Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20481.t1 | XP_013450931.1 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 4.80E-153 | 550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20481.t1 | Q6K550 | 87.3 | 283 | 36 | 0 | 1 | 283 | 1 | 283 | 5.4e-137 | 488.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20481.t1 | A0A072U6I0 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 3.5e-153 | 550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene20481 | -0.859659 | 3.55E-63 | -1.69E-46 |
| MS.gene051122 | MS.gene20481 | 0.812822 | 3.49E-51 | -1.69E-46 |
| MS.gene052965 | MS.gene20481 | -0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene20481 | 0.802181 | 6.34E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene20481 | 0.820066 | 8.34E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene20481 | 0.823379 | 1.43E-53 | -1.69E-46 |
| MS.gene055147 | MS.gene20481 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene20481 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene055149 | MS.gene20481 | 0.804478 | 2.12E-49 | -1.69E-46 |
| MS.gene055226 | MS.gene20481 | 0.831158 | 1.96E-55 | -1.69E-46 |
| MS.gene056064 | MS.gene20481 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene20481 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene060412 | MS.gene20481 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene20481 | 0.802651 | 5.07E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene20481 | 0.802706 | 4.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20481 | MS.gene59292 | PPI |
| MS.gene20481 | MS.gene066093 | PPI |
| MS.gene20481 | MS.gene066088 | PPI |
| MS.gene033158 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene033164 | PPI |
| MS.gene20481 | MS.gene028857 | PPI |
| MS.gene20481 | MS.gene066087 | PPI |
| MS.gene51054 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene066097 | PPI |
| MS.gene20481 | MS.gene033162 | PPI |
| MS.gene31416 | MS.gene20481 | PPI |
| MS.gene043467 | MS.gene20481 | PPI |
| MS.gene51045 | MS.gene20481 | PPI |
| MS.gene033163 | MS.gene20481 | PPI |
| MS.gene51047 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene51044 | PPI |
| MS.gene20481 | MS.gene51046 | PPI |
| MS.gene20481 | MS.gene066086 | PPI |
| MS.gene058043 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene51051 | PPI |
| MS.gene20481 | MS.gene43265 | PPI |
| MS.gene066091 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene055768 | PPI |
| MS.gene43264 | MS.gene20481 | PPI |
| MS.gene20481 | MS.gene029948 | PPI |
| MS.gene20481 | MS.gene066085 | PPI |
| MS.gene20481 | MS.gene43234 | PPI |
| MS.gene033161 | MS.gene20481 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20481.t1 | MTR_6g011380 | 99.650 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 0.0 | 585 |
| MS.gene20481.t1 | MTR_8g469160 | 82.394 | 284 | 50 | 0 | 1 | 284 | 1 | 284 | 2.36e-179 | 495 |
| MS.gene20481.t1 | MTR_4g107810 | 84.561 | 285 | 44 | 0 | 1 | 285 | 1 | 285 | 8.39e-175 | 484 |
| MS.gene20481.t1 | MTR_4g107760 | 84.561 | 285 | 44 | 0 | 1 | 285 | 1 | 285 | 8.39e-175 | 484 |
| MS.gene20481.t1 | MTR_4g107810 | 84.561 | 285 | 44 | 0 | 1 | 285 | 61 | 345 | 1.11e-173 | 483 |
| MS.gene20481.t1 | MTR_4g107830 | 78.788 | 297 | 48 | 1 | 1 | 282 | 1 | 297 | 3.64e-172 | 478 |
| MS.gene20481.t1 | MTR_4g107720 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 8.97e-171 | 474 |
| MS.gene20481.t1 | MTR_4g107730 | 77.465 | 284 | 58 | 2 | 1 | 282 | 1 | 280 | 6.01e-156 | 436 |
| MS.gene20481.t1 | MTR_6g460470 | 57.447 | 282 | 120 | 0 | 5 | 286 | 7 | 288 | 3.59e-115 | 333 |
| MS.gene20481.t1 | MTR_4g107700 | 88.889 | 81 | 9 | 0 | 202 | 282 | 6 | 86 | 1.77e-46 | 151 |
| MS.gene20481.t1 | MTR_6g060500 | 50.769 | 65 | 19 | 1 | 161 | 212 | 1 | 65 | 4.76e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20481.t1 | AT5G62740 | 87.413 | 286 | 36 | 0 | 1 | 286 | 1 | 286 | 0.0 | 515 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT1G69840 | 86.268 | 284 | 39 | 0 | 1 | 284 | 1 | 284 | 0.0 | 500 |
| MS.gene20481.t1 | AT3G01290 | 75.439 | 285 | 70 | 0 | 1 | 285 | 1 | 285 | 4.43e-162 | 452 |
| MS.gene20481.t1 | AT5G51570 | 58.214 | 280 | 115 | 1 | 6 | 285 | 10 | 287 | 8.24e-122 | 350 |
Find 59 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAATTTGCTGATGTTT+TGG | 0.245719 | 6.3:+5960819 | MS.gene20481:CDS |
| ACCAAGTCCGGACAGATATT+TGG | 0.265153 | 6.3:-5963134 | None:intergenic |
| TTCGACACCATGAAGGAAAT+TGG | 0.320579 | 6.3:+5963277 | MS.gene20481:CDS |
| GACATCCTTAGCTGTTGTTC+CGG | 0.321221 | 6.3:-5963227 | None:intergenic |
| CGCATTTAACATCAAGTTGC+TGG | 0.331640 | 6.3:-5960909 | None:intergenic |
| GGATGCACCAATTTCCTTCA+TGG | 0.336344 | 6.3:-5963284 | None:intergenic |
| GTTGCTATCAAAGAGCAGTT+TGG | 0.398436 | 6.3:+5960799 | MS.gene20481:CDS |
| ACATCCTTAGCTGTTGTTCC+GGG | 0.398792 | 6.3:-5963226 | None:intergenic |
| GCATTCTCAGAGAATGTTCC+CGG | 0.406028 | 6.3:+5963208 | MS.gene20481:CDS |
| TCCAAATATCTGTCCGGACT+TGG | 0.431611 | 6.3:+5963133 | MS.gene20481:CDS |
| CATTGTCTGCCTTGGTGTCT+CGG | 0.432891 | 6.3:+5960853 | MS.gene20481:CDS |
| TGTGTTGGTGAGCCTATAAA+AGG | 0.433567 | 6.3:-5961601 | None:intergenic |
| CAATATCAACAATGAGAGTC+TGG | 0.437796 | 6.3:-5962110 | None:intergenic |
| CTGGATGTCATTGTCTGCCT+TGG | 0.439595 | 6.3:+5960845 | MS.gene20481:CDS |
| TGGTATAGCTCGCCAACGTC+AGG | 0.445390 | 6.3:+5963153 | MS.gene20481:CDS |
| GTGATAATCCACCAGCAATC+TGG | 0.447532 | 6.3:-5960879 | None:intergenic |
| ATTAGAGATGGTCTACTTCA+AGG | 0.452959 | 6.3:+5963370 | MS.gene20481:CDS |
| ACAGCATCCAGTTCCAACTT+TGG | 0.465414 | 6.3:-5961918 | None:intergenic |
| CTGCTCTTTGATAGCAACAT+TGG | 0.482212 | 6.3:-5960794 | None:intergenic |
| GTGTTCATTCCACATGGTCC+TGG | 0.494595 | 6.3:+5963322 | MS.gene20481:CDS |
| TGTCTCGGTTACCAGATTGC+TGG | 0.507349 | 6.3:+5960868 | MS.gene20481:CDS |
| TTGGATCTGTTCCCTTGTGT+TGG | 0.521954 | 6.3:-5961616 | None:intergenic |
| CTCGGTTACCAGATTGCTGG+TGG | 0.526148 | 6.3:+5960871 | MS.gene20481:CDS |
| GCTCTCTTGACATTAACATC+AGG | 0.526243 | 6.3:-5962135 | None:intergenic |
| GAGTGTGCCAAAGTTGGAAC+TGG | 0.526727 | 6.3:+5961911 | MS.gene20481:CDS |
| GGATAATGTCTTTGTGAATG+TGG | 0.527742 | 6.3:+5961533 | MS.gene20481:intron |
| GCCGAGTCCAAATATCTGTC+CGG | 0.531297 | 6.3:+5963127 | MS.gene20481:CDS |
| AAGGGCGAGTGTGCCAAAGT+TGG | 0.533494 | 6.3:+5961905 | MS.gene20481:CDS |
| TATCAATAGCTGCAAGAATG+AGG | 0.535939 | 6.3:+5963041 | MS.gene20481:intron |
| GCAATGAACGAGATCAATGC+AGG | 0.547779 | 6.3:+5962156 | MS.gene20481:CDS |
| TGAAAGATGGGTCAAGCACT+AGG | 0.554200 | 6.3:+5960751 | None:intergenic |
| CAACGTCAGGCCATCGTGGA+CGG | 0.557301 | 6.3:+5963166 | MS.gene20481:CDS |
| TTGGCGAGCTATACCAAGTC+CGG | 0.560351 | 6.3:-5963146 | None:intergenic |
| CAAGGCAGACAATGACATCC+AGG | 0.562294 | 6.3:-5960844 | None:intergenic |
| AATAGCTGCAAGAATGAGGT+TGG | 0.565001 | 6.3:+5963045 | MS.gene20481:intron |
| TCCGGACAGATATTTGGACT+CGG | 0.577468 | 6.3:-5963128 | None:intergenic |
| TTGCAGATCAAGAAAGCTGA+AGG | 0.578517 | 6.3:+5963100 | MS.gene20481:CDS |
| GCAATGTCTCTGACAGCACC+AGG | 0.581198 | 6.3:-5963340 | None:intergenic |
| TTTATAGGCTCACCAACACA+AGG | 0.582376 | 6.3:+5961604 | MS.gene20481:CDS |
| AACAACAGCTAAGGATGTCA+TGG | 0.584615 | 6.3:+5963231 | MS.gene20481:CDS |
| GTCTCTCAGTCCGTCCACGA+TGG | 0.587635 | 6.3:-5963176 | None:intergenic |
| TCAATACTTCGACACCATGA+AGG | 0.590033 | 6.3:+5963270 | MS.gene20481:CDS |
| TCATCTGTGTTCATTCCACA+TGG | 0.597536 | 6.3:+5963316 | MS.gene20481:CDS |
| TATTGCAAAGGCTGTTGAAG+AGG | 0.598645 | 6.3:+5961959 | MS.gene20481:CDS |
| TGTTGAAGAGGAGCTTGAGA+AGG | 0.599510 | 6.3:+5961971 | MS.gene20481:CDS |
| GAGGTTGGCTGCGAACGAGA+AGG | 0.605456 | 6.3:+5963060 | MS.gene20481:CDS |
| GGATGTCATGGACATGGTGT+TGG | 0.609921 | 6.3:+5963243 | MS.gene20481:CDS |
| GCAGAAGAATGATATTGCAA+AGG | 0.622367 | 6.3:+5961947 | MS.gene20481:CDS |
| ATTGCTGTGCAGATTAGAGA+TGG | 0.623952 | 6.3:+5963358 | MS.gene20481:CDS |
| AGCTAAGGATGTCATGGACA+TGG | 0.630589 | 6.3:+5963237 | MS.gene20481:CDS |
| TGTTCCCGGAACAACAGCTA+AGG | 0.631258 | 6.3:+5963222 | MS.gene20481:CDS |
| TAAATGCGAGACGAAAACTA+AGG | 0.632324 | 6.3:+5960924 | MS.gene20481:CDS |
| ATCTGGTAACCGAGACACCA+AGG | 0.656135 | 6.3:-5960862 | None:intergenic |
| CGTCCACGATGGCCTGACGT+TGG | 0.664492 | 6.3:-5963165 | None:intergenic |
| ATCTGTACAATACCGCGCTG+TGG | 0.666853 | 6.3:+5961560 | MS.gene20481:CDS |
| CTGACAGCACCAGGACCATG+TGG | 0.682921 | 6.3:-5963331 | None:intergenic |
| TTATAGGCTCACCAACACAA+GGG | 0.702114 | 6.3:+5961605 | MS.gene20481:CDS |
| TCGCCAACGTCAGGCCATCG+TGG | 0.726579 | 6.3:+5963162 | MS.gene20481:CDS |
| ATGCTTTGTCAGCCACAGCG+CGG | 0.759934 | 6.3:-5961572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATGCAAAATATCATA+AGG | - | chr6.3:5961876-5961895 | None:intergenic | 15.0% |
| !!! | ATATGATTACTTTTATTCTT+TGG | + | chr6.3:5961307-5961326 | MS.gene20481:intron | 15.0% |
| !! | ATGAAATTATAGAAAATGTC+AGG | + | chr6.3:5961700-5961719 | MS.gene20481:intron | 20.0% |
| !! | GAGTTTATAAAAACAACTTA+TGG | + | chr6.3:5962729-5962748 | MS.gene20481:intron | 20.0% |
| !! | TAAAAGTAATCATATTGTGT+CGG | - | chr6.3:5961302-5961321 | None:intergenic | 20.0% |
| !! | TCTTAATCTTGAAGTAAAAA+CGG | - | chr6.3:5961373-5961392 | None:intergenic | 20.0% |
| !! | TGAAATTATAGAAAATGTCA+GGG | + | chr6.3:5961701-5961720 | MS.gene20481:intron | 20.0% |
| !!! | GCATTTATTTTCAGTTATAA+GGG | + | chr6.3:5961887-5961906 | MS.gene20481:intron | 20.0% |
| !!! | TAATTCAACCTTAATGTTTT+AGG | + | chr6.3:5962059-5962078 | MS.gene20481:intron | 20.0% |
| !!! | TGCATTTATTTTCAGTTATA+AGG | + | chr6.3:5961886-5961905 | MS.gene20481:intron | 20.0% |
| !!! | TTCTGATCATTTTTTTACAA+TGG | + | chr6.3:5963015-5963034 | MS.gene20481:intron | 20.0% |
| ! | AACTAAGTAATAGAATGAAG+CGG | - | chr6.3:5961675-5961694 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCAAA+TGG | - | chr6.3:5962760-5962779 | None:intergenic | 25.0% |
| ! | AGCAACTAAATTATCAATCA+TGG | - | chr6.3:5961840-5961859 | None:intergenic | 25.0% |
| ! | ATAAGCTGAAAATAGCAAAT+GGG | - | chr6.3:5962759-5962778 | None:intergenic | 25.0% |
| ! | CAACATAACATAAATACTCT+AGG | + | chr6.3:5962617-5962636 | MS.gene20481:intron | 25.0% |
| ! | CACACAAAAAATGACTAAAA+AGG | - | chr6.3:5962961-5962980 | None:intergenic | 25.0% |
| ! | CAGGCAAAAAAACAAAATTT+AGG | + | chr6.3:5962497-5962516 | MS.gene20481:intron | 25.0% |
| ! | TACCATCAAAAACATATGAT+TGG | - | chr6.3:5961638-5961657 | None:intergenic | 25.0% |
| ! | TATAACATCTAAACACATGT+AGG | - | chr6.3:5962567-5962586 | None:intergenic | 25.0% |
| ! | TTTGATTGACCATAGTAATT+GGG | + | chr6.3:5962986-5963005 | MS.gene20481:intron | 25.0% |
| !! | ATAAAACATTTTGCTTAGTG+TGG | + | chr6.3:5962203-5962222 | MS.gene20481:intron | 25.0% |
| !! | TTTAAGTTCTACGTAATTTG+AGG | + | chr6.3:5961237-5961256 | MS.gene20481:intron | 25.0% |
| !!! | ACAACACTTTGTTTTTATGT+TGG | + | chr6.3:5962389-5962408 | MS.gene20481:intron | 25.0% |
| !!! | ATCCAATCATATGTTTTTGA+TGG | + | chr6.3:5961633-5961652 | MS.gene20481:CDS | 25.0% |
| !!! | TAGTTTTTCAATTTCTGTCA+TGG | + | chr6.3:5962523-5962542 | MS.gene20481:intron | 25.0% |
| !!! | TTTTGATTGACCATAGTAAT+TGG | + | chr6.3:5962985-5963004 | MS.gene20481:intron | 25.0% |
| ACAACTTAATCAAGTGCTTA+TGG | - | chr6.3:5962906-5962925 | None:intergenic | 30.0% | |
| ATAACGATGTAACACATCAT+CGG | - | chr6.3:5961749-5961768 | None:intergenic | 30.0% | |
| ATTCTTTGGATTTATGCTTC+AGG | + | chr6.3:5961321-5961340 | MS.gene20481:intron | 30.0% | |
| ATTTGATTATGACCTGTTGT+TGG | + | chr6.3:5961482-5961501 | MS.gene20481:intron | 30.0% | |
| GACAAAAAAGGAAGAATGAA+AGG | - | chr6.3:5960951-5960970 | None:intergenic | 30.0% | |
| GACAAGTTACACTCATTATT+AGG | + | chr6.3:5961772-5961791 | MS.gene20481:intron | 30.0% | |
| GCTTATTTGATCTTATCTAC+TGG | + | chr6.3:5962676-5962695 | MS.gene20481:intron | 30.0% | |
| GTTGAATTAACGAGTTAATG+AGG | - | chr6.3:5962048-5962067 | None:intergenic | 30.0% | |
| TATACCTGTGCTTACTTAAT+GGG | + | chr6.3:5961441-5961460 | MS.gene20481:intron | 30.0% | |
| TATTTGATCTTATCTACTGG+TGG | + | chr6.3:5962679-5962698 | MS.gene20481:intron | 30.0% | |
| TTAGTGTAAAGATGTTCACA+CGG | - | chr6.3:5961801-5961820 | None:intergenic | 30.0% | |
| TTATACCTGTGCTTACTTAA+TGG | + | chr6.3:5961440-5961459 | MS.gene20481:intron | 30.0% | |
| TTGATTGACCATAGTAATTG+GGG | + | chr6.3:5962987-5963006 | MS.gene20481:intron | 30.0% | |
| TTGTACTACATAGTGTATCA+CGG | - | chr6.3:5962291-5962310 | None:intergenic | 30.0% | |
| TTTCAATGATCAAGAATAGC+TGG | - | chr6.3:5961214-5961233 | None:intergenic | 30.0% | |
| ! | AAAGTAACAGTTTTCCAACA+AGG | + | chr6.3:5961115-5961134 | MS.gene20481:intron | 30.0% |
| ! | AAGCATGTATTTCAGTTTTC+AGG | + | chr6.3:5962478-5962497 | MS.gene20481:intron | 30.0% |
| ! | ATTGGGAAAATAGTGTTGTT+AGG | - | chr6.3:5962360-5962379 | None:intergenic | 30.0% |
| ! | CTGTTGTGAACTTGTTTATT+AGG | + | chr6.3:5961512-5961531 | MS.gene20481:intron | 30.0% |
| !! | AAACAAAGTGTTGTCAATTG+CGG | - | chr6.3:5962383-5962402 | None:intergenic | 30.0% |
| !! | AAGTTGTTTTCATAAGCTTC+TGG | - | chr6.3:5962795-5962814 | None:intergenic | 30.0% |
| !! | CGTAATTTGAGGTTGAATTT+TGG | + | chr6.3:5961248-5961267 | MS.gene20481:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | + | chr6.3:5962306-5962325 | MS.gene20481:intron | 30.0% |
| !!! | GTTTTTATGTTGGTCTTGAA+TGG | + | chr6.3:5962399-5962418 | MS.gene20481:intron | 30.0% |
| !!! | TGGAAAATTTGCTGATGTTT+TGG | + | chr6.3:5960819-5960838 | MS.gene20481:CDS | 30.0% |
| ATACCTGTGCTTACTTAATG+GGG | + | chr6.3:5961442-5961461 | MS.gene20481:intron | 35.0% | |
| ATAGCATCATGAAGCAGAAT+AGG | - | chr6.3:5960976-5960995 | None:intergenic | 35.0% | |
| ATTAGAGATGGTCTACTTCA+AGG | + | chr6.3:5963370-5963389 | MS.gene20481:CDS | 35.0% | |
| CAATATCAACAATGAGAGTC+TGG | - | chr6.3:5962113-5962132 | None:intergenic | 35.0% | |
| CAGGTCATAATCAAATGCAT+AGG | - | chr6.3:5961478-5961497 | None:intergenic | 35.0% | |
| GAATACAACCCCAATTACTA+TGG | - | chr6.3:5962998-5963017 | None:intergenic | 35.0% | |
| GATCTGTTCTTATCACTTCT+AGG | + | chr6.3:5962639-5962658 | MS.gene20481:intron | 35.0% | |
| GCAGAAGAATGATATTGCAA+AGG | + | chr6.3:5961947-5961966 | MS.gene20481:CDS | 35.0% | |
| GGATAATGTCTTTGTGAATG+TGG | + | chr6.3:5961533-5961552 | MS.gene20481:intron | 35.0% | |
| TAAATGCGAGACGAAAACTA+AGG | + | chr6.3:5960924-5960943 | MS.gene20481:CDS | 35.0% | |
| TAGTGTAAAGATGTTCACAC+GGG | - | chr6.3:5961800-5961819 | None:intergenic | 35.0% | |
| TATCAATAGCTGCAAGAATG+AGG | + | chr6.3:5963041-5963060 | MS.gene20481:intron | 35.0% | |
| TGACATCGCCTAAAACATTA+AGG | - | chr6.3:5962070-5962089 | None:intergenic | 35.0% | |
| ! | AAACACTTGTGAGACTGTTT+TGG | + | chr6.3:5962705-5962724 | MS.gene20481:intron | 35.0% |
| ! | AAGCATCTGATGCCTTTTAT+AGG | + | chr6.3:5961589-5961608 | MS.gene20481:CDS | 35.0% |
| ! | AATCATATTGTGTCGGTGTA+GGG | - | chr6.3:5961295-5961314 | None:intergenic | 35.0% |
| ! | GAACACAGATGAAGATTTTG+AGG | - | chr6.3:5963308-5963327 | None:intergenic | 35.0% |
| ! | GACACATTGATAATCCTTGT+TGG | - | chr6.3:5961132-5961151 | None:intergenic | 35.0% |
| ! | TAATCATATTGTGTCGGTGT+AGG | - | chr6.3:5961296-5961315 | None:intergenic | 35.0% |
| ! | TTTTAGGCGATGTCAATGTA+CGG | + | chr6.3:5962075-5962094 | MS.gene20481:intron | 35.0% |
| !! | CGGTTTGTTAGAAGTGAAAA+AGG | - | chr6.3:5961353-5961372 | None:intergenic | 35.0% |
| AACAACAGCTAAGGATGTCA+TGG | + | chr6.3:5963231-5963250 | MS.gene20481:CDS | 40.0% | |
| AACAGTCAGATTCCAACAAC+AGG | - | chr6.3:5961497-5961516 | None:intergenic | 40.0% | |
| AATAGCTGCAAGAATGAGGT+TGG | + | chr6.3:5963045-5963064 | MS.gene20481:intron | 40.0% | |
| AGTGTTGTCAATTGCGGATT+GGG | - | chr6.3:5962377-5962396 | None:intergenic | 40.0% | |
| ATTGCTGTGCAGATTAGAGA+TGG | + | chr6.3:5963358-5963377 | MS.gene20481:CDS | 40.0% | |
| GCTCTCTTGACATTAACATC+AGG | - | chr6.3:5962138-5962157 | None:intergenic | 40.0% | |
| GTTGCTATCAAAGAGCAGTT+TGG | + | chr6.3:5960799-5960818 | MS.gene20481:CDS | 40.0% | |
| TATTGCAAAGGCTGTTGAAG+AGG | + | chr6.3:5961959-5961978 | MS.gene20481:CDS | 40.0% | |
| TCAATACTTCGACACCATGA+AGG | + | chr6.3:5963270-5963289 | MS.gene20481:CDS | 40.0% | |
| TCATCTGTGTTCATTCCACA+TGG | + | chr6.3:5963316-5963335 | MS.gene20481:CDS | 40.0% | |
| TCATGGTACAGTCTGTATTC+TGG | + | chr6.3:5962540-5962559 | MS.gene20481:intron | 40.0% | |
| TGGTCAAATAGCAGCTATAG+TGG | + | chr6.3:5962223-5962242 | MS.gene20481:intron | 40.0% | |
| TTATAGGCTCACCAACACAA+GGG | + | chr6.3:5961605-5961624 | MS.gene20481:CDS | 40.0% | |
| TTCGACACCATGAAGGAAAT+TGG | + | chr6.3:5963277-5963296 | MS.gene20481:CDS | 40.0% | |
| TTGCAGATCAAGAAAGCTGA+AGG | + | chr6.3:5963100-5963119 | MS.gene20481:CDS | 40.0% | |
| TTTATAGGCTCACCAACACA+AGG | + | chr6.3:5961604-5961623 | MS.gene20481:CDS | 40.0% | |
| ! | AAGTGTTGTCAATTGCGGAT+TGG | - | chr6.3:5962378-5962397 | None:intergenic | 40.0% |
| ! | ATAAGCTTCTGGAGAGCTTA+TGG | - | chr6.3:5962784-5962803 | None:intergenic | 40.0% |
| ! | ATCATATTGTGTCGGTGTAG+GGG | - | chr6.3:5961294-5961313 | None:intergenic | 40.0% |
| ! | CGCATTTAACATCAAGTTGC+TGG | - | chr6.3:5960912-5960931 | None:intergenic | 40.0% |
| ! | CTGCTCTTTGATAGCAACAT+TGG | - | chr6.3:5960797-5960816 | None:intergenic | 40.0% |
| ! | TGTGTTGGTGAGCCTATAAA+AGG | - | chr6.3:5961604-5961623 | None:intergenic | 40.0% |
| ! | TTGTCAAATAGCGGCTTTTG+TGG | + | chr6.3:5962315-5962334 | MS.gene20481:intron | 40.0% |
| !!! | TTTGCTGATGTTTTGGAACC+TGG | + | chr6.3:5960826-5960845 | MS.gene20481:CDS | 40.0% |
| ACAGCATCCAGTTCCAACTT+TGG | - | chr6.3:5961921-5961940 | None:intergenic | 45.0% | |
| ACATCCTTAGCTGTTGTTCC+GGG | - | chr6.3:5963229-5963248 | None:intergenic | 45.0% | |
| ACCAAGTCCGGACAGATATT+TGG | - | chr6.3:5963137-5963156 | None:intergenic | 45.0% | |
| AGCTAAGGATGTCATGGACA+TGG | + | chr6.3:5963237-5963256 | MS.gene20481:CDS | 45.0% | |
| CAACCCCATTAAGTAAGCAC+AGG | - | chr6.3:5961448-5961467 | None:intergenic | 45.0% | |
| CTGTGCTTACTTAATGGGGT+TGG | + | chr6.3:5961446-5961465 | MS.gene20481:intron | 45.0% | |
| GACATCCTTAGCTGTTGTTC+CGG | - | chr6.3:5963230-5963249 | None:intergenic | 45.0% | |
| GCAATGAACGAGATCAATGC+AGG | + | chr6.3:5962156-5962175 | MS.gene20481:CDS | 45.0% | |
| GCAGAATAGGCGGACAAAAA+AGG | - | chr6.3:5960963-5960982 | None:intergenic | 45.0% | |
| GCATCATGAAGCAGAATAGG+CGG | - | chr6.3:5960973-5960992 | None:intergenic | 45.0% | |
| GCATTCTCAGAGAATGTTCC+CGG | + | chr6.3:5963208-5963227 | MS.gene20481:CDS | 45.0% | |
| GGATGCACCAATTTCCTTCA+TGG | - | chr6.3:5963287-5963306 | None:intergenic | 45.0% | |
| GTGATAATCCACCAGCAATC+TGG | - | chr6.3:5960882-5960901 | None:intergenic | 45.0% | |
| TCCAAATATCTGTCCGGACT+TGG | + | chr6.3:5963133-5963152 | MS.gene20481:CDS | 45.0% | |
| TCCGGACAGATATTTGGACT+CGG | - | chr6.3:5963131-5963150 | None:intergenic | 45.0% | |
| TGTTGAAGAGGAGCTTGAGA+AGG | + | chr6.3:5961971-5961990 | MS.gene20481:CDS | 45.0% | |
| TTGGATCTGTTCCCTTGTGT+TGG | - | chr6.3:5961619-5961638 | None:intergenic | 45.0% | |
| TTTGTGGCACTATAGCGTAG+TGG | + | chr6.3:5962331-5962350 | MS.gene20481:intron | 45.0% | |
| ! | TCATATTGTGTCGGTGTAGG+GGG | - | chr6.3:5961293-5961312 | None:intergenic | 45.0% |
| ATCTGGTAACCGAGACACCA+AGG | - | chr6.3:5960865-5960884 | None:intergenic | 50.0% | |
| ATCTGTACAATACCGCGCTG+TGG | + | chr6.3:5961560-5961579 | MS.gene20481:CDS | 50.0% | |
| CAAGGCAGACAATGACATCC+AGG | - | chr6.3:5960847-5960866 | None:intergenic | 50.0% | |
| CTGGATGTCATTGTCTGCCT+TGG | + | chr6.3:5960845-5960864 | MS.gene20481:CDS | 50.0% | |
| GAGTGTGCCAAAGTTGGAAC+TGG | + | chr6.3:5961911-5961930 | MS.gene20481:CDS | 50.0% | |
| GCCGAGTCCAAATATCTGTC+CGG | + | chr6.3:5963127-5963146 | MS.gene20481:CDS | 50.0% | |
| GGATGTCATGGACATGGTGT+TGG | + | chr6.3:5963243-5963262 | MS.gene20481:CDS | 50.0% | |
| GTGTTCATTCCACATGGTCC+TGG | + | chr6.3:5963322-5963341 | MS.gene20481:CDS | 50.0% | |
| TGTCTCGGTTACCAGATTGC+TGG | + | chr6.3:5960868-5960887 | MS.gene20481:CDS | 50.0% | |
| TGTTCCCGGAACAACAGCTA+AGG | + | chr6.3:5963222-5963241 | MS.gene20481:CDS | 50.0% | |
| TTGGCGAGCTATACCAAGTC+CGG | - | chr6.3:5963149-5963168 | None:intergenic | 50.0% | |
| !! | CATTGTCTGCCTTGGTGTCT+CGG | + | chr6.3:5960853-5960872 | MS.gene20481:CDS | 50.0% |
| AAGGGCGAGTGTGCCAAAGT+TGG | + | chr6.3:5961905-5961924 | MS.gene20481:CDS | 55.0% | |
| ATGCTTTGTCAGCCACAGCG+CGG | - | chr6.3:5961575-5961594 | None:intergenic | 55.0% | |
| CTCGGTTACCAGATTGCTGG+TGG | + | chr6.3:5960871-5960890 | MS.gene20481:CDS | 55.0% | |
| GCAATGTCTCTGACAGCACC+AGG | - | chr6.3:5963343-5963362 | None:intergenic | 55.0% | |
| TGGTATAGCTCGCCAACGTC+AGG | + | chr6.3:5963153-5963172 | MS.gene20481:CDS | 55.0% | |
| CAACGTCAGGCCATCGTGGA+CGG | + | chr6.3:5963166-5963185 | MS.gene20481:CDS | 60.0% | |
| CTGACAGCACCAGGACCATG+TGG | - | chr6.3:5963334-5963353 | None:intergenic | 60.0% | |
| GTCTCTCAGTCCGTCCACGA+TGG | - | chr6.3:5963179-5963198 | None:intergenic | 60.0% | |
| ! | GAGGTTGGCTGCGAACGAGA+AGG | + | chr6.3:5963060-5963079 | MS.gene20481:CDS | 60.0% |
| CGTCCACGATGGCCTGACGT+TGG | - | chr6.3:5963168-5963187 | None:intergenic | 65.0% | |
| TCGCCAACGTCAGGCCATCG+TGG | + | chr6.3:5963162-5963181 | MS.gene20481:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 5960757 | 5963411 | 5960757 | ID=MS.gene20481 |
| chr6.3 | mRNA | 5960757 | 5963411 | 5960757 | ID=MS.gene20481.t1;Parent=MS.gene20481 |
| chr6.3 | exon | 5960757 | 5960945 | 5960757 | ID=MS.gene20481.t1.exon1;Parent=MS.gene20481.t1 |
| chr6.3 | CDS | 5960757 | 5960945 | 5960757 | ID=cds.MS.gene20481.t1;Parent=MS.gene20481.t1 |
| chr6.3 | exon | 5961534 | 5961654 | 5961534 | ID=MS.gene20481.t1.exon2;Parent=MS.gene20481.t1 |
| chr6.3 | CDS | 5961534 | 5961654 | 5961534 | ID=cds.MS.gene20481.t1;Parent=MS.gene20481.t1 |
| chr6.3 | exon | 5961901 | 5961992 | 5961901 | ID=MS.gene20481.t1.exon3;Parent=MS.gene20481.t1 |
| chr6.3 | CDS | 5961901 | 5961992 | 5961901 | ID=cds.MS.gene20481.t1;Parent=MS.gene20481.t1 |
| chr6.3 | exon | 5962081 | 5962177 | 5962081 | ID=MS.gene20481.t1.exon4;Parent=MS.gene20481.t1 |
| chr6.3 | CDS | 5962081 | 5962177 | 5962081 | ID=cds.MS.gene20481.t1;Parent=MS.gene20481.t1 |
| chr6.3 | exon | 5963050 | 5963411 | 5963050 | ID=MS.gene20481.t1.exon5;Parent=MS.gene20481.t1 |
| chr6.3 | CDS | 5963050 | 5963411 | 5963050 | ID=cds.MS.gene20481.t1;Parent=MS.gene20481.t1 |
| Gene Sequence |
| Protein sequence |
