AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030984

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030984.t1 MTR_6g011380 99.650 286 1 0 1 286 1 286 0.0 585
MS.gene030984.t1 MTR_8g469160 82.394 284 50 0 1 284 1 284 2.36e-179 495
MS.gene030984.t1 MTR_4g107810 84.561 285 44 0 1 285 1 285 8.39e-175 484
MS.gene030984.t1 MTR_4g107760 84.561 285 44 0 1 285 1 285 8.39e-175 484
MS.gene030984.t1 MTR_4g107810 84.561 285 44 0 1 285 61 345 1.11e-173 483
MS.gene030984.t1 MTR_4g107830 78.788 297 48 1 1 282 1 297 3.64e-172 478
MS.gene030984.t1 MTR_4g107720 83.333 282 47 0 1 282 1 282 8.97e-171 474
MS.gene030984.t1 MTR_4g107730 77.465 284 58 2 1 282 1 280 6.01e-156 436
MS.gene030984.t1 MTR_6g460470 57.447 282 120 0 5 286 7 288 3.59e-115 333
MS.gene030984.t1 MTR_4g107700 88.889 81 9 0 202 282 6 86 1.77e-46 151
MS.gene030984.t1 MTR_6g060500 50.769 65 19 1 161 212 1 65 4.76e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030984.t1 AT5G62740 87.413 286 36 0 1 286 1 286 0.0 515
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MS.gene030984.t1 AT3G01290 75.439 285 70 0 1 285 1 285 4.43e-162 452
MS.gene030984.t1 AT5G51570 58.214 280 115 1 6 285 10 287 8.24e-122 350

Find 59 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAAATTTGCTGATGTTT+TGG 0.245719 6.2:+5532822 MS.gene030984:CDS
ACCAAGTCCGGACAGATATT+TGG 0.265153 6.2:-5535136 None:intergenic
TTCGACACCATGAAGGAAAT+TGG 0.320579 6.2:+5535279 MS.gene030984:CDS
GACATCCTTAGCTGTTGTTC+CGG 0.321221 6.2:-5535229 None:intergenic
CGCATTTAACATCAAGTTGC+TGG 0.331640 6.2:-5532912 None:intergenic
GGATGCACCAATTTCCTTCA+TGG 0.336344 6.2:-5535286 None:intergenic
GTTGCTATCAAAGAGCAGTT+TGG 0.398436 6.2:+5532802 MS.gene030984:CDS
ACATCCTTAGCTGTTGTTCC+GGG 0.398792 6.2:-5535228 None:intergenic
GCATTCTCAGAGAATGTTCC+CGG 0.406028 6.2:+5535210 MS.gene030984:CDS
ATTAGAGATGGTCTTCTTCA+AGG 0.428122 6.2:+5535372 MS.gene030984:CDS
TCCAAATATCTGTCCGGACT+TGG 0.431611 6.2:+5535135 MS.gene030984:CDS
CATTGTCTGCCTTGGTGTCT+CGG 0.432891 6.2:+5532856 MS.gene030984:CDS
TGTGTTGGTGAGCCTATAAA+AGG 0.433567 6.2:-5533601 None:intergenic
CAATATCAACAATGAGAGTC+TGG 0.437796 6.2:-5534110 None:intergenic
CTGGATGTCATTGTCTGCCT+TGG 0.439595 6.2:+5532848 MS.gene030984:CDS
TGGTATAGCTCGCCAACGTC+AGG 0.445390 6.2:+5535155 MS.gene030984:CDS
GTGATAATCCACCAGCAATC+TGG 0.447532 6.2:-5532882 None:intergenic
ACAGCATCCAGTTCCAACTT+TGG 0.465414 6.2:-5533918 None:intergenic
CTGCTCTTTGATAGCAACAT+TGG 0.482212 6.2:-5532797 None:intergenic
GTGTTCATTCCACATGGTCC+TGG 0.494595 6.2:+5535324 MS.gene030984:CDS
TGTCTCGGTTACCAGATTGC+TGG 0.507349 6.2:+5532871 MS.gene030984:CDS
TTGGATCTGTTCCCTTGTGT+TGG 0.521954 6.2:-5533616 None:intergenic
CTCGGTTACCAGATTGCTGG+TGG 0.526148 6.2:+5532874 MS.gene030984:CDS
GCTCTCTTGACATTAACATC+AGG 0.526243 6.2:-5534135 None:intergenic
GAGTGTGCCAAAGTTGGAAC+TGG 0.526727 6.2:+5533911 MS.gene030984:CDS
GGATAATGTCTTTGTGAATG+TGG 0.527742 6.2:+5533533 MS.gene030984:intron
GCCGAGTCCAAATATCTGTC+CGG 0.531297 6.2:+5535129 MS.gene030984:CDS
AAGGGCGAGTGTGCCAAAGT+TGG 0.533494 6.2:+5533905 MS.gene030984:CDS
TATCAATAGCTGCAAGAATG+AGG 0.535939 6.2:+5535043 MS.gene030984:intron
GCAATGAACGAGATCAATGC+AGG 0.547779 6.2:+5534156 MS.gene030984:CDS
TGAAAGATGGGTCAAGCACT+AGG 0.554200 6.2:+5532754 None:intergenic
CAACGTCAGGCCATCGTGGA+CGG 0.557301 6.2:+5535168 MS.gene030984:CDS
TTGGCGAGCTATACCAAGTC+CGG 0.560351 6.2:-5535148 None:intergenic
CAAGGCAGACAATGACATCC+AGG 0.562294 6.2:-5532847 None:intergenic
AATAGCTGCAAGAATGAGGT+TGG 0.565001 6.2:+5535047 MS.gene030984:intron
TCCGGACAGATATTTGGACT+CGG 0.577468 6.2:-5535130 None:intergenic
TTGCAGATCAAGAAAGCTGA+AGG 0.578517 6.2:+5535102 MS.gene030984:CDS
GCAATGTCTCTGACAGCACC+AGG 0.581198 6.2:-5535342 None:intergenic
TTTATAGGCTCACCAACACA+AGG 0.582376 6.2:+5533604 MS.gene030984:CDS
AACAACAGCTAAGGATGTCA+TGG 0.584615 6.2:+5535233 MS.gene030984:CDS
GTCTCTCAGTCCGTCCACGA+TGG 0.587635 6.2:-5535178 None:intergenic
TCAATACTTCGACACCATGA+AGG 0.590033 6.2:+5535272 MS.gene030984:CDS
TCATCTGTGTTCATTCCACA+TGG 0.597536 6.2:+5535318 MS.gene030984:CDS
TATTGCAAAGGCTGTTGAAG+AGG 0.598645 6.2:+5533959 MS.gene030984:CDS
TGTTGAAGAGGAGCTTGAGA+AGG 0.599510 6.2:+5533971 MS.gene030984:CDS
GAGGTTGGCTGCGAACGAGA+AGG 0.605456 6.2:+5535062 MS.gene030984:CDS
GGATGTCATGGACATGGTGT+TGG 0.609921 6.2:+5535245 MS.gene030984:CDS
GCAGAAGAATGATATTGCAA+AGG 0.622367 6.2:+5533947 MS.gene030984:CDS
ATTGCTGTGCAGATTAGAGA+TGG 0.623952 6.2:+5535360 MS.gene030984:CDS
AGCTAAGGATGTCATGGACA+TGG 0.630589 6.2:+5535239 MS.gene030984:CDS
TGTTCCCGGAACAACAGCTA+AGG 0.631258 6.2:+5535224 MS.gene030984:CDS
TAAATGCGAGACGAAAACTA+AGG 0.632324 6.2:+5532927 MS.gene030984:CDS
ATCTGGTAACCGAGACACCA+AGG 0.656135 6.2:-5532865 None:intergenic
CGTCCACGATGGCCTGACGT+TGG 0.664492 6.2:-5535167 None:intergenic
ATCTGTACAATACCGCGCTG+TGG 0.666853 6.2:+5533560 MS.gene030984:CDS
CTGACAGCACCAGGACCATG+TGG 0.682921 6.2:-5535333 None:intergenic
TTATAGGCTCACCAACACAA+GGG 0.702114 6.2:+5533605 MS.gene030984:CDS
TCGCCAACGTCAGGCCATCG+TGG 0.726579 6.2:+5535164 MS.gene030984:CDS
ATGCTTTGTCAGCCACAGCG+CGG 0.759934 6.2:-5533572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATGCAAAATATCATA+AGG - chr6.2:5533876-5533895 None:intergenic 15.0%
!! TAAAAGTAATCATATTGTTT+CGG - chr6.2:5533302-5533321 None:intergenic 15.0%
!!! ATATGATTACTTTTATTCTT+TGG + chr6.2:5533307-5533326 MS.gene030984:intron 15.0%
!! ATGAAATTATAGAAAATGTC+AGG + chr6.2:5533700-5533719 MS.gene030984:intron 20.0%
!! GAGTTTATAAAAACAACTTA+TGG + chr6.2:5534729-5534748 MS.gene030984:intron 20.0%
!! TCTTAATCTTGAAGTAAAAA+CGG - chr6.2:5533373-5533392 None:intergenic 20.0%
!! TGAAATTATAGAAAATGTCA+GGG + chr6.2:5533701-5533720 MS.gene030984:intron 20.0%
!!! GCATTTATTTTCAGTTATAA+GGG + chr6.2:5533887-5533906 MS.gene030984:intron 20.0%
!!! TAATTCAACCTTAATGTTTT+AGG + chr6.2:5534059-5534078 MS.gene030984:intron 20.0%
!!! TCTGATCATTTTTTTTACAA+TGG + chr6.2:5535017-5535036 MS.gene030984:intron 20.0%
!!! TGCATTTATTTTCAGTTATA+AGG + chr6.2:5533886-5533905 MS.gene030984:intron 20.0%
! AACTAAGTAATAGAATGAAG+CGG - chr6.2:5533675-5533694 None:intergenic 25.0%
! AATAAGCTGAAAATAGCAAA+TGG - chr6.2:5534760-5534779 None:intergenic 25.0%
! AGCAACTAAATTATCAATCA+TGG - chr6.2:5533840-5533859 None:intergenic 25.0%
! ATAAGCTGAAAATAGCAAAT+GGG - chr6.2:5534759-5534778 None:intergenic 25.0%
! CAACATAACATAAATACTCT+AGG + chr6.2:5534617-5534636 MS.gene030984:intron 25.0%
! CACACAAAAAATGACTAAAA+AGG - chr6.2:5534961-5534980 None:intergenic 25.0%
! CAGGCAAAAAAACAAAATTT+AGG + chr6.2:5534497-5534516 MS.gene030984:intron 25.0%
! TACCATCAAAAACATATGAT+TGG - chr6.2:5533638-5533657 None:intergenic 25.0%
! TATAACATCTAAACACATGT+AGG - chr6.2:5534567-5534586 None:intergenic 25.0%
! TATTTGATCTTATCTACTAG+TGG + chr6.2:5534679-5534698 MS.gene030984:intron 25.0%
! TTGATTGACCAATAGTAATT+GGG + chr6.2:5534987-5535006 MS.gene030984:intron 25.0%
! TTTGATTGACCAATAGTAAT+TGG + chr6.2:5534986-5535005 MS.gene030984:intron 25.0%
!! AAAGTAACAGTTTTCTAACA+AGG + chr6.2:5533118-5533137 MS.gene030984:intron 25.0%
!! ATAAAACATTTTGCTTAGTG+TGG + chr6.2:5534203-5534222 MS.gene030984:intron 25.0%
!! TTAAGTTCTACGTTGAATTT+TGG + chr6.2:5533241-5533260 MS.gene030984:intron 25.0%
!!! ACAACACTTTGTTTTTATGT+TGG + chr6.2:5534389-5534408 MS.gene030984:intron 25.0%
!!! ATCCAATCATATGTTTTTGA+TGG + chr6.2:5533633-5533652 MS.gene030984:CDS 25.0%
!!! TAGTTTTTCAATTTCTGTCA+TGG + chr6.2:5534523-5534542 MS.gene030984:intron 25.0%
AATACAACCCCAATTACTAT+TGG - chr6.2:5534998-5535017 None:intergenic 30.0%
ACAACTTAATCAAGTGCTTA+TGG - chr6.2:5534906-5534925 None:intergenic 30.0%
ATAACGATGTAACACATCAT+CGG - chr6.2:5533749-5533768 None:intergenic 30.0%
ATTCTTTGGATTTATGCTTC+AGG + chr6.2:5533321-5533340 MS.gene030984:intron 30.0%
ATTTGATTATGACCTGTTGT+TGG + chr6.2:5533482-5533501 MS.gene030984:intron 30.0%
GACAAAAAAGGAAGAATGAA+AGG - chr6.2:5532954-5532973 None:intergenic 30.0%
GACAAGTTACACTCATTATT+AGG + chr6.2:5533772-5533791 MS.gene030984:intron 30.0%
GCTATTCTTGATCATTGAAA+TGG + chr6.2:5533217-5533236 MS.gene030984:intron 30.0%
GTTGAATTAACGAGTTAATG+AGG - chr6.2:5534048-5534067 None:intergenic 30.0%
TATACCTGTGCTTACTTAAT+GGG + chr6.2:5533441-5533460 MS.gene030984:intron 30.0%
TGATTGACCAATAGTAATTG+GGG + chr6.2:5534988-5535007 MS.gene030984:intron 30.0%
TTAGTGTAAAGATGTTCACA+CGG - chr6.2:5533801-5533820 None:intergenic 30.0%
TTATACCTGTGCTTACTTAA+TGG + chr6.2:5533440-5533459 MS.gene030984:intron 30.0%
TTGTACTACATAGTGTATCA+CGG - chr6.2:5534291-5534310 None:intergenic 30.0%
TTTCAATGATCAAGAATAGC+TGG - chr6.2:5533217-5533236 None:intergenic 30.0%
! AAGCATGTATTTCAGTTTTC+AGG + chr6.2:5534478-5534497 MS.gene030984:intron 30.0%
! AATCATATTGTTTCGGTGTA+GGG - chr6.2:5533295-5533314 None:intergenic 30.0%
! ATTGGGAAAATAGTGTTGTT+AGG - chr6.2:5534360-5534379 None:intergenic 30.0%
! CTGTTGTGAACTTGTTTATT+AGG + chr6.2:5533512-5533531 MS.gene030984:intron 30.0%
! TAATCATATTGTTTCGGTGT+AGG - chr6.2:5533296-5533315 None:intergenic 30.0%
!! AAACAAAGTGTTGTCAATTG+CGG - chr6.2:5534383-5534402 None:intergenic 30.0%
!! AAGTTGTTTTCATAAGCTTC+TGG - chr6.2:5534795-5534814 None:intergenic 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + chr6.2:5534306-5534325 MS.gene030984:intron 30.0%
!!! GTTTTTATGTTGGTCTTGAA+TGG + chr6.2:5534399-5534418 MS.gene030984:intron 30.0%
!!! TGGAAAATTTGCTGATGTTT+TGG + chr6.2:5532822-5532841 MS.gene030984:CDS 30.0%
ATACCTGTGCTTACTTAATG+GGG + chr6.2:5533442-5533461 MS.gene030984:intron 35.0%
ATAGCATCATGAAGCAGAAT+AGG - chr6.2:5532979-5532998 None:intergenic 35.0%
ATTAGAGATGGTCTTCTTCA+AGG + chr6.2:5535372-5535391 MS.gene030984:CDS 35.0%
CAATATCAACAATGAGAGTC+TGG - chr6.2:5534113-5534132 None:intergenic 35.0%
CAGGTCATAATCAAATGCAT+AGG - chr6.2:5533478-5533497 None:intergenic 35.0%
GATCTGTTCTTATCACTTCT+AGG + chr6.2:5534639-5534658 MS.gene030984:intron 35.0%
GCAGAAGAATGATATTGCAA+AGG + chr6.2:5533947-5533966 MS.gene030984:CDS 35.0%
GGATAATGTCTTTGTGAATG+TGG + chr6.2:5533533-5533552 MS.gene030984:intron 35.0%
TAAATGCGAGACGAAAACTA+AGG + chr6.2:5532927-5532946 MS.gene030984:CDS 35.0%
TAGTGTAAAGATGTTCACAC+GGG - chr6.2:5533800-5533819 None:intergenic 35.0%
TATCAATAGCTGCAAGAATG+AGG + chr6.2:5535043-5535062 MS.gene030984:intron 35.0%
TGACATCGCCTAAAACATTA+AGG - chr6.2:5534070-5534089 None:intergenic 35.0%
! AAACACTTGTGAGACTGTTT+TGG + chr6.2:5534705-5534724 MS.gene030984:intron 35.0%
! AAGCATCTGATGCCTTTTAT+AGG + chr6.2:5533589-5533608 MS.gene030984:CDS 35.0%
! GAACACAGATGAAGATTTTG+AGG - chr6.2:5535310-5535329 None:intergenic 35.0%
! TTTTAGGCGATGTCAATGTA+CGG + chr6.2:5534075-5534094 MS.gene030984:intron 35.0%
!! CGGTTTGTTAGAAGTGAAAA+AGG - chr6.2:5533353-5533372 None:intergenic 35.0%
AACAACAGCTAAGGATGTCA+TGG + chr6.2:5535233-5535252 MS.gene030984:CDS 40.0%
AACAGTCAGATTCCAACAAC+AGG - chr6.2:5533497-5533516 None:intergenic 40.0%
AATAGCTGCAAGAATGAGGT+TGG + chr6.2:5535047-5535066 MS.gene030984:intron 40.0%
AGTGTTGTCAATTGCGGATT+GGG - chr6.2:5534377-5534396 None:intergenic 40.0%
ATTGCTGTGCAGATTAGAGA+TGG + chr6.2:5535360-5535379 MS.gene030984:CDS 40.0%
GCTCTCTTGACATTAACATC+AGG - chr6.2:5534138-5534157 None:intergenic 40.0%
GTTGCTATCAAAGAGCAGTT+TGG + chr6.2:5532802-5532821 MS.gene030984:CDS 40.0%
TATTGCAAAGGCTGTTGAAG+AGG + chr6.2:5533959-5533978 MS.gene030984:CDS 40.0%
TCAATACTTCGACACCATGA+AGG + chr6.2:5535272-5535291 MS.gene030984:CDS 40.0%
TCATCTGTGTTCATTCCACA+TGG + chr6.2:5535318-5535337 MS.gene030984:CDS 40.0%
TCATGGTACAGTCTGTATTC+TGG + chr6.2:5534540-5534559 MS.gene030984:intron 40.0%
TGGTCAAATAGCAGCTATAG+TGG + chr6.2:5534223-5534242 MS.gene030984:intron 40.0%
TTATAGGCTCACCAACACAA+GGG + chr6.2:5533605-5533624 MS.gene030984:CDS 40.0%
TTCGACACCATGAAGGAAAT+TGG + chr6.2:5535279-5535298 MS.gene030984:CDS 40.0%
TTGCAGATCAAGAAAGCTGA+AGG + chr6.2:5535102-5535121 MS.gene030984:CDS 40.0%
TTTATAGGCTCACCAACACA+AGG + chr6.2:5533604-5533623 MS.gene030984:CDS 40.0%
! AAGTGTTGTCAATTGCGGAT+TGG - chr6.2:5534378-5534397 None:intergenic 40.0%
! ATAAGCTTCTGGAGAGCTTA+TGG - chr6.2:5534784-5534803 None:intergenic 40.0%
! CGCATTTAACATCAAGTTGC+TGG - chr6.2:5532915-5532934 None:intergenic 40.0%
! CTGCTCTTTGATAGCAACAT+TGG - chr6.2:5532800-5532819 None:intergenic 40.0%
! TGTGTTGGTGAGCCTATAAA+AGG - chr6.2:5533604-5533623 None:intergenic 40.0%
! TTGTCAAATAGCGGCTTTTG+TGG + chr6.2:5534315-5534334 MS.gene030984:intron 40.0%
!!! TTTGCTGATGTTTTGGAACC+TGG + chr6.2:5532829-5532848 MS.gene030984:CDS 40.0%
ACAGCATCCAGTTCCAACTT+TGG - chr6.2:5533921-5533940 None:intergenic 45.0%
ACATCCTTAGCTGTTGTTCC+GGG - chr6.2:5535231-5535250 None:intergenic 45.0%
ACCAAGTCCGGACAGATATT+TGG - chr6.2:5535139-5535158 None:intergenic 45.0%
AGCTAAGGATGTCATGGACA+TGG + chr6.2:5535239-5535258 MS.gene030984:CDS 45.0%
CAACCCCATTAAGTAAGCAC+AGG - chr6.2:5533448-5533467 None:intergenic 45.0%
CTGTGCTTACTTAATGGGGT+TGG + chr6.2:5533446-5533465 MS.gene030984:intron 45.0%
GACATCCTTAGCTGTTGTTC+CGG - chr6.2:5535232-5535251 None:intergenic 45.0%
GCAATGAACGAGATCAATGC+AGG + chr6.2:5534156-5534175 MS.gene030984:CDS 45.0%
GCAGAATAGGCGGACAAAAA+AGG - chr6.2:5532966-5532985 None:intergenic 45.0%
GCATCATGAAGCAGAATAGG+CGG - chr6.2:5532976-5532995 None:intergenic 45.0%
GCATTCTCAGAGAATGTTCC+CGG + chr6.2:5535210-5535229 MS.gene030984:CDS 45.0%
GGATGCACCAATTTCCTTCA+TGG - chr6.2:5535289-5535308 None:intergenic 45.0%
GTGATAATCCACCAGCAATC+TGG - chr6.2:5532885-5532904 None:intergenic 45.0%
TCCAAATATCTGTCCGGACT+TGG + chr6.2:5535135-5535154 MS.gene030984:CDS 45.0%
TCCGGACAGATATTTGGACT+CGG - chr6.2:5535133-5535152 None:intergenic 45.0%
TGTTGAAGAGGAGCTTGAGA+AGG + chr6.2:5533971-5533990 MS.gene030984:CDS 45.0%
TTGGATCTGTTCCCTTGTGT+TGG - chr6.2:5533619-5533638 None:intergenic 45.0%
TTTGTGGCACTATAGCGTAG+TGG + chr6.2:5534331-5534350 MS.gene030984:intron 45.0%
ATCTGGTAACCGAGACACCA+AGG - chr6.2:5532868-5532887 None:intergenic 50.0%
ATCTGTACAATACCGCGCTG+TGG + chr6.2:5533560-5533579 MS.gene030984:CDS 50.0%
CAAGGCAGACAATGACATCC+AGG - chr6.2:5532850-5532869 None:intergenic 50.0%
CTGGATGTCATTGTCTGCCT+TGG + chr6.2:5532848-5532867 MS.gene030984:CDS 50.0%
GAGTGTGCCAAAGTTGGAAC+TGG + chr6.2:5533911-5533930 MS.gene030984:CDS 50.0%
GCCGAGTCCAAATATCTGTC+CGG + chr6.2:5535129-5535148 MS.gene030984:CDS 50.0%
GGATGTCATGGACATGGTGT+TGG + chr6.2:5535245-5535264 MS.gene030984:CDS 50.0%
GTGTTCATTCCACATGGTCC+TGG + chr6.2:5535324-5535343 MS.gene030984:CDS 50.0%
TGTCTCGGTTACCAGATTGC+TGG + chr6.2:5532871-5532890 MS.gene030984:CDS 50.0%
TGTTCCCGGAACAACAGCTA+AGG + chr6.2:5535224-5535243 MS.gene030984:CDS 50.0%
TTGGCGAGCTATACCAAGTC+CGG - chr6.2:5535151-5535170 None:intergenic 50.0%
!! CATTGTCTGCCTTGGTGTCT+CGG + chr6.2:5532856-5532875 MS.gene030984:CDS 50.0%
AAGGGCGAGTGTGCCAAAGT+TGG + chr6.2:5533905-5533924 MS.gene030984:CDS 55.0%
ATGCTTTGTCAGCCACAGCG+CGG - chr6.2:5533575-5533594 None:intergenic 55.0%
CTCGGTTACCAGATTGCTGG+TGG + chr6.2:5532874-5532893 MS.gene030984:CDS 55.0%
GCAATGTCTCTGACAGCACC+AGG - chr6.2:5535345-5535364 None:intergenic 55.0%
TGGTATAGCTCGCCAACGTC+AGG + chr6.2:5535155-5535174 MS.gene030984:CDS 55.0%
CAACGTCAGGCCATCGTGGA+CGG + chr6.2:5535168-5535187 MS.gene030984:CDS 60.0%
CTGACAGCACCAGGACCATG+TGG - chr6.2:5535336-5535355 None:intergenic 60.0%
GTCTCTCAGTCCGTCCACGA+TGG - chr6.2:5535181-5535200 None:intergenic 60.0%
! GAGGTTGGCTGCGAACGAGA+AGG + chr6.2:5535062-5535081 MS.gene030984:CDS 60.0%
CGTCCACGATGGCCTGACGT+TGG - chr6.2:5535170-5535189 None:intergenic 65.0%
TCGCCAACGTCAGGCCATCG+TGG + chr6.2:5535164-5535183 MS.gene030984:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5532760 5535413 5532760 ID=MS.gene030984
chr6.2 mRNA 5532760 5535413 5532760 ID=MS.gene030984.t1;Parent=MS.gene030984
chr6.2 exon 5532760 5532948 5532760 ID=MS.gene030984.t1.exon1;Parent=MS.gene030984.t1
chr6.2 CDS 5532760 5532948 5532760 ID=cds.MS.gene030984.t1;Parent=MS.gene030984.t1
chr6.2 exon 5533534 5533654 5533534 ID=MS.gene030984.t1.exon2;Parent=MS.gene030984.t1
chr6.2 CDS 5533534 5533654 5533534 ID=cds.MS.gene030984.t1;Parent=MS.gene030984.t1
chr6.2 exon 5533901 5533992 5533901 ID=MS.gene030984.t1.exon3;Parent=MS.gene030984.t1
chr6.2 CDS 5533901 5533992 5533901 ID=cds.MS.gene030984.t1;Parent=MS.gene030984.t1
chr6.2 exon 5534081 5534177 5534081 ID=MS.gene030984.t1.exon4;Parent=MS.gene030984.t1
chr6.2 CDS 5534081 5534177 5534081 ID=cds.MS.gene030984.t1;Parent=MS.gene030984.t1
chr6.2 exon 5535052 5535413 5535052 ID=MS.gene030984.t1.exon5;Parent=MS.gene030984.t1
chr6.2 CDS 5535052 5535413 5535052 ID=cds.MS.gene030984.t1;Parent=MS.gene030984.t1
Gene Sequence

>MS.gene030984

ATGGGTCAAGCACTAGGATGCGTTCAAGTTGATCAGTCCAATGTTGCTATCAAAGAGCAGTTTGGAAAATTTGCTGATGTTTTGGAACCTGGATGTCATTGTCTGCCTTGGTGTCTCGGTTACCAGATTGCTGGTGGATTATCACTTCGTGTCCAGCAACTTGATGTTAAATGCGAGACGAAAACTAAGGTCCTTTCATTCTTCCTTTTTTGTCCGCCTATTCTGCTTCATGATGCTATTATTTATTTTGTGTTGTATGATAAGAAAGTGTTTTGTTTCTTTTGTTAATAAGCTTTCAAACAAATTTGTTTAAAATCTTGAGAACATTCTGTTCTAAATATTTTCAACGATGATTTCAAAAGTAACAGTTTTCTAACAAGGATTATCAATGTGTCTCTAATTTGTCATATTTTTATAACTTACAGAAAGAATTCTTTTGATGATATATTTGTTGCCAGCTATTCTTGATCATTGAAATGGTTTAAGTTCTACGTTGAATTTTGGATACTTTTTTTTTTTTTTTTTTTTCTTTCCCTACACCGAAACAATATGATTACTTTTATTCTTTGGATTTATGCTTCAGGAAATTTCCTTTTTCACTTCTAACAAACCGTTTTTACTTCAAGATTAAGAAAATATACTGTTAAACGTTTTTACTTGAAGATTAAGAAAACATATTGTTATACCTGTGCTTACTTAATGGGGTTGGATATTTCCTATGCATTTGATTATGACCTGTTGTTGGAATCTGACTGTTGTGAACTTGTTTATTAGGATAATGTCTTTGTGAATGTGGTTGCATCTGTACAATACCGCGCTGTGGCTGACAAAGCATCTGATGCCTTTTATAGGCTCACCAACACAAGGGAACAGATCCAATCATATGTTTTTGATGGTATGCACAGTGATTTTCCGCTTCATTCTATTACTTAGTTTTGAAATGAAATTATAGAAAATGTCAGGGTAAAATTGTTTTAAACATGCATCCGATGATGTGTTACATCGTTATTATGACAAGTTACACTCATTATTAGGTGCCCGTGTGAACATCTTTACACTAACAAGTGTTGTGTTATACCATGATTGATAATTTAGTTGCTTGCTTCTTTAAAACCTTATGATATTTTGCATTTATTTTCAGTTATAAGGGCGAGTGTGCCAAAGTTGGAACTGGATGCTGTCTTTGAGCAGAAGAATGATATTGCAAAGGCTGTTGAAGAGGAGCTTGAGAAGGTGTTTATTCTTTTTCTCTGTTTTCATCTTTATATAAAATGTTTATAATCGTCCTCATTAACTCGTTAATTCAACCTTAATGTTTTAGGCGATGTCAATGTACGGATATCAGATAGTCCAGACTCTCATTGTTGATATTGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATCAATGCAGGTAACATATTCTAGTTGCTCAACAAATAAAACATTTTGCTTAGTGTGGTCAAATAGCAGCTATAGTGGCGCTAATAATGTAGCATAGAATTTGAACAAATTGTTGTTGTTCCGTGATACACTATGTAGTACAAAGTGTTGTCAAATAGCGGCTTTTGTGGCACTATAGCGTAGTGGAATCCTAACAACACTATTTTCCCAATCCGCAATTGACAACACTTTGTTTTTATGTTGGTCTTGAATGGAATAGATGATTGTGTCTACAAACATGTTTGTACAATACTGTGATGAGTACTTCTGTAAGCATGTATTTCAGTTTTCAGGCAAAAAAACAAAATTTAGGATTTAGTTTTTCAATTTCTGTCATGGTACAGTCTGTATTCTGGTCCTACATGTGTTTAGATGTTATAACTCTAAAAAGCATGTTTGATGTAATTTTTCAACATAACATAAATACTCTAGGATCTGTTCTTATCACTTCTAGGATCTGTTCTGATTTGCTTATTTGATCTTATCTACTAGTGGTATAAACACTTGTGAGACTGTTTTGGCGAGTTTATAAAAACAACTTATGGCATGCCCATTTGCTATTTTCAGCTTATTTCCATAAGCTCTCCAGAAGCTTATGAAAACAACTTATAGCTTATATGAAAACAGTTCGACTTTATCTTTTATTATAGAAATAGTTCATACATAAGCACTTATATGATATTATATACACTTGTACCATAAGCACTTGATTAAGTTGTTTATCGAAACATGACTATAGTCAAACTGAACTCCTTTTTAGTCATTTTTTGTGTGAAAATTTTGATTGACCAATAGTAATTGGGGTTGTATTCTGATCATTTTTTTTACAATGGTTTTATCAATAGCTGCAAGAATGAGGTTGGCTGCGAACGAGAAGGCTGAAGCAGAAAAGATATTGCAGATCAAGAAAGCTGAAGGAGAAGCCGAGTCCAAATATCTGTCCGGACTTGGTATAGCTCGCCAACGTCAGGCCATCGTGGACGGACTGAGAGACAGCGTTCTCGCATTCTCAGAGAATGTTCCCGGAACAACAGCTAAGGATGTCATGGACATGGTGTTGGTGACTCAATACTTCGACACCATGAAGGAAATTGGTGCATCCTCAAAATCTTCATCTGTGTTCATTCCACATGGTCCTGGTGCTGTCAGAGACATTGCTGTGCAGATTAGAGATGGTCTTCTTCAAGGAAATGCTGCAAACTTATAA
Protein sequence

>MS.gene030984.t1

MGQALGCVQVDQSNVAIKEQFGKFADVLEPGCHCLPWCLGYQIAGGLSLRVQQLDVKCETKTKDNVFVNVVASVQYRAVADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAVFEQKNDIAKAVEEELEKAMSMYGYQIVQTLIVDIEPDVNVKRAMNEINAAARMRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDIAVQIRDGLLQGNAANL