AlfalfaGEDB | MS.gene22290

M. sativa cultivar XinJiangDaYe / MS.gene22290

KEGG: K06688
GO: -
PFAM: PF00179.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22290.t1	XP_003610967.1	98.3	177	3	0	1	177	1	177	8.20E-95	356.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22290.t1	Q8L7T3	85.0	160	24	0	18	177	21	180	1.2e-75	283.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22290.t1	G7K9A0	98.3	177	3	0	1	177	1	177	5.9e-95	356.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055578	MS.gene22290	0.802449	5.58E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene22290	MS.gene023529	PPI
MS.gene033130	MS.gene22290	PPI
MS.gene22290	MS.gene003373	PPI
MS.gene22290	MS.gene024700	PPI
MS.gene22290	MS.gene08926	PPI
MS.gene22290	MS.gene056800	PPI
MS.gene08774	MS.gene22290	PPI
MS.gene08926	MS.gene22290	PPI
MS.gene28923	MS.gene22290	PPI
MS.gene22290	MS.gene033130	PPI
MS.gene22290	MS.gene58439	PPI
MS.gene22290	MS.gene060634	PPI
MS.gene22290	MS.gene031830	PPI
MS.gene40572	MS.gene22290	PPI
MS.gene052308	MS.gene22290	PPI
MS.gene060137	MS.gene22290	PPI
MS.gene22290	MS.gene049883	PPI
MS.gene22290	MS.gene21952	PPI
MS.gene21678	MS.gene22290	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22290.t1	MTR_5g009020	98.305	177	3	0	1	177	1	177	2.34e-131	365
MS.gene22290.t1	MTR_4g076200	85.876	177	25	0	1	177	1	177	6.78e-115	323
MS.gene22290.t1	MTR_4g076200	91.176	136	12	0	42	177	1	136	6.56e-94	269
MS.gene22290.t1	MTR_1g095510	64.286	168	59	1	6	172	15	182	5.55e-74	221
MS.gene22290.t1	MTR_1g095510	67.969	128	41	0	45	172	1	128	9.23e-62	187
MS.gene22290.t1	MTR_1g095510	57.738	168	50	2	6	172	15	162	1.27e-60	186
MS.gene22290.t1	MTR_4g108080	45.652	138	74	1	35	171	7	144	8.57e-39	130
MS.gene22290.t1	MTR_8g468530	44.928	138	75	1	35	171	23	160	2.71e-38	129
MS.gene22290.t1	MTR_2g078010	45.312	128	70	0	35	162	8	135	5.05e-35	120
MS.gene22290.t1	MTR_2g078010	45.312	128	70	0	35	162	8	135	6.87e-35	120
MS.gene22290.t1	MTR_8g071040	42.424	132	75	1	35	165	4	135	4.97e-33	115
MS.gene22290.t1	MTR_4g073240	43.089	123	70	0	35	157	4	126	3.77e-32	113
MS.gene22290.t1	MTR_5g075580	41.406	128	75	0	35	162	4	131	5.51e-32	112
MS.gene22290.t1	MTR_3g062450	41.406	128	75	0	35	162	4	131	5.51e-32	112
MS.gene22290.t1	MTR_7g116940	40.458	131	77	1	35	164	4	134	1.24e-31	111
MS.gene22290.t1	MTR_2g078010	40.845	142	70	1	35	162	8	149	1.31e-31	112
MS.gene22290.t1	MTR_1g021150	41.406	128	75	0	35	162	4	131	2.68e-31	110
MS.gene22290.t1	MTR_1g021150	39.231	130	79	0	33	162	10	139	6.76e-29	105
MS.gene22290.t1	MTR_4g108080	46.154	104	56	0	35	138	7	110	8.49e-29	103
MS.gene22290.t1	MTR_7g116940	38.406	138	77	2	35	164	4	141	1.42e-28	103
MS.gene22290.t1	MTR_4g073240	47.872	94	49	0	64	157	4	97	1.87e-28	102
MS.gene22290.t1	MTR_4g108080	51.000	100	48	1	73	171	45	144	2.63e-28	103
MS.gene22290.t1	MTR_5g075580	44.118	102	57	0	61	162	1	102	4.16e-28	101
MS.gene22290.t1	MTR_2g078010	45.545	101	55	0	35	135	8	108	3.67e-27	99.0
MS.gene22290.t1	MTR_4g063490	35.252	139	76	2	49	173	22	160	6.17e-26	97.8
MS.gene22290.t1	MTR_8g085690	37.097	124	78	0	35	158	25	148	2.81e-24	93.6
MS.gene22290.t1	MTR_7g116940	39.623	106	64	0	35	140	4	109	2.95e-24	92.4
MS.gene22290.t1	MTR_3g098780	38.211	123	74	2	36	156	6	128	9.94e-24	92.8
MS.gene22290.t1	MTR_3g098780	37.600	125	76	2	36	158	30	154	1.16e-23	93.2
MS.gene22290.t1	MTR_2g096690	35.115	131	71	2	57	173	30	160	6.66e-23	89.7
MS.gene22290.t1	MTR_2g096690	34.615	130	72	1	57	173	30	159	7.88e-23	89.7
MS.gene22290.t1	MTR_3g110110	36.607	112	70	1	47	157	20	131	2.93e-22	87.8
MS.gene22290.t1	MTR_5g016630	34.932	146	87	3	36	173	8	153	3.10e-21	85.5
MS.gene22290.t1	MTR_4g094872	35.915	142	83	3	36	169	8	149	4.70e-21	84.7
MS.gene22290.t1	MTR_4g106690	36.000	125	75	4	35	157	6	127	3.42e-20	83.2
MS.gene22290.t1	MTR_8g028920	34.400	125	77	4	35	157	6	127	5.21e-18	77.4
MS.gene22290.t1	MTR_5g019480	38.824	85	52	0	73	157	21	105	5.78e-18	76.3
MS.gene22290.t1	MTR_5g019480	31.746	126	85	1	36	161	33	157	8.56e-18	77.0
MS.gene22290.t1	MTR_5g019480	32.787	122	81	1	36	157	36	156	1.07e-17	76.6
MS.gene22290.t1	MTR_7g087590	30.496	141	97	1	32	171	10	150	3.25e-16	74.3
MS.gene22290.t1	MTR_8g098595	36.667	90	55	2	70	157	23	112	6.16e-16	71.6
MS.gene22290.t1	MTR_4g073240	50.820	61	30	0	97	157	4	64	8.19e-16	69.3
MS.gene22290.t1	MTR_8g076490	36.364	99	61	2	36	133	19	116	1.94e-15	70.1
MS.gene22290.t1	MTR_8g028920	36.905	84	51	2	76	157	5	88	3.20e-15	69.3
MS.gene22290.t1	MTR_5g021260	36.364	99	61	2	36	133	19	116	5.31e-14	66.6
MS.gene22290.t1	MTR_2g096690	43.077	65	37	0	57	121	30	94	7.75e-13	62.4
MS.gene22290.t1	MTR_8g023380	32.759	116	69	3	31	141	4	115	5.33e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22290.t1	AT3G20060	85.256	156	23	0	18	173	22	177	1.40e-99	285
MS.gene22290.t1	AT1G50490	85.000	160	24	0	18	177	21	180	9.07e-94	270
MS.gene22290.t1	AT3G20060	87.879	132	16	0	42	173	1	132	2.77e-87	252
MS.gene22290.t1	AT1G14400	44.928	138	75	1	35	171	7	144	4.73e-38	128
MS.gene22290.t1	AT1G14400	44.928	138	75	1	35	171	7	144	4.73e-38	128
MS.gene22290.t1	AT2G02760	44.928	138	75	1	35	171	7	144	5.34e-38	128
MS.gene22290.t1	AT2G02760	44.928	138	75	1	35	171	7	144	5.34e-38	128
MS.gene22290.t1	AT2G02760	44.928	138	75	1	35	171	7	144	5.34e-38	128
MS.gene22290.t1	AT2G02760	44.928	138	75	1	35	171	7	144	5.34e-38	128
MS.gene22290.t1	AT5G62540	45.775	142	75	2	30	169	2	143	5.99e-37	125
MS.gene22290.t1	AT1G78870	46.094	128	69	0	35	162	8	135	1.23e-35	122
MS.gene22290.t1	AT1G16890	45.312	128	70	0	35	162	8	135	5.37e-35	120
MS.gene22290.t1	AT1G16890	46.923	130	67	1	35	162	15	144	3.93e-34	118
MS.gene22290.t1	AT5G56150	42.188	128	74	0	35	162	4	131	2.09e-32	113
MS.gene22290.t1	AT2G16740	39.706	136	81	1	35	169	4	139	3.55e-32	113
MS.gene22290.t1	AT1G64230	41.406	128	75	0	35	162	4	131	7.17e-32	112
MS.gene22290.t1	AT1G64230	41.406	128	75	0	35	162	4	131	7.17e-32	112
MS.gene22290.t1	AT4G27960	40.625	128	76	0	35	162	4	131	1.15e-31	112
MS.gene22290.t1	AT3G08700	40.580	138	80	2	35	170	4	141	1.49e-31	111
MS.gene22290.t1	AT3G08700	40.580	138	80	2	35	170	4	141	1.49e-31	111
MS.gene22290.t1	AT3G08690	41.935	124	72	0	35	158	4	127	3.64e-31	110
MS.gene22290.t1	AT3G08690	41.935	124	72	0	35	158	4	127	3.64e-31	110
MS.gene22290.t1	AT5G41700	39.844	128	77	0	35	162	4	131	5.38e-31	110
MS.gene22290.t1	AT5G41700	39.844	128	77	0	35	162	4	131	5.38e-31	110
MS.gene22290.t1	AT5G41700	39.844	128	77	0	35	162	4	131	5.38e-31	110
MS.gene22290.t1	AT5G53300	39.844	128	77	0	35	162	4	131	5.86e-31	110
MS.gene22290.t1	AT5G53300	39.844	128	77	0	35	162	4	131	5.86e-31	110
MS.gene22290.t1	AT5G53300	39.844	128	77	0	35	162	4	131	5.86e-31	110
MS.gene22290.t1	AT4G27960	40.625	128	76	0	35	162	34	161	1.58e-30	109
MS.gene22290.t1	AT1G16890	51.579	95	46	0	68	162	8	102	1.19e-29	105
MS.gene22290.t1	AT1G78870	51.579	95	46	0	68	162	8	102	1.43e-29	105
MS.gene22290.t1	AT5G41700	39.535	129	77	1	35	162	4	132	6.45e-29	104
MS.gene22290.t1	AT1G64230	38.686	137	75	1	35	162	4	140	1.20e-28	104
MS.gene22290.t1	AT1G78870	45.714	105	57	0	35	139	8	112	3.20e-28	102
MS.gene22290.t1	AT1G64230	42.727	110	62	1	56	164	67	176	4.08e-28	103
MS.gene22290.t1	AT1G64230	42.727	110	62	1	56	164	67	176	4.08e-28	103
MS.gene22290.t1	AT1G78870	51.042	96	46	1	68	162	8	103	6.17e-28	101
MS.gene22290.t1	AT3G13550	37.500	136	85	0	35	170	39	174	3.45e-26	99.0
MS.gene22290.t1	AT1G36340	40.876	137	79	2	26	162	3	137	1.78e-25	96.3
MS.gene22290.t1	AT1G36340	40.876	137	79	2	26	162	3	137	1.78e-25	96.3
MS.gene22290.t1	AT5G50870	40.000	135	73	4	34	166	4	132	1.83e-25	97.1
MS.gene22290.t1	AT5G50870	41.129	124	68	3	34	155	4	124	2.61e-25	97.1
MS.gene22290.t1	AT5G56150	41.000	100	59	0	35	134	4	103	7.21e-24	90.9
MS.gene22290.t1	AT3G55380	33.813	139	78	2	49	173	23	161	4.01e-23	90.5
MS.gene22290.t1	AT3G13550	39.091	110	67	0	35	144	39	148	6.62e-23	90.1
MS.gene22290.t1	AT5G59300	34.351	131	72	2	57	173	30	160	1.00e-22	89.4
MS.gene22290.t1	AT5G41700	38.462	104	64	0	35	138	4	107	1.32e-22	88.6
MS.gene22290.t1	AT3G46460	33.813	139	78	2	49	173	22	160	1.70e-22	89.0
MS.gene22290.t1	AT5G25760	36.290	124	73	2	35	157	13	131	2.50e-22	88.2
MS.gene22290.t1	AT5G25760	36.290	124	73	2	35	157	13	131	2.50e-22	88.2
MS.gene22290.t1	AT5G53300	38.384	99	61	0	35	133	4	102	5.22e-22	85.9
MS.gene22290.t1	AT1G63800	38.400	125	72	4	35	157	6	127	9.25e-22	87.4
MS.gene22290.t1	AT5G41340	37.600	125	73	4	35	157	6	127	6.42e-21	85.1
MS.gene22290.t1	AT3G57870	35.915	142	83	3	36	169	9	150	3.88e-20	82.4
MS.gene22290.t1	AT2G18600	33.333	153	92	5	7	157	11	155	1.70e-19	81.6
MS.gene22290.t1	AT2G18600	33.333	153	92	5	7	157	11	155	1.70e-19	81.6
MS.gene22290.t1	AT1G63800	40.217	92	53	2	68	157	21	112	2.06e-19	80.9
MS.gene22290.t1	AT2G46030	36.000	125	75	4	35	157	6	127	6.06e-19	80.1
MS.gene22290.t1	AT2G46030	36.000	125	75	4	35	157	6	127	6.06e-19	80.1
MS.gene22290.t1	AT2G46030	36.000	125	75	4	35	157	78	199	4.29e-18	79.3
MS.gene22290.t1	AT4G36800	31.061	132	89	2	27	157	24	154	2.24e-17	75.9
MS.gene22290.t1	AT4G36800	31.061	132	89	2	27	157	24	154	2.24e-17	75.9
MS.gene22290.t1	AT5G05080	31.410	156	98	3	18	172	3	150	7.83e-17	75.9
MS.gene22290.t1	AT5G05080	31.410	156	98	3	18	172	3	150	7.83e-17	75.9
MS.gene22290.t1	AT5G05080	31.410	156	98	3	18	172	3	150	7.83e-17	75.9
MS.gene22290.t1	AT5G05080	31.410	156	98	3	18	172	3	150	7.83e-17	75.9
MS.gene22290.t1	AT5G41340	40.000	85	49	2	75	157	8	92	2.81e-16	72.4
MS.gene22290.t1	AT3G24515	32.484	157	86	5	36	173	10	165	3.86e-16	75.5
MS.gene22290.t1	AT2G46030	35.644	101	63	2	59	157	30	130	4.66e-16	72.4
MS.gene22290.t1	AT2G46030	35.644	101	63	2	59	157	30	130	4.66e-16	72.4
MS.gene22290.t1	AT3G46460	33.333	111	60	2	77	173	8	118	6.62e-16	70.5
MS.gene22290.t1	AT3G46460	33.333	111	60	2	77	173	8	118	6.62e-16	70.5
MS.gene22290.t1	AT3G55380	26.590	173	79	3	49	173	23	195	8.23e-16	72.0
MS.gene22290.t1	AT3G24515	35.652	115	65	3	68	173	76	190	9.15e-16	74.3
MS.gene22290.t1	AT1G75440	33.333	111	72	2	24	133	7	116	2.88e-14	67.4
MS.gene22290.t1	AT1G45050	32.432	111	73	2	24	133	7	116	4.06e-14	67.0
MS.gene22290.t1	AT4G36410	34.286	105	67	2	30	133	13	116	9.59e-14	65.9
MS.gene22290.t1	AT5G42990	32.432	111	73	2	24	133	7	116	1.78e-13	65.1
MS.gene22290.t1	AT2G32790	35.246	122	76	1	53	174	51	169	1.29e-12	63.2

Find 42 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGACCTTTGGAGCCTTAAA+AGG	0.231384	5.3:+3092866	None:intergenic
GATTGAGTGTCAACGGATTT+AGG	0.260118	5.3:+3093712	None:intergenic
CACAATATATTGTCCTCTTC+AGG	0.336865	5.3:+3092974	None:intergenic
CAGGTTGCAGTCTGAATTGA+TGG	0.339528	5.3:-3093307	MS.gene22290:CDS
TATTTGCTTGGACATTCTTC+AGG	0.340447	5.3:-3092798	MS.gene22290:intron
TGGCAGATGAGTGGAGATTC+TGG	0.360212	5.3:-3093010	MS.gene22290:intron
GTGGTGTCAAATTTGACCTT+TGG	0.405768	5.3:+3092854	None:intergenic
TTGCCATGCAAATCAACATT+GGG	0.409629	5.3:+3092821	None:intergenic
ATCCACAGGCAGCACAGCTT+TGG	0.411990	5.3:-3092485	MS.gene22290:CDS
GTCTGAATTGATGGCTTTGA+TGG	0.419788	5.3:-3093298	MS.gene22290:intron
TTTAGCGGCGAGCTAATGTT+TGG	0.426525	5.3:+3092507	None:intergenic
CACCCCAATGTTGATTTGCA+TGG	0.432591	5.3:-3092824	MS.gene22290:CDS
GGAGGGAGAGGTTGCATTGA+AGG	0.440179	5.3:+3093736	None:intergenic
ACACTCAATCTGTTCTCAAA+AGG	0.451346	5.3:-3093699	MS.gene22290:intron
AGCCTTAAAAGGATACTCAT+TGG	0.457477	5.3:+3092877	None:intergenic
ACTTTACTTCTACAGAATAC+AGG	0.462310	5.3:-3092381	MS.gene22290:intron
GCCTTAAAAGGATACTCATT+GGG	0.466815	5.3:+3092878	None:intergenic
AGCAAAGACACTGTCTTTGA+AGG	0.498680	5.3:-3092929	MS.gene22290:CDS
TTTCAAATTTACCTCCTAGC+AGG	0.498899	5.3:+3092609	None:intergenic
TGCTGGAAAGGAACAATAGC+AGG	0.507664	5.3:-3092953	MS.gene22290:CDS
GTGTCAACGGATTTAGGCGG+AGG	0.521333	5.3:+3093718	None:intergenic
GACAATATATTGTGCTGGAA+AGG	0.525589	5.3:-3092965	MS.gene22290:CDS
CTCCAAAGCTGTGCTGCCTG+TGG	0.525701	5.3:+3092483	None:intergenic
TTTGCATGGCAATATTTGCT+TGG	0.528158	5.3:-3092810	MS.gene22290:CDS
AAGAGGACAATATATTGTGC+TGG	0.531992	5.3:-3092970	MS.gene22290:CDS
ACGGATTTAGGCGGAGGGAG+AGG	0.544685	5.3:+3093724	None:intergenic
GAGAACAGATTGAGTGTCAA+CGG	0.546293	5.3:+3093705	None:intergenic
TTGTCAATTCAAAGCCTGCT+AGG	0.548402	5.3:-3092623	MS.gene22290:CDS
GAGATCAAAGTTTAAGCAGC+AGG	0.549093	5.3:+3092331	None:intergenic
TGTGCTGCCTGTGGATTTAG+CGG	0.580376	5.3:+3092492	None:intergenic
ATTGCCATGCAAATCAACAT+TGG	0.581157	5.3:+3092820	None:intergenic
TTCTACAGAATACAGGAAGA+TGG	0.589700	5.3:-3092374	MS.gene22290:intron
GTGATTATTTGGCAGATGAG+TGG	0.606809	5.3:-3093019	MS.gene22290:intron
TAGCTCGCCGCTAAATCCAC+AGG	0.611347	5.3:-3092499	MS.gene22290:CDS
CAGCTTTGGAGCAATCAAGA+AGG	0.619795	5.3:-3092471	MS.gene22290:intron
TACAGAATACAGGAAGATGG+TGG	0.637677	5.3:-3092371	MS.gene22290:intron
TCAATTCAAAGCCTGCTAGG+AGG	0.657162	5.3:-3092620	MS.gene22290:intron
TGTCAACGGATTTAGGCGGA+GGG	0.657757	5.3:+3093719	None:intergenic
CATGCAAATCAACATTGGGG+TGG	0.679728	5.3:+3092825	None:intergenic
TGAGTGTCAACGGATTTAGG+CGG	0.688984	5.3:+3093715	None:intergenic
TGCCATGCAAATCAACATTG+GGG	0.689638	5.3:+3092822	None:intergenic
AACATTGGGGTGGAAGCATG+TGG	0.689650	5.3:+3092835	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTTTAGTTAATTTAAAATAT+TGG	-	chr5.3:3092719-3092738	MS.gene22290:intron	10.0%
!!!	TTTTAATTTACTTAATTTTG+GGG	-	chr5.3:3092582-3092601	MS.gene22290:intron	10.0%
!!!	TTTTGAATTTATTTGATTTT+GGG	-	chr5.3:3092653-3092672	MS.gene22290:CDS	10.0%
!!	AAAAATACAATTAACAAACA+GGG	+	chr5.3:3093579-3093598	None:intergenic	15.0%
!!	AATTCATTAATGTGATTATT+TGG	-	chr5.3:3092989-3093008	MS.gene22290:CDS	15.0%
!!	ATTCATTAATGTGATTATTT+GGG	-	chr5.3:3092990-3093009	MS.gene22290:CDS	15.0%
!!	TAAAAATACAATTAACAAAC+AGG	+	chr5.3:3093580-3093599	None:intergenic	15.0%
!!	TCTTGATTGAATTAAAATTT+AGG	-	chr5.3:3092553-3092572	MS.gene22290:intron	15.0%
!!!	AATTGATTAATCTGTTTTAT+AGG	-	chr5.3:3093442-3093461	MS.gene22290:intron	15.0%
!!!	AGTTAATTTAAAATATTGGT+AGG	-	chr5.3:3092723-3092742	MS.gene22290:intron	15.0%
!!!	CTTTTGAATTTATTTGATTT+TGG	-	chr5.3:3092652-3092671	MS.gene22290:CDS	15.0%
!!!	GTTAATTTAAAATATTGGTA+GGG	-	chr5.3:3092724-3092743	MS.gene22290:intron	15.0%
!!!	TGTTGATTAAACTAAATTTA+GGG	-	chr5.3:3092690-3092709	MS.gene22290:intron	15.0%
!!!	TTGTTGATTAAACTAAATTT+AGG	-	chr5.3:3092689-3092708	MS.gene22290:intron	15.0%
!!	AAAAAGTAATTAGATGGTAA+TGG	-	chr5.3:3092946-3092965	MS.gene22290:CDS	20.0%
!!	AAAAGTAATTAGATGGTAAT+GGG	-	chr5.3:3092947-3092966	MS.gene22290:CDS	20.0%
!!	AAAATTGAGTTAGTTAGATT+AGG	+	chr5.3:3092766-3092785	None:intergenic	20.0%
!!	GACTTAAAAAAGTAATTAGA+TGG	-	chr5.3:3092940-3092959	MS.gene22290:CDS	20.0%
!!!	AAGTGTTATATTATTGATTC+AGG	+	chr5.3:3093543-3093562	None:intergenic	20.0%
!!!	AATCTGTTTTATAGGATAAA+TGG	-	chr5.3:3093450-3093469	MS.gene22290:intron	20.0%
!!!	TGTTAGTTTATCAATTAGTT+TGG	-	chr5.3:3092896-3092915	MS.gene22290:CDS	20.0%
!!!	TGTTGATTGAATTAAAGTTA+GGG	-	chr5.3:3092618-3092637	MS.gene22290:intron	20.0%
!!!	TTGTTGATTGAATTAAAGTT+AGG	-	chr5.3:3092617-3092636	MS.gene22290:intron	20.0%
!	TTAAAAGAAATCAAACCCTT+CGG	-	chr5.3:3092504-3092523	MS.gene22290:CDS	25.0%
!!	TAGTTTGTATGAAATCAGTT+GGG	-	chr5.3:3093062-3093081	MS.gene22290:intron	25.0%
!!!	ATTTGATTTTGGGAATCAAT+GGG	-	chr5.3:3092663-3092682	MS.gene22290:CDS	25.0%
!!!	TATTTGATTTTGGGAATCAA+TGG	-	chr5.3:3092662-3092681	MS.gene22290:CDS	25.0%
!!!	TTAGTTTGTATGAAATCAGT+TGG	-	chr5.3:3093061-3093080	MS.gene22290:intron	25.0%
	ACTTTACTTCTACAGAATAC+AGG	-	chr5.3:3093745-3093764	MS.gene22290:CDS	30.0%
	AGTTTGTATGAAATCAGTTG+GGG	-	chr5.3:3093063-3093082	MS.gene22290:intron	30.0%
!	GTCTAAAGCAATGTAATTTG+AGG	-	chr5.3:3092918-3092937	MS.gene22290:CDS	30.0%
!!	ACTTAATTTTGGGGATCTAT+TGG	-	chr5.3:3092591-3092610	MS.gene22290:intron	30.0%
!!	GATAGATTTTGGGGATTAAT+GGG	-	chr5.3:3092526-3092545	MS.gene22290:intron	30.0%
!!	TAGATGGTAATGGGATTATT+TGG	-	chr5.3:3092956-3092975	MS.gene22290:CDS	30.0%
	AAGAGGACAATATATTGTGC+TGG	-	chr5.3:3093156-3093175	MS.gene22290:intron	35.0%
	ACACTCAATCTGTTCTCAAA+AGG	-	chr5.3:3092427-3092446	MS.gene22290:intron	35.0%
	AGCCTTAAAAGGATACTCAT+TGG	+	chr5.3:3093252-3093271	None:intergenic	35.0%
	ATTGCCATGCAAATCAACAT+TGG	+	chr5.3:3093309-3093328	None:intergenic	35.0%
	CACAATATATTGTCCTCTTC+AGG	+	chr5.3:3093155-3093174	None:intergenic	35.0%
	GACAATATATTGTGCTGGAA+AGG	-	chr5.3:3093161-3093180	MS.gene22290:intron	35.0%
	GCCTTAAAAGGATACTCATT+GGG	+	chr5.3:3093251-3093270	None:intergenic	35.0%
	TATTTGCTTGGACATTCTTC+AGG	-	chr5.3:3093328-3093347	MS.gene22290:intron	35.0%
	TTCTACAGAATACAGGAAGA+TGG	-	chr5.3:3093752-3093771	MS.gene22290:CDS	35.0%
	TTGCCATGCAAATCAACATT+GGG	+	chr5.3:3093308-3093327	None:intergenic	35.0%
	TTTCAAATTTACCTCCTAGC+AGG	+	chr5.3:3093520-3093539	None:intergenic	35.0%
	TTTGCATGGCAATATTTGCT+TGG	-	chr5.3:3093316-3093335	MS.gene22290:intron	35.0%
!	AAACCCTTCGGATAGATTTT+GGG	-	chr5.3:3092516-3092535	MS.gene22290:intron	35.0%
!	TCCCAATGAGTATCCTTTTA+AGG	-	chr5.3:3093247-3093266	MS.gene22290:intron	35.0%
!!	GGATAGATTTTGGGGATTAA+TGG	-	chr5.3:3092525-3092544	MS.gene22290:intron	35.0%
!!	TGGCTTTGATGGTAAGAAAT+TGG	-	chr5.3:3092839-3092858	MS.gene22290:CDS	35.0%
	AATCCCCAAAATCTATCCGA+AGG	+	chr5.3:3092523-3092542	None:intergenic	40.0%
	AGCAAAGACACTGTCTTTGA+AGG	-	chr5.3:3093197-3093216	MS.gene22290:intron	40.0%
	ATCCCCAAAATCTATCCGAA+GGG	+	chr5.3:3092522-3092541	None:intergenic	40.0%
	GAGAACAGATTGAGTGTCAA+CGG	+	chr5.3:3092424-3092443	None:intergenic	40.0%
	GTGATTATTTGGCAGATGAG+TGG	-	chr5.3:3093107-3093126	MS.gene22290:intron	40.0%
	TACAGAATACAGGAAGATGG+TGG	-	chr5.3:3093755-3093774	MS.gene22290:CDS	40.0%
	TGCCATGCAAATCAACATTG+GGG	+	chr5.3:3093307-3093326	None:intergenic	40.0%
	TTGTCAATTCAAAGCCTGCT+AGG	-	chr5.3:3093503-3093522	MS.gene22290:intron	40.0%
!	AACCCTTCGGATAGATTTTG+GGG	-	chr5.3:3092517-3092536	MS.gene22290:intron	40.0%
!	CAAACCCTTCGGATAGATTT+TGG	-	chr5.3:3092515-3092534	MS.gene22290:intron	40.0%
!	GATTGAGTGTCAACGGATTT+AGG	+	chr5.3:3092417-3092436	None:intergenic	40.0%
!	GTGGTGTCAAATTTGACCTT+TGG	+	chr5.3:3093275-3093294	None:intergenic	40.0%
!!	GTCTGAATTGATGGCTTTGA+TGG	-	chr5.3:3092828-3092847	MS.gene22290:CDS	40.0%
!!	TGTATCTGCTTTTCCTGAAG+AGG	-	chr5.3:3093139-3093158	MS.gene22290:intron	40.0%
!!	TTGACCTTTGGAGCCTTAAA+AGG	+	chr5.3:3093263-3093282	None:intergenic	40.0%
!!!	GTATCCTTTTAAGGCTCCAA+AGG	-	chr5.3:3093256-3093275	MS.gene22290:intron	40.0%
	CAGGTTGCAGTCTGAATTGA+TGG	-	chr5.3:3092819-3092838	MS.gene22290:CDS	45.0%
	CATGCAAATCAACATTGGGG+TGG	+	chr5.3:3093304-3093323	None:intergenic	45.0%
	GTGTCAGTAGCATGTGATGA+TGG	-	chr5.3:3093362-3093381	MS.gene22290:intron	45.0%
	TCAATTCAAAGCCTGCTAGG+AGG	-	chr5.3:3093506-3093525	MS.gene22290:intron	45.0%
	TGCTGGAAAGGAACAATAGC+AGG	-	chr5.3:3093173-3093192	MS.gene22290:intron	45.0%
	TTTAGCGGCGAGCTAATGTT+TGG	+	chr5.3:3093622-3093641	None:intergenic	45.0%
!	TGAGTGTCAACGGATTTAGG+CGG	+	chr5.3:3092414-3092433	None:intergenic	45.0%
!!	CACCCCAATGTTGATTTGCA+TGG	-	chr5.3:3093302-3093321	MS.gene22290:CDS	45.0%
!!	CAGCTTTGGAGCAATCAAGA+AGG	-	chr5.3:3093655-3093674	MS.gene22290:intron	45.0%
!!	GTGGGTTGTTGCAATTTTGC+AGG	-	chr5.3:3092800-3092819	MS.gene22290:CDS	45.0%
!!!	ATTTTTTTTTTTTTTTTTTG+TGG	-	chr5.3:3092781-3092800	MS.gene22290:intron	5.0%
!!!	TTTTTAATTTACTTAATTTT+GGG	-	chr5.3:3092581-3092600	MS.gene22290:intron	5.0%
!!!	TTTTTTAATTTACTTAATTT+TGG	-	chr5.3:3092580-3092599	MS.gene22290:intron	5.0%
!!!	TTTTTTTTTTTTTTTTTTGT+GGG	-	chr5.3:3092782-3092801	MS.gene22290:intron	5.0%
	TGGCAGATGAGTGGAGATTC+TGG	-	chr5.3:3093116-3093135	MS.gene22290:intron	50.0%
	TGTGCTGCCTGTGGATTTAG+CGG	+	chr5.3:3093637-3093656	None:intergenic	50.0%
!	AACATTGGGGTGGAAGCATG+TGG	+	chr5.3:3093294-3093313	None:intergenic	50.0%
!	TGTCAACGGATTTAGGCGGA+GGG	+	chr5.3:3092410-3092429	None:intergenic	50.0%
	ATCCACAGGCAGCACAGCTT+TGG	-	chr5.3:3093641-3093660	MS.gene22290:intron	55.0%
	GGAGGGAGAGGTTGCATTGA+AGG	+	chr5.3:3092393-3092412	None:intergenic	55.0%
	TAGCTCGCCGCTAAATCCAC+AGG	-	chr5.3:3093627-3093646	MS.gene22290:intron	55.0%
!	GTGTCAACGGATTTAGGCGG+AGG	+	chr5.3:3092411-3092430	None:intergenic	55.0%
	ACGGATTTAGGCGGAGGGAG+AGG	+	chr5.3:3092405-3092424	None:intergenic	60.0%
	CTCCAAAGCTGTGCTGCCTG+TGG	+	chr5.3:3093646-3093665	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	3092342	3093806	3092342	ID=MS.gene22290
chr5.3	mRNA	3092342	3093806	3092342	ID=MS.gene22290.t1;Parent=MS.gene22290
chr5.3	exon	3093700	3093806	3093700	ID=MS.gene22290.t1.exon1;Parent=MS.gene22290.t1
chr5.3	CDS	3093700	3093806	3093700	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1
chr5.3	exon	3093299	3093326	3093299	ID=MS.gene22290.t1.exon2;Parent=MS.gene22290.t1
chr5.3	CDS	3093299	3093326	3093299	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1
chr5.3	exon	3092799	3093026	3092799	ID=MS.gene22290.t1.exon3;Parent=MS.gene22290.t1
chr5.3	CDS	3092799	3093026	3092799	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1
chr5.3	exon	3092621	3092684	3092621	ID=MS.gene22290.t1.exon4;Parent=MS.gene22290.t1
chr5.3	CDS	3092621	3092684	3092621	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1
chr5.3	exon	3092472	3092531	3092472	ID=MS.gene22290.t1.exon5;Parent=MS.gene22290.t1
chr5.3	CDS	3092472	3092531	3092472	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1
chr5.3	exon	3092342	3092388	3092342	ID=MS.gene22290.t1.exon6;Parent=MS.gene22290.t1
chr5.3	CDS	3092342	3092388	3092342	ID=cds.MS.gene22290.t1;Parent=MS.gene22290.t1

Gene Sequence

>MS.gene22290

ATGGCTAGCGCTAACGTTCAAACTGAAGCTTCTCAAAGCAACATTGCTCCTTCAATGCAACCTCTCCCTCCGCCTAAATCCGTTGACACTCAATCTGTTCTCAAAAGGTTCGTTTTTTCAATTCAGCATTACAGTTTTTTGAATCTTGTTTTGTTTTTCGATTTAAAAGAAATCAAACCCTTCGGATAGATTTTGGGGATTAATGGGTTTTTCTTGATTGAATTAAAATTTAGGTTTTTTTTTTAATTTACTTAATTTTGGGGATCTATTGGTTTTTGTTGATTGAATTAAAGTTAGGGTTTTTACTTAACTTTTGAATTTATTTGATTTTGGGAATCAATGGGTTTTTGTTGATTAAACTAAATTTAGGGTTTTTAGTTTAGTTAATTTAAAATATTGGTAGGGTTTTCAGTTTGTTTCTCCTAATCTAACTAACTCAATTTTTTTTTTTTTTTTTTGTGGGTTGTTGCAATTTTGCAGGTTGCAGTCTGAATTGATGGCTTTGATGGTAAGAAATTGGATCTCTCTTTTTCACTTTCTGTGATCTAATTTTGTGTTAGTTTATCAATTAGTTTGGTCTAAAGCAATGTAATTTGAGGACTTAAAAAAGTAATTAGATGGTAATGGGATTATTTGGAAAAGTGATTAATTCATTAATGTGATTATTTGGGCTCATTTATTTTTTATTCTTGTGTGTGTATGCAATGTAATTTGAGCACTTAGTTTGTATGAAATCAGTTGGGGAAAAGTGATTAATTCATTAATGTGATTATTTGGCAGATGAGTGGAGATTCTGGTGTATCTGCTTTTCCTGAAGAGGACAATATATTGTGCTGGAAAGGAACAATAGCAGGAAGCAAAGACACTGTCTTTGAAGGAACAGAATACAAATTGTCACTTTCATTTCCCAATGAGTATCCTTTTAAGGCTCCAAAGGTCAAATTTGACACCACATGCTTCCACCCCAATGTTGATTTGCATGGCAATATTTGCTTGGACATTCTTCAGGTAATGAATGTTGTGTCAGTAGCATGTGATGATGGTGACATCTTGTTATGTTGTGTCATTTTCAATACAACTATTGCATATTGATTATGATTAATTGATTAATCTGTTTTATAGGATAAATGGTCATCTGCTTATGATGTTAGAACAATTCTTTTGTCAATTCAAAGCCTGCTAGGAGGTAAATTTGAAACCTGAATCAATAATATAACACTTTTATTTTGTTCTTCCCTGTTTGTTAATTGTATTTTTACTTCTTTCATAATTTAGAGCCAAACATTAGCTCGCCGCTAAATCCACAGGCAGCACAGCTTTGGAGCAATCAAGAAGGTAAATAAACATAATTGATATTTTGTAGAGTATATCTTCTGAAAGATGAACTGATTTTGCTGTGTTCTACTTTACTTCTACAGAATACAGGAAGATGGTGGAGAAGTTGTACAAAGATCCTGCTGCTTAA

Protein sequence

>MS.gene22290.t1

MASANVQTEASQSNIAPSMQPLPPPKSVDTQSVLKRLQSELMALMMSGDSGVSAFPEEDNILCWKGTIAGSKDTVFEGTEYKLSLSFPNEYPFKAPKVKFDTTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKDPAA