS.gene004088.t1 AT4G23400 34.483 232 126 6 21 235 53 275 1.82e-29 112
MS.gene004088.t1 AT3G61430 35.498 231 123 7 21 234 52 273 1.09e-28 110
MS.gene004088.t1 AT3G61430 35.498 231 123 7 21 234 52 273 1.09e-28 110
MS.gene004088.t1 AT1G01620 34.483 232 126 7 21 235 52 274 1.10e-28 110
MS.gene004088.t1 AT2G45960 34.298 242 133 7 10 234 41 273 2.41e-28 109
MS.gene004088.t1 AT1G01620 38.043 184 90 6 69 235 26 202 2.66e-26 102
MS.gene004088.t1 AT1G52180 56.627 83 36 0 134 216 42 124 2.09e-23 92.0
MS.gene004088.t1 AT1G80760 32.579 221 140 5 25 245 84 295 1.54e-22 94.4
MS.gene004088.t1 AT4G19030 30.196 255 156 6 8 247 34 281 1.05e-21 92.0
MS.gene004088.t1 AT5G37810 31.278 227 149 3 21 247 43 262 2.90e-21 90.5
MS.gene004088.t1 AT5G37820 30.350 257 160 5 3 247 13 262 5.75e-21 89.7
MS.gene004088.t1 AT5G37820 30.350 257 160 5 3 247 49 298 1.07e-20 89.4
MS.gene004088.t1 AT2G39010 33.149 181 100 5 12 178 29 202 9.37e-20 85.1
MS.gene004088.t1 AT4G18910 29.237 236 151 6 20 247 51 278 2.68e-19 85.5
MS.gene004088.t1 AT1G31885 29.661 236 150 4 20 247 42 269 5.41e-19 84.7
MS.gene004088.t1 AT2G45960 32.143 224 126 7 10 216 41 255 1.17e-18 83.2
MS.gene004088.t1 AT2G45960 32.143 224 126 7 10 216 41 255 1.34e-18 83.6
MS.gene004088.t1 AT4G10380 31.628 215 129 5 25 234 82 283 1.79e-18 83.2
MS.gene004088.t1 AT3G06100 27.397 219 152 4 18 236 43 254 2.48e-18 82.4
MS.gene004088.t1 AT1G31885 33.708 178 107 3 78 247 41 215 3.02e-18 82.0
MS.gene004088.t1 AT3G06100 27.700 213 147 4 24 236 1 206 3.28e-17 78.6
MS.gene004088.t1 AT4G00430 32.022 178 102 5 10 177 42 210 3.15e-15 72.8
MS.gene004088.t1 AT3G06100 31.061 132 89 2 105 236 44 173 1.92e-13 67.4

Find 60 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTGGTGCTAACATTTC+TGG 0.108507 4.2:-42055572 MS.gene004088:CDS
GGGCTAATCATTGGGTCTAT+TGG 0.263332 4.2:-42054621 MS.gene004088:CDS
ATGAACCCAGCAGTTTCTTT+TGG 0.263396 4.2:-42054667 MS.gene004088:CDS
GTTAACCCTGCTGTCACTTT+TGG 0.284147 4.2:-42055542 MS.gene004088:CDS
ATTGGAAATCCTTCTGAGTT+TGG 0.293211 4.2:-42055923 MS.gene004088:CDS
TTTGAGATTGTGATGACTTT+TGG 0.309198 4.2:-42054820 MS.gene004088:CDS
TATTGGGTCGGCCCGTTGAT+TGG 0.316776 4.2:-42054604 MS.gene004088:CDS
TTACCGGTCACGGATTATTA+AGG 0.336094 4.2:-42054520 None:intergenic
ATTGCAATTGGTTTCATAGT+TGG 0.339661 4.2:-42054730 MS.gene004088:CDS
CTGCTGTTGTTAGCTGGACA+TGG 0.355517 4.2:-42054642 MS.gene004088:CDS
AAAAGAAACTGCTGGGTTCA+TGG 0.357172 4.2:+42054669 None:intergenic
CCAATTGCAATTCTAGAAAT+CGG 0.358019 4.2:+42055941 None:intergenic
CCGATTTCTAGAATTGCAAT+TGG 0.370439 4.2:-42055941 MS.gene004088:CDS
TTGGGCCTGCTGTTGTTAGC+TGG 0.373980 4.2:-42054648 MS.gene004088:CDS
GTCTTTGCAGGGGAAGGATC+TGG 0.376047 4.2:-42055845 MS.gene004088:CDS
TGGCAAAGCTGATGCACTTA+AGG 0.381290 4.2:-42055903 MS.gene004088:CDS
GCTGGACATGGGCTAATCAT+TGG 0.392902 4.2:-42054630 MS.gene004088:CDS
TCTGCATTCTCATTATCTTC+TGG 0.394809 4.2:-42054868 MS.gene004088:CDS
GGCTAATCATTGGGTCTATT+GGG 0.404201 4.2:-42054620 MS.gene004088:CDS
TATTGGATTGCTCAGTTGCT+TGG 0.424094 4.2:-42055476 MS.gene004088:CDS
ACAATTGCTCCAATTGCAAT+TGG 0.427440 4.2:-42054742 MS.gene004088:CDS
TTAGCAGGTGGTGCATTTGA+TGG 0.429164 4.2:-42054697 MS.gene004088:CDS
TAGCTCTTATGAACAGTTAC+CGG 0.430523 4.2:-42054536 MS.gene004088:CDS
CAGATAAGCTTACAAACAAT+GGG 0.442682 4.2:-42055661 MS.gene004088:CDS
TTCTCATTATCTTCTGGTGT+GGG 0.456268 4.2:-42054862 MS.gene004088:CDS
ACTATGAAACCAATTGCAAT+TGG 0.458046 4.2:+42054733 None:intergenic
GGACACATTACACTCATTAG+AGG 0.466243 4.2:-42055506 MS.gene004088:CDS
CTGGACATGGGCTAATCATT+GGG 0.474402 4.2:-42054629 MS.gene004088:CDS
AATGGGGCAGCAACACCAGC+AGG 0.497841 4.2:-42055644 MS.gene004088:CDS
ACAGATAAGCTTACAAACAA+TGG 0.498314 4.2:-42055662 MS.gene004088:intron
GCAGGCCCAAAAGAAACTGC+TGG 0.500317 4.2:+42054661 None:intergenic
CAATAGCAGAACCAATCAAC+GGG 0.504842 4.2:+42054593 None:intergenic
TAAAATTGCCACTGGTGGAC+TGG 0.504856 4.2:-42055429 MS.gene004088:intron
CTCCTTAAAATTGCCACTGG+TGG 0.510876 4.2:-42055434 MS.gene004088:CDS
TTGCTCCTTAAAATTGCCAC+TGG 0.517240 4.2:-42055437 MS.gene004088:CDS
GGTAACTGTTCATAAGAGCT+AGG 0.525678 4.2:+42054538 None:intergenic
CAATTGGAGCAATTGTTCCC+AGG 0.528182 4.2:+42054749 None:intergenic
GTTGGAGCTAACATCTTAGC+AGG 0.528561 4.2:-42054712 MS.gene004088:CDS
CATGTCCAGCTAACAACAGC+AGG 0.530958 4.2:+42054643 None:intergenic
GGCAGCAACACCAGCAGGGT+TGG 0.532142 4.2:-42055639 MS.gene004088:CDS
ACTGAGCAATCCAATACAAA+AGG 0.532220 4.2:+42055483 None:intergenic
AAAGCACCAAAAGTGACAGC+AGG 0.532536 4.2:+42055536 None:intergenic
GTAACTGTTCATAAGAGCTA+GGG 0.532887 4.2:+42054539 None:intergenic
TGCTGTTGTTAGCTGGACAT+GGG 0.535749 4.2:-42054641 MS.gene004088:CDS
ATTCTCATTATCTTCTGGTG+TGG 0.543635 4.2:-42054863 MS.gene004088:CDS
TTATGAACAGTTACCGGTCA+CGG 0.547163 4.2:-42054530 MS.gene004088:CDS
AGGCCTTAATAATCCGTGAC+CGG 0.557820 4.2:+42054517 None:intergenic
GATGCTGCTACCAACCCTGC+TGG 0.563647 4.2:+42055629 None:intergenic
AATCATTGGGTCTATTGGGT+CGG 0.564922 4.2:-42054616 MS.gene004088:CDS
TCAGCTTTGCCAAACTCAGA+AGG 0.564993 4.2:+42055914 None:intergenic
GTTGGTGCTAACATTTCTGG+TGG 0.567619 4.2:-42055569 MS.gene004088:CDS
GCAATAGCAGAACCAATCAA+CGG 0.595929 4.2:+42054592 None:intergenic
CAGGCCCAAAAGAAACTGCT+GGG 0.603420 4.2:+42054662 None:intergenic
TGCAGGGGAAGGATCTGGCA+TGG 0.613277 4.2:-42055840 MS.gene004088:CDS
GTTTCTCACCAGTCCACCAG+TGG 0.659307 4.2:+42055421 None:intergenic
AAGCACCAAAAGTGACAGCA+GGG 0.671108 4.2:+42055537 None:intergenic
TAACTGTTCATAAGAGCTAG+GGG 0.686347 4.2:+42054540 None:intergenic
GGAGCTAACATCTTAGCAGG+TGG 0.688136 4.2:-42054709 MS.gene004088:CDS
ATGGGGCAGCAACACCAGCA+GGG 0.697136 4.2:-42055643 MS.gene004088:CDS
AGATAAGCTTACAAACAATG+GGG 0.764420 4.2:-42055660 MS.gene004088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATCAATCACATT+AGG - chr4.2:42055285-42055304 MS.gene004088:intron 15.0%
!! GAAAGTTAAGTAAAAAAATA+AGG + chr4.2:42055524-42055543 None:intergenic 15.0%
!!! TAAGTTAAATCGAAAATTTT+CGG + chr4.2:42054690-42054709 None:intergenic 15.0%
!!! TTGTTTTATGCTTATAATTT+CGG - chr4.2:42055400-42055419 MS.gene004088:intron 15.0%
!! ATCTAAATAACCTAAACTAT+AGG - chr4.2:42055216-42055235 MS.gene004088:intron 20.0%
!!! ATTTGATCACATTGAAATTT+TGG + chr4.2:42055325-42055344 None:intergenic 20.0%
!!! TGCTGAATTTTAGTATTAAT+TGG - chr4.2:42055553-42055572 MS.gene004088:CDS 20.0%
! GTAATGAAATACCTTAACTA+TGG - chr4.2:42055251-42055270 MS.gene004088:intron 25.0%
!!! TTTATTTTCGACCATAGTTA+AGG + chr4.2:42055265-42055284 None:intergenic 25.0%
ACAGATAAGCTTACAAACAA+TGG - chr4.2:42054804-42054823 MS.gene004088:CDS 30.0%
ACTATGAAACCAATTGCAAT+TGG + chr4.2:42055736-42055755 None:intergenic 30.0%
AGATAAGCTTACAAACAATG+GGG - chr4.2:42054806-42054825 MS.gene004088:CDS 30.0%
CAGATAAGCTTACAAACAAT+GGG - chr4.2:42054805-42054824 MS.gene004088:CDS 30.0%
CTAAATTGAATCCATTGTGT+CGG - chr4.2:42055090-42055109 MS.gene004088:intron 30.0%
TAGACTCTATCCTATAGTTT+AGG + chr4.2:42055229-42055248 None:intergenic 30.0%
TTACTTTGTGAACTCTTCTT+GGG - chr4.2:42054769-42054788 MS.gene004088:CDS 30.0%
! ATTGCAATTGGTTTCATAGT+TGG - chr4.2:42055736-42055755 MS.gene004088:intron 30.0%
! CCAATTGCAATTCTAGAAAT+CGG + chr4.2:42054528-42054547 None:intergenic 30.0%
!! TTTGAGATTGTGATGACTTT+TGG - chr4.2:42055646-42055665 MS.gene004088:CDS 30.0%
AATTGGTGTATGTCTATTGC+AGG - chr4.2:42055570-42055589 MS.gene004088:CDS 35.0%
ACAATTGCTCCAATTGCAAT+TGG - chr4.2:42055724-42055743 MS.gene004088:intron 35.0%
ACTGAGCAATCCAATACAAA+AGG + chr4.2:42054986-42055005 None:intergenic 35.0%
ACTGCAGTAGATCCAAAAAA+TGG - chr4.2:42055691-42055710 MS.gene004088:intron 35.0%
ATTCTCATTATCTTCTGGTG+TGG - chr4.2:42055603-42055622 MS.gene004088:CDS 35.0%
ATTGGAAATCCTTCTGAGTT+TGG - chr4.2:42054543-42054562 MS.gene004088:CDS 35.0%
CTTACTTTGTGAACTCTTCT+TGG - chr4.2:42054768-42054787 MS.gene004088:CDS 35.0%
GTAACTGTTCATAAGAGCTA+GGG + chr4.2:42055930-42055949 None:intergenic 35.0%
TAAATAGACGACTTCAGGAA+TGG + chr4.2:42055160-42055179 None:intergenic 35.0%
TAACTGTTCATAAGAGCTAG+GGG + chr4.2:42055929-42055948 None:intergenic 35.0%
TACTTTGTGAACTCTTCTTG+GGG - chr4.2:42054770-42054789 MS.gene004088:CDS 35.0%
TAGCTCTTATGAACAGTTAC+CGG - chr4.2:42055930-42055949 MS.gene004088:CDS 35.0%
TCTGCATTCTCATTATCTTC+TGG - chr4.2:42055598-42055617 MS.gene004088:CDS 35.0%
TTCTCATTATCTTCTGGTGT+GGG - chr4.2:42055604-42055623 MS.gene004088:CDS 35.0%
! TCATTAGAGGCCTTTTGTAT+TGG - chr4.2:42054973-42054992 MS.gene004088:intron 35.0%
!! ATGCTCATTTTTGTCTTTGC+AGG - chr4.2:42054609-42054628 MS.gene004088:CDS 35.0%
!! CCGATTTCTAGAATTGCAAT+TGG - chr4.2:42054525-42054544 MS.gene004088:CDS 35.0%
!! GATTGTGATGACTTTTGGTT+TGG - chr4.2:42055651-42055670 MS.gene004088:CDS 35.0%
!! TGCTCATTTTTGTCTTTGCA+GGG - chr4.2:42054610-42054629 MS.gene004088:CDS 35.0%
!! TTCGAGGATTAGTCTCATAA+CGG - chr4.2:42055193-42055212 MS.gene004088:intron 35.0%
!!! CTTTTTGTTGCTGTTTCTGT+TGG - chr4.2:42054879-42054898 MS.gene004088:intron 35.0%
AAAAGAAACTGCTGGGTTCA+TGG + chr4.2:42055800-42055819 None:intergenic 40.0%
AATCATTGGGTCTATTGGGT+CGG - chr4.2:42055850-42055869 MS.gene004088:CDS 40.0%
AGATCCAAAAAATGGTAGCC+TGG - chr4.2:42055699-42055718 MS.gene004088:intron 40.0%
ATCTGGCATGGCATATAGTA+AGG - chr4.2:42054638-42054657 MS.gene004088:CDS 40.0%
CAATAGCAGAACCAATCAAC+GGG + chr4.2:42055876-42055895 None:intergenic 40.0%
CCAACTAAATAGACGACTTC+AGG + chr4.2:42055165-42055184 None:intergenic 40.0%
CCTGAAGTCGTCTATTTAGT+TGG - chr4.2:42055162-42055181 MS.gene004088:intron 40.0%
GATCCAAAAAATGGTAGCCT+GGG - chr4.2:42055700-42055719 MS.gene004088:intron 40.0%
GCAATAGCAGAACCAATCAA+CGG + chr4.2:42055877-42055896 None:intergenic 40.0%
GGACACATTACACTCATTAG+AGG - chr4.2:42054960-42054979 MS.gene004088:intron 40.0%
GGCTAATCATTGGGTCTATT+GGG - chr4.2:42055846-42055865 MS.gene004088:CDS 40.0%
GGTAACTGTTCATAAGAGCT+AGG + chr4.2:42055931-42055950 None:intergenic 40.0%
TATTGGATTGCTCAGTTGCT+TGG - chr4.2:42054990-42055009 MS.gene004088:intron 40.0%
TTAGTTGGCAGATCAATTCG+AGG - chr4.2:42055177-42055196 MS.gene004088:intron 40.0%
TTATGAACAGTTACCGGTCA+CGG - chr4.2:42055936-42055955 MS.gene004088:CDS 40.0%
TTGCTCCTTAAAATTGCCAC+TGG - chr4.2:42055029-42055048 MS.gene004088:intron 40.0%
! ATGAACCCAGCAGTTTCTTT+TGG - chr4.2:42055799-42055818 MS.gene004088:intron 40.0%
! ATTTTTGTCTTTGCAGGGGA+AGG - chr4.2:42054615-42054634 MS.gene004088:CDS 40.0%
! TGAACCCAGCAGTTTCTTTT+GGG - chr4.2:42055800-42055819 MS.gene004088:intron 40.0%
!! GCTCATTTTTGTCTTTGCAG+GGG - chr4.2:42054611-42054630 MS.gene004088:CDS 40.0%
!! TCTGTTGGTGCTAACATTTC+TGG - chr4.2:42054894-42054913 MS.gene004088:intron 40.0%
!!! ACTTTTGGTGCTTTCATTGG+TGG - chr4.2:42054939-42054958 MS.gene004088:intron 40.0%
!!! GTCACTTTTGGTGCTTTCAT+TGG - chr4.2:42054936-42054955 MS.gene004088:intron 40.0%
AAGCACCAAAAGTGACAGCA+GGG + chr4.2:42054932-42054951 None:intergenic 45.0%
ACGACTTCAGGAATGGAACT+CGG + chr4.2:42055153-42055172 None:intergenic 45.0%
ATCCATTGTGTCGGAAGTGA+TGG - chr4.2:42055099-42055118 MS.gene004088:intron 45.0%
ATGGTAGCATGACTTTCCCT+CGG - chr4.2:42055118-42055137 MS.gene004088:intron 45.0%
CAATTGGAGCAATTGTTCCC+AGG + chr4.2:42055720-42055739 None:intergenic 45.0%
CTCCTTAAAATTGCCACTGG+TGG - chr4.2:42055032-42055051 MS.gene004088:intron 45.0%
GGGCTAATCATTGGGTCTAT+TGG - chr4.2:42055845-42055864 MS.gene004088:CDS 45.0%
GTTGGAGCTAACATCTTAGC+AGG - chr4.2:42055754-42055773 MS.gene004088:intron 45.0%
TACCATCACTTCCGACACAA+TGG + chr4.2:42055104-42055123 None:intergenic 45.0%
TCAGCTTTGCCAAACTCAGA+AGG + chr4.2:42054555-42054574 None:intergenic 45.0%
TGCTGTTGTTAGCTGGACAT+GGG - chr4.2:42055825-42055844 MS.gene004088:intron 45.0%
TGGCAAAGCTGATGCACTTA+AGG - chr4.2:42054563-42054582 MS.gene004088:CDS 45.0%
TTAGCAGGTGGTGCATTTGA+TGG - chr4.2:42055769-42055788 MS.gene004088:intron 45.0%
! AAAGCACCAAAAGTGACAGC+AGG + chr4.2:42054933-42054952 None:intergenic 45.0%
! CTGGACATGGGCTAATCATT+GGG - chr4.2:42055837-42055856 MS.gene004088:CDS 45.0%
! GTCCACCAGTGGCAATTTTA+AGG + chr4.2:42055037-42055056 None:intergenic 45.0%
! TAAAATTGCCACTGGTGGAC+TGG - chr4.2:42055037-42055056 MS.gene004088:intron 45.0%
!! GTTGGTGCTAACATTTCTGG+TGG - chr4.2:42054897-42054916 MS.gene004088:intron 45.0%
!!! GTTAACCCTGCTGTCACTTT+TGG - chr4.2:42054924-42054943 MS.gene004088:intron 45.0%
!!! GTTCCCAGGCTACCATTTTT+TGG + chr4.2:42055706-42055725 None:intergenic 45.0%
AACTCGGGTTCTTTACCCGA+GGG + chr4.2:42055137-42055156 None:intergenic 50.0%
CAGGCCCAAAAGAAACTGCT+GGG + chr4.2:42055807-42055826 None:intergenic 50.0%
CATGTCCAGCTAACAACAGC+AGG + chr4.2:42055826-42055845 None:intergenic 50.0%
CGACTTCAGGAATGGAACTC+GGG + chr4.2:42055152-42055171 None:intergenic 50.0%
CTGCTGTTGTTAGCTGGACA+TGG - chr4.2:42055824-42055843 MS.gene004088:intron 50.0%
GGAGCTAACATCTTAGCAGG+TGG - chr4.2:42055757-42055776 MS.gene004088:intron 50.0%
TGGTAGCATGACTTTCCCTC+GGG - chr4.2:42055119-42055138 MS.gene004088:intron 50.0%
! GCTGGACATGGGCTAATCAT+TGG - chr4.2:42055836-42055855 MS.gene004088:CDS 50.0%
GAACTCGGGTTCTTTACCCG+AGG + chr4.2:42055138-42055157 None:intergenic 55.0%
GCAGGCCCAAAAGAAACTGC+TGG + chr4.2:42055808-42055827 None:intergenic 55.0%
GTCTTTGCAGGGGAAGGATC+TGG - chr4.2:42054621-42054640 MS.gene004088:CDS 55.0%
GTTTCTCACCAGTCCACCAG+TGG + chr4.2:42055048-42055067 None:intergenic 55.0%
TATTGGGTCGGCCCGTTGAT+TGG - chr4.2:42055862-42055881 MS.gene004088:CDS 55.0%
TTGGGCCTGCTGTTGTTAGC+TGG - chr4.2:42055818-42055837 MS.gene004088:intron 55.0%
AATGGGGCAGCAACACCAGC+AGG - chr4.2:42054822-42054841 MS.gene004088:CDS 60.0%
ATGGGGCAGCAACACCAGCA+GGG - chr4.2:42054823-42054842 MS.gene004088:CDS 60.0%
GATGCTGCTACCAACCCTGC+TGG + chr4.2:42054840-42054859 None:intergenic 60.0%
TGCAGGGGAAGGATCTGGCA+TGG - chr4.2:42054626-42054645 MS.gene004088:CDS 60.0%
GGCAGCAACACCAGCAGGGT+TGG - chr4.2:42054827-42054846 MS.gene004088:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 42054522 42055966 42054522 ID=MS.gene004088
chr4.2 mRNA 42054522 42055966 42054522 ID=MS.gene004088.t1;Parent=MS.gene004088
chr4.2 exon 42055834 42055966 42055834 ID=MS.gene004088.t1.exon1;Parent=MS.gene004088.t1
chr4.2 CDS 42055834 42055966 42055834 ID=cds.MS.gene004088.t1;Parent=MS.gene004088.t1
chr4.2 exon 42055430 42055680 42055430 ID=MS.gene004088.t1.exon2;Parent=MS.gene004088.t1
chr4.2 CDS 42055430 42055680 42055430 ID=cds.MS.gene004088.t1;Parent=MS.gene004088.t1
chr4.2 exon 42054522 42054896 42054522 ID=MS.gene004088.t1.exon3;Parent=MS.gene004088.t1
chr4.2 CDS 42054522 42054896 42054522 ID=cds.MS.gene004088.t1;Parent=MS.gene004088.t1
Gene Sequence

>MS.gene004088

ATGCCGATTTCTAGAATTGCAATTGGAAATCCTTCTGAGTTTGGCAAAGCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATTTCAATGCTCATTTTTGTCTTTGCAGGGGAAGGATCTGGCATGGCATATAGTAAGGCTTTTTATTAGTTAATTAAACTCTTTCCGAAAATTTTCGATTTAACTTATTTGAGTTTATCTACTGACATAAACAATTGTGTAACTATTTCAAAAAACTGTTTTCAACTTACTTTGTGAACTCTTCTTGGGGTGTGTTTTTTGACAGATAAGCTTACAAACAATGGGGCAGCAACACCAGCAGGGTTGGTAGCAGCATCACTATCACACGCATTTGCACTTTTTGTTGCTGTTTCTGTTGGTGCTAACATTTCTGGTGGACATGTTAACCCTGCTGTCACTTTTGGTGCTTTCATTGGTGGACACATTACACTCATTAGAGGCCTTTTGTATTGGATTGCTCAGTTGCTTGGTTCTGTTGTTGCTTGCTTGCTCCTTAAAATTGCCACTGGTGGACTGGTGAGAAACATTACATATATATTTATTCATTCTAAATTGAATCCATTGTGTCGGAAGTGATGGTAGCATGACTTTCCCTCGGGTAAAGAACCCGAGTTCCATTCCTGAAGTCGTCTATTTAGTTGGCAGATCAATTCGAGGATTAGTCTCATAACGGATCTAAATAACCTAAACTATAGGATAGAGTCTATTGTAATGAAATACCTTAACTATGGTCGAAAATAAAATAAAAAAATCAATCACATTAGGACTAAATTCACTCTCCAAAATTTCAATGTGATCAAATATTTTTAATTCAAAGTATCGTTTTGCATATTCGTTAATTTCTTTCAAAGATCAAATTGTTTTATGCTTATAATTTCGGTAACAAAATGTAAAATAAAGTCAAAAAGTTTTCATGTAATTTTTTTCAAAGTATCATTTTAGACTCACATGTTAGTTATTACAATGATTGTGTTGTTACCTTATTTTTTTACTTAACTTTCATTTTTTAGTGCTGAATTTTAGTATTAATTGGTGTATGTCTATTGCAGGAAACATCTGCATTCTCATTATCTTCTGGTGTGGGAGCAACAAATGCACTTGTGTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTTTATGCTACTGCAGTAGATCCAAAAAATGGTAGCCTGGGAACAATTGCTCCAATTGCAATTGGTTTCATAGTTGGAGCTAACATCTTAGCAGGTGGTGCATTTGATGGTGCATCCATGAACCCAGCAGTTTCTTTTGGGCCTGCTGTTGTTAGCTGGACATGGGCTAATCATTGGGTCTATTGGGTCGGCCCGTTGATTGGTTCTGCTATTGCTGCAGTCGTCTACGAGACTTTCTTTATCACCCCTAGCTCTTATGAACAGTTACCGGTCACGGATTATTAA
Protein sequence

>MS.gene004088.t1

MPISRIAIGNPSEFGKADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLIRGLLYWIAQLLGSVVACLLLKIATGGLETSAFSLSSGVGATNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPLIGSAIAAVVYETFFITPSSYEQLPVTDY