Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033158.t1 | XP_003608997.2 | 96.5 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033158.t1 | Q5GI04 | 88.1 | 285 | 34 | 0 | 1 | 285 | 1 | 285 | 1.6e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033158.t1 | G7JPW8 | 96.5 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 9.4e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033158 | MS.gene20481 | PPI |
| MS.gene043467 | MS.gene033158 | PPI |
| MS.gene033158 | MS.gene055768 | PPI |
| MS.gene033158 | MS.gene029948 | PPI |
| MS.gene033158 | MS.gene59292 | PPI |
| MS.gene033158 | MS.gene68929 | PPI |
| MS.gene033158 | MS.gene030984 | PPI |
| MS.gene033158 | MS.gene028857 | PPI |
| MS.gene31416 | MS.gene033158 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033158.t1 | MTR_4g107810 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 574 |
| MS.gene033158.t1 | MTR_4g107760 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 574 |
| MS.gene033158.t1 | MTR_4g107810 | 96.503 | 286 | 10 | 0 | 1 | 286 | 61 | 346 | 0.0 | 572 |
| MS.gene033158.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene033158.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 537 |
| MS.gene033158.t1 | MTR_6g011380 | 84.397 | 282 | 44 | 0 | 1 | 282 | 1 | 282 | 1.16e-180 | 499 |
| MS.gene033158.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 1.50e-177 | 491 |
| MS.gene033158.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 3.65e-177 | 490 |
| MS.gene033158.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 1.01e-116 | 337 |
| MS.gene033158.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.25e-49 | 159 |
| MS.gene033158.t1 | MTR_3g093220 | 29.508 | 183 | 123 | 4 | 19 | 199 | 71 | 249 | 6.71e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033158.t1 | AT5G62740 | 90.071 | 282 | 28 | 0 | 1 | 282 | 1 | 282 | 0.0 | 532 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.39e-174 | 482 |
| MS.gene033158.t1 | AT3G01290 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 9.02e-171 | 474 |
| MS.gene033158.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.89e-122 | 350 |
Find 64 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.2:-17701055 | MS.gene033158:CDS |
| ATATTCTCATTGCAGTAATT+AGG | 0.215967 | 8.2:-17702081 | MS.gene033158:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.2:+17701845 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.2:+17700966 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.2:+17702049 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.2:-17702615 | MS.gene033158:CDS |
| TATTCTCATTGCAGTAATTA+GGG | 0.308301 | 8.2:-17702080 | MS.gene033158:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.2:-17702627 | MS.gene033158:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.2:-17701054 | MS.gene033158:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.2:-17701905 | MS.gene033158:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.2:-17702628 | MS.gene033158:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.2:-17702713 | MS.gene033158:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.2:-17702644 | MS.gene033158:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.2:-17701145 | MS.gene033158:CDS |
| GTCTAAATATCTCTCTGGGC+TGG | 0.425139 | 8.2:-17701200 | MS.gene033158:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.2:-17701846 | MS.gene033158:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.2:-17700963 | MS.gene033158:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.2:-17701095 | MS.gene033158:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.451469 | 8.2:-17701205 | MS.gene033158:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.2:-17702687 | MS.gene033158:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.2:-17702659 | MS.gene033158:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.2:-17702267 | MS.gene033158:CDS |
| TCTAAATATCTCTCTGGGCT+GGG | 0.486024 | 8.2:-17701199 | MS.gene033158:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.2:+17702577 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.2:-17702719 | MS.gene033158:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.2:-17702686 | MS.gene033158:CDS |
| ATCGTTGGCCTTGTTTGCCA+AGG | 0.517898 | 8.2:+17702250 | None:intergenic |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.2:+17702668 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.2:+17701024 | None:intergenic |
| TGGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.2:+17702255 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.2:-17701010 | MS.gene033158:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.2:-17701166 | MS.gene033158:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.2:-17702667 | MS.gene033158:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.2:-17701227 | MS.gene033158:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.2:-17701101 | MS.gene033158:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.2:-17701291 | MS.gene033158:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.2:+17700992 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.2:-17701824 | MS.gene033158:intron |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.2:-17701016 | MS.gene033158:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.573023 | 8.2:-17701204 | MS.gene033158:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.2:+17701027 | None:intergenic |
| ATACCGTGCCTTGGCAAACA+AGG | 0.577650 | 8.2:-17702258 | MS.gene033158:CDS |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.2:-17701053 | MS.gene033158:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.2:+17702660 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.2:+17701216 | None:intergenic |
| AAGTTTGTAAAATGCATCGT+TGG | 0.599363 | 8.2:+17702235 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.2:-17702014 | MS.gene033158:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.2:-17701996 | MS.gene033158:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.607104 | 8.2:-17702056 | MS.gene033158:CDS |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.2:+17700945 | None:intergenic |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.2:-17700974 | MS.gene033158:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.2:-17702221 | MS.gene033158:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.2:-17702223 | MS.gene033158:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.2:-17701272 | MS.gene033158:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.2:-17700962 | MS.gene033158:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.635084 | 8.2:-17702732 | MS.gene033158:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.2:-17701233 | MS.gene033158:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.2:-17701170 | MS.gene033158:CDS |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.2:-17701232 | MS.gene033158:CDS |
| CAAATGCGAGACCAAGACAA+AGG | 0.653157 | 8.2:-17702588 | MS.gene033158:intron |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.2:+17701156 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.2:+17701001 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.2:-17702222 | MS.gene033158:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.2:+17701071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | + | chr8.2:17701927-17701946 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+TGG | + | chr8.2:17701222-17701241 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | + | chr8.2:17701928-17701947 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | - | chr8.2:17701945-17701964 | MS.gene033158:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | - | chr8.2:17701222-17701241 | MS.gene033158:CDS | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | + | chr8.2:17701926-17701945 | None:intergenic | 15.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | - | chr8.2:17701737-17701756 | MS.gene033158:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | + | chr8.2:17701277-17701296 | None:intergenic | 20.0% |
| !! | TTTAATATTTATTTGCTTGC+AGG | - | chr8.2:17701383-17701402 | MS.gene033158:intron | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | - | chr8.2:17702145-17702164 | MS.gene033158:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | - | chr8.2:17701274-17701293 | MS.gene033158:CDS | 20.0% |
| !!! | TTTACTTTATTCTCTAAAAG+AGG | - | chr8.2:17701990-17702009 | MS.gene033158:intron | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | - | chr8.2:17702133-17702152 | MS.gene033158:intron | 20.0% |
| ! | AATATGCAAATTATCTGCTA+AGG | - | chr8.2:17701587-17701606 | MS.gene033158:intron | 25.0% |
| ! | AATCAAAATAACATAGCACA+AGG | + | chr8.2:17701254-17701273 | None:intergenic | 25.0% |
| ! | ACAAATCAACATTTATTCCA+TGG | + | chr8.2:17701364-17701383 | None:intergenic | 25.0% |
| ! | ATATTCTCATTGCAGTAATT+AGG | - | chr8.2:17701617-17701636 | MS.gene033158:intron | 25.0% |
| ! | ATGTAACGAAAAACTATGTA+GGG | - | chr8.2:17702062-17702081 | MS.gene033158:CDS | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | + | chr8.2:17702383-17702402 | None:intergenic | 25.0% |
| ! | TATTCTCATTGCAGTAATTA+GGG | - | chr8.2:17701618-17701637 | MS.gene033158:intron | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.2:17702644-17702663 | MS.gene033158:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.2:17702643-17702662 | MS.gene033158:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | - | chr8.2:17701344-17701363 | MS.gene033158:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.2:17700999-17701018 | MS.gene033158:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.2:17701504-17701523 | MS.gene033158:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.2:17701684-17701703 | MS.gene033158:intron | 30.0% | |
| AAGTTTGTAAAATGCATCGT+TGG | + | chr8.2:17701466-17701485 | None:intergenic | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | + | chr8.2:17702192-17702211 | None:intergenic | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.2:17701503-17701522 | None:intergenic | 30.0% | |
| CATGTAACGAAAAACTATGT+AGG | - | chr8.2:17702061-17702080 | MS.gene033158:CDS | 30.0% | |
| CTTATTGCATGTTTATGTAC+TGG | + | chr8.2:17701558-17701577 | None:intergenic | 30.0% | |
| GTACATAAACATGCAATAAG+TGG | - | chr8.2:17701558-17701577 | MS.gene033158:intron | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | - | chr8.2:17702193-17702212 | MS.gene033158:intron | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.2:17702645-17702664 | MS.gene033158:CDS | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.2:17701476-17701495 | MS.gene033158:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.2:17701475-17701494 | MS.gene033158:intron | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | + | chr8.2:17702128-17702147 | None:intergenic | 30.0% |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.2:17701642-17701661 | MS.gene033158:intron | 35.0% | |
| ATATGGTAATCCAAGAGCAA+AGG | + | chr8.2:17702366-17702385 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | + | chr8.2:17701186-17701205 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.2:17702494-17702513 | MS.gene033158:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.2:17701874-17701893 | MS.gene033158:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.2:17701124-17701143 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | - | chr8.2:17701777-17701796 | MS.gene033158:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.2:17701477-17701496 | MS.gene033158:intron | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | - | chr8.2:17701196-17701215 | MS.gene033158:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.2:17702603-17702622 | MS.gene033158:CDS | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | + | chr8.2:17701181-17701200 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | - | chr8.2:17701181-17701200 | MS.gene033158:CDS | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | - | chr8.2:17701747-17701766 | MS.gene033158:intron | 35.0% | |
| ! | AATGCCTACCTTTTTCCTTA+CGG | - | chr8.2:17702029-17702048 | MS.gene033158:CDS | 35.0% |
| ! | ACAGAGTATAGTACTGAAAG+TGG | + | chr8.2:17701322-17701341 | None:intergenic | 35.0% |
| ! | ATGTTTATGTACTGGTAAGC+AGG | + | chr8.2:17701550-17701569 | None:intergenic | 35.0% |
| ! | GATTTTCAGAGAATGTACCA+GGG | - | chr8.2:17702575-17702594 | MS.gene033158:intron | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | - | chr8.2:17702407-17702426 | MS.gene033158:intron | 35.0% |
| ! | TGTTTATGTACTGGTAAGCA+GGG | + | chr8.2:17701549-17701568 | None:intergenic | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.2:17701652-17701671 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.2:17702630-17702649 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | - | chr8.2:17702150-17702169 | MS.gene033158:intron | 35.0% |
| AAGACGTACCGTAAGGAAAA+AGG | + | chr8.2:17702040-17702059 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | + | chr8.2:17702115-17702134 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | + | chr8.2:17701915-17701934 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.2:17702677-17702696 | None:intergenic | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | + | chr8.2:17701168-17701187 | None:intergenic | 40.0% | |
| CCAAATATCTCCTTTGCTCT+TGG | - | chr8.2:17702353-17702372 | MS.gene033158:intron | 40.0% | |
| CCAAGAGCAAAGGAGATATT+TGG | + | chr8.2:17702356-17702375 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | + | chr8.2:17702167-17702186 | None:intergenic | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.2:17702597-17702616 | MS.gene033158:CDS | 40.0% | |
| GATATTTGGCACATAGCACT+CGG | + | chr8.2:17702342-17702361 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.2:17702493-17702512 | MS.gene033158:intron | 40.0% | |
| TACATGTAAGACGTACCGTA+AGG | + | chr8.2:17702047-17702066 | None:intergenic | 40.0% | |
| TCTAAATATCTCTCTGGGCT+GGG | - | chr8.2:17702499-17702518 | MS.gene033158:intron | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.2:17700979-17700998 | MS.gene033158:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | + | chr8.2:17702404-17702423 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.2:17701702-17701721 | MS.gene033158:intron | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.2:17701054-17701073 | MS.gene033158:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.2:17701431-17701450 | MS.gene033158:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.2:17701051-17701070 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | - | chr8.2:17702574-17702593 | MS.gene033158:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.2:17700985-17701004 | MS.gene033158:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.2:17701011-17701030 | MS.gene033158:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | - | chr8.2:17702177-17702196 | MS.gene033158:intron | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.2:17700966-17700985 | MS.gene033158:CDS | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.2:17702756-17702775 | None:intergenic | 45.0% | |
| CAAATGCGAGACCAAGACAA+AGG | - | chr8.2:17701110-17701129 | MS.gene033158:CDS | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.2:17701793-17701812 | MS.gene033158:intron | 45.0% | |
| CGTACCGTAAGGAAAAAGGT+AGG | + | chr8.2:17702036-17702055 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | - | chr8.2:17701852-17701871 | MS.gene033158:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | + | chr8.2:17701856-17701875 | None:intergenic | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.2:17702735-17702754 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | - | chr8.2:17702553-17702572 | MS.gene033158:intron | 45.0% | |
| GTCTAAATATCTCTCTGGGC+TGG | - | chr8.2:17702498-17702517 | MS.gene033158:intron | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | + | chr8.2:17702545-17702564 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.2:17702724-17702743 | MS.gene033158:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.2:17702682-17702701 | MS.gene033158:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+AGG | - | chr8.2:17701201-17701220 | MS.gene033158:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.2:17702466-17702485 | MS.gene033158:intron | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.2:17701070-17701089 | MS.gene033158:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.2:17702595-17702614 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | - | chr8.2:17701083-17701102 | MS.gene033158:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.2:17701059-17701078 | None:intergenic | 45.0% |
| ! | TGTACTGGTAAGCAGGGTTA+TGG | + | chr8.2:17701543-17701562 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.2:17702735-17702754 | MS.gene033158:CDS | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.2:17702736-17702755 | MS.gene033158:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | - | chr8.2:17702165-17702184 | MS.gene033158:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.2:17701012-17701031 | MS.gene033158:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | - | chr8.2:17701440-17701459 | MS.gene033158:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.2:17702532-17702551 | MS.gene033158:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.2:17701041-17701060 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.2:17701039-17701058 | MS.gene033158:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.2:17702465-17702484 | MS.gene033158:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.2:17702674-17702693 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | - | chr8.2:17702426-17702445 | MS.gene033158:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.2:17702688-17702707 | MS.gene033158:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.2:17702528-17702547 | MS.gene033158:intron | 50.0% | |
| TGCGAGACCAAGACAAAGGT+TGG | - | chr8.2:17701114-17701133 | MS.gene033158:CDS | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | - | chr8.2:17701071-17701090 | MS.gene033158:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.2:17702485-17702504 | None:intergenic | 50.0% | |
| !! | ATCGTTGGCCTTGTTTGCCA+AGG | + | chr8.2:17701451-17701470 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.2:17702471-17702490 | MS.gene033158:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.2:17701033-17701052 | None:intergenic | 55.0% | |
| !! | TGGCCTTGTTTGCCAAGGCA+CGG | + | chr8.2:17701446-17701465 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.2:17702700-17702719 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.2:17701031-17701050 | MS.gene033158:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.2:17702709-17702728 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17700943 | 17702777 | 17700943 | ID=MS.gene033158 |
| chr8.2 | mRNA | 17700943 | 17702777 | 17700943 | ID=MS.gene033158.t1;Parent=MS.gene033158 |
| chr8.2 | exon | 17702589 | 17702777 | 17702589 | ID=MS.gene033158.t1.exon1;Parent=MS.gene033158.t1 |
| chr8.2 | CDS | 17702589 | 17702777 | 17702589 | ID=cds.MS.gene033158.t1;Parent=MS.gene033158.t1 |
| chr8.2 | exon | 17702195 | 17702315 | 17702195 | ID=MS.gene033158.t1.exon2;Parent=MS.gene033158.t1 |
| chr8.2 | CDS | 17702195 | 17702315 | 17702195 | ID=cds.MS.gene033158.t1;Parent=MS.gene033158.t1 |
| chr8.2 | exon | 17701997 | 17702088 | 17701997 | ID=MS.gene033158.t1.exon3;Parent=MS.gene033158.t1 |
| chr8.2 | CDS | 17701997 | 17702088 | 17701997 | ID=cds.MS.gene033158.t1;Parent=MS.gene033158.t1 |
| chr8.2 | exon | 17701825 | 17701921 | 17701825 | ID=MS.gene033158.t1.exon4;Parent=MS.gene033158.t1 |
| chr8.2 | CDS | 17701825 | 17701921 | 17701825 | ID=cds.MS.gene033158.t1;Parent=MS.gene033158.t1 |
| chr8.2 | exon | 17700943 | 17701304 | 17700943 | ID=MS.gene033158.t1.exon5;Parent=MS.gene033158.t1 |
| chr8.2 | CDS | 17700943 | 17701304 | 17700943 | ID=cds.MS.gene033158.t1;Parent=MS.gene033158.t1 |
| Gene Sequence |
| Protein sequence |
